BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030349
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52 OS=Candida glabrata
           (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
           NRRL Y-65) GN=RAD52 PE=3 SV=1
          Length = 505

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 12/82 (14%)

Query: 44  ISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTN--GGSGSASAPSEFVNHGFLLWN 101
           ISE +  ++T D DN AV+ Q     L   N IPDTN    +GSA AP+   N+      
Sbjct: 175 ISE-YSRSNTIDNDNPAVKRQ----KLNNQNSIPDTNKVKYNGSAPAPAITYNNAPKKPV 229

Query: 102 QTRQRWI-----GNKKAENRTH 118
           Q+ +R+      G + A+N++ 
Sbjct: 230 QSEERYAPNGSRGKENAQNKSE 251


>sp|P20469|ICEA_PANAN Ice nucleation protein InaA OS=Pantoea ananas GN=inaA PE=3 SV=1
          Length = 1322

 Score = 30.4 bits (67), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 25  ASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSG 84
            S+L+   G  G +    SI   + +TST   D+S +   GS  + G N+++    G + 
Sbjct: 573 GSDLTAGYGSTGTAGSDSSIIAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQ 632

Query: 85  SASAPSEF 92
           +A   S+ 
Sbjct: 633 TAEEGSDL 640


>sp|Q12192|RFM1_YEAST Repression factor of MSEs protein 1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=RFM1 PE=1 SV=1
          Length = 310

 Score = 29.6 bits (65), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 142 NATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEG 176
           + T   + GS  PFP PI   E +D   DI E++G
Sbjct: 159 DVTISEINGSELPFPIPISEVENIDIASDITERDG 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,699,100
Number of Sequences: 539616
Number of extensions: 2876190
Number of successful extensions: 6693
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6661
Number of HSP's gapped (non-prelim): 41
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)