Query 030349
Match_columns 179
No_of_seqs 83 out of 85
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 12:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13259 DUF4050: Protein of u 100.0 1.5E-38 3.3E-43 245.2 6.7 113 49-179 1-122 (122)
2 PF04818 CTD_bind: RNA polymer 33.3 34 0.00073 23.0 1.9 19 161-179 46-64 (64)
3 PLN00211 predicted protein; Pr 32.4 33 0.00071 24.9 1.7 14 160-173 28-41 (61)
4 COG5208 HAP5 CCAAT-binding fac 30.0 27 0.00059 31.4 1.2 15 158-172 171-185 (286)
5 PF09012 FeoC: FeoC like trans 29.5 46 0.001 22.8 2.1 16 162-177 28-43 (69)
6 PF07418 PCEMA1: Acidic phosph 28.9 21 0.00045 32.5 0.3 9 11-19 30-38 (282)
7 PRK10610 chemotaxis regulatory 25.1 75 0.0016 20.5 2.4 26 152-177 104-129 (129)
8 COG1709 Predicted transcriptio 24.7 55 0.0012 29.3 2.2 25 144-168 94-127 (241)
9 PF09791 Oxidored-like: Oxidor 24.7 31 0.00068 23.5 0.5 8 8-15 19-26 (48)
10 PRK07738 flagellar protein Fla 24.3 63 0.0014 25.7 2.2 24 155-178 89-112 (117)
11 TIGR03487 cas_csp2 CRISPR-asso 23.7 44 0.00095 31.8 1.4 15 155-169 178-192 (489)
12 PF10653 Phage-A118_gp45: Prot 23.6 38 0.00083 24.4 0.8 20 152-171 28-52 (62)
13 COG1533 SplB DNA repair photol 22.6 36 0.00078 30.3 0.6 75 93-173 100-180 (297)
No 1
>PF13259 DUF4050: Protein of unknown function (DUF4050)
Probab=100.00 E-value=1.5e-38 Score=245.22 Aligned_cols=113 Identities=54% Similarity=0.940 Sum_probs=97.0
Q ss_pred cccccccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHhhhcCCCCCC-------cccccc
Q 030349 49 WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAEN-------RTHQVR 121 (179)
Q Consensus 49 Wstst~~mdns~~~sq~sisS~s~~~~~~~~~~~~ss~~~~~eFVNhGl~~W~q~R~qWvg~~~s~~-------~~~~~r 121 (179)
||||+++|||+++|+|+++++. ++..+.+..... ...++|||||+++|+++|++|+|++++.. +....|
T Consensus 1 ~s~s~~~~d~~~~~~~~~~s~~---~~~~~~~~~~~~-~~~~~~~N~Gl~lW~~rR~~W~~~~~~~~~~~~~l~~~~~~r 76 (122)
T PF13259_consen 1 WSSSPFRFDNSDAQSQRSISST---NSSSDCSKRRKS-SEEEEFVNHGLILWEQRRQQWTGPKKSNKIIEPRLQQSNSIR 76 (122)
T ss_pred CCCCcccCcChhhhhhhccccc---cchhhhhhhhcc-ccCccceeHHHHHHHHHHHHHcCCCCcccccccccccccccc
Confidence 9999999999999999999554 444454443333 33499999999999999999999987653 455778
Q ss_pred C--CcccchhhhhhhhhhccccccchhcccCCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 030349 122 E--PKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 179 (179)
Q Consensus 122 e--P~ls~~~~~~~~~~w~~~wnaTye~LLgsnkpFpqPIPL~EMVDfLVDiWE~EGLyd 179 (179)
+ |.++ |++||++||++++||++||||+||||||||+||+||+||
T Consensus 77 ~~Ip~~~--------------y~~iY~~Lv~~~~pf~~PI~L~dmv~~Lv~gW~~eg~w~ 122 (122)
T PF13259_consen 77 ESIPPIS--------------YPAIYEKLVGSNKPFKQPIPLSDMVDFLVDGWEEEGLWP 122 (122)
T ss_pred cccchhh--------------HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence 8 8888 999999999999999999999999999999999999997
No 2
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=33.26 E-value=34 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.753 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhcCCCC
Q 030349 161 LSEMVDFLVDIWEQEGMYD 179 (179)
Q Consensus 161 L~EMVDfLVDiWE~EGLyd 179 (179)
.-+=|.=|++||++-+.|+
T Consensus 46 ~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 46 VRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHHHHHhhCCCCCC
Confidence 3445667899999999986
No 3
>PLN00211 predicted protein; Provisional
Probab=32.43 E-value=33 Score=24.87 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHh
Q 030349 160 PLSEMVDFLVDIWE 173 (179)
Q Consensus 160 PL~EMVDfLVDiWE 173 (179)
=||-|.-||.|||-
T Consensus 28 ylphMtsfLAeIwS 41 (61)
T PLN00211 28 YLPHMTSFLAEIWS 41 (61)
T ss_pred ccHHHHHHHHHHHH
Confidence 38999999999995
No 4
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=29.97 E-value=27 Score=31.41 Aligned_cols=15 Identities=53% Similarity=0.795 Sum_probs=12.1
Q ss_pred CCChHHHHHHHHHHH
Q 030349 158 PIPLSEMVDFLVDIW 172 (179)
Q Consensus 158 PIPL~EMVDfLVDiW 172 (179)
.|--+||.|||+||=
T Consensus 171 Av~kSeMfDFLidiv 185 (286)
T COG5208 171 AVKKSEMFDFLIDIV 185 (286)
T ss_pred HHHHHHHHhHHhhhc
Confidence 355689999999984
No 5
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.53 E-value=46 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhcCC
Q 030349 162 SEMVDFLVDIWEQEGM 177 (179)
Q Consensus 162 ~EMVDfLVDiWE~EGL 177 (179)
+++|+.+.+.|++.|.
T Consensus 28 ~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGY 43 (69)
T ss_dssp HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 6899999999999885
No 6
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=28.92 E-value=21 Score=32.50 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=7.7
Q ss_pred CcccCCCCC
Q 030349 11 GCLGCFIRP 19 (179)
Q Consensus 11 gC~Gc~~Kp 19 (179)
||||||.|-
T Consensus 30 gcF~f~rkK 38 (282)
T PF07418_consen 30 GCFGFCRKK 38 (282)
T ss_pred ceehhhccc
Confidence 999999854
No 7
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=25.11 E-value=75 Score=20.51 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCC
Q 030349 152 NKPFPQPIPLSEMVDFLVDIWEQEGM 177 (179)
Q Consensus 152 nkpFpqPIPL~EMVDfLVDiWE~EGL 177 (179)
..-+.+|+...++.+.|..+|+..|+
T Consensus 104 ~~~i~~p~~~~~l~~~l~~~~~~~~~ 129 (129)
T PRK10610 104 SGYVVKPFTAATLEEKLNKIFEKLGM 129 (129)
T ss_pred CeEEECCCCHHHHHHHHHHHHHHccC
Confidence 34567889999999999999998875
No 8
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=24.72 E-value=55 Score=29.26 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=19.7
Q ss_pred chhcccCCCCC---------CCCCCChHHHHHHH
Q 030349 144 TYESLLGSNKP---------FPQPIPLSEMVDFL 168 (179)
Q Consensus 144 Tye~LLgsnkp---------FpqPIPL~EMVDfL 168 (179)
.|+.+|+++.+ |+.||+|.|.++..
T Consensus 94 ~l~~~l~~~~~~~aildirEf~~pv~l~~~~~ai 127 (241)
T COG1709 94 ALARVLGSEFPSKAILDIREFDIPVTLEELVEAI 127 (241)
T ss_pred HHHHHhccCCchhheEehhhcCCCcCHHHHHHHh
Confidence 56777777654 99999999998753
No 9
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=24.66 E-value=31 Score=23.52 Aligned_cols=8 Identities=50% Similarity=1.124 Sum_probs=4.3
Q ss_pred cCCCcccC
Q 030349 8 QSSGCLGC 15 (179)
Q Consensus 8 ~~ggC~Gc 15 (179)
|++||..|
T Consensus 19 CgSGC~~C 26 (48)
T PF09791_consen 19 CGSGCAPC 26 (48)
T ss_pred cccCCccc
Confidence 45555554
No 10
>PRK07738 flagellar protein FlaG; Provisional
Probab=24.26 E-value=63 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCC
Q 030349 155 FPQPIPLSEMVDFLVDIWEQEGMY 178 (179)
Q Consensus 155 FpqPIPL~EMVDfLVDiWE~EGLy 178 (179)
-=+=||=.+|+|++..+||--||+
T Consensus 89 VIRQIPpEe~L~l~~~m~e~~GlL 112 (117)
T PRK07738 89 VIREIPPKKLLDMYAAMMEFVGLL 112 (117)
T ss_pred eeeeCCCHHHHHHHHHHHHHhcce
Confidence 335689999999999999999985
No 11
>TIGR03487 cas_csp2 CRISPR-associated protein, Csp2 family. Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pging (Porphyromonas gingivalis) subtype.
Probab=23.66 E-value=44 Score=31.80 Aligned_cols=15 Identities=47% Similarity=0.860 Sum_probs=12.0
Q ss_pred CCCCCChHHHHHHHH
Q 030349 155 FPQPIPLSEMVDFLV 169 (179)
Q Consensus 155 FpqPIPL~EMVDfLV 169 (179)
--.-||+.|||||+.
T Consensus 178 iipdipi~emvdfi~ 192 (489)
T TIGR03487 178 IIPDIPINEMVDFIA 192 (489)
T ss_pred EecCCcHHHHHHHHH
Confidence 345699999999974
No 12
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=23.56 E-value=38 Score=24.39 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=15.9
Q ss_pred CCCCCCCCChHH-----HHHHHHHH
Q 030349 152 NKPFPQPIPLSE-----MVDFLVDI 171 (179)
Q Consensus 152 nkpFpqPIPL~E-----MVDfLVDi 171 (179)
|..|.|.|||-| |.|.+-++
T Consensus 28 npaf~qkiplietgcekm~dyieel 52 (62)
T PF10653_consen 28 NPAFQQKIPLIETGCEKMTDYIEEL 52 (62)
T ss_pred CHHHHhccchhhhhhHHHHHHHHHH
Confidence 668999999976 77776554
No 13
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=22.62 E-value=36 Score=30.33 Aligned_cols=75 Identities=11% Similarity=-0.081 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhhhcCCCCCCccccccCCcccchhhhhhh--hh--hccccccch-h-cccCCCCCCCCCCChHHHHH
Q 030349 93 VNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNTHCLCLVK--KF--WLCSWNATY-E-SLLGSNKPFPQPIPLSEMVD 166 (179)
Q Consensus 93 VNhGl~~W~q~R~qWvg~~~s~~~~~~~reP~ls~~~~~~~~--~~--w~~~wnaTy-e-~LLgsnkpFpqPIPL~EMVD 166 (179)
..+++.+|-..-..|-+..- .=. .+-+-+-+|+|.|.+ .. =.+.++-|. | +|--.-+|+..+ +.+.++
T Consensus 100 ~~~~ltR~ilei~~~~~~~v-~I~---TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~aps--p~~Ri~ 173 (297)
T COG1533 100 KEYRLTRKILEILLKYGFPV-SIV---TKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPS--PEERLE 173 (297)
T ss_pred HHHHHHHHHHHHHHHcCCcE-EEE---ECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcC--HHHHHH
Confidence 35578888877778877632 111 223334478888872 22 234444332 3 354444565553 477777
Q ss_pred HHHHHHh
Q 030349 167 FLVDIWE 173 (179)
Q Consensus 167 fLVDiWE 173 (179)
.|..+=|
T Consensus 174 al~~l~e 180 (297)
T COG1533 174 ALKELSE 180 (297)
T ss_pred HHHHHHH
Confidence 7766543
Done!