Query 030344
Match_columns 179
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 19:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 44.9 8.1 0.00028 31.7 1.5 37 134-170 263-300 (339)
2 2wzn_A TET3, 354AA long hypoth 34.5 39 0.0013 24.5 3.6 35 67-108 12-46 (354)
3 4h62_K Mediator of RNA polymer 32.2 26 0.00087 22.7 2.0 17 63-79 19-35 (40)
4 3arc_M Photosystem II reaction 29.0 29 0.00098 22.1 1.8 26 146-172 4-29 (36)
5 2iub_A CORA, divalent cation t 28.5 10 0.00034 31.5 -0.5 34 135-168 288-322 (363)
6 2ad6_B Methanol dehydrogenase 27.2 29 0.001 24.8 1.8 19 123-141 42-60 (69)
7 3t47_A SCIN-D; secreted, virul 25.0 80 0.0027 23.1 3.8 44 92-145 11-54 (81)
8 1w6s_B Methanol dehydrogenase 23.0 39 0.0013 24.4 1.8 19 123-141 42-60 (74)
9 3t46_A SCIN-D; secreted, virul 22.7 1.1E+02 0.0036 22.9 4.2 44 92-145 18-61 (91)
10 1lrw_B Methanol dehydrogenase 21.5 43 0.0015 24.6 1.8 19 123-141 42-60 (83)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.92 E-value=8.1 Score=31.72 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcc-CCcchhhhhhhhhccchHHHHHHHH
Q 030344 134 RRQAYLNEVSQR-NDSVFFATIGAFVILPPFIILGIAV 170 (179)
Q Consensus 134 kRQayL~~VsqR-nDs~fFAtigaFvllPPliIL~iAv 170 (179)
-+++|++.++.| |+.-...|+-+.+++||-+|-|+.-
T Consensus 263 l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGiyG 300 (339)
T 4ev6_A 263 MMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGIYG 300 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356788888755 8888899999999999998877653
No 2
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=34.49 E-value=39 Score=24.48 Aligned_cols=35 Identities=29% Similarity=0.591 Sum_probs=22.6
Q ss_pred HHHHHhhhcCCCCCCCcccCCCCccccHHHHHHHHHcCcCCc
Q 030344 67 LDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDE 108 (179)
Q Consensus 67 LDLLeqLTs~tss~~G~Es~~s~~~~TIreQLaal~ge~~~e 108 (179)
+|||++|.+. +|..|.|. .-|++-|.....+-+.+
T Consensus 12 ~elL~~Lv~i-pS~sg~E~------~~v~~~l~~~l~~~G~~ 46 (354)
T 2wzn_A 12 WKLMQEIIEA-PGVSGYEH------LGIRDIVVDVLKEVADE 46 (354)
T ss_dssp HHHHHHHHHS-CCBTTCGG------GTHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhcC-CCCCcchH------HHHHHHHHHHHHHcCCE
Confidence 5799999965 55556553 23677777666655444
No 3
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=32.19 E-value=26 Score=22.66 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=13.6
Q ss_pred hhhHHHHHHhhhcCCCC
Q 030344 63 AQTQLDLLEQLTSTSSS 79 (179)
Q Consensus 63 artqLDLLeqLTs~tss 79 (179)
-+.|||||+.+-.|+-+
T Consensus 19 meeqldllsaildpsks 35 (40)
T 4h62_K 19 MEEQLDLLSAILDPSKS 35 (40)
T ss_pred HHHHHHHHHHHcCcccc
Confidence 57899999999877543
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=28.98 E-value=29 Score=22.09 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=18.7
Q ss_pred CCcchhhhhhhhhccchHHHHHHHHHh
Q 030344 146 NDSVFFATIGAFVILPPFIILGIAVLT 172 (179)
Q Consensus 146 nDs~fFAtigaFvllPPliIL~iAv~t 172 (179)
|+-.|-|+ +.|+++|-...|...+.|
T Consensus 4 n~l~fiAt-~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 4 NQLGLIAT-ALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp CTTHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHhhee
Confidence 56666654 689999987777777665
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.48 E-value=10 Score=31.54 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=27.0
Q ss_pred HHHHHHHhhcc-CCcchhhhhhhhhccchHHHHHH
Q 030344 135 RQAYLNEVSQR-NDSVFFATIGAFVILPPFIILGI 168 (179)
Q Consensus 135 RQayL~~VsqR-nDs~fFAtigaFvllPPliIL~i 168 (179)
.++|++.++.| |+.....|+-+.+++||-+|-||
T Consensus 288 ~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 288 LDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888765 77778899999999999877655
No 6
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=27.22 E-value=29 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 030344 123 KFLTISQKRNIRRQAYLNE 141 (179)
Q Consensus 123 ~~lTiSQkRNikRQayL~~ 141 (179)
.++..-..||.+|-+++.+
T Consensus 42 ~si~ame~RN~kRv~~fkk 60 (69)
T 2ad6_B 42 ESIKAMDARNAKRIANAKS 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999876
No 7
>3t47_A SCIN-D; secreted, virulence, immune system; 1.30A {Staphylococcus aureus subsp} PDB: 3t48_A*
Probab=25.01 E-value=80 Score=23.13 Aligned_cols=44 Identities=32% Similarity=0.383 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHcCcCCcccccccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q 030344 92 LTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQR 145 (179)
Q Consensus 92 ~TIreQLaal~ge~~~eftiPlgk~lK~~a~~~lTiSQkRNikRQayL~~VsqR 145 (179)
.-|.|+|-.|..+-+-. +.+.-+|+.-|||+|.--.|-.+..=|
T Consensus 11 q~la~eL~~Ll~~~nvn----------~LA~~sLn~YyKR~Imm~~y~AK~Alk 54 (81)
T 3t47_A 11 QALVDQLHELIANTDLN----------KLSYLNLDAFQKRDILAAHYIAKSAIR 54 (81)
T ss_dssp HHHHHHHHHHHHHTCTG----------GGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH----------HHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 35788898888765443 455667999999999999998876544
No 8
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=22.97 E-value=39 Score=24.43 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 030344 123 KFLTISQKRNIRRQAYLNE 141 (179)
Q Consensus 123 ~~lTiSQkRNikRQayL~~ 141 (179)
.++..-..||.+|-+++.+
T Consensus 42 ~si~ame~RN~kRv~~fkk 60 (74)
T 1w6s_B 42 DSIKQMEERNKKRVENFKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778999999999876
No 9
>3t46_A SCIN-D; secreted, virulence, immune system; 1.50A {Staphylococcus aureus subsp}
Probab=22.69 E-value=1.1e+02 Score=22.88 Aligned_cols=44 Identities=32% Similarity=0.383 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHcCcCCcccccccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q 030344 92 LTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQR 145 (179)
Q Consensus 92 ~TIreQLaal~ge~~~eftiPlgk~lK~~a~~~lTiSQkRNikRQayL~~VsqR 145 (179)
.-|.|+|-.|..+-+-. +.+.-+|+.-|||+|.--.|-.+..=|
T Consensus 18 q~la~eL~~Ll~~~nvn----------~LA~~sLn~YyKR~Imm~~y~AK~Alk 61 (91)
T 3t46_A 18 QALVDQLHELIANTDLN----------KLSYLNLDAFQKRDILAAHYIAKSAIR 61 (91)
T ss_dssp HHHHHHHHHHHHTTCGG----------GCGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH----------HHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45889999998865443 455667999999999999998876544
No 10
>1lrw_B Methanol dehydrogenase subunit 2; heavy subunits: 8-fold beta-propeller superbarrel, oxidoreductase; HET: PQQ; 2.50A {Paracoccus denitrificans} SCOP: a.137.2.1
Probab=21.49 E-value=43 Score=24.64 Aligned_cols=19 Identities=21% Similarity=0.220 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 030344 123 KFLTISQKRNIRRQAYLNE 141 (179)
Q Consensus 123 ~~lTiSQkRNikRQayL~~ 141 (179)
.++..-..||.+|-+++.+
T Consensus 42 ~si~ame~RN~kRv~~fkk 60 (83)
T 1lrw_B 42 ESLAVMDARNEWRVWNMKK 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778999999999876
Done!