Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>030344
MALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSS
SSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKV
SEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030344
        (179 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956003 - symbol:AT2G42975 "AT2G42975" speci...   425  6.8e-40   1


>TAIR|locus:504956003 [details] [associations]
            symbol:AT2G42975 "AT2G42975" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535
            EMBL:AY080677 EMBL:AY133735 IPI:IPI00540906 RefSeq:NP_850380.1
            UniGene:At.44004 UniGene:At.69134 PaxDb:Q8RXT7 PRIDE:Q8RXT7
            EnsemblPlants:AT2G42975.1 GeneID:818899 KEGG:ath:AT2G42975
            TAIR:At2g42975 eggNOG:NOG281865 HOGENOM:HOG000238149
            InParanoid:Q8RXT7 OMA:QKRNIKR PhylomeDB:Q8RXT7
            ProtClustDB:CLSN2680211 Genevestigator:Q8RXT7 Uniprot:Q8RXT7
        Length = 187

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 101/189 (53%), Positives = 112/189 (59%)

Query:     1 MALNFIAPS--PFVIP------KHKHLFKLQ-SQTTSCKTFAQSQRIGAEGGGGVTEEDP 51
             MALNF + S  P   P      K  H   LQ S   + +  ++   IG          + 
Sbjct:     1 MALNFFSTSLHPISNPSSSSRSKQSHHLLLQLSSPPATRVRSERSEIGVTDDNN--NNND 58

Query:    52 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYESDGS-SRKLTIRDQLAQLVGDRDDEFS 110
                                           GY SDG  SR LTIRDQLA LVGDRDD+FS
Sbjct:    59 TSSSSFSGSSSSSSVRTQLDLLEQLTSTSDGYLSDGGGSRGLTIRDQLAGLVGDRDDDFS 118

Query:   111 IPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAV 170
             IPLGKNLKKVS KFLTISQKRNI+RQ+YLNEVSQRNDSVFFATIGAFVILPP +IL IA+
Sbjct:   119 IPLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAI 178

Query:   171 LTGYVQLFP 179
             LTGYVQLFP
Sbjct:   179 LTGYVQLFP 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       150   0.00087  104 3  11 22  0.46    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  109 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.83u 0.08s 13.91t   Elapsed:  00:00:02
  Total cpu time:  13.83u 0.08s 13.91t   Elapsed:  00:00:02
  Start:  Mon May 20 17:09:36 2013   End:  Mon May 20 17:09:38 2013

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