BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030345
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X55|A Chain A, Yersinia Pestis Plasminogen Activator Pla (Native)
          Length = 293

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 114 SLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLN 167
           ++AA+ G+ +GK    L  AE    +    W +  +A++  DI    +S + LN
Sbjct: 15  TVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLN 68


>pdb|4DCB|A Chain A, Y. Pestis Plasminogen Activator Pla In Complex With Human
           Plasminogen Activation Loop Peptide Alp11
          Length = 297

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 114 SLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLN 167
           ++AA+ G+ +GK    L  AE    +    W +  +A++  DI    +S + LN
Sbjct: 11  TVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLN 64


>pdb|2X56|A Chain A, Yersinia Pestis Plasminogen Activator Pla (Native)
          Length = 292

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 114 SLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLN 167
           ++AA+ G+ +GK    L  AE    +    W +  +A++  DI    +S + LN
Sbjct: 15  TVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLN 68


>pdb|2X4M|A Chain A, Yersinia Pestis Plasminogen Activator Pla
 pdb|2X4M|B Chain B, Yersinia Pestis Plasminogen Activator Pla
 pdb|2X4M|C Chain C, Yersinia Pestis Plasminogen Activator Pla
 pdb|2X4M|D Chain D, Yersinia Pestis Plasminogen Activator Pla
          Length = 298

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 114 SLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLN 167
           ++AA+ G+ +GK    L  AE    +    W +  +A++  DI    +S + LN
Sbjct: 15  TVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLN 68


>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
          Length = 963

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 24  SNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPG 71
           SN++A +++ G     N+ T+ D  HH DD  H+ P  R+     GP 
Sbjct: 632 SNKLAIVHILGLLS--NLFTTLDISHHEDD--HEGPELRKLPVPQGPN 675


>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
          Length = 963

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 24  SNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPG 71
           SN++A +++ G     N+ T+ D  HH DD  H+ P  R+     GP 
Sbjct: 632 SNKLAIVHILGLLS--NLFTTLDISHHEDD--HEGPELRKLPVPQGPN 675


>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
 pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
          Length = 553

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 124 GKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSII 164
           GKHL+    +  P +V+ CLW L  ++ +A    EG+ S++
Sbjct: 235 GKHLT----SNSPRLVQNCLWTLRNLSDVATK-QEGLESVL 270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,588,269
Number of Sequences: 62578
Number of extensions: 223431
Number of successful extensions: 287
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 10
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)