BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030348
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 46 LQTVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVL-KAVRRA 104
LQTVE+KV+M C GCER V+ ++ ++GV SV +E + KVT VGYVD NKV+ + R
Sbjct: 25 LQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRT 84
Query: 105 GKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKV 164
GK+ E WPY Y A+ Y ++ K Y R + G L + +
Sbjct: 85 GKKVELWPYVP---YDVVAHPYAAGVYDK-KAPSGYVRRVDDPGVSQ--LARASSTEVRY 138
Query: 165 SNMFNDDNVNACCLM 179
+ F+D+N AC +M
Sbjct: 139 TTAFSDENPAACVVM 153
>sp|Q54PZ2|ATOX1_DICDI Copper transport protein ATOX1 homolog OS=Dictyostelium discoideum
GN=atox1 PE=3 SV=2
Length = 67
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 53 VRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTA-VGYVDRNKVLKAVRRAGKRAEFW 111
V M C GC + V + K+ GV +++++LE +KV+ + +++LK +++ GK+
Sbjct: 7 VDMTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGADELLKNIQKTGKKCSII 66
Query: 112 P 112
Sbjct: 67 A 67
>sp|Q9X5X3|ATCU_SINMW Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain
WSM419) GN=actP PE=1 SV=1
Length = 827
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAV--GYVDRNKVLKAVRRAG 105
M C C R V+ AI + GV S V L E+ T G + VL+AV +AG
Sbjct: 24 MTCASCVRRVEKAIAAVPGVASANVNLATERATVQFNGVPETTSVLRAVEKAG 76
>sp|P37617|ATZN_ECOLI Lead, cadmium, zinc and mercury-transporting ATPase OS=Escherichia
coli (strain K12) GN=zntA PE=1 SV=1
Length = 732
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVD-RNKVLKAVRRAG 105
M C C R V+NA+ +L GV+ V+V EK+ D R +V A+++AG
Sbjct: 57 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 108
>sp|P58342|ATCU2_RHIME Copper-transporting ATPase 2 OS=Rhizobium meliloti (strain 1021)
GN=actP2 PE=3 SV=1
Length = 827
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 40 KGRPLSLQTVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAV--GYVDRNKV 97
K PL + T M C C R V+ AI + GV S V L E+ T G D V
Sbjct: 9 KAAPLPVSTNFGIEGMTCASCVRRVEKAITAVPGVASANVNLATERATVQFDGEPDTLAV 68
Query: 98 LKAVRRAG 105
L A+ +AG
Sbjct: 69 LHAIEKAG 76
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 53 VRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRA 108
V M C C V +++ L G+ +++L+ VT G V ++++KA++ GK A
Sbjct: 11 VPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDA 66
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 48 TVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKR 107
T V + C C VK A+ ++G++SV+ +L + ++ G ++++KAV+ GK
Sbjct: 4 TTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKD 63
Query: 108 A 108
A
Sbjct: 64 A 64
>sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS
PE=1 SV=1
Length = 274
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 45 SLQTVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRA 104
+L T+E V+M C C V+ ++ + GV VEV LE + V + +V +
Sbjct: 10 TLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT 69
Query: 105 GKRA 108
G++A
Sbjct: 70 GRQA 73
>sp|P58341|ATCU1_RHIME Copper-transporting ATPase 1 OS=Rhizobium meliloti (strain 1021)
GN=actP1 PE=3 SV=1
Length = 826
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTA--VGYVDRNKVLKAVRRAG 105
M C C R V+ AI + GV S V L E+ + G D VL A+ +AG
Sbjct: 24 MTCASCVRRVEKAISAVPGVASATVNLATERASVQFTGAPDTGGVLLAIEKAG 76
>sp|B1L6M8|ATGT_KORCO tRNA-guanine(15) transglycosylase OS=Korarchaeum cryptofilum
(strain OPF8) GN=tgtA PE=3 SV=1
Length = 590
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 60 CERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFW--PYPNPP 117
C ++ + GV S++V LE K V VD ++++ RAGK FW +P+
Sbjct: 179 CSERIRELDFDYNGVGSIKVALE--KYDFVTQVDHFMSIRSILRAGKPFHFWGIGHPSTF 236
Query: 118 LYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTL 154
+F + D+ SY+ Y HGTL
Sbjct: 237 AFFAAIGADSFDSA-----SYSLYAEQGRYMTPHGTL 268
>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
SV=1
Length = 961
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAE 109
M C C V+NA+ ++ GV V L G + ++ AV+ AG AE
Sbjct: 235 MSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAE 289
>sp|Q7N601|SULA_PHOLL Cell division inhibitor SulA OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=sulA PE=3 SV=1
Length = 177
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 42 RPLSLQTVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDR-NKVLKA 100
R S+ TVE R +G VV + L G D+V ++ +K A+G++ R V K
Sbjct: 99 RMSSITTVEAMERALASGNYSVVLGWLPTLSGKDTVRLQAAAQKGNALGFIMRPQDVSKE 158
Query: 101 VRRAGKRAEF 110
RA R++
Sbjct: 159 TSRAESRSDL 168
>sp|Q59385|COPA_ECOLI Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12)
GN=copA PE=1 SV=4
Length = 834
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAE 109
M C C V+NA+ + GV V L +G +++AV +AG AE
Sbjct: 108 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 162
>sp|Q8XD24|COPA_ECO57 Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7
GN=copA PE=3 SV=3
Length = 834
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAE 109
M C C V+NA+ + GV V L +G +++AV +AG AE
Sbjct: 108 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 162
>sp|Q6PWT7|CCS_PIG Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2
SV=1
Length = 274
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 49 VELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRA 108
+E V+M C C V ++ + G+ SVEV+LE + V + V + G++A
Sbjct: 14 LEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQA 73
>sp|Q5FJH9|RSGA_LACAC Putative ribosome biogenesis GTPase RsgA OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=rsgA PE=3 SV=1
Length = 296
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 111 WPYPNPPLYFTSANNYFKDTTNEFKESYNYYRH-GYNVGDKHGTLPVTHRGDDKVSNMFN 169
W N +Y + A+ + NE KES +YY+ GY V + H ++K+ +M
Sbjct: 104 WQKVNVTIYLSKADLISEQRLNEIKESLDYYQKIGYPVFIDY------HHLEEKIGDMIK 157
Query: 170 DDNV 173
D+ +
Sbjct: 158 DNQI 161
>sp|P23456|L_HANTV RNA-directed RNA polymerase L OS=Hantaan virus (strain 76-118) GN=L
PE=3 SV=3
Length = 2151
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 1 MATLLAKAFRSVISSIAYCFCLFRYQDKFKTINVNNNMPKGRPLSLQTVE--LKVRMCCT 58
M+ ++ K +RS+IS + CF LF ++ NM + + L+TVE LK R
Sbjct: 705 MSRIVYKHYRSLISEVTTCFFLFEK-------GLHGNMNEEAKIHLETVEWALKFREKEE 757
Query: 59 GC-ERVVKNA--IYKLRG-VDSVEVELELEKVTAVGYVDRNKVL---KAVRRAGKRAEFW 111
E +V+N +++LR + E +L + + ++ NKVL +V ++ W
Sbjct: 758 KYGESLVENGYMMWELRANAELAEQQLYCQDAIELAAIELNKVLATKSSVVANSILSKNW 817
Query: 112 PYPNPPLYFTSANN 125
P YF+ N
Sbjct: 818 EEP----YFSQTRN 827
>sp|O93360|SOMA2_CARAU Somatotropin-2 OS=Carassius auratus GN=gh2 PE=2 SV=1
Length = 210
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 83 LEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYR 142
+E T ++ +LK +R + + E W YP+ L T +N+ N+ E +
Sbjct: 76 IEAPTGKDETQKSSMLKLLRISFRLIESWEYPSQTLSGTVSNSLTAGNPNQITEKLADLK 135
Query: 143 HGYNV 147
G NV
Sbjct: 136 MGINV 140
>sp|Q7NCK4|COMB_GLOVI Probable 2-phosphosulfolactate phosphatase OS=Gloeobacter violaceus
(strain PCC 7421) GN=comB PE=3 SV=1
Length = 236
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 94 RNKVLKAVRRAGKRAEFWPYPNPPLYFTS----ANNYFKDTTNEFKESYNYYRH 143
R +L+ R GK+ E + + N PLY TS F TTN + + RH
Sbjct: 61 REDILRGGERGGKQVEGFDFGNSPLYCTSERVAGKRIFMSTTNGTR-TLERIRH 113
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRA 104
M C C R ++ I K+ GV ++V LE EK V Y + + K ++ A
Sbjct: 17 MTCISCVRTIEQQIGKVNGVHHIKVSLE-EKSATVIYNPKLQTPKTLQEA 65
>sp|Q4L971|COPZ_STAHJ Copper chaperone CopZ OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=copZ PE=3 SV=2
Length = 68
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 55 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKV 97
M C C V++A+ KL GV S EV+L+ +V V Y D N+V
Sbjct: 11 MSCDHCRNAVESALAKLNGVTSAEVDLDKNQVR-VDY-DENRV 51
>sp|Q9JK72|CCS_RAT Copper chaperone for superoxide dismutase OS=Rattus norvegicus
GN=Ccs PE=1 SV=1
Length = 274
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 48 TVELKVRMCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKR 107
+E V+M C C V + GV +VEV+LE + V + +V + G++
Sbjct: 13 ALEFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQ 72
Query: 108 A 108
A
Sbjct: 73 A 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,378,646
Number of Sequences: 539616
Number of extensions: 2608138
Number of successful extensions: 5911
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5889
Number of HSP's gapped (non-prelim): 38
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)