Query 030347
Match_columns 179
No_of_seqs 134 out of 148
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_C SAGA-associated factor 100.0 3.1E-34 1.1E-38 216.9 7.1 91 11-122 7-99 (99)
2 3vhs_A ATPase wrnip1; zinc fin 95.6 0.0041 1.4E-07 37.0 1.4 24 93-116 6-29 (29)
3 2vy4_A U11/U12 small nuclear r 93.0 0.043 1.5E-06 34.1 1.8 27 91-117 3-30 (37)
4 2lo3_A SAGA-associated factor 88.3 0.23 8E-06 32.3 2.0 29 90-118 14-43 (44)
5 2d9k_A FLN29 gene product; zin 73.7 2 6.7E-05 28.6 2.4 27 92-118 42-68 (75)
6 3fwb_B Nuclear mRNA export pro 70.4 6.3 0.00022 26.4 4.2 28 12-39 11-38 (55)
7 1wjv_A Cell growth regulating 68.7 1.7 5.7E-05 31.4 1.1 28 90-117 7-34 (79)
8 3mhs_E SAGA-associated factor 63.3 2.5 8.6E-05 31.5 1.2 25 90-114 72-96 (96)
9 3fwc_B Nuclear mRNA export pro 54.4 14 0.00049 26.5 3.9 28 12-39 41-68 (85)
10 2czr_A TBP-interacting protein 38.6 10 0.00035 31.8 1.1 23 92-114 153-175 (226)
11 3na7_A HP0958; flagellar bioge 36.7 13 0.00043 30.6 1.4 16 90-105 219-234 (256)
12 1rmd_A RAG1; V(D)J recombinati 35.3 8.8 0.0003 27.2 0.2 26 92-117 87-114 (116)
13 2i5o_A DNA polymerase ETA; zin 35.1 18 0.00062 22.5 1.7 24 90-113 6-29 (39)
14 2kvf_A Zinc finger and BTB dom 31.9 17 0.00057 17.9 1.0 13 93-105 3-15 (28)
15 1ard_A Yeast transcription fac 30.1 17 0.00059 17.8 0.8 13 93-105 2-14 (29)
16 2kvh_A Zinc finger and BTB dom 29.6 19 0.00064 17.7 0.9 12 93-104 3-14 (27)
17 1p7a_A BF3, BKLF, kruppel-like 29.0 18 0.00062 19.2 0.8 13 92-104 10-22 (37)
18 1znf_A 31ST zinc finger from X 28.9 18 0.00063 17.5 0.8 11 94-104 2-12 (27)
19 2m0d_A Zinc finger and BTB dom 28.8 20 0.0007 17.5 1.0 12 93-104 3-14 (30)
20 1rik_A E6APC1 peptide; E6-bind 28.3 20 0.00069 17.6 0.9 12 93-104 2-13 (29)
21 1paa_A Yeast transcription fac 27.6 19 0.00064 17.9 0.7 12 93-104 2-13 (30)
22 2kvg_A Zinc finger and BTB dom 27.5 19 0.00064 17.9 0.7 12 93-104 3-14 (27)
23 3q87_A Putative uncharacterize 27.1 21 0.00073 27.4 1.2 18 93-110 99-116 (125)
24 2lvu_A Zinc finger and BTB dom 32.5 14 0.00047 18.1 0.0 12 93-104 2-13 (26)
25 1klr_A Zinc finger Y-chromosom 26.4 20 0.00068 17.5 0.6 21 93-113 2-23 (30)
26 1lv3_A Hypothetical protein YA 26.2 23 0.0008 24.6 1.1 24 92-115 8-35 (68)
27 2elt_A Zinc finger protein 406 25.9 23 0.00079 18.5 0.9 21 92-112 8-29 (36)
28 2m0f_A Zinc finger and BTB dom 25.6 25 0.00084 17.1 0.9 21 93-113 2-23 (29)
29 2m0e_A Zinc finger and BTB dom 25.4 23 0.00077 17.2 0.8 12 93-104 2-13 (29)
30 2elq_A Zinc finger protein 406 25.2 24 0.00083 18.6 0.9 21 92-112 8-29 (36)
31 1nyp_A Pinch protein; LIM doma 24.6 22 0.00077 22.4 0.8 20 92-111 30-49 (66)
32 2elr_A Zinc finger protein 406 24.4 25 0.00084 18.4 0.8 21 92-112 8-29 (36)
33 2els_A Zinc finger protein 406 24.2 35 0.0012 17.9 1.5 13 92-104 8-20 (36)
34 2elp_A Zinc finger protein 406 24.2 26 0.00089 18.6 0.9 14 92-105 8-21 (37)
35 2csh_A Zinc finger protein 297 24.1 35 0.0012 22.7 1.7 27 92-118 64-91 (110)
36 3hct_A TNF receptor-associated 23.8 23 0.00078 25.2 0.8 27 91-117 80-108 (118)
37 1srk_A Zinc finger protein ZFP 23.7 28 0.00095 18.1 1.0 20 93-112 7-27 (35)
38 2elx_A Zinc finger protein 406 23.3 29 0.00099 17.9 1.0 13 93-105 7-19 (35)
39 2egq_A FHL1 protein; LIM domai 23.2 25 0.00086 22.8 0.8 20 92-111 45-64 (77)
40 1bh9_A TAFII18; histone fold, 23.0 1E+02 0.0035 19.4 3.7 24 10-34 18-41 (45)
41 2elm_A Zinc finger protein 406 23.0 28 0.00094 18.8 0.9 13 92-104 8-20 (37)
42 3hcs_A TNF receptor-associated 22.8 23 0.0008 26.6 0.7 25 93-117 137-161 (170)
43 2iyb_E Testin, TESS, TES; LIM 22.0 25 0.00087 22.3 0.6 21 91-111 30-50 (65)
44 2lvr_A Zinc finger and BTB dom 27.6 19 0.00065 17.8 0.0 12 93-104 3-14 (30)
45 2elv_A Zinc finger protein 406 21.6 32 0.0011 18.0 1.0 13 92-104 8-20 (36)
46 1l8d_A DNA double-strand break 21.1 27 0.00094 24.7 0.7 12 94-105 48-59 (112)
47 1x3h_A Leupaxin; paxillin fami 20.4 31 0.0011 22.5 0.8 20 92-111 40-59 (80)
48 1x4l_A Skeletal muscle LIM-pro 20.1 31 0.0011 22.1 0.8 21 91-111 33-53 (72)
49 1x61_A Thyroid receptor intera 20.1 30 0.001 22.1 0.7 20 92-111 32-51 (72)
No 1
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=100.00 E-value=3.1e-34 Score=216.86 Aligned_cols=91 Identities=26% Similarity=0.537 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccCccchhhHHHHHHH-HHhhhhhcCCCCCCCCCCCcccceeCccCCC
Q 030347 11 AHSQLSSHFFEDLLDSIIVDVAS-ECHRVARLGLDRNFEEEEEELRLS-AQARARVADSSNNGETNSKYVVDIFGQTHPA 88 (179)
Q Consensus 11 ~l~~LA~~Iy~dLLddiIlDIv~-EvHR~~KlGl~~~l~~~~~el~~~-~~a~~~~~Dps~~~~~~~~~~~DIfG~~~~~ 88 (179)
.+++++++||++||+++|+|||+ |+++.+++ +++ +..+.+..++ .+++||||+++++
T Consensus 7 t~~~~s~~Iy~nLl~~~i~dIv~~e~~~~k~l-------------~~r~p~~k~y~~~~--------~~~lDIfG~~~~~ 65 (99)
T 3mhs_C 7 TIDSISNGILNNLLTTLIQDIVARETTQQQLL-------------KTRYPDLRSYYFDP--------NGSLDINGLQKQQ 65 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCTTCCCCCCCT--------TSCSCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCCCCCCceecC--------CCCcccCCCcCcc
Confidence 58999999999999999999999 55554441 211 1123333333 4789999999998
Q ss_pred CCCceeeeCCCCCcccccccchhHHHhhcCCccc
Q 030347 89 VANEIFECMNCGRSIVAGRFAPHLEKCMGKGRKA 122 (179)
Q Consensus 89 ~~~~~~~C~nC~R~v~a~RfA~HLekCmg~gr~s 122 (179)
+++++|+|+||+|+|+|+|||||||||||+||++
T Consensus 66 ~~s~~~~C~nC~R~vaa~RFApHLeKCmg~GR~~ 99 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR 99 (99)
T ss_dssp TTSCEEECTTTCCEEEGGGHHHHHHHHSCC----
T ss_pred cCCCeEECCCCCCCchhhhhHHHHHHHHccCCCC
Confidence 8999999999999999999999999999999864
No 2
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=95.63 E-value=0.0041 Score=36.99 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=22.5
Q ss_pred eeeeCCCCCcccccccchhHHHhh
Q 030347 93 IFECMNCGRSIVAGRFAPHLEKCM 116 (179)
Q Consensus 93 ~~~C~nC~R~v~a~RfA~HLekCm 116 (179)
.++||.|...+.+.-.-.||++|+
T Consensus 6 ~vqcpvcqq~mpaahin~hldrcl 29 (29)
T 3vhs_A 6 QVQCPVCQQMMPAAHINSHLDRCL 29 (29)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHC
T ss_pred eeeChHHHHhCcHHHHHHHHhccC
Confidence 479999999999999999999996
No 3
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=93.02 E-value=0.043 Score=34.11 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=24.3
Q ss_pred CceeeeC-CCCCcccccccchhHHHhhc
Q 030347 91 NEIFECM-NCGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 91 ~~~~~C~-nC~R~v~a~RfA~HLekCmg 117 (179)
.+++.|| |..=.|...||..||.||--
T Consensus 3 ~~~v~CPyd~~H~i~~~~l~~Hl~kC~~ 30 (37)
T 2vy4_A 3 DEVVICPYDSNHHMPKSSLAKHMASCRL 30 (37)
T ss_dssp CCCEECTTTSSCEECGGGHHHHHHHHHH
T ss_pred ceEEECCCCCCeEeCHHHHHHHHHHHhh
Confidence 4689999 99999999999999999964
No 4
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=88.32 E-value=0.23 Score=32.32 Aligned_cols=29 Identities=28% Similarity=0.652 Sum_probs=26.0
Q ss_pred CCceeeeCCCCCcccccccchhHHH-hhcC
Q 030347 90 ANEIFECMNCGRSIVAGRFAPHLEK-CMGK 118 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a~RfA~HLek-Cmg~ 118 (179)
...|-.|..|||+|+.+-.--|||. |-|+
T Consensus 14 ~~~YRvC~~CgkPi~lsAIvdHLenhC~~~ 43 (44)
T 2lo3_A 14 PIQYRVCEKCGKPLALTAIVDHLENHCAGA 43 (44)
T ss_dssp CCCEEECTTTCCEEETTTHHHHHHHCCTTC
T ss_pred cccchhhcccCCcchHHHHHHHHHHHhccC
Confidence 5679999999999999999999998 8764
No 5
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.73 E-value=2 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.1
Q ss_pred ceeeeCCCCCcccccccchhHHHhhcC
Q 030347 92 EIFECMNCGRSIVAGRFAPHLEKCMGK 118 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~HLekCmg~ 118 (179)
..+.|++|++.|.-.-+..|+..|.+.
T Consensus 42 ~~~~C~~C~~~~~~~~l~~H~~~c~~~ 68 (75)
T 2d9k_A 42 RTELCGNCGRNVLVKDLKTHPEVCGRE 68 (75)
T ss_dssp CEEECSSSCCEEETTGGGTHHHHBTTB
T ss_pred CceEcccCCCcCcHHHHHHHHHHccCC
Confidence 458999999988888889999999875
No 6
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=70.35 E-value=6.3 Score=26.43 Aligned_cols=28 Identities=4% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 030347 12 HSQLSSHFFEDLLDSIIVDVASECHRVA 39 (179)
Q Consensus 12 l~~LA~~Iy~dLLddiIlDIv~EvHR~~ 39 (179)
++.|+.++|+.+|.++|..+++|+.-+.
T Consensus 11 I~sLs~eLy~AFihE~lY~~~leskAd~ 38 (55)
T 3fwb_B 11 IDTMTRELYDAFLHERLYLIYMDSRAEL 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876654
No 7
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=68.66 E-value=1.7 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=25.3
Q ss_pred CCceeeeCCCCCcccccccchhHHHhhc
Q 030347 90 ANEIFECMNCGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a~RfA~HLekCmg 117 (179)
..+.|.|..|+-.|-=...++|+.+|-+
T Consensus 7 ~MV~F~C~~Cgd~lKK~kv~~H~~~Cr~ 34 (79)
T 1wjv_A 7 GMVFFTCNACGESVKKIQVEKHVSNCRN 34 (79)
T ss_dssp CCCEEEESSSCCEEETTHHHHHHHHCTT
T ss_pred ceeEEEcCCCCCeeecccchhHHhhCCC
Confidence 3578999999999999999999999965
No 8
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=63.29 E-value=2.5 Score=31.53 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.7
Q ss_pred CCceeeeCCCCCcccccccchhHHH
Q 030347 90 ANEIFECMNCGRSIVAGRFAPHLEK 114 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a~RfA~HLek 114 (179)
...|-.|-.||++|+.+-.--|||.
T Consensus 72 ~~~YRvCn~CGkPI~l~AIvDHLen 96 (96)
T 3mhs_E 72 PIQYRVCEKCGKPLALTAIVDHLEN 96 (96)
T ss_dssp SCCCEEETTTCCEECGGGTTTCCC-
T ss_pred cccchhhhccCCceeHHHHHHHhhC
Confidence 3678899999999999999999973
No 9
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=54.38 E-value=14 Score=26.49 Aligned_cols=28 Identities=4% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 030347 12 HSQLSSHFFEDLLDSIIVDVASECHRVA 39 (179)
Q Consensus 12 l~~LA~~Iy~dLLddiIlDIv~EvHR~~ 39 (179)
++.|++++|+.+|.+++..+++|+.-..
T Consensus 41 I~sLs~eLy~AFihE~lY~~~leskAd~ 68 (85)
T 3fwc_B 41 IDTMTRELYDAFLHERLYLIYMDSRAEL 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999876543
No 10
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=38.61 E-value=10 Score=31.75 Aligned_cols=23 Identities=22% Similarity=0.741 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcccccccchhHHH
Q 030347 92 EIFECMNCGRSIVAGRFAPHLEK 114 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~HLek 114 (179)
+.+.|..|++.|-.--|+.||.+
T Consensus 153 QFYKCe~CgKYvDId~~~~Hlk~ 175 (226)
T 2czr_A 153 QFYKCEECGKYVDIENLEAHLRE 175 (226)
T ss_dssp EEEECTTTCCEEEGGGHHHHHHT
T ss_pred EEEehhhcCceecHHHHHHHHHH
Confidence 57899999999999999999975
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.69 E-value=13 Score=30.59 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=12.9
Q ss_pred CCceeeeCCCCCcccc
Q 030347 90 ANEIFECMNCGRSIVA 105 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a 105 (179)
....+.||+|||-+--
T Consensus 219 ~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 219 SGDMITCPYCGRILYA 234 (256)
T ss_dssp SSSCEECTTTCCEEEC
T ss_pred CCCEEECCCCCeeEEe
Confidence 4567999999998764
No 12
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=35.28 E-value=8.8 Score=27.16 Aligned_cols=26 Identities=12% Similarity=0.429 Sum_probs=22.9
Q ss_pred ceeeeCC--CCCcccccccchhHHHhhc
Q 030347 92 EIFECMN--CGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 92 ~~~~C~n--C~R~v~a~RfA~HLekCmg 117 (179)
..+.|+| |+..+....+..|++.|.-
T Consensus 87 l~v~C~~~gC~~~~~~~~~~~H~~~C~~ 114 (116)
T 1rmd_A 87 LMVKCPAQDCNEEVSLEKYNHHVSSHKE 114 (116)
T ss_dssp CEEECCSTTCCCEEEHHHHHHHHHTSCC
T ss_pred hcCCCCCCCCcchhhHhHHHHHHHHhhc
Confidence 4678997 9999999999999999965
No 13
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.12 E-value=18 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=18.0
Q ss_pred CCceeeeCCCCCcccccccchhHH
Q 030347 90 ANEIFECMNCGRSIVAGRFAPHLE 113 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a~RfA~HLe 113 (179)
+...+.|+.|+..|..--+--|++
T Consensus 6 ~~~~~~C~~C~~~i~~~~~~EH~D 29 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPVWDMPEHMD 29 (39)
T ss_dssp CCCEEECTTTCCEEEGGGHHHHHH
T ss_pred cCCCcccccccCcCCcccccchhh
Confidence 345789999999998866655653
No 14
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.92 E-value=17 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=10.1
Q ss_pred eeeeCCCCCcccc
Q 030347 93 IFECMNCGRSIVA 105 (179)
Q Consensus 93 ~~~C~nC~R~v~a 105 (179)
.+.|+.|++.+.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4899999997653
No 15
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.11 E-value=17 Score=17.80 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.0
Q ss_pred eeeeCCCCCcccc
Q 030347 93 IFECMNCGRSIVA 105 (179)
Q Consensus 93 ~~~C~nC~R~v~a 105 (179)
.|.|+.|++...-
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999987643
No 16
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.63 E-value=19 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=9.7
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.+.|+.|++.+.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 489999998754
No 17
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.04 E-value=18 Score=19.18 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=10.5
Q ss_pred ceeeeCCCCCccc
Q 030347 92 EIFECMNCGRSIV 104 (179)
Q Consensus 92 ~~~~C~nC~R~v~ 104 (179)
..|.|+.|++...
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 3589999999765
No 18
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.95 E-value=18 Score=17.51 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=8.9
Q ss_pred eeeCCCCCccc
Q 030347 94 FECMNCGRSIV 104 (179)
Q Consensus 94 ~~C~nC~R~v~ 104 (179)
+.|..|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 68999998764
No 19
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.81 E-value=20 Score=17.49 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.8
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.+.|..|++...
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 489999999764
No 20
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.32 E-value=20 Score=17.59 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=9.6
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|+.|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 378999998754
No 21
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.60 E-value=19 Score=17.88 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.5
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|+.|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1paa_A 2 AYACGLCNRAFT 13 (30)
T ss_dssp CSBCTTTCCBCS
T ss_pred CcCCcccCcccC
Confidence 378999998764
No 22
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.51 E-value=19 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=9.6
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.+.|+.|++...
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999998654
No 23
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=27.07 E-value=21 Score=27.37 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.8
Q ss_pred eeeeCCCCCcccccccch
Q 030347 93 IFECMNCGRSIVAGRFAP 110 (179)
Q Consensus 93 ~~~C~nC~R~v~a~RfA~ 110 (179)
...||+|||...+.+.-|
T Consensus 99 ~L~Cp~cgr~ypI~~GIP 116 (125)
T 3q87_A 99 SLRCDMCGLIYPIKGSIV 116 (125)
T ss_dssp EEEETTTCCEEEEETTEE
T ss_pred EEECCCCCCEeeccCCcc
Confidence 689999999988776555
No 24
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.53 E-value=14 Score=18.08 Aligned_cols=12 Identities=33% Similarity=0.982 Sum_probs=9.5
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.+.|+.|++...
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 378999998764
No 25
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.38 E-value=20 Score=17.54 Aligned_cols=21 Identities=14% Similarity=0.524 Sum_probs=13.5
Q ss_pred eeeeCCCCCcccc-cccchhHH
Q 030347 93 IFECMNCGRSIVA-GRFAPHLE 113 (179)
Q Consensus 93 ~~~C~nC~R~v~a-~RfA~HLe 113 (179)
.+.|+.|++.+.- .-+..|+.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHHHH
Confidence 3789999997653 33444543
No 26
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=26.16 E-value=23 Score=24.61 Aligned_cols=24 Identities=29% Similarity=0.830 Sum_probs=16.3
Q ss_pred ceeeeCCCCCcccc---cccchhH-HHh
Q 030347 92 EIFECMNCGRSIVA---GRFAPHL-EKC 115 (179)
Q Consensus 92 ~~~~C~nC~R~v~a---~RfA~HL-ekC 115 (179)
....||.|+++|.- +.|-|.= +||
T Consensus 8 ~~~~CP~Cgkp~~W~~~~~~rPFCSeRC 35 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEISPFRPFCSKRC 35 (68)
T ss_dssp CEEECTTTCCEEECSSSSSCCSSSSHHH
T ss_pred CcCcCCCCCCcccccccCCCCcccCHHH
Confidence 46899999999973 3444432 446
No 27
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.90 E-value=23 Score=18.50 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=13.6
Q ss_pred ceeeeCCCCCcccc-cccchhH
Q 030347 92 EIFECMNCGRSIVA-GRFAPHL 112 (179)
Q Consensus 92 ~~~~C~nC~R~v~a-~RfA~HL 112 (179)
..|.|+.|++.+.- .-+..|+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNVHL 29 (36)
T ss_dssp CSEECSSSSCEESSHHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHHH
Confidence 35999999997643 2334444
No 28
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.58 E-value=25 Score=17.08 Aligned_cols=21 Identities=29% Similarity=0.831 Sum_probs=13.0
Q ss_pred eeeeCCCCCccc-ccccchhHH
Q 030347 93 IFECMNCGRSIV-AGRFAPHLE 113 (179)
Q Consensus 93 ~~~C~nC~R~v~-a~RfA~HLe 113 (179)
.|.|+.|++... ..-+..|+.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLR 23 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHH
Confidence 378999998754 223444543
No 29
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.40 E-value=23 Score=17.15 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=9.4
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.+.|+.|++...
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 378999998764
No 30
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.23 E-value=24 Score=18.57 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=13.8
Q ss_pred ceeeeCCCCCcccc-cccchhH
Q 030347 92 EIFECMNCGRSIVA-GRFAPHL 112 (179)
Q Consensus 92 ~~~~C~nC~R~v~a-~RfA~HL 112 (179)
..|.|+.|++.+.- ..+..|+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLKAHM 29 (36)
T ss_dssp CSEECSSSSCEESCHHHHHHHH
T ss_pred CCccCCCCCchhCCHHHHHHHH
Confidence 35999999997653 3334443
No 31
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.55 E-value=22 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=17.0
Q ss_pred ceeeeCCCCCcccccccchh
Q 030347 92 EIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~H 111 (179)
.-|.|..|++++....|..|
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~ 49 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYER 49 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEEE
T ss_pred CcCEECCCCCCCCCCceEeE
Confidence 46899999999998888765
No 32
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.42 E-value=25 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=13.7
Q ss_pred ceeeeCCCCCcccc-cccchhH
Q 030347 92 EIFECMNCGRSIVA-GRFAPHL 112 (179)
Q Consensus 92 ~~~~C~nC~R~v~a-~RfA~HL 112 (179)
..+.|+.|++.+.- ..+..|+
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSHK 29 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHHH
Confidence 35899999997653 2334444
No 33
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.23 E-value=35 Score=17.89 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.6
Q ss_pred ceeeeCCCCCccc
Q 030347 92 EIFECMNCGRSIV 104 (179)
Q Consensus 92 ~~~~C~nC~R~v~ 104 (179)
..|.|+.|++.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 3599999999764
No 34
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=26 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.448 Sum_probs=11.1
Q ss_pred ceeeeCCCCCcccc
Q 030347 92 EIFECMNCGRSIVA 105 (179)
Q Consensus 92 ~~~~C~nC~R~v~a 105 (179)
..|.|+.|++.+.-
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 8 RAMKCPYCDFYFMK 21 (37)
T ss_dssp CCEECSSSSCEECS
T ss_pred CCeECCCCChhhcc
Confidence 35999999997654
No 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.12 E-value=35 Score=22.68 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.1
Q ss_pred ceeeeCCCCCccc-ccccchhHHHhhcC
Q 030347 92 EIFECMNCGRSIV-AGRFAPHLEKCMGK 118 (179)
Q Consensus 92 ~~~~C~nC~R~v~-a~RfA~HLekCmg~ 118 (179)
..|.|+.|++.+. ..-+..|+..|...
T Consensus 64 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~ 91 (110)
T 2csh_A 64 KPYECNICAKRFMWRDSFHRHVTSCTKS 91 (110)
T ss_dssp CCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred CCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence 3599999999775 45678899888763
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=23.85 E-value=23 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.2
Q ss_pred CceeeeC--CCCCcccccccchhHHHhhc
Q 030347 91 NEIFECM--NCGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 91 ~~~~~C~--nC~R~v~a~RfA~HLekCmg 117 (179)
...+.|+ .|+-.+....+..||++|.-
T Consensus 80 ~l~v~C~n~gC~~~~~~~~l~~H~~~c~~ 108 (118)
T 3hct_A 80 SLMVKCPNEGCLHKMELRHLEDHQAHCEF 108 (118)
T ss_dssp TSEEECSSTTCCCEEEGGGSGGGTSSSCC
T ss_pred cceeECCCCCCCCEEeeHHHHHHHHHchh
Confidence 3568896 89999999999999999964
No 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.71 E-value=28 Score=18.11 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=13.6
Q ss_pred eeeeCCCCCcccc-cccchhH
Q 030347 93 IFECMNCGRSIVA-GRFAPHL 112 (179)
Q Consensus 93 ~~~C~nC~R~v~a-~RfA~HL 112 (179)
.|.|..|++.+.- .-+..|+
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H~ 27 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARHL 27 (35)
T ss_dssp CEECSSSCCEESSHHHHHHHH
T ss_pred CeeCCCCCcccCCHHHHHHHH
Confidence 5899999997643 3344454
No 38
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.25 E-value=29 Score=17.89 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.4
Q ss_pred eeeeCCCCCcccc
Q 030347 93 IFECMNCGRSIVA 105 (179)
Q Consensus 93 ~~~C~nC~R~v~a 105 (179)
.|.|+.|++.+.-
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 5899999997643
No 39
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=25 Score=22.78 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.1
Q ss_pred ceeeeCCCCCcccccccchh
Q 030347 92 EIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~H 111 (179)
.-|.|..|++++....|..|
T Consensus 45 ~CF~C~~C~~~L~~~~f~~~ 64 (77)
T 2egq_A 45 YCFHCKKCSVNLANKRFVFH 64 (77)
T ss_dssp TTCBCSSSCCBCTTSCCCEE
T ss_pred ccCEehhcCCCCCCCccEeE
Confidence 46899999999998888765
No 40
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=23.01 E-value=1e+02 Score=19.37 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 030347 10 SAHSQLSSHFFEDLLDSIIVDVASE 34 (179)
Q Consensus 10 s~l~~LA~~Iy~dLLddiIlDIv~E 34 (179)
.++.+ +-.+.+++|-+.|.+++.+
T Consensus 18 ~P~~E-Tv~llEeiV~~~i~~l~~~ 41 (45)
T 1bh9_A 18 NPYTE-SVDILEDLVIEFITEMTHK 41 (45)
T ss_dssp SCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHHHHHH
Confidence 34555 4566677777777777654
No 41
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.98 E-value=28 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.6
Q ss_pred ceeeeCCCCCccc
Q 030347 92 EIFECMNCGRSIV 104 (179)
Q Consensus 92 ~~~~C~nC~R~v~ 104 (179)
..|.|..|++.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elm_A 8 HLYYCSQCHYSSI 20 (37)
T ss_dssp CEEECSSSSCEEE
T ss_pred cCeECCCCCcccC
Confidence 3599999999764
No 42
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=22.81 E-value=23 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=14.9
Q ss_pred eeeeCCCCCcccccccchhHHHhhc
Q 030347 93 IFECMNCGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 93 ~~~C~nC~R~v~a~RfA~HLekCmg 117 (179)
...|+.|+..|...-.+.|.+.|-|
T Consensus 137 ~~~C~~C~~~~~~~~l~~H~~~~~~ 161 (170)
T 3hcs_A 137 QVSCDNCAASMAFEDKEIHDQNCPL 161 (170)
T ss_dssp EEECTTTCCEEEGGGHHHHHTTCCC
T ss_pred CeECCCCCCccCHHHHHhHHHhCcC
Confidence 3456666666666666666666554
No 43
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.02 E-value=25 Score=22.34 Aligned_cols=21 Identities=29% Similarity=0.797 Sum_probs=17.7
Q ss_pred CceeeeCCCCCcccccccchh
Q 030347 91 NEIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 91 ~~~~~C~nC~R~v~a~RfA~H 111 (179)
..-|.|..|++++...+|..+
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~ 50 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPV 50 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEE
T ss_pred CCCEECCCCCCcCCCCceEEE
Confidence 456899999999998888765
No 44
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.59 E-value=19 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.6
Q ss_pred eeeeCCCCCccc
Q 030347 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|+.|++.+.
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 478999998764
No 45
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=32 Score=18.03 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=10.4
Q ss_pred ceeeeCCCCCccc
Q 030347 92 EIFECMNCGRSIV 104 (179)
Q Consensus 92 ~~~~C~nC~R~v~ 104 (179)
..|.|+.|++.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elv_A 8 LLYDCHICERKFK 20 (36)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeECCCCCCccC
Confidence 3589999998654
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.11 E-value=27 Score=24.73 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.0
Q ss_pred eeeCCCCCcccc
Q 030347 94 FECMNCGRSIVA 105 (179)
Q Consensus 94 ~~C~nC~R~v~a 105 (179)
-.||.||+.+.-
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 369999999884
No 47
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.37 E-value=31 Score=22.48 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=17.3
Q ss_pred ceeeeCCCCCcccccccchh
Q 030347 92 EIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~H 111 (179)
.-|.|..|++++....|..|
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~ 59 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFEL 59 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEES
T ss_pred CcCChhhCCCCCCCCcEEeE
Confidence 46899999999998888875
No 48
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.14 E-value=31 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=17.6
Q ss_pred CceeeeCCCCCcccccccchh
Q 030347 91 NEIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 91 ~~~~~C~nC~R~v~a~RfA~H 111 (179)
..-|.|..|++++....|..|
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~ 53 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTE 53 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEEC
T ss_pred cccCEeccCCCcCCCCccEeE
Confidence 356999999999998888754
No 49
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.13 E-value=30 Score=22.09 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=16.8
Q ss_pred ceeeeCCCCCcccccccchh
Q 030347 92 EIFECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~H 111 (179)
.-|.|..|++++...+|..+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~ 51 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAV 51 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEES
T ss_pred cCCcccccCCcCCcCcCEee
Confidence 46899999999987778765
Done!