Query 030345
Match_columns 179
No_of_seqs 152 out of 1245
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 19:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030345.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030345hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 30.6 95 0.0069 22.8 8.2 56 74-141 34-92 (447)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 19.0 1.8E+02 0.013 21.8 9.0 57 78-135 153-209 (254)
3 d1tdja2 d.58.18.2 (A:336-423) 7.6 46 0.0033 21.7 0.2 18 56-73 12-29 (88)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 7.1 2.6E+02 0.019 16.7 9.0 14 94-107 1-14 (86)
5 d1tdja3 d.58.18.2 (A:424-514) 6.7 76 0.0055 20.7 1.1 33 39-78 9-42 (91)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 5.6 2.3E+02 0.017 14.7 3.1 16 100-115 6-21 (30)
7 d1wa3a1 c.1.10.1 (A:2-203) KDP 5.5 28 0.0021 25.9 -2.0 37 62-98 52-89 (202)
8 d1d5ya2 a.4.1.8 (A:57-121) Rob 5.0 79 0.0058 18.7 0.2 25 112-136 17-41 (65)
9 d1bl0a2 a.4.1.8 (A:63-124) Mar 4.9 81 0.0059 18.5 0.2 26 112-137 17-42 (62)
10 d1rwta_ f.43.1.1 (A:) Chloroph 4.6 2.5E+02 0.018 20.2 3.1 28 106-139 177-204 (218)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.64 E-value=95 Score=22.80 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=28.3
Q ss_pred hhHhhcCCCchhhhhhHHhhhhh---hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHH
Q 030345 74 VSLAYLDPGNLETDLQAGANHRY---ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKY 141 (179)
Q Consensus 74 vaaa~idPG~i~T~~~aGA~fGY---~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~ 141 (179)
....|+|-.++....-.=.++|+ +.-|+.-+..+...+.+-.++++ -||||++...
T Consensus 34 ~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l------------~Dr~g~r~~~ 92 (447)
T d1pw4a_ 34 YAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSV------------SDRSNPRVFL 92 (447)
T ss_dssp HHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHH------------HHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHcCchHHH
Confidence 34455665555443333334554 23455555555555555555544 4677776544
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=18.98 E-value=1.8e+02 Score=21.83 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHc
Q 030345 78 YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEY 135 (179)
Q Consensus 78 ~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~ 135 (179)
.+|+.+.....+-+...-+.+++++.+..=...=+..++.++|+.++++ .+..|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~fY~l~l~av~lH~~~Gl~s~~~~wG~~~~~~-~~~~R~~~ 209 (254)
T d2bs2c1 153 TIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGET-PDKTRANL 209 (254)
T ss_dssp GCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTC-HHHHHHHH
T ss_pred CCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCcc-hHhHHHHH
Confidence 3566666666666666666677777777777778899999999998888 44455544
No 3
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.58 E-value=46 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=13.8
Q ss_pred CCchhHHHHHhhhchhHh
Q 030345 56 HKKPGWRRFLSFVGPGFL 73 (179)
Q Consensus 56 ~~~~~~~~~l~~lGPG~l 73 (179)
++|..+++|+..+||==|
T Consensus 12 ErpGaf~~F~~~lg~~nI 29 (88)
T d1tdja2 12 EEKGSFLKFCQLLGGRSV 29 (88)
T ss_dssp BSSSCSHHHHHTTSSSEE
T ss_pred CCccHHHHHHHhcCcCce
Confidence 467788999999998433
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=2.6e+02 Score=16.74 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=7.9
Q ss_pred hhhhHHHHHHHHHH
Q 030345 94 HRYELLWVVLIGLI 107 (179)
Q Consensus 94 fGY~LLWvvlls~i 107 (179)
||.+++..+++-.+
T Consensus 1 y~~~il~~l~il~i 14 (86)
T d2vv5a3 1 YAVNIVAALAIIIV 14 (86)
T ss_dssp GGSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666555443
No 5
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.73 E-value=76 Score=20.67 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCCCCCCCchhHHHHHhhhchhH-hhhHhh
Q 030345 39 PNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGF-LVSLAY 78 (179)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~-lvaaa~ 78 (179)
.|.--++.+| ++|..+++|+..+||-+ |+---|
T Consensus 9 ~E~l~~v~iP-------ErpGal~~Fl~~l~~~~nITeF~Y 42 (91)
T d1tdja3 9 QERLYSFEFP-------ESPGALLRFLNTLGTYWNISLFHY 42 (91)
T ss_dssp CCEEEEEECC-------CCTTHHHHHHHHHCSCCCCCEEEC
T ss_pred ceEEEEEECC-------CCccHHHHHHHHhCCCCcEEEEEE
Confidence 3444556666 57788999999999975 544333
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.59 E-value=2.3e+02 Score=14.66 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 030345 100 WVVLIGLIFALIIQSL 115 (179)
Q Consensus 100 Wvvlls~i~~~~lQ~~ 115 (179)
.|++++|+++.++..+
T Consensus 6 yv~ifac~i~lfffai 21 (30)
T d2axtt1 6 YVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666666555443
No 7
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=5.55 E-value=28 Score=25.93 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHhhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhH
Q 030345 62 RRFLSFVGPGFLVSLA-YLDPGNLETDLQAGANHRYEL 98 (179)
Q Consensus 62 ~~~l~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~L 98 (179)
+++-+..+|.++++++ .+|+-.+-.+..+|++|.-+-
T Consensus 52 ~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP 89 (202)
T d1wa3a1 52 KELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSP 89 (202)
T ss_dssp HHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred HHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeCC
Confidence 4444457899999887 689999999999999997544
No 8
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.95 E-value=79 Score=18.73 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=16.9
Q ss_pred HHHHHhHhhhhcCCCHHHHHHhHcC
Q 030345 112 IQSLAANLGVSTGKHLSELCKAEYP 136 (179)
Q Consensus 112 lQ~~aaRlgivTG~~L~e~ir~~~g 136 (179)
+.++|.++|..+...+...+++++|
T Consensus 17 i~~IA~~~Gf~~~~~F~r~Fk~~~G 41 (65)
T d1d5ya2 17 ILDIALQYRFDSQQTFTRAFKKQFA 41 (65)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHC
Confidence 5566667777666666666766666
No 9
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=81 Score=18.48 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHhHhhhhcCCCHHHHHHhHcCc
Q 030345 112 IQSLAANLGVSTGKHLSELCKAEYPI 137 (179)
Q Consensus 112 lQ~~aaRlgivTG~~L~e~ir~~~gk 137 (179)
+.+++.++|..+-..+...++++||-
T Consensus 17 i~~IA~~~Gf~~~~~F~r~Fk~~~g~ 42 (62)
T d1bl0a2 17 ILYLAERYGFESQQTLTRTFKNYFDV 42 (62)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCc
Confidence 45666666666666666666666663
No 10
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=4.63 E-value=2.5e+02 Score=20.23 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchH
Q 030345 106 LIFALIIQSLAANLGVSTGKHLSELCKAEYPIIV 139 (179)
Q Consensus 106 ~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~ 139 (179)
.++.+++|+ .+||++..|.+.+|+..++
T Consensus 177 Ai~G~~~qe------~vtG~gp~~nl~~h~~~P~ 204 (218)
T d1rwta_ 177 SMFGFFVQA------IVTGKGPLENLADHLADPV 204 (218)
T ss_dssp HHHHHHHHH------HHHCSCHHHHHHHHHHCTT
T ss_pred HHHHHHHhh------hhcCCCHHHHHHHHhcCch
Confidence 455666775 4799999999999986554
Done!