BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030349
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H2U|A Chain A, Crystal Structure Of The E130y Mutant Of Human Soluble
           Calcium-Activated Nucleotidase (Scan) With Calcium Ion
 pdb|2H2U|B Chain B, Crystal Structure Of The E130y Mutant Of Human Soluble
           Calcium-Activated Nucleotidase (Scan) With Calcium Ion
          Length = 339

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 49  WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 104
           WTT+T D+ N     V+  G   S+   N + + N    +A   P  ++ H    W+ T 
Sbjct: 171 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 230

Query: 105 QRWI 108
           QRW 
Sbjct: 231 QRWF 234


>pdb|1S18|A Chain A, Structure And Protein Design Of Human Apyrase
 pdb|1S18|B Chain B, Structure And Protein Design Of Human Apyrase
 pdb|1S1D|A Chain A, Structure And Protein Design Of Human Apyrase
 pdb|1S1D|B Chain B, Structure And Protein Design Of Human Apyrase
          Length = 331

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 49  WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 104
           WTT+T D+ N     V+  G   S+   N + + N    +A   P  ++ H    W+ T 
Sbjct: 163 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 222

Query: 105 QRWI 108
           QRW 
Sbjct: 223 QRWF 226


>pdb|2H2N|A Chain A, Crystal Structure Of Human Soluble Calcium-activated
           Nucleotidase (scan) With Calcium Ion
 pdb|2H2N|B Chain B, Crystal Structure Of Human Soluble Calcium-activated
           Nucleotidase (scan) With Calcium Ion
          Length = 339

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 49  WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 104
           WTT+T D+ N     V+  G   S+   N + + N    +A   P  ++ H    W+ T 
Sbjct: 171 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 230

Query: 105 QRWI 108
           QRW 
Sbjct: 231 QRWF 234


>pdb|3M1E|A Chain A, Crystal Structure Of Benm_dbd
          Length = 94

 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 15 CFIRPPVNTSASNLSKELGVPGRSAGKRSI 44
          C  +PP++    NL +ELG+     G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPV 55


>pdb|3K1M|A Chain A, Crystal Structure Of Full-Length Benm, R156h Mutant
 pdb|3K1M|B Chain B, Crystal Structure Of Full-Length Benm, R156h Mutant
          Length = 312

 Score = 26.2 bits (56), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 15 CFIRPPVNTSASNLSKELGVPGRSAGKRSI 44
          C  +PP++    NL +ELG+     G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPV 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,778,232
Number of Sequences: 62578
Number of extensions: 228596
Number of successful extensions: 464
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)