Query 030345
Match_columns 179
No_of_seqs 152 out of 1245
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 12:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 1E-38 2.2E-43 291.8 9.5 123 56-178 20-142 (503)
2 COG1914 MntH Mn2+ and Fe2+ tra 100.0 3.9E-35 8.5E-40 266.5 12.0 121 57-177 9-129 (416)
3 PRK00701 manganese transport p 100.0 5.2E-35 1.1E-39 266.3 12.8 136 35-177 11-146 (439)
4 TIGR01197 nramp NRAMP (natural 100.0 4.9E-33 1.1E-37 250.5 10.6 116 62-177 1-116 (390)
5 PF01566 Nramp: Natural resist 99.9 3.8E-23 8.1E-28 181.9 8.2 94 84-177 1-94 (358)
6 PF00474 SSF: Sodium:solute sy 97.3 0.0028 6E-08 56.4 10.5 103 74-176 17-122 (406)
7 TIGR00813 sss transporter, SSS 97.1 0.0032 7E-08 56.2 8.9 103 72-177 12-119 (407)
8 TIGR02119 panF sodium/pantothe 97.0 0.0044 9.6E-08 56.6 9.4 104 74-177 51-160 (471)
9 TIGR02711 symport_actP cation/ 97.0 0.004 8.6E-08 58.6 9.0 107 71-178 75-184 (549)
10 PRK09395 actP acetate permease 96.9 0.005 1.1E-07 57.9 9.0 107 71-177 77-185 (551)
11 PRK12488 acetate permease; Pro 96.9 0.005 1.1E-07 58.0 8.8 107 71-178 75-184 (549)
12 PRK09442 panF sodium/panthothe 96.8 0.0093 2E-07 54.8 9.7 102 76-177 54-161 (483)
13 PRK15419 proline:sodium sympor 96.4 0.014 2.9E-07 54.2 8.2 104 74-177 51-163 (502)
14 TIGR03648 Na_symport_lg probab 96.3 0.02 4.3E-07 53.8 8.4 104 72-178 41-149 (552)
15 TIGR02121 Na_Pro_sym sodium/pr 96.1 0.038 8.3E-07 51.0 9.2 102 76-177 49-159 (487)
16 COG0591 PutP Na+/proline sympo 95.8 0.051 1.1E-06 50.7 8.7 109 67-176 39-157 (493)
17 PF02554 CstA: Carbon starvati 94.8 0.38 8.3E-06 44.3 10.9 69 62-143 60-132 (376)
18 COG4145 PanF Na+/panthothenate 93.7 0.47 1E-05 44.3 9.0 105 71-177 47-159 (473)
19 PRK11017 codB cytosine permeas 93.3 1.3 2.8E-05 40.2 11.1 112 56-173 8-119 (404)
20 PRK10484 putative transporter; 92.3 1.1 2.4E-05 41.8 9.6 103 74-176 49-159 (523)
21 PF03222 Trp_Tyr_perm: Tryptop 92.2 1.7 3.6E-05 39.6 10.4 103 67-170 5-110 (394)
22 COG4147 DhlC Predicted symport 91.9 1.5 3.2E-05 42.0 9.8 65 115-179 94-159 (529)
23 TIGR00800 ncs1 NCS1 nucleoside 91.6 2.4 5.2E-05 38.6 10.8 57 96-152 47-103 (442)
24 PRK11375 allantoin permease; P 91.4 4.3 9.3E-05 37.9 12.4 47 97-143 61-107 (484)
25 PF02133 Transp_cyt_pur: Perme 91.2 1.5 3.1E-05 39.6 8.9 75 79-154 23-100 (440)
26 COG1966 CstA Carbon starvation 91.1 1.9 4.2E-05 41.7 9.9 71 62-145 60-134 (575)
27 COG3949 Uncharacterized membra 89.1 2 4.4E-05 39.2 7.8 112 61-177 6-118 (349)
28 TIGR00814 stp serine transport 86.8 4.8 0.0001 36.8 9.0 49 99-147 33-88 (397)
29 PRK15015 carbon starvation pro 85.4 6.2 0.00014 39.1 9.3 69 62-143 91-163 (701)
30 TIGR01773 GABAperm gamma-amino 84.0 25 0.00053 31.8 12.2 74 66-143 20-94 (452)
31 TIGR02358 thia_cytX probable h 82.6 12 0.00027 33.7 9.6 58 96-153 29-86 (386)
32 PF01235 Na_Ala_symp: Sodium:a 82.1 19 0.0004 33.7 10.7 100 77-176 31-141 (416)
33 PRK10249 phenylalanine transpo 80.8 30 0.00066 31.6 11.6 98 66-167 29-127 (458)
34 PRK13629 threonine/serine tran 80.2 14 0.00031 34.8 9.3 78 72-149 26-106 (443)
35 PRK15132 tyrosine transporter 79.8 28 0.0006 32.1 11.0 92 66-157 4-97 (403)
36 PRK11387 S-methylmethionine tr 78.3 54 0.0012 29.9 12.6 72 67-142 23-96 (471)
37 PRK11049 D-alanine/D-serine/gl 76.7 43 0.00093 30.6 11.3 72 68-143 30-102 (469)
38 PRK10580 proY putative proline 73.2 63 0.0014 29.3 11.4 69 67-143 18-91 (457)
39 COG1113 AnsP Gamma-aminobutyra 71.7 47 0.001 31.7 10.3 80 91-170 41-122 (462)
40 TIGR00837 araaP aromatic amino 70.5 34 0.00074 30.0 8.8 39 105-145 41-79 (381)
41 PF03845 Spore_permease: Spore 70.1 70 0.0015 27.5 10.5 45 100-144 36-81 (320)
42 COG1953 FUI1 Cytosine/uracil/t 69.0 70 0.0015 30.8 10.9 63 80-142 53-120 (497)
43 PRK10483 tryptophan permease; 68.3 30 0.00064 32.2 8.2 81 65-147 11-95 (414)
44 COG1457 CodB Purine-cytosine p 67.4 9.8 0.00021 35.8 4.9 66 94-160 51-116 (442)
45 TIGR00796 livcs branched-chain 66.4 26 0.00057 32.0 7.4 73 71-144 1-73 (378)
46 TIGR00909 2A0306 amino acid tr 65.3 68 0.0015 28.5 9.7 35 106-142 50-84 (429)
47 PF01914 MarC: MarC family int 64.0 14 0.00031 30.7 4.8 53 79-131 122-179 (203)
48 PRK09664 tryptophan permease T 62.5 60 0.0013 30.3 9.0 80 66-147 10-93 (415)
49 PF11654 DUF2665: Protein of u 61.1 18 0.0004 24.0 3.9 38 98-138 9-46 (47)
50 TIGR03810 arg_ornith_anti argi 59.0 1.4E+02 0.0031 27.2 10.8 40 102-142 45-84 (468)
51 PRK10746 putative transport pr 58.8 1.5E+02 0.0032 27.2 12.1 73 67-143 19-92 (461)
52 COG0814 SdaC Amino acid permea 58.1 1.1E+02 0.0025 27.9 10.0 84 72-156 16-103 (415)
53 TIGR00908 2A0305 ethanolamine 57.3 1.5E+02 0.0032 26.7 12.4 38 104-143 52-89 (442)
54 TIGR00905 2A0302 transporter, 57.1 1.1E+02 0.0025 27.8 9.8 34 108-142 57-90 (473)
55 PRK15049 L-asparagine permease 56.5 1.7E+02 0.0037 27.2 13.4 73 67-143 37-110 (499)
56 TIGR00912 2A0309 spore germina 55.7 1.3E+02 0.0027 26.2 9.5 70 68-143 11-82 (359)
57 TIGR00913 2A0310 amino acid pe 55.4 1.6E+02 0.0035 26.7 10.9 74 67-143 11-86 (478)
58 PRK11463 fxsA phage T7 F exclu 53.0 1.2E+02 0.0025 24.3 8.6 87 83-173 15-103 (148)
59 TIGR00910 2A0307_GadC glutamat 52.9 72 0.0016 29.8 7.9 50 92-142 29-83 (507)
60 PRK10238 aromatic amino acid t 52.8 1.8E+02 0.004 26.5 12.7 101 66-170 20-121 (456)
61 PRK10197 gamma-aminobutyrate t 49.4 2E+02 0.0043 26.1 10.1 35 107-143 40-74 (446)
62 TIGR00427 membrane protein, Ma 48.1 29 0.00062 29.0 4.1 32 101-132 151-182 (201)
63 PF05525 Branch_AA_trans: Bran 46.4 1.3E+02 0.0028 28.2 8.5 75 71-147 9-84 (427)
64 PRK10644 arginine:agmatin anti 45.7 2.3E+02 0.005 25.5 11.7 70 68-142 18-88 (445)
65 COG2095 MarC Multiple antibiot 44.8 38 0.00083 28.6 4.3 52 79-130 121-175 (203)
66 TIGR00930 2a30 K-Cl cotranspor 44.0 2.2E+02 0.0048 29.3 10.3 49 122-170 140-188 (953)
67 PRK15433 branched-chain amino 43.9 1.6E+02 0.0034 27.9 8.6 77 70-147 13-89 (439)
68 PRK10739 putative antibiotic t 42.4 1.6E+02 0.0036 24.5 7.8 30 102-131 142-171 (197)
69 PTZ00206 amino acid transporte 41.7 2.9E+02 0.0063 25.6 13.3 35 125-159 121-155 (467)
70 TIGR00835 agcS amino acid carr 39.6 3.2E+02 0.0069 25.6 9.9 67 76-142 58-134 (425)
71 COG0805 TatC Sec-independent p 36.6 27 0.00059 30.6 2.3 49 81-129 146-195 (255)
72 COG1114 BrnQ Branched-chain am 36.4 2.1E+02 0.0046 27.1 8.2 74 70-144 10-83 (431)
73 KOG4827 Uncharacterized conser 33.4 22 0.00048 30.8 1.2 37 57-93 238-275 (279)
74 PHA01080 hypothetical protein 32.5 51 0.0011 24.2 2.8 27 86-112 45-71 (80)
75 PRK10435 cadB lysine/cadaverin 32.4 3.8E+02 0.0082 24.2 11.2 69 68-142 15-84 (435)
76 PRK09877 2,3-diketo-L-gulonate 30.3 2.7E+02 0.0058 21.8 7.2 68 87-154 21-91 (157)
77 PF01566 Nramp: Natural resist 29.7 1.6E+02 0.0035 26.0 6.1 90 85-174 199-289 (358)
78 PRK11111 hypothetical protein; 28.9 87 0.0019 26.5 4.1 54 79-132 128-186 (214)
79 PF04186 FxsA: FxsA cytoplasmi 26.8 2.9E+02 0.0063 21.1 8.9 85 84-172 12-98 (119)
80 TIGR03813 put_Glu_GABA_T putat 24.8 5.3E+02 0.012 23.4 9.3 69 68-142 6-79 (474)
81 KOG4812 Golgi-associated prote 23.7 3.7E+02 0.0079 23.9 7.0 34 95-128 160-201 (262)
82 KOG1443 Predicted integral mem 23.4 56 0.0012 30.0 2.0 29 57-85 76-104 (349)
83 PF05437 AzlD: Branched-chain 22.1 3E+02 0.0066 19.6 6.0 22 57-78 28-49 (99)
84 PRK11021 putative transporter; 21.7 5.7E+02 0.012 22.6 11.7 36 105-142 45-80 (410)
85 PRK15238 inner membrane transp 20.6 6.7E+02 0.015 23.0 9.8 74 65-142 9-87 (496)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=291.82 Aligned_cols=123 Identities=54% Similarity=0.910 Sum_probs=120.1
Q ss_pred CCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHc
Q 030345 56 HKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEY 135 (179)
Q Consensus 56 ~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~ 135 (179)
..+.+|||+++++||||++++||+||||+.|+.|+||++||+|||++++++++++++|++|+|+|+||||+|+|.||++|
T Consensus 20 ~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Y 99 (503)
T KOG1291|consen 20 PPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEY 99 (503)
T ss_pred ccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345 136 PIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPST 178 (179)
Q Consensus 136 gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~ 178 (179)
+|+.++.+|+.+|++.+++|++|++|+|+|+|+||++|.+.|+
T Consensus 100 pk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GV 142 (503)
T KOG1291|consen 100 PKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGV 142 (503)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHH
Confidence 9999999999999999999999999999999999999988775
No 2
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=266.50 Aligned_cols=121 Identities=45% Similarity=0.711 Sum_probs=117.2
Q ss_pred CchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcC
Q 030345 57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP 136 (179)
Q Consensus 57 ~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~g 136 (179)
+..+||++++++|||++++++|+||||++|++++|++|||+|+|++++++++++++|++++|+|++|||+++|.|||||+
T Consensus 9 ~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~ 88 (416)
T COG1914 9 KRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYL 88 (416)
T ss_pred hHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 137 k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
|++.+++|+.++++++++|++|++|+|+|+|++||+|+..+
T Consensus 89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g 129 (416)
T COG1914 89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIG 129 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999999999999999999999997655
No 3
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=5.2e-35 Score=266.33 Aligned_cols=136 Identities=38% Similarity=0.750 Sum_probs=125.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 030345 35 RTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQS 114 (179)
Q Consensus 35 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~ 114 (179)
.+|.+|.|.+...+ ++++.+|++++++|||++++++|+||||++|++++||+|||+|||++++++++++++|+
T Consensus 11 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~ 83 (439)
T PRK00701 11 PFSLSEVNGSVAVS-------SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS 83 (439)
T ss_pred CCChhhhcccccCC-------CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 34455666655555 34567999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 115 LAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 115 ~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
+++|+|++|||+++|.||+||||++++++|+.+++++++++++|++|+++|+|++||+|.+++
T Consensus 84 ~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~ 146 (439)
T PRK00701 84 LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQG 146 (439)
T ss_pred HHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996654
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=4.9e-33 Score=250.55 Aligned_cols=116 Identities=50% Similarity=0.877 Sum_probs=111.6
Q ss_pred HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHH
Q 030345 62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKY 141 (179)
Q Consensus 62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~ 141 (179)
|++++++|||++++++|+||||++|++++||+|||+|||++++++++++++|++++|+|++|||+++|.|||+|||+..+
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 142 CLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 142 ~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
.+|+.++++.++++++|++|+++|+|++||+|.+.+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~ 116 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGG 116 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999999999999999999999999996543
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=99.88 E-value=3.8e-23 Score=181.89 Aligned_cols=94 Identities=35% Similarity=0.461 Sum_probs=90.8
Q ss_pred hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 84 LETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSI 163 (179)
Q Consensus 84 i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~a 163 (179)
|+|++++||+|||+|||++++++++++++|++++|+|++|||++.|.+|+||||++.+++|+.+++++++++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC
Q 030345 164 IFLNILLRYMHAPS 177 (179)
Q Consensus 164 iaL~lLfgip~~~~ 177 (179)
+|+|+++|+|.++.
T Consensus 81 ~al~ll~g~~~~~~ 94 (358)
T PF01566_consen 81 IALNLLFGIPLWIW 94 (358)
T ss_pred HHHHhhcCCCcHHH
Confidence 99999999997543
No 6
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.27 E-value=0.0028 Score=56.38 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=76.0
Q ss_pred hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHhHcCchH--HHHHHHHHHHH
Q 030345 74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII-QSLAANLGVSTGKHLSELCKAEYPIIV--KYCLWLLAEIA 150 (179)
Q Consensus 74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l-Q~~aaRlgivTG~~L~e~ir~~~gk~~--~~~l~i~~~l~ 150 (179)
..+..++.+++.-....+.++|+.-+|..+...+...++ -.++-|+-.....|+.|.+++|||++. +.+..+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345578888888899999999999999887766665544 346788888888999999999999988 55555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Q 030345 151 VIAADIPEGIFSIIFLNILLRYMHAP 176 (179)
Q Consensus 151 ~i~t~laeiiG~aiaL~lLfgip~~~ 176 (179)
.+....+++.|.+..++.++|+|...
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~ 122 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNT 122 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHH
T ss_pred hhhhhhccccccccchhhccchhhhH
Confidence 66677788899999999999998543
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.08 E-value=0.0032 Score=56.25 Aligned_cols=103 Identities=10% Similarity=0.025 Sum_probs=72.7
Q ss_pred HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH----HHHHHhHhhhhcCCCHHHHHHhHcCch-HHHHHHHH
Q 030345 72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI----IQSLAANLGVSTGKHLSELCKAEYPII-VKYCLWLL 146 (179)
Q Consensus 72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~----lQ~~aaRlgivTG~~L~e~ir~~~gk~-~~~~l~i~ 146 (179)
+-+++.+++.++.......+.++|+..+|..+...+..++ +...--|.+ ..++.|.+++||+++ .+.+.-+.
T Consensus 12 ~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~ 88 (407)
T TIGR00813 12 ASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLS 88 (407)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHH
Confidence 3345668888888889999999998887765544433332 222223333 689999999999985 44443444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
..+..+..-.+++.|.+..++.++|+|+..+
T Consensus 89 ~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~ 119 (407)
T TIGR00813 89 LILYIFLYMSVDLFSGALLIELITGLDLYLS 119 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 5556666777888999999999999996544
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.02 E-value=0.0044 Score=56.59 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=65.9
Q ss_pred hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHh---hh-hcCCCHHHHHHhHcCch-HHHHHHHHH
Q 030345 74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANL---GV-STGKHLSELCKAEYPII-VKYCLWLLA 147 (179)
Q Consensus 74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRl---gi-vTG~~L~e~ir~~~gk~-~~~~l~i~~ 147 (179)
+.+++++.+++......+.++|+...|......++.++ +-.++.|+ +- ..-.|+.|.+++||+++ .+++..+..
T Consensus 51 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~ 130 (471)
T TIGR02119 51 LVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISL 130 (471)
T ss_pred HHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHH
Confidence 44567888888888888888887643332222222221 11122232 11 13469999999999955 455545555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 148 EIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
.+..+....+++.|.+..++.++|+|...+
T Consensus 131 i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~ 160 (471)
T TIGR02119 131 LVFFFSAMVAQFIGGARLIESLTGLSYLTA 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 555666667888999999999999996554
No 9
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.99 E-value=0.004 Score=58.63 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=75.7
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH--HHHHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL--IIQSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLA 147 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~--~lQ~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~ 147 (179)
|+-+++.+++..++.-......++|++-+|..+ +.++.+ ..-.++-|+-.....|+.|.+++||+ |..+.+..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 334555677777777777788889998877553 332222 12234555555556899999999996 55676666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345 148 EIAVIAADIPEGIFSIIFLNILLRYMHAPST 178 (179)
Q Consensus 148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~~ 178 (179)
.+..+..-.+++.|.+..++.++|+|+..++
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~i 184 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAV 184 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 6666777788889999999999999976543
No 10
>PRK09395 actP acetate permease; Provisional
Probab=96.91 E-value=0.005 Score=57.88 Aligned_cols=107 Identities=10% Similarity=-0.030 Sum_probs=75.0
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLAE 148 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~~ 148 (179)
|+-+.+.++...++......+..+|+.-.|..+-..+...+ .-..+-|+=-..-.|..|.+++||+ |+.+.+..+...
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~i 156 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSL 156 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHH
Confidence 34455667888888888888888898876654422221111 1223555555556899999999998 456776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 149 IAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 149 l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
+..+..-.+++.|.+..++.++|+|++.+
T Consensus 157 v~~~~yl~~q~~g~g~il~~~~gi~~~~~ 185 (551)
T PRK09395 157 VVVALYLIAQMVGAGKLIQLLFGLNYHVA 185 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 67777778889999999999999997654
No 11
>PRK12488 acetate permease; Provisional
Probab=96.89 E-value=0.005 Score=57.99 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=77.6
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH--HHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII--QSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLA 147 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l--Q~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~ 147 (179)
|+-+++.++...++.-....+..+|+.-+|..+ +..+.+++ -.++-|+--..-.|+.|.+++||+ |+.+.+..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 444566678888888888888889998877653 23322221 234555544445799999999998 56777766777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345 148 EIAVIAADIPEGIFSIIFLNILLRYMHAPST 178 (179)
Q Consensus 148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~~ 178 (179)
.+..+..-.+++.|.+..++.++|+|+..++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~i 184 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAV 184 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777788888999999999999999976553
No 12
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.80 E-value=0.0093 Score=54.84 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=63.9
Q ss_pred HhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHh---h-hhcCCCHHHHHHhHcCchH-HHHHHHHHHH
Q 030345 76 LAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL-IIQSLAANL---G-VSTGKHLSELCKAEYPIIV-KYCLWLLAEI 149 (179)
Q Consensus 76 aa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~-~lQ~~aaRl---g-ivTG~~L~e~ir~~~gk~~-~~~l~i~~~l 149 (179)
+.+++.+++........++|+...|..+...+..+ .+..++.|+ + -.-..|..|.+++||+++. +++..+...+
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~ 133 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLV 133 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHH
Confidence 55677777777777778888775554332222111 111122222 1 1235789999999999764 4443333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 150 AVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 150 ~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
..+.....++.|.+..++.++|+|+..+
T Consensus 134 ~~~~~~~~ql~~~g~~l~~~~gi~~~~~ 161 (483)
T PRK09442 134 FFFAAMTAQFIGGARLLETATGISYETG 161 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4555667788899999999999997654
No 13
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.43 E-value=0.014 Score=54.24 Aligned_cols=104 Identities=11% Similarity=-0.040 Sum_probs=68.4
Q ss_pred hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHhhhhc-----CCCHHHHHHhHcCc---hHHHHHH
Q 030345 74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL-IIQSLAANLGVST-----GKHLSELCKAEYPI---IVKYCLW 144 (179)
Q Consensus 74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~-~lQ~~aaRlgivT-----G~~L~e~ir~~~gk---~~~~~l~ 144 (179)
+.+.++...++.-....+.++|+...|..+-..+..+ ....+..|+-+-+ -.|+.|.+++||++ .++.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3445777777777777888889888776653333222 2333455655332 25899999999985 3443334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 145 LLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 145 i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
+...+..+....+++.|.+..++.++|+|...+
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~ 163 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETA 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 444444555566777889999999999996654
No 14
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.26 E-value=0.02 Score=53.81 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=71.2
Q ss_pred HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHH---HHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCch-HHHHHHHH
Q 030345 72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVL---IGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPII-VKYCLWLL 146 (179)
Q Consensus 72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvl---ls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~-~~~~l~i~ 146 (179)
+-+.+.++...++.-....+.++||..+|..+ ++. ++.+++-..--|.+. .|+.|.+++||+++ .+.+..+.
T Consensus 41 ~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i~ 117 (552)
T TIGR03648 41 MATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVIC 117 (552)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHHH
Confidence 33455567777777777777888887766653 111 233444555556654 58999999999854 45555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345 147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPST 178 (179)
Q Consensus 147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~ 178 (179)
..+..+.....++.|.+..++.++|+|+..++
T Consensus 118 ~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~i 149 (552)
T TIGR03648 118 AIFISFTYVAGQMRGVGVVFSRFLEVDFETGV 149 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 55666677777888999999999999976553
No 15
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.08 E-value=0.038 Score=51.00 Aligned_cols=102 Identities=13% Similarity=-0.023 Sum_probs=61.7
Q ss_pred HhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHhhhhc-----CCCHHHHHHhHcCch---HHHHHHHH
Q 030345 76 LAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANLGVST-----GKHLSELCKAEYPII---VKYCLWLL 146 (179)
Q Consensus 76 aa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRlgivT-----G~~L~e~ir~~~gk~---~~~~l~i~ 146 (179)
+.++...++.-......++|+.-.|..+-..+..++ .-..+-|+-..+ -.|+.|.+++||+++ .+.+..+.
T Consensus 49 At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~ 128 (487)
T TIGR02121 49 ASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALI 128 (487)
T ss_pred HHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHH
Confidence 445555555555666777888777775422222221 122344444333 357999999999853 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
..+..+.....++.|.+..++.++|+|+..+
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~ 159 (487)
T TIGR02121 129 ILVFFTIYTSSGLVAGGKLFESTFGLDYKTG 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 4444445566777888999999999997654
No 16
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=95.79 E-value=0.051 Score=50.73 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=77.5
Q ss_pred hhchhHhhhHh--hcCCCchhhhhhHHhhh--hhhHHHHHHHHHHHHH-HHHHHHhHhhhhc----CCCHHHHHHhHcC-
Q 030345 67 FVGPGFLVSLA--YLDPGNLETDLQAGANH--RYELLWVVLIGLIFAL-IIQSLAANLGVST----GKHLSELCKAEYP- 136 (179)
Q Consensus 67 ~lGPG~lvaaa--~idPG~i~T~~~aGA~f--GY~LLWvvlls~i~~~-~lQ~~aaRlgivT----G~~L~e~ir~~~g- 136 (179)
.+||. +.+.+ .-|-+.++.--..|.-| |+.-+|..+...+..+ ..-..+-|+=..+ =.++.|.+++||+
T Consensus 39 ~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s 117 (493)
T COG0591 39 SLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGS 117 (493)
T ss_pred cCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCC
Confidence 46666 33322 34444555555555555 9999999888744444 4444555666666 5699999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 030345 137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAP 176 (179)
Q Consensus 137 k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~ 176 (179)
+..+.+.-+...+..+.....++.|.+..++..+|++...
T Consensus 118 ~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~ 157 (493)
T COG0591 118 KILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVT 157 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH
Confidence 7777777777777888888888899999999999987543
No 17
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.83 E-value=0.38 Score=44.28 Aligned_cols=69 Identities=26% Similarity=0.406 Sum_probs=48.5
Q ss_pred HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhh--HHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345 62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYE--LLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI 137 (179)
Q Consensus 62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~--LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk 137 (179)
+++...-|.|-|++ -..|+.|||- +||++ +.+++.-.+|++.+=..-+ -||++.|.++++.||
T Consensus 60 hhf~sIAGaGPI~G------------Pi~aa~~GwlPa~lWI~-~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~ 126 (376)
T PF02554_consen 60 HHFASIAGAGPIVG------------PILAAQFGWLPALLWIV-FGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGK 126 (376)
T ss_pred HHHHHHhccccchH------------HHHHHHhcchHHHHHHH-HccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHH
Confidence 45666556666653 2345999997 77765 5667777777766655444 699999999999999
Q ss_pred hHHHHH
Q 030345 138 IVKYCL 143 (179)
Q Consensus 138 ~~~~~l 143 (179)
+.+.++
T Consensus 127 ~~~~lf 132 (376)
T PF02554_consen 127 RAKKLF 132 (376)
T ss_pred HHHHHH
Confidence 776653
No 18
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=93.68 E-value=0.47 Score=44.31 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=66.0
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHH-HHHH--HHHHHHhHhhhhcCC----CHHHHHHhHc-CchHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGL-IFAL--IIQSLAANLGVSTGK----HLSELCKAEY-PIIVKYC 142 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~-i~~~--~lQ~~aaRlgivTG~----~L~e~ir~~~-gk~~~~~ 142 (179)
++..++.|+...+...- -|+.|.|.|-|+++-.. +... .+--+.-|+.+.++| ++.|.+|+|| ++...++
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~l 124 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWL 124 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHH
Confidence 44445556665555443 36778888889554332 1111 222333444444443 7899999998 4555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 143 LWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 143 l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
.-+..-+.-+....++++|.|=-++-..|+|+..+
T Consensus 125 as~~Lifff~~~m~~qfiGgarLlE~~~gidY~tg 159 (473)
T COG4145 125 ASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTG 159 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhh
Confidence 55555556666677888999999999999997654
No 19
>PRK11017 codB cytosine permease; Provisional
Probab=93.27 E-value=1.3 Score=40.21 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHc
Q 030345 56 HKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEY 135 (179)
Q Consensus 56 ~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~ 135 (179)
+++..|.-++-++|-++..+....+. .+..|-.+. +-++++++++++..++.-+.++.|..+|.+-....|..|
T Consensus 8 ~r~~~~~~~~~~~g~~~~~~~~~~g~-----~l~~GLs~~-~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~F 81 (404)
T PRK11017 8 ARKGVLSLTMVMLGFTFFSASMWAGG-----TLGTGLSFV-DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSF 81 (404)
T ss_pred HhcchHhHHHHHHHHHHHHHHHHHHH-----HHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHh
Confidence 34444444667777555543332211 111233332 345788888888899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 030345 136 PIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYM 173 (179)
Q Consensus 136 gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip 173 (179)
|.+-+++..+...+..++-..-|..=.+.+++-++|++
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~ 119 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLD 119 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC
Confidence 98776654444333333222212111234455556665
No 20
>PRK10484 putative transporter; Provisional
Probab=92.31 E-value=1.1 Score=41.84 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=55.2
Q ss_pred hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHH
Q 030345 74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII-QSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVI 152 (179)
Q Consensus 74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l-Q~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i 152 (179)
+.+.++..+++.-....+.++|+..+|..+...+...++ -..+.|+--.-=.|..|.+++||+++.....-+...+..+
T Consensus 49 l~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~ 128 (523)
T PRK10484 49 LLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYV 128 (523)
T ss_pred HHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 445568888888888888888877653333222222111 1123344322335899999999998766544333333333
Q ss_pred HHHHHHH-HHHHHHHHH------HhCCCCCC
Q 030345 153 AADIPEG-IFSIIFLNI------LLRYMHAP 176 (179)
Q Consensus 153 ~t~laei-iG~aiaL~l------Lfgip~~~ 176 (179)
...++.. .+.+++++- ++|+|+..
T Consensus 129 ~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~ 159 (523)
T PRK10484 129 VSFLPIVLYSGALALNSLFHVSELLGISYGA 159 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence 3333222 233444443 46776543
No 21
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=92.22 E-value=1.7 Score=39.58 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=67.6
Q ss_pred hhchhHhhhHhhcCCCchhhhhh-HHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhc--CCCHHHHHHhHcCchHHHHH
Q 030345 67 FVGPGFLVSLAYLDPGNLETDLQ-AGANHRYELLWVVLIGLIFALIIQSLAANLGVST--GKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 67 ~lGPG~lvaaa~idPG~i~T~~~-aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivT--G~~L~e~ir~~~gk~~~~~l 143 (179)
.+|-.++++-..+|.|=+.-=.+ +++.|.+.+ .+++++.++++.-+.+-+|+-..+ +.++.+..+|++||+++++.
T Consensus 5 ~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~-~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 5 ILGGVLLIAGTAIGAGMLALPIATAGAGFLPSL-ILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred HHHHHHHHHHccHhHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 45666667666788887777665 444455544 555556666677777777777655 78999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030345 144 WLLAEIAVIAADIPEGIFSIIFLNILL 170 (179)
Q Consensus 144 ~i~~~l~~i~t~laeiiG~aiaL~lLf 170 (179)
++...+.......+-+.|.+--+.-++
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l 110 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLL 110 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 766555544444444444443333333
No 22
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=91.86 E-value=1.5 Score=42.02 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=53.8
Q ss_pred HHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 030345 115 LAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI 179 (179)
Q Consensus 115 ~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~~ 179 (179)
.+-|+-=.-+-+.+|.+.+||. ++.+++..+..-++.+.+.++++.|++.-+.+++|+|..++++
T Consensus 94 ~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ 159 (529)
T COG4147 94 IAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVV 159 (529)
T ss_pred HHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehh
Confidence 3445555557789999999995 6777777788888888899999999999999999999988864
No 23
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=91.62 E-value=2.4 Score=38.63 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHH
Q 030345 96 YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVI 152 (179)
Q Consensus 96 Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i 152 (179)
++-++++++++++..++..+.++.|..+|.+-....|..||.+-+++..+...+..+
T Consensus 47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~i 103 (442)
T TIGR00800 47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAI 103 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHH
Confidence 345678888889999999999999999999999999999998776654444333333
No 24
>PRK11375 allantoin permease; Provisional
Probab=91.41 E-value=4.3 Score=37.94 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 97 ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 97 ~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
+.++++++++++..++-.+.++.|..+|.+..-..|..||.+-+++.
T Consensus 61 ~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 61 SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 45788889999999999999999999999999999999997765543
No 25
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=91.24 E-value=1.5 Score=39.57 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=48.4
Q ss_pred cCCCchhhhhhHHhhhhh---hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHH
Q 030345 79 LDPGNLETDLQAGANHRY---ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAA 154 (179)
Q Consensus 79 idPG~i~T~~~aGA~fGY---~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t 154 (179)
+-..++.+-... ..||. +-+.++++++++..++-...+++|..||.+-....|..||.+-+++.-++..+..++-
T Consensus 23 ~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW 100 (440)
T PF02133_consen 23 ISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAIGW 100 (440)
T ss_dssp -SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHHHHH
Confidence 333444444443 44553 3567888889999999999999999999999999999999876665544443444433
No 26
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=91.14 E-value=1.9 Score=41.69 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=50.1
Q ss_pred HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345 62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRY--ELLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI 137 (179)
Q Consensus 62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY--~LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk 137 (179)
++|.+.-|-|-+++ -..+|+||| .+||++ +.++++-.+|++-.=.--+ -|+++.|..+++.|+
T Consensus 60 hHFaaIAGAGPivG------------PvlAAq~G~Lp~~LWIl-~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~ 126 (575)
T COG1966 60 HHFASIAGAGPIVG------------PALAAQYGWLPAFLWIL-LGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGR 126 (575)
T ss_pred HHHHHHhccCcchh------------HHHHHHhcCcHHHHHHH-HhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhh
Confidence 56666666666663 356899997 678865 6777777777764432222 589999999999999
Q ss_pred hHHHHHHH
Q 030345 138 IVKYCLWL 145 (179)
Q Consensus 138 ~~~~~l~i 145 (179)
..+.+..+
T Consensus 127 ~a~~~~~~ 134 (575)
T COG1966 127 TAKVFFLL 134 (575)
T ss_pred hHHHHHHH
Confidence 87766443
No 27
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=89.05 E-value=2 Score=39.25 Aligned_cols=112 Identities=8% Similarity=0.026 Sum_probs=81.8
Q ss_pred HHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhHcCchH
Q 030345 61 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVS-TGKHLSELCKAEYPIIV 139 (179)
Q Consensus 61 ~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv-TG~~L~e~ir~~~gk~~ 139 (179)
.|..+.++| .+++++|---=++. |-=..||+.-.|-+++++++..+.-....++|-. .-++..|.++...||++
T Consensus 6 ~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence 345566666 55555553322332 3335689999999999999988888888888866 45678888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 140 KYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 140 ~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
+...=+...+..+.+..-+..|++..+|=-||+|.+++
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiG 118 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIG 118 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHH
Confidence 88876666666667776677788877777899998876
No 28
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=86.84 E-value=4.8 Score=36.79 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH------hhhhc-CCCHHHHHHhHcCchHHHHHHHHH
Q 030345 99 LWVVLIGLIFALIIQSLAAN------LGVST-GKHLSELCKAEYPIIVKYCLWLLA 147 (179)
Q Consensus 99 LWvvlls~i~~~~lQ~~aaR------lgivT-G~~L~e~ir~~~gk~~~~~l~i~~ 147 (179)
.|..+++.++.+.+...++| +.--. ++++.|..++++||++++++++.-
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 56666666666666666666 34344 789999999999999887765443
No 29
>PRK15015 carbon starvation protein A; Provisional
Probab=85.35 E-value=6.2 Score=39.13 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=49.8
Q ss_pred HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhh--HHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345 62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYE--LLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI 137 (179)
Q Consensus 62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~--LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk 137 (179)
++|.+.-|.|-|++ -...++|||- +||++ +.+++.-.+|++.+=..-+ -||++.|.+|++.|+
T Consensus 91 HHFasIAGAGPivG------------PvlAa~~GwlP~~LWIl-~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~ 157 (701)
T PRK15015 91 HHFAAIAGAGPLVG------------PVLAAQMGYLPGMIWLL-AGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGP 157 (701)
T ss_pred HHHHHHhccCccHH------------HHHHHHHcchHHHHHHH-HcceeechhhhhhheeeeecCCCccHHHHHHHHhhH
Confidence 56666667777763 2345689995 77764 6777777888877655443 589999999999998
Q ss_pred hHHHHH
Q 030345 138 IVKYCL 143 (179)
Q Consensus 138 ~~~~~l 143 (179)
+.+.+.
T Consensus 158 ~~~~lf 163 (701)
T PRK15015 158 TAGVIA 163 (701)
T ss_pred HHHHHH
Confidence 766553
No 30
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=84.05 E-value=25 Score=31.78 Aligned_cols=74 Identities=8% Similarity=0.091 Sum_probs=42.7
Q ss_pred hhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 66 SFVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 66 ~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
..++=|-+++.+ ++.||......-.++-. ..+..-++..+.+..+-|++.++-. .-+..+-.++.+|+.+++..
T Consensus 20 ~~i~ig~~IGsGif~~~g~~~~~~G~~~~i--~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 20 TMLSIAGVIGAGLFVGSGSAIASAGPAALL--AYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHHHhhhhhchHHHhhHHHHHhcCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhCcHHHHHH
Confidence 345666666665 67777666543211111 2222333344556667777776653 23678888999999877654
No 31
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=82.63 E-value=12 Score=33.66 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHH
Q 030345 96 YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIA 153 (179)
Q Consensus 96 Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~ 153 (179)
++-+.++++++++..++.-+.++.|..||.+-.-..|..||++-+++..+...+..++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig 86 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG 86 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999987766544443333333
No 32
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=82.08 E-value=19 Score=33.66 Aligned_cols=100 Identities=9% Similarity=-0.049 Sum_probs=60.9
Q ss_pred hhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCC---------HHHHHHhHcCchHHHHHHHHH
Q 030345 77 AYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKH---------LSELCKAEYPIIVKYCLWLLA 147 (179)
Q Consensus 77 a~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~---------L~e~ir~~~gk~~~~~l~i~~ 147 (179)
+-+|+||++--..|=+-=|-.-+..++++.++.+...+.-.-|+...++. .+--+++-+++++.-.++.+.
T Consensus 31 ~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 31 GTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAIF 110 (416)
T ss_pred hccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHHH
Confidence 35777776554444444456666777788888888888888888876643 777888888765543333333
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHhCCCCCC
Q 030345 148 EIAVIAA--DIPEGIFSIIFLNILLRYMHAP 176 (179)
Q Consensus 148 ~l~~i~t--~laeiiG~aiaL~lLfgip~~~ 176 (179)
.+..+.. .+.+.--++.+++--|++|+.+
T Consensus 111 ~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~ 141 (416)
T PF01235_consen 111 LIIAFGIGFNMVQANSIADALSSAFGIPPWI 141 (416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccccHHH
Confidence 2222222 2333334466677678888643
No 33
>PRK10249 phenylalanine transporter; Provisional
Probab=80.81 E-value=30 Score=31.55 Aligned_cols=98 Identities=9% Similarity=0.085 Sum_probs=52.5
Q ss_pred hhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHH
Q 030345 66 SFVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 66 ~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~ 144 (179)
..++=|-+++.+ ++.||......-.++-.+| +-.-++..+.+..+.|++.++=. +| +.....++.+|+.+++...
T Consensus 29 ~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~--li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~g 104 (458)
T PRK10249 29 QLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY--GVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSG 104 (458)
T ss_pred hhhhhhcccchhHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHH
Confidence 346666677777 6788886654322222221 11223344555566677776654 45 7788889999997766543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030345 145 LLAEIAVIAADIPEGIFSIIFLN 167 (179)
Q Consensus 145 i~~~l~~i~t~laeiiG~aiaL~ 167 (179)
....+.......+|..+.+.-++
T Consensus 105 w~~~~~~~~~~~~~~~a~~~~~~ 127 (458)
T PRK10249 105 WNYWVMFVLVGMAELTAAGIYMQ 127 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333444444443333
No 34
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=80.24 E-value=14 Score=34.76 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=54.4
Q ss_pred HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhc---CCCHHHHHHhHcCchHHHHHHHHHH
Q 030345 72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVST---GKHLSELCKAEYPIIVKYCLWLLAE 148 (179)
Q Consensus 72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivT---G~~L~e~ir~~~gk~~~~~l~i~~~ 148 (179)
+.++-..+|.|=+.-=+++|...=+-++-+.+++.++++.--.+-.|.-... |.++.+..++++||++..+.++...
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 3444457888888888888776555555566666666666655556665554 6799999999999998887765443
Q ss_pred H
Q 030345 149 I 149 (179)
Q Consensus 149 l 149 (179)
+
T Consensus 106 f 106 (443)
T PRK13629 106 F 106 (443)
T ss_pred H
Confidence 3
No 35
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=79.83 E-value=28 Score=32.08 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=56.7
Q ss_pred hhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCchHHHHH
Q 030345 66 SFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 66 ~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk~~~~~l 143 (179)
+.+|-.++++-..+|.|-+.-=.++|...=+-.+-+++++.+++...-..-.|+-.- .|.++.+..+|.+||+..++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 467888888888999999988777766322222333333333233222223443222 467899999999999988887
Q ss_pred HHHHHHHHHHHHHH
Q 030345 144 WLLAEIAVIAADIP 157 (179)
Q Consensus 144 ~i~~~l~~i~t~la 157 (179)
++...+.......+
T Consensus 84 ~~~y~fl~y~ll~A 97 (403)
T PRK15132 84 GFSMMFLMYALTAA 97 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 76655544444333
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=78.27 E-value=54 Score=29.92 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=40.6
Q ss_pred hhchhHhhhHh-hcCCCchhhhhh-HHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 67 FVGPGFLVSLA-YLDPGNLETDLQ-AGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 67 ~lGPG~lvaaa-~idPG~i~T~~~-aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
.+|=|-+++.+ ++.||......- .|.-++|-+ .-++..+.+..+-|++.++=. +| +...-.++.+|+.+++.
T Consensus 23 ~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i--~~~~~~~~~~~~aELas~~P~-aG-G~y~y~~~~~g~~~gf~ 96 (471)
T PRK11387 23 MLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLI--GALVVYLVMQCLGELSVAMPE-TG-AFHVYAARYLGPATGYT 96 (471)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-CC-CHHHHHHHhcChHHHHH
Confidence 35666666555 567776655432 123233222 222333444556778887754 33 47778888899987654
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=76.70 E-value=43 Score=30.62 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=38.6
Q ss_pred hchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 68 VGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 68 lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
++=|-+++.+ ++.||......-.++-++|-+..+ +..+.+..+-|++..... .| +..+..++.+|+.++++.
T Consensus 30 i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i--~~~~~~~s~aEl~s~~~~-~~-~~~~ya~~~~g~~~gf~~ 102 (469)
T PRK11049 30 IAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGF--MLFFVMRAMGELLLSNLE-YK-SFSDFASDLLGPWAGYFT 102 (469)
T ss_pred HHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC-CC-cHHHHHHHHhCcHHHHHH
Confidence 5666677666 577777765432222222222222 122233445566654332 22 567788899999776654
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=73.24 E-value=63 Score=29.33 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=42.1
Q ss_pred hhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHH----HHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHH
Q 030345 67 FVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIG----LIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKY 141 (179)
Q Consensus 67 ~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls----~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~ 141 (179)
.++=|.+++.+ +..||..... +|. ..+|..+++ .+.+..+.|++.++-. --+...-.++.+||.+++
T Consensus 18 ~i~vg~~IG~Gif~~~g~~~~~--aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~--~Gg~y~y~~~~~G~~~gf 89 (457)
T PRK10580 18 FMALGSAIGTGLFYGSADAIKM--AGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPA--ASSFSRYAQENLGPLAGY 89 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcHHHH
Confidence 46667777665 6777765553 343 233444443 3445567777777553 336677788889998766
Q ss_pred HH
Q 030345 142 CL 143 (179)
Q Consensus 142 ~l 143 (179)
..
T Consensus 90 ~~ 91 (457)
T PRK10580 90 IT 91 (457)
T ss_pred HH
Confidence 54
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=71.73 E-value=47 Score=31.68 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=53.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 91 GANHRYELLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNI 168 (179)
Q Consensus 91 GA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~l 168 (179)
=+.-|-+.+-+-+++-++.+++.++-+-+-+. +-.+..+..+|.+|++.+++..=.--+.-+.+.++|..+++.=++.
T Consensus 41 I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~ 120 (462)
T COG1113 41 IAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQF 120 (462)
T ss_pred hhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888888888888888888777 3558999999999998765532222222233445566655555555
Q ss_pred Hh
Q 030345 169 LL 170 (179)
Q Consensus 169 Lf 170 (179)
-|
T Consensus 121 Wf 122 (462)
T COG1113 121 WF 122 (462)
T ss_pred hc
Confidence 45
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=70.47 E-value=34 Score=29.99 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHH
Q 030345 105 GLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWL 145 (179)
Q Consensus 105 s~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i 145 (179)
+......+-|++.|.- .+.+..+..++.+||+.+++.++
T Consensus 41 ~~~~~l~~~el~~~~p--~~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 41 MLHSGLLLLEVYLTYP--GGASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred HHHHHHHHHHHHHhCC--CCCCHHHHHHHHhCHHHHHHHHH
Confidence 3344445555555542 25689999999999998887653
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=70.14 E-value=70 Score=27.54 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhHcCchHHHHHH
Q 030345 100 WVVLIGLIFALIIQSLAANLGVS-TGKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 100 Wvvlls~i~~~~lQ~~aaRlgiv-TG~~L~e~ir~~~gk~~~~~l~ 144 (179)
..++++.++...+-.+..|+.-. .++++.|..++.+||+++..+.
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~ 81 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIIN 81 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHH
Confidence 34566666777777777777765 8999999999999999877643
No 42
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=68.97 E-value=70 Score=30.79 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCchhhhhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 80 DPGNLETDLQAGANHRYE-----LLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 80 dPG~i~T~~~aGA~fGY~-----LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
|.=|+-|+..++.-+-.. -+-.+++++++..++..+.+|-|...|-+-...+|..||-+-+.+
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~ 120 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANF 120 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhH
Confidence 344444555444444333 344677788888889999999999999999999999998655443
No 43
>PRK10483 tryptophan permease; Provisional
Probab=68.34 E-value=30 Score=32.22 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=54.9
Q ss_pred HhhhchhHhhhHhhcCCCchhh-hhhHHhhhhhhHHHHHHHHHHHHH---HHHHHHhHhhhhcCCCHHHHHHhHcCchHH
Q 030345 65 LSFVGPGFLVSLAYLDPGNLET-DLQAGANHRYELLWVVLIGLIFAL---IIQSLAANLGVSTGKHLSELCKAEYPIIVK 140 (179)
Q Consensus 65 l~~lGPG~lvaaa~idPG~i~T-~~~aGA~fGY~LLWvvlls~i~~~---~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~ 140 (179)
.+.+|=.++++-..+|.|=++- ...+|+.|.++++-.++.-.++.+ .+-|..-|.. .|.++....++.+||++.
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 4568888899888999998865 344566665555433333333322 3666666653 578899999999999888
Q ss_pred HHHHHHH
Q 030345 141 YCLWLLA 147 (179)
Q Consensus 141 ~~l~i~~ 147 (179)
++.|+..
T Consensus 89 ~i~~~s~ 95 (414)
T PRK10483 89 VVNGISI 95 (414)
T ss_pred HHHHHHH
Confidence 8766544
No 44
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=67.39 E-value=9.8 Score=35.82 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHH
Q 030345 94 HRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGI 160 (179)
Q Consensus 94 fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeii 160 (179)
|++ -++++++++++..++....+-.|..||.+-...-|..+|.+-+++.-++..+..++--.-+.+
T Consensus 51 ~~~-si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~ 116 (442)
T COG1457 51 FGQ-SLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVI 116 (442)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 444 458999999999999999999999999999999999999988876555555555554444443
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=66.42 E-value=26 Score=32.02 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=45.2
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~ 144 (179)
|+..-+-++|.||+..-...|.+-|....+.++--.+-.+ .--+.+=+.+..-.+-.+.+++++||+.+.++.
T Consensus 1 g~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV-~lpllgl~av~~~gG~~~~l~~~~g~~f~~lf~ 73 (378)
T TIGR00796 1 GFMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGV-GLPLLGLIALALVGGGYDSLSARIGKVFGILFT 73 (378)
T ss_pred ChHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHH-HHHHHHHheeeecCCCHHHHHHHhChHHHHHHH
Confidence 3445567899999999999888888775444432222222 222222223332225667778889999888764
No 46
>TIGR00909 2A0306 amino acid transporter.
Probab=65.26 E-value=68 Score=28.48 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 106 LIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 106 ~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
.+.+..+.|++.++-- +| +..+-.++.+||+.++.
T Consensus 50 ~~~a~~~~el~~~~p~-~G-g~y~~~~~~~G~~~g~~ 84 (429)
T TIGR00909 50 LFIALVYAELAAMLPV-AG-SPYTYAYEAMGELTAFI 84 (429)
T ss_pred HHHHHHHHHHHhhcCC-CC-cceeeHHHHhCcHHHHH
Confidence 3445667777777653 23 56677788899987664
No 47
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=63.97 E-value=14 Score=30.75 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=28.1
Q ss_pred cCCCchhhhhhHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHH
Q 030345 79 LDPGNLETDLQAGANHRY-----ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELC 131 (179)
Q Consensus 79 idPG~i~T~~~aGA~fGY-----~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~i 131 (179)
.|||.+++....+++++. ..+-++++.+++.+++-..+.++.-.-|++-.+.+
T Consensus 122 aGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi 179 (203)
T PF01914_consen 122 AGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVI 179 (203)
T ss_pred cChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 566677777777777773 22233333344444444445555544455444444
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=62.51 E-value=60 Score=30.27 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=52.7
Q ss_pred hhhchhHhhhHhhcCCCchhh-hhhHHhhhhhhHHHHHHHHHHHHH---HHHHHHhHhhhhcCCCHHHHHHhHcCchHHH
Q 030345 66 SFVGPGFLVSLAYLDPGNLET-DLQAGANHRYELLWVVLIGLIFAL---IIQSLAANLGVSTGKHLSELCKAEYPIIVKY 141 (179)
Q Consensus 66 ~~lGPG~lvaaa~idPG~i~T-~~~aGA~fGY~LLWvvlls~i~~~---~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~ 141 (179)
+.+|=.++++-..+|.|=++- .+.+|+.|-++.+-.++.-.++.+ .+-|...+.. .|.++....|+.+||++..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 678877777777899997764 334555554444322222222222 3666666664 6888999999999999888
Q ss_pred HHHHHH
Q 030345 142 CLWLLA 147 (179)
Q Consensus 142 ~l~i~~ 147 (179)
+.|+..
T Consensus 88 i~~~~~ 93 (415)
T PRK09664 88 ISGITV 93 (415)
T ss_pred HHHHHH
Confidence 877655
No 49
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=61.07 E-value=18 Score=24.03 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCch
Q 030345 98 LLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPII 138 (179)
Q Consensus 98 LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~ 138 (179)
.+..+.+++...++.+. |.+.-.|++|.|+++++|.++
T Consensus 9 P~~av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred hHHHHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 45666677666666666 999999999999999998654
No 50
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=59.04 E-value=1.4e+02 Score=27.20 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 102 VLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 102 vlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
.+...+.+..+.|++.|+--..| +..+-.++.+|+..++.
T Consensus 45 ~~~~~~~al~~aeL~s~~P~~gG-G~y~y~~~~fG~~~gf~ 84 (468)
T TIGR03810 45 GVGMLALAFSFQNLANKKPELDG-GVYSYAKAGFGPFMGFI 84 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC-ChhhhHHhHcCcHHHHH
Confidence 33445556677777777653332 67888999999977654
No 51
>PRK10746 putative transport protein YifK; Provisional
Probab=58.79 E-value=1.5e+02 Score=27.21 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=39.1
Q ss_pred hhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 67 FVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 67 ~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
.++=|-+++.+ +++||..... +|..--+..+-.-++..+.+..+-|++.++=. +| +...-.++.+|+.+++..
T Consensus 19 ~i~ig~~IGtGlf~~~g~~l~~--aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~ 92 (461)
T PRK10746 19 LIALGGTIGVGLFMGAASTLKW--AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLT 92 (461)
T ss_pred HHHHHhhhhhhHHHHhHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 35555555555 5666665444 33211111111223333445556777777642 44 677888888898776543
No 52
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=58.14 E-value=1.1e+02 Score=27.92 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=49.9
Q ss_pred HhhhHhhcCCCchhhhhhHHh-hhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCC---CHHHHHHhHcCchHHHHHHHHH
Q 030345 72 FLVSLAYLDPGNLETDLQAGA-NHRYELLWVVLIGLIFALIIQSLAANLGVSTGK---HLSELCKAEYPIIVKYCLWLLA 147 (179)
Q Consensus 72 ~lvaaa~idPG~i~T~~~aGA-~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~---~L~e~ir~~~gk~~~~~l~i~~ 147 (179)
++++-..+|.|=+.-=.+.+. .|.+.+ -.++++.++++.-+++-.|.-..+++ +..+..++++||++++++.+..
T Consensus 16 l~l~gT~IGAGvL~lP~a~~~~G~~~~l-~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~ 94 (415)
T COG0814 16 LILAGTAIGAGVLFLPVAFGGGGFWPGL-LLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSY 94 (415)
T ss_pred HHHHccccccchhhhhHHhcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHH
Confidence 344444677776665544432 222222 23334445555666666665555444 7999999999999999877666
Q ss_pred HHHHHHHHH
Q 030345 148 EIAVIAADI 156 (179)
Q Consensus 148 ~l~~i~t~l 156 (179)
.+.......
T Consensus 95 ~~~~~~~~~ 103 (415)
T COG0814 95 FFALYGLLV 103 (415)
T ss_pred HHHHHHHHH
Confidence 554444433
No 53
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=57.26 E-value=1.5e+02 Score=26.67 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 104 IGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 104 ls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
+..+.+..+-|++.|+-. +| +...-.++.+|+.+++..
T Consensus 52 ~~~~~a~~~aEl~s~~P~-~G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPT-AG-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 334556678999998874 33 667788899999876654
No 54
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=57.08 E-value=1.1e+02 Score=27.85 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 108 FALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 108 ~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
.++.+-|++.++-..+ =+..+-.++.+||++++.
T Consensus 57 ~al~~aEl~s~~P~~s-GG~y~y~~~~~G~~~gf~ 90 (473)
T TIGR00905 57 LAFVFAILATKKPELD-GGIYAYAREGFGPYIGFM 90 (473)
T ss_pred HHHHHHHHHhhCCCCC-CChhhhHHhHcccccHHH
Confidence 4445556665554311 236667788899977665
No 55
>PRK15049 L-asparagine permease; Provisional
Probab=56.53 E-value=1.7e+02 Score=27.21 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=44.7
Q ss_pred hhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 67 FVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 67 ~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
.++=|-+++.+ ++.||......-.++-.+ .+..-++..+.+..+-||+.++=. +| +...-.++.+|+++++..
T Consensus 37 ~i~~G~~IGsGiF~~~g~~~~~aGp~~il~--~li~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G~~~gf~~ 110 (499)
T PRK15049 37 MIAIGGAIGTGLFLGAGARLQMAGPALALV--YLICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLGEKAAYVA 110 (499)
T ss_pred HHhhhccccchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhCcHhHHHH
Confidence 46667777777 577887665443333332 233334444555566777777653 44 778888888999876553
No 56
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=55.69 E-value=1.3e+02 Score=26.18 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=39.4
Q ss_pred hchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhHcCchHHHHH
Q 030345 68 VGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVS-TGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 68 lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv-TG~~L~e~ir~~~gk~~~~~l 143 (179)
+.=|.+++.+ ..-|+.++...... +| ..++++.+++...-....+++.. .++++.|..++.+||+.++++
T Consensus 11 l~~~~~iG~gil~~P~~~~~~a~~~---~w---i~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~ 82 (359)
T TIGR00912 11 LISSTMIGSGLLTLPALVSQSAGQD---GW---ISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLL 82 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHhccCCC---ee---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHH
Confidence 4445555555 35566555432222 11 33344444444444444444433 478999999999999887764
No 57
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=55.39 E-value=1.6e+02 Score=26.66 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=42.6
Q ss_pred hhchhHhhhHh-hcCCCchhhhhhHHhh-hhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 67 FVGPGFLVSLA-YLDPGNLETDLQAGAN-HRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 67 ~lGPG~lvaaa-~idPG~i~T~~~aGA~-fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
.++=|.+++.+ +..+|..... +|.. .=+..+..-++..+.+..+-|++.++=. +|=+...-.++.+|+.+++..
T Consensus 11 ~l~vg~~IGsGif~~~~~~~~~--~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g~~~gf~~ 86 (478)
T TIGR00913 11 MIALGGTIGTGLLVGSGTALAT--GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVDPAFGFAV 86 (478)
T ss_pred HHHHhccccchhhhcchhHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCcHHHHHH
Confidence 35666666655 5677776654 3421 1112222233445555667777777653 343567778888998877654
No 58
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=53.02 E-value=1.2e+02 Score=24.30 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=41.7
Q ss_pred chhhhhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHH
Q 030345 83 NLETDLQAGANHRY--ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGI 160 (179)
Q Consensus 83 ~i~T~~~aGA~fGY--~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeii 160 (179)
++......|..+|. .++|+++-+.+-.+++. |-|..+=+.+.+..++.-.+.-...=-+...++.+.--+.-++
T Consensus 15 Ei~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r----~~G~~~l~~~~~~~~~G~~p~~~l~~~~~~~~gg~LLi~PGf~ 90 (148)
T PRK11463 15 EIAVFIAVASVIGVGWTLLLVILTSVLGVLLAR----SQGFKTLLRAQRKLARGELPAAELLDGLLLAVAGVLLLLPGFV 90 (148)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCcHHHHHHhHHHHHHHHHHHccHHH
Confidence 45556677777774 34444444444333332 2333333334444444222221121123334455555566667
Q ss_pred HHHHHHHHHhCCC
Q 030345 161 FSIIFLNILLRYM 173 (179)
Q Consensus 161 G~aiaL~lLfgip 173 (179)
...+|+-++++-.
T Consensus 91 tD~~Gllll~P~~ 103 (148)
T PRK11463 91 TDILGLLLLLPPT 103 (148)
T ss_pred HHHHHHHHHcchh
Confidence 7777777776643
No 59
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=52.94 E-value=72 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.7
Q ss_pred hhhhhhHHHHHHHHHH-----HHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 92 ANHRYELLWVVLIGLI-----FALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 92 A~fGY~LLWvvlls~i-----~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
|.+|+++....+++.+ .+..+.|++.+..-.+| +...-.++-+|+++++.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 4677877655555443 35566666665431233 67777888899987664
No 60
>PRK10238 aromatic amino acid transporter; Provisional
Probab=52.81 E-value=1.8e+02 Score=26.46 Aligned_cols=101 Identities=9% Similarity=0.104 Sum_probs=55.9
Q ss_pred hhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHH
Q 030345 66 SFVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 66 ~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~ 144 (179)
..++=|-+++.+ ++.||......-.++-++| +.+-++..+.+..+-|++.++=. +| +...-.++.+||..++...
T Consensus 20 ~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g~~~gf~~G 95 (456)
T PRK10238 20 QLIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWGSFAGFASG 95 (456)
T ss_pred HHHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcCcHHHHHHH
Confidence 346667777776 5888887765422333322 22222334444556677777764 44 6777788889998777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030345 145 LLAEIAVIAADIPEGIFSIIFLNILL 170 (179)
Q Consensus 145 i~~~l~~i~t~laeiiG~aiaL~lLf 170 (179)
....+.......+|..+.+.-++..+
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (456)
T PRK10238 96 WNYWVLYVLVAMAELTAVGKYIQFWY 121 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333444444444445444
No 61
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=49.42 E-value=2e+02 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345 107 IFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143 (179)
Q Consensus 107 i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l 143 (179)
+.+..+-|++.++=. +| +...-.++.+|+.+++..
T Consensus 40 ~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~~ 74 (446)
T PRK10197 40 MIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYTI 74 (446)
T ss_pred HHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHHH
Confidence 344555566665542 33 788889999999776643
No 62
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=48.07 E-value=29 Score=28.96 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHH
Q 030345 101 VVLIGLIFALIIQSLAANLGVSTGKHLSELCK 132 (179)
Q Consensus 101 vvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir 132 (179)
++++..++.++.-..+.++.-.-|++-.+.+.
T Consensus 151 ai~~~~~~~~~~l~~s~~l~~~LG~~g~~il~ 182 (201)
T TIGR00427 151 AIALVALITWLLFRYSAFIIRRLGRTGINVIT 182 (201)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444555555555566666555555555543
No 63
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=46.39 E-value=1.3e+02 Score=28.22 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=52.4
Q ss_pred hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhHcCchHHHHHHHHH
Q 030345 71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVS-TGKHLSELCKAEYPIIVKYCLWLLA 147 (179)
Q Consensus 71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv-TG~~L~e~ir~~~gk~~~~~l~i~~ 147 (179)
|+..-+-+.|.||+.-=...|.+-|-+..|..+=-++-.+.+=.++ -+.+. +|.+..+ +.+|.||+.+.++.+..
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~-l~~~v~~~f~~if~~~i 84 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIED-LASRVGPKFALIFTILI 84 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHH-HhcccCcHHHHHHHHHH
Confidence 5666678999999999999999999998777665555555544444 45554 4445554 45668888887765444
No 64
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=45.70 E-value=2.3e+02 Score=25.53 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=41.2
Q ss_pred hchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 68 VGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 68 lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
++=|-+++.+ +.-||.++.. +|.. =+..+...+.+.+.+..+-|++.++=. +| +...-.++.+||.+++.
T Consensus 18 l~vg~~iGsGif~~~~~~a~~--g~~~-~~~~~i~~~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 18 MVAGNIMGSGVFLLPANLAST--GGIA-IYGWLVTIIGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHhhHhhhHHHhhHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4555666666 4556665432 2321 122222234556667778888888753 34 67777889999987653
No 65
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=44.75 E-value=38 Score=28.55 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=28.1
Q ss_pred cCCCchhhhhhHHhhhh---hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHH
Q 030345 79 LDPGNLETDLQAGANHR---YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEL 130 (179)
Q Consensus 79 idPG~i~T~~~aGA~fG---Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ 130 (179)
.|||.++|.....++++ ...+.++++...+.+..-..+.|+--.=|++=...
T Consensus 121 aGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~ 175 (203)
T COG2095 121 AGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNA 175 (203)
T ss_pred cCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677777777 33444444555555555555555544444443333
No 66
>TIGR00930 2a30 K-Cl cotransporter.
Probab=44.05 E-value=2.2e+02 Score=29.32 Aligned_cols=49 Identities=14% Similarity=-0.169 Sum_probs=27.5
Q ss_pred hcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030345 122 STGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170 (179)
Q Consensus 122 vTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLf 170 (179)
+.+=+....+++.+|+.++..+.+...++..+......+|.+-.+.-+|
T Consensus 140 p~aGG~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf 188 (953)
T TIGR00930 140 VKGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLL 188 (953)
T ss_pred CCccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677778888998776555444444444444444445444444444
No 67
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=43.95 E-value=1.6e+02 Score=27.87 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=53.9
Q ss_pred hhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHH
Q 030345 70 PGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLA 147 (179)
Q Consensus 70 PG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~ 147 (179)
=|+..-+-+.|.||+.-=-..|.+-|-+..+.++--++-++.+=.+..=-...+|.+..+ +.+|.||+.+.++.+.+
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~-l~~rv~~~f~~~f~~~i 89 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDS-LSTPIGKVAGVLLATVC 89 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH-HhhhcchHHHHHHHHHH
Confidence 377777889999999999999999999987776665555555555443333345545554 44668888877665444
No 68
>PRK10739 putative antibiotic transporter; Provisional
Probab=42.44 E-value=1.6e+02 Score=24.51 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCCCHHHHH
Q 030345 102 VLIGLIFALIIQSLAANLGVSTGKHLSELC 131 (179)
Q Consensus 102 vlls~i~~~~lQ~~aaRlgivTG~~L~e~i 131 (179)
+++.+++.+++-..+.++.-.=|++-.+.+
T Consensus 142 i~~~~~~~~l~l~~s~~i~~~LG~~g~~vi 171 (197)
T PRK10739 142 LLIAWGGTFVILLQSSLFLRLLGEKGVNAL 171 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444445555555555544444444443
No 69
>PTZ00206 amino acid transporter; Provisional
Probab=41.72 E-value=2.9e+02 Score=25.57 Aligned_cols=35 Identities=6% Similarity=-0.065 Sum_probs=23.2
Q ss_pred CCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHH
Q 030345 125 KHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEG 159 (179)
Q Consensus 125 ~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laei 159 (179)
++..|..+.-+||+..++.-+...+-.+++.++-+
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~Yl 155 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYV 155 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888889998877765555444555544443
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=39.59 E-value=3.2e+02 Score=25.64 Aligned_cols=67 Identities=10% Similarity=-0.037 Sum_probs=33.9
Q ss_pred HhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcC----CC-----HHHHHHhHcC-chHHHH
Q 030345 76 LAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTG----KH-----LSELCKAEYP-IIVKYC 142 (179)
Q Consensus 76 aa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG----~~-----L~e~ir~~~g-k~~~~~ 142 (179)
++-+|.||++.-..+=+.=|..-+..++++.++.+..-+.-.-++..-+ ++ .+--+++.++ ||++.+
T Consensus 58 a~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~l 134 (425)
T TIGR00835 58 AARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVL 134 (425)
T ss_pred HHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHH
Confidence 3456666665554442222455555555555555555555555555444 22 2344555554 665554
No 71
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=36.58 E-value=27 Score=30.58 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=43.0
Q ss_pred CCchhhhhhHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHhhhhcCCCHHH
Q 030345 81 PGNLETDLQAGANHRYELLWVVLIGLIFAL-IIQSLAANLGVSTGKHLSE 129 (179)
Q Consensus 81 PG~i~T~~~aGA~fGY~LLWvvlls~i~~~-~lQ~~aaRlgivTG~~L~e 129 (179)
|..+.........+.+-+.+.+.++..+-+ ++..+..|+|++|-+++.+
T Consensus 146 ~~~~~~~~~i~~y~~f~l~l~~~FGv~FElPvv~~~L~~~Giv~~~~L~~ 195 (255)
T COG0805 146 PDGVSPALSISKYLSFVLTLLLAFGVAFELPVVIVLLTRLGIVTPETLKK 195 (255)
T ss_pred ccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 778888899999999999999999998888 7788999999999877763
No 72
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=36.43 E-value=2.1e+02 Score=27.14 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=53.4
Q ss_pred hhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHH
Q 030345 70 PGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 70 PG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~ 144 (179)
-|++.-+-+.|.||+.-=-..|-..|....|..+=-.+-++-+=.+..=-....|++..+.- ++-||+.+.++-
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f~ 83 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLFA 83 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHHH
Confidence 47777788999999999999999999998666654444444444444444455777777765 557888777543
No 73
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.43 E-value=22 Score=30.79 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=31.4
Q ss_pred CchhHHHHHhhhch-hHhhhHhhcCCCchhhhhhHHhh
Q 030345 57 KKPGWRRFLSFVGP-GFLVSLAYLDPGNLETDLQAGAN 93 (179)
Q Consensus 57 ~~~~~~~~l~~lGP-G~lvaaa~idPG~i~T~~~aGA~ 93 (179)
..++|.|+|-|+=| |++|.-+.+-..|++..-.+|+.
T Consensus 238 eRSF~AKYWMYiiPlglVVl~AV~qasnmAeePa~G~a 275 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVVLFAVIQASNMAEEPAAGAA 275 (279)
T ss_pred chhHHHHHHHhhccchhhhhhhhhhccccccCcccccc
Confidence 46778899988877 99999999999999988887764
No 74
>PHA01080 hypothetical protein
Probab=32.51 E-value=51 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.5
Q ss_pred hhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 030345 86 TDLQAGANHRYELLWVVLIGLIFALII 112 (179)
Q Consensus 86 T~~~aGA~fGY~LLWvvlls~i~~~~l 112 (179)
|.++.|..||....||+.++.+..+.+
T Consensus 45 tpt~~~qaFglgF~~V~~lgyls~YaV 71 (80)
T PHA01080 45 TPTDAGTAFSFGFMAVFALGYLSTYAV 71 (80)
T ss_pred CHHHHHHHHhhhHHHHHHhhhhHHHHH
Confidence 445778899999999999999887754
No 75
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=32.38 E-value=3.8e+02 Score=24.15 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.3
Q ss_pred hchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 68 VGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 68 lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
++=|-+++.+ ++=||+++. +|..-=+..+-..+.+.+.+..+.|++.|+=. +| +...-.++ +|+.+++.
T Consensus 15 l~vg~~IGsGif~lp~~~a~---~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 15 VVAGNMMGSGIALLPANLAS---IGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHhhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 5666666666 455666532 34321112222233455666778888888764 45 66777777 88876654
No 76
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=30.28 E-value=2.7e+02 Score=21.77 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=50.0
Q ss_pred hhhHHhh--hhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCH-HHHHHhHcCchHHHHHHHHHHHHHHHH
Q 030345 87 DLQAGAN--HRYELLWVVLIGLIFALIIQSLAANLGVSTGKHL-SELCKAEYPIIVKYCLWLLAEIAVIAA 154 (179)
Q Consensus 87 ~~~aGA~--fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L-~e~ir~~~gk~~~~~l~i~~~l~~i~t 154 (179)
..+.-.+ |+..+.|.-=++..+.+.+-.+++=++...|.++ .+.+.+++|++....+-++..+..+.+
T Consensus 21 ~~~Vv~Ry~f~~~~~w~eEla~~l~v~~~flGa~~~~~~~~Hi~Vd~l~~~lp~~~~~~l~~l~~l~~~~f 91 (157)
T PRK09877 21 FINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSLILLL 91 (157)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeehHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444455 4666999999999999999999998888888775 467888899887776655554444433
No 77
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=29.69 E-value=1.6e+02 Score=25.96 Aligned_cols=90 Identities=8% Similarity=0.012 Sum_probs=53.1
Q ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 85 ETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLAEIAVIAADIPEGIFSI 163 (179)
Q Consensus 85 ~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~~l~~i~t~laeiiG~a 163 (179)
......-...||....++-++.++...-..-.....+.+-.++.+.....+| ++..+++.+.+..+.+.+.+....+.+
T Consensus 199 l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~ 278 (358)
T PF01566_consen 199 LKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGA 278 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccc
Confidence 4445555556665555544444333222221334456677788888988999 677776666666666666666655555
Q ss_pred HHHHHHhCCCC
Q 030345 164 IFLNILLRYMH 174 (179)
Q Consensus 164 iaL~lLfgip~ 174 (179)
..+.=.+|++.
T Consensus 279 ~~~~~~~~~~~ 289 (358)
T PF01566_consen 279 YVLADFLGWRW 289 (358)
T ss_pred eehHhhhcCCC
Confidence 55555666653
No 78
>PRK11111 hypothetical protein; Provisional
Probab=28.95 E-value=87 Score=26.48 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=26.1
Q ss_pred cCCCchhhhhhHHhhhhh----h-HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHH
Q 030345 79 LDPGNLETDLQAGANHRY----E-LLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCK 132 (179)
Q Consensus 79 idPG~i~T~~~aGA~fGY----~-LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir 132 (179)
.|||.++|.....++++. . +.-++++..++.+++-..+.++.-.-|++-...+.
T Consensus 128 aGPGaIttvI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~s~~i~r~LG~~G~~vi~ 186 (214)
T PRK11111 128 AGPGAISSTIVWGTRYHSWSNLLGFSVAIALFALCCWLLFRMAPWLVRLLGQTGINVIT 186 (214)
T ss_pred cCcHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555555554321 1 12234444455555555566666555555555543
No 79
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=26.83 E-value=2.9e+02 Score=21.12 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=37.4
Q ss_pred hhhhhhHHhhhh--hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 84 LETDLQAGANHR--YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIF 161 (179)
Q Consensus 84 i~T~~~aGA~fG--Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG 161 (179)
+......|..+| +.++|+++-+.+-.+++. |-|..+=+.+.+..++.-.+.-...=-+...++.+.--+.-++.
T Consensus 12 i~~~i~v~~~iG~~~tll~vi~t~~lG~~llr----~~g~~~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~LLi~PGflT 87 (119)
T PF04186_consen 12 IAVLILVGSWIGFLWTLLLVILTAVLGIWLLR----RQGRRALRRLQQSLRQGEMPGEELLDGALLAVGGVLLIIPGFLT 87 (119)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455667777777 334444333333333333 33333333333333332111111111233334444445555566
Q ss_pred HHHHHHHHhCC
Q 030345 162 SIIFLNILLRY 172 (179)
Q Consensus 162 ~aiaL~lLfgi 172 (179)
..+|+-++++-
T Consensus 88 D~lGllLllP~ 98 (119)
T PF04186_consen 88 DILGLLLLLPP 98 (119)
T ss_pred HHHHHHHHhhh
Confidence 66666666653
No 80
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=24.82 E-value=5.3e+02 Score=23.44 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=39.0
Q ss_pred hchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHH-----HHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 68 VGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLI-----FALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 68 lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i-----~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
.+-.++..++.++-.++.+. +.+|...+...+++.+ .+..+-|++.++=- + -+...-.|+.+|+.+++.
T Consensus 6 ~~l~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~-GG~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 6 VTLAIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-K-GGVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-C-CCceeeHhhhcChhHHHH
Confidence 34444555555555555433 4566666544444433 33455666665532 2 267777889999877664
No 81
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.68 E-value=3.7e+02 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHH--------HHHHHHHhHhhhhcCCCHH
Q 030345 95 RYELLWVVLIGLIFA--------LIIQSLAANLGVSTGKHLS 128 (179)
Q Consensus 95 GY~LLWvvlls~i~~--------~~lQ~~aaRlgivTG~~L~ 128 (179)
+..++|...++.++- ++-...++|+|...|-+|.
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLs 201 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLS 201 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchh
Confidence 445777777766543 3445678999999999886
No 82
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=23.38 E-value=56 Score=29.97 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=26.4
Q ss_pred CchhHHHHHhhhchhHhhhHhhcCCCchh
Q 030345 57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLE 85 (179)
Q Consensus 57 ~~~~~~~~l~~lGPG~lvaaa~idPG~i~ 85 (179)
....|+.+++.++|-.++++.|+|=+||.
T Consensus 76 ~~~sw~~~Lr~~aPtalata~DIGLSN~s 104 (349)
T KOG1443|consen 76 VVLSWRDYLRRLAPTALATALDIGLSNWS 104 (349)
T ss_pred cCCcHHHHHHHhhhhhhhhhcccccccce
Confidence 35679999999999999999999999985
No 83
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=22.07 E-value=3e+02 Score=19.64 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=18.4
Q ss_pred CchhHHHHHhhhchhHhhhHhh
Q 030345 57 KKPGWRRFLSFVGPGFLVSLAY 78 (179)
Q Consensus 57 ~~~~~~~~l~~lGPG~lvaaa~ 78 (179)
.+++.++++++++|+.+.+...
T Consensus 28 ~~~~~~~~l~~vp~avl~aLv~ 49 (99)
T PF05437_consen 28 LPPRVRRFLRYVPPAVLAALVV 49 (99)
T ss_pred CCHHHHHHHHHhHHHHHHHHHH
Confidence 4677889999999999988763
No 84
>PRK11021 putative transporter; Provisional
Probab=21.69 E-value=5.7e+02 Score=22.64 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHH
Q 030345 105 GLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142 (179)
Q Consensus 105 s~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~ 142 (179)
..+.+..+-|++.++-- +| +...-.++.+|+++++.
T Consensus 45 ~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 45 IFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRV 80 (410)
T ss_pred HHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHH
Confidence 44445566667766653 34 67888888899877654
No 85
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=20.56 E-value=6.7e+02 Score=23.03 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=41.0
Q ss_pred HhhhchhHhhhHhhcCCCchhhhhh-HHhhhhhhHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHhHcCchH
Q 030345 65 LSFVGPGFLVSLAYLDPGNLETDLQ-AGANHRYELLWVVLIGLI----FALIIQSLAANLGVSTGKHLSELCKAEYPIIV 139 (179)
Q Consensus 65 l~~lGPG~lvaaa~idPG~i~T~~~-aGA~fGY~LLWvvlls~i----~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~ 139 (179)
+..++-..+...+.++-+++..+.. .|. ..++|.++.+.+ .+..+-|++.++=-.+| +...-.++-+|+++
T Consensus 9 l~~~~l~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~ 84 (496)
T PRK15238 9 LSLIGLILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKF 84 (496)
T ss_pred eeHHHHHHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchH
Confidence 3334444445455566666654332 332 244455444433 34456677665432223 78888999999988
Q ss_pred HHH
Q 030345 140 KYC 142 (179)
Q Consensus 140 ~~~ 142 (179)
++.
T Consensus 85 gf~ 87 (496)
T PRK15238 85 AFI 87 (496)
T ss_pred HHH
Confidence 764
Done!