Query 030345
Match_columns 179
No_of_seqs 152 out of 1245
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 95.8 0.11 3.7E-06 46.9 12.3 77 97-173 60-140 (501)
2 2xq2_A Sodium/glucose cotransp 95.8 0.024 8.4E-07 52.1 8.0 99 76-177 62-165 (593)
3 3dh4_A Sodium/glucose cotransp 95.8 0.029 1E-06 50.9 8.3 107 68-177 22-136 (530)
4 3l1l_A Arginine/agmatine antip 78.9 9.8 0.00034 32.1 8.7 50 95-144 39-90 (445)
5 4djk_A Probable glutamate/gamm 72.5 13 0.00044 32.1 7.9 59 108-169 57-117 (511)
6 3gia_A Uncharacterized protein 59.9 63 0.0022 27.1 9.6 63 68-138 16-83 (444)
7 1zrx_A Stomoxyn; helical pepti 7.9 1.1E+02 0.0038 18.6 0.6 35 131-165 3-37 (42)
8 2a65_A Leutaa, Na(+):neurotran 7.5 1.2E+03 0.04 21.0 10.5 60 78-137 22-87 (519)
9 4f4c_A Multidrug resistance pr 7.4 4.3E+02 0.015 26.5 4.8 17 2-18 5-21 (1321)
10 1z65_A PRPLP, prion-like prote 7.2 1.4E+02 0.0046 17.3 0.7 8 132-139 2-9 (30)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=95.83 E-value=0.11 Score=46.89 Aligned_cols=77 Identities=9% Similarity=0.090 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CC
Q 030345 97 ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL----RY 172 (179)
Q Consensus 97 ~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLf----gi 172 (179)
+.++.+++++++..++-.+.+++|..+|.+.....|..||++.+++.-++..+..++...-+....+.+++.++ |+
T Consensus 60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~ 139 (501)
T 2jln_A 60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34567778888888888899999999999999999999999887765555545555555555555555555543 77
Q ss_pred C
Q 030345 173 M 173 (179)
Q Consensus 173 p 173 (179)
+
T Consensus 140 ~ 140 (501)
T 2jln_A 140 T 140 (501)
T ss_dssp C
T ss_pred c
Confidence 6
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=95.78 E-value=0.024 Score=52.14 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HhhcCCCchhhhhhHHhhhhhhHHHHH---HHHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHH
Q 030345 76 LAYLDPGNLETDLQAGANHRYELLWVV---LIGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAV 151 (179)
Q Consensus 76 aa~idPG~i~T~~~aGA~fGY~LLWvv---lls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~ 151 (179)
+.+++..++......+.++|+...|.. .++. ++..++-...-|.+ -.++.|.+++|||++.+.+.-+...+..
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~---~~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTT---CCSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCcHHHHHHHccCchHHHHHHHHHHHH
Confidence 446777777777778888887754332 2222 22222222223443 3689999999999887655433322222
Q ss_pred HH-HHHHHHHHHHHHHHHHhCCCCCCC
Q 030345 152 IA-ADIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 152 i~-t~laeiiG~aiaL~lLfgip~~~~ 177 (179)
+. ....++.+.+..++.++|+|.+.+
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~ 165 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILGIPLMYS 165 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 22 233455677889999999986543
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.77 E-value=0.029 Score=50.94 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=65.1
Q ss_pred hchhHh---hhHhhcCCCchhhhhhHHhhhhhhHH---HHHHHHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHH
Q 030345 68 VGPGFL---VSLAYLDPGNLETDLQAGANHRYELL---WVVLIGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPIIVK 140 (179)
Q Consensus 68 lGPG~l---vaaa~idPG~i~T~~~aGA~fGY~LL---Wvvlls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~ 140 (179)
+||..+ +.+.++....+......+..+|+.-. |...++. ++..++-...-|.+ -.|+.|.+++||+++.+
T Consensus 22 l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~---~~T~~e~l~~Rfg~~~~ 98 (530)
T 3dh4_A 22 LPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKLK 98 (530)
T ss_dssp CCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTT---CCSHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCcHHH
Confidence 555444 34567888888888888888898754 3322222 22222222333433 37999999999999876
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCC
Q 030345 141 YCLWLLAEIAVIAA-DIPEGIFSIIFLNILLRYMHAPS 177 (179)
Q Consensus 141 ~~l~i~~~l~~i~t-~laeiiG~aiaL~lLfgip~~~~ 177 (179)
.+.-+...+..+.. ..+...+.+..++.+||+|.+.+
T Consensus 99 ~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~ 136 (530)
T 3dh4_A 99 TILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYS 136 (530)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 65433322222222 23445567888999999996544
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=78.90 E-value=9.8 Score=32.10 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhhhc--CCCHHHHHHhHcCchHHHHHH
Q 030345 95 RYELLWVVLIGLIFALIIQSLAANLGVST--GKHLSELCKAEYPIIVKYCLW 144 (179)
Q Consensus 95 GY~LLWvvlls~i~~~~lQ~~aaRlgivT--G~~L~e~ir~~~gk~~~~~l~ 144 (179)
|...+|..+++.++....-..-++++..- .-+..+-.++.+||++++...
T Consensus 39 G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g 90 (445)
T 3l1l_A 39 GGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTN 90 (445)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHH
Confidence 44445555555555544444444444332 236888899999998776643
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=72.54 E-value=13 Score=32.06 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=31.2
Q ss_pred HHHHHHHHHh--HhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 108 FALIIQSLAA--NLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169 (179)
Q Consensus 108 ~~~~lQ~~aa--RlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lL 169 (179)
.+..+-|++. ++= .-+...-+++-+|+++++.......+..+....++..+.+..++.+
T Consensus 57 ~al~~ael~s~~~~P---~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (511)
T 4djk_A 57 VGLCAAEMATVDGWE---EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYI 117 (511)
T ss_dssp HHHHHHHHHTTSCC------CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCC---CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777 766 3467778888899988765433333333333333333333334433
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=59.87 E-value=63 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=33.0
Q ss_pred hchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHhHcCch
Q 030345 68 VGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIF----ALIIQSLAANLGVSTGKHLSELCKAEYPII 138 (179)
Q Consensus 68 lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~----~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~ 138 (179)
++=|.+++.+ +..||.... .+|. ..++..+++.++ +..+-|++.++-. .-+..+-.++.+|++
T Consensus 16 l~~g~~iG~gi~~~~~~~~~--~~G~----~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 16 MAVGVMIGASIFSIFGVGAK--IAGR----NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAIGDN 83 (444)
T ss_dssp HHHHHHHHHHTTTSHHHHHH--HHGG----GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCc----HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHhCcc
Confidence 4555555554 344544332 2332 333444444444 4445555555542 336888888989986
No 7
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=7.93 E-value=1.1e+02 Score=18.62 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345 131 CKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIF 165 (179)
Q Consensus 131 ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aia 165 (179)
+|+||.+....+---+.+.+-.+-|.+-+.|++.+
T Consensus 3 frk~fn~~ikkikhtisetahvakd~aviagsgaa 37 (42)
T 1zrx_A 3 FRKHFNKLVKKVKHTISETAHVAKDTAVIAGSGAA 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTTTGGGTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhheeecCcce
Confidence 46777777666666778888888888877666544
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=7.50 E-value=1.2e+03 Score=20.96 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=39.5
Q ss_pred hcCCCch-----hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhh-hcCCCHHHHHHhHcCc
Q 030345 78 YLDPGNL-----ETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGV-STGKHLSELCKAEYPI 137 (179)
Q Consensus 78 ~idPG~i-----~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgi-vTG~~L~e~ir~~~gk 137 (179)
.+|-||+ .++-.+|..|=---+-.+++..+-.++++..-+|++- .++++.....|+--++
T Consensus 22 AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~ 87 (519)
T 2a65_A 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87 (519)
T ss_dssp HSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred HhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCC
Confidence 5899987 3444455544333344444555666677777788766 6889999999876554
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=7.39 E-value=4.3e+02 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=9.7
Q ss_pred CchhhhhhcccccccCC
Q 030345 2 GSKQQQVMTTDAVALPQ 18 (179)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (179)
|++.|...+.|...++.
T Consensus 5 ~~~~~~l~~~d~~~~~~ 21 (1321)
T 4f4c_A 5 GSLRQSLRTLDSFSLAP 21 (1321)
T ss_dssp HHHHHHHHHHHHTCCCH
T ss_pred chhhcCCcccccccCCc
Confidence 35566666666655543
No 10
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=7.23 E-value=1.4e+02 Score=17.30 Aligned_cols=8 Identities=13% Similarity=-0.134 Sum_probs=5.1
Q ss_pred HhHcCchH
Q 030345 132 KAEYPIIV 139 (179)
Q Consensus 132 r~~~gk~~ 139 (179)
|+|+|.+|
T Consensus 2 rkhLG~~w 9 (30)
T 1z65_A 2 KNRLGTWW 9 (30)
T ss_dssp CSSCSSHH
T ss_pred cchhhhhH
Confidence 56777663
Done!