BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030344
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6JFB2|GLMU_OLICO Bifunctional protein GlmU OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=glmU PE=3 SV=1
Length = 451
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 62 SAQTQLDLLEQLTSTSSSLEGYESD--GSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKK 119
+ ++ L +LE++ + +S E Y +D G +R++ +R A ++ +DE G N K
Sbjct: 180 AGKSALTILERIGNANSKGEYYLTDAIGIAREMGLR---AAVIETDEDEVR---GINTKA 233
Query: 120 VSEKFLTISQKRNIRRQAYLNEVS-QRNDSVFFA---TIGAFVILPPFIILGIAV 170
+ T+ Q R +RRQA V+ ++VF + T G V++ PF+++G V
Sbjct: 234 QLAEAETVMQAR-LRRQAMEAGVTLVAPETVFLSADTTFGRDVVIEPFVVIGPGV 287
>sp|P46743|RT04_PROWI Ribosomal protein S4, mitochondrial OS=Prototheca wickerhamii
GN=RPS4 PE=3 SV=1
Length = 511
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 69 LLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKV--SEK--- 123
L + LTS S S+E Y S + L ++D L + G R++ + KN+ K+ S+K
Sbjct: 413 LFQNLTSFSKSIESYSSVLA---LKLQDHLLNIKGKRNE-----VSKNINKIERSQKDNV 464
Query: 124 FLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGI 168
F+ I QK I R +L E+S +S+ F + LP ++ + I
Sbjct: 465 FINILQK--INRPTHL-EISSITNSIIFLYSPQRIYLPFYVDIDI 506
>sp|Q8Y5V0|XERD_LISMO Tyrosine recombinase XerD OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=xerD PE=3 SV=1
Length = 297
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 100 QLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVI 159
Q +G D E IPLGK V EK+L ++ + +RR Y RND VF G +
Sbjct: 167 QTIGKGDKERIIPLGKTATTVLEKYLEEARPK-LRRPKY------RNDFVFLNHHGQGLT 219
Query: 160 LPPF--IILGIAVLTG 173
F I+ GIA +G
Sbjct: 220 RQGFWKILKGIAKESG 235
>sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3
Length = 4289
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 14 PKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQL 73
P HK+ L F QR+G GVTEE+ P+ + + + + LL +L
Sbjct: 3165 PDHKYKMNLYG-------FHGGQRVGPVSAIGVTEEETPSPTEPSTEAPEAPEEPLLGEL 3217
Query: 74 TSTSS-----SLEGYESDGSSRKLTI----RDQLAQLVGDRDDEFSIPLG 114
T T S SL G T+ RD Q+V R +E + +G
Sbjct: 3218 TVTGSSPDSLSLSWTVPQGRFDSFTVQYKDRDGQPQVVRVRGEESEVTVG 3267
>sp|Q71Y59|XERD_LISMF Tyrosine recombinase XerD OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=xerD PE=3 SV=1
Length = 297
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 100 QLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVI 159
Q +G D E IPLGK V EK+L ++ + +RR Y RND VF G +
Sbjct: 167 QTIGKGDKERIIPLGKTATTVLEKYLEEARPK-LRRPKY------RNDFVFLNHHGQGLT 219
Query: 160 LPPF--IILGIAVLTG 173
F I+ GIA +G
Sbjct: 220 RQGFWKILKGIAKESG 235
>sp|Q89AG3|SYV_BUCBP Valine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=valS PE=3 SV=1
Length = 956
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 116 NLKKVSEKF--LTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTG 173
+ K VS K L K I++ AYL+ VS + + + + + +I+LG +L
Sbjct: 829 SFKNVSSKIHKLIEEHKDYIKKIAYLDNVS-----IILSNVDSMLFFKSYIVLGAELLIP 883
Query: 174 YVQLFP 179
Y ++FP
Sbjct: 884 YSKIFP 889
>sp|Q92A53|XERD_LISIN Tyrosine recombinase XerD OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=xerD PE=3 SV=1
Length = 297
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 100 QLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVI 159
Q +G D E IPLGK V E++L ++ + +RR Y RND VF G +
Sbjct: 167 QTIGKGDKERIIPLGKTATTVLEQYLEEARPK-LRRPKY------RNDFVFLNHHGQGLT 219
Query: 160 LPPF--IILGIAVLTG 173
F I+ GIA +G
Sbjct: 220 RQGFWKILKGIAKESG 235
>sp|A0L5Z9|RL17_MAGSM 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1)
GN=rplQ PE=3 SV=1
Length = 126
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 86 DGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNI--RRQA 137
D S R+ I++ L L E ++P K L+ V+EK +T+ ++ ++ RRQA
Sbjct: 13 DTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQA 66
>sp|A0RNM0|DAPE_CAMFF Succinyl-diaminopimelate desuccinylase OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=dapE PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 20 FKLQSQTTSCKTFAQSQRIGAEG--GGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTS 77
F L ++ TS TF + +IG G G VT + G ++ + ++ + QL S
Sbjct: 149 FALVAEPTSSSTFGDTIKIGRRGSVNGVVT-----INGVQGHAAYPEKCVNPVHQLASVF 203
Query: 78 SSLEGYESDGSSR-----KLTIRD 96
S GYE D S+ K+ I D
Sbjct: 204 SDFAGYELDSGSKYFGASKIVITD 227
>sp|Q0V9Q6|MCM8_XENTR DNA helicase MCM8 OS=Xenopus tropicalis GN=mcm8 PE=2 SV=1
Length = 843
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 77 SSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFL 125
+ +E Y+ D RK +I L+ D D SIP+ LK++ EK L
Sbjct: 96 TKQIELYDKDEIERKGSILVDYKDLLQDEDLSASIPMSSELKEMPEKIL 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,508,017
Number of Sequences: 539616
Number of extensions: 2095684
Number of successful extensions: 9817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 9590
Number of HSP's gapped (non-prelim): 271
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)