Query 030349
Match_columns 179
No_of_seqs 83 out of 85
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g1p_A Conotoxin EVIA; three d 32.2 14 0.00048 22.8 0.8 13 5-17 18-30 (33)
2 2k53_A A3DK08 protein; NESG, C 21.0 26 0.00088 24.2 0.5 11 5-16 24-34 (76)
3 3d9j_A RNA-binding protein 16; 18.0 59 0.002 24.5 2.0 20 160-179 105-124 (145)
4 2km4_A Regulator of TY1 transp 17.0 58 0.002 24.3 1.7 18 162-179 103-120 (142)
5 2auv_A Potential NAD-reducing 15.6 57 0.0019 21.9 1.3 17 9-26 50-66 (85)
6 3h4c_A Transcription factor TF 15.3 52 0.0018 28.3 1.2 13 153-165 70-82 (260)
7 4fu3_A Regulation of nuclear P 13.4 94 0.0032 22.3 2.0 16 164-179 103-118 (135)
8 1ytv_M V1AR, vasopressin V1A r 13.2 1.3E+02 0.0043 22.1 2.6 15 8-22 24-38 (84)
9 2hc5_A ORF 99, hypothetical pr 12.9 53 0.0018 24.6 0.5 21 157-177 83-103 (117)
10 2afd_A Protein ASL1650; twiste 11.7 2.5E+02 0.0085 17.6 3.5 23 152-174 3-25 (88)
No 1
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=32.24 E-value=14 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.4
Q ss_pred chhcCCCcccCCC
Q 030349 5 HLQQSSGCLGCFI 17 (179)
Q Consensus 5 ~~~~~ggC~Gc~~ 17 (179)
.|.|+|.|+|-|+
T Consensus 18 glccsgacvgvca 30 (33)
T 1g1p_A 18 GLCCSGACVGVCA 30 (33)
T ss_dssp CCBTTBCBSSBBC
T ss_pred CcccCCceeEEee
Confidence 3578899999885
No 2
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=21.03 E-value=26 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=8.5
Q ss_pred chhcCCCcccCC
Q 030349 5 HLQQSSGCLGCF 16 (179)
Q Consensus 5 ~~~~~ggC~Gc~ 16 (179)
.-|||. |+||-
T Consensus 24 ~~~G~~-C~gC~ 34 (76)
T 2k53_A 24 INNGMH-CLGCP 34 (76)
T ss_dssp HHTTCC-CCSSC
T ss_pred HHcCCC-CCCCC
Confidence 448888 99985
No 3
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=17.98 E-value=59 Score=24.52 Aligned_cols=20 Identities=5% Similarity=0.429 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHhhcCCCC
Q 030349 160 PLSEMVDFLVDIWEQEGMYD 179 (179)
Q Consensus 160 PL~EMVDfLVDiWE~EGLyd 179 (179)
..-.-+.=|++|||+-++|+
T Consensus 105 ~~r~kl~rLl~iW~~r~vF~ 124 (145)
T 3d9j_A 105 DDKSKIVRVLNLWQKNNVFK 124 (145)
T ss_dssp GGHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 55677788999999999884
No 4
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=16.98 E-value=58 Score=24.29 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 030349 162 SEMVDFLVDIWEQEGMYD 179 (179)
Q Consensus 162 ~EMVDfLVDiWE~EGLyd 179 (179)
-.-|.=|++|||+-+.|+
T Consensus 103 ~~kv~rvl~iWeer~vf~ 120 (142)
T 2km4_A 103 KKKLSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhhccCCcC
Confidence 344666789999999986
No 5
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=15.62 E-value=57 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=12.0
Q ss_pred CCCcccCCCCCCcccccC
Q 030349 9 SSGCLGCFIRPPVNTSAS 26 (179)
Q Consensus 9 ~ggC~Gc~~Kp~~i~~vd 26 (179)
-.||+|.|...| +..|+
T Consensus 50 ~~~ClG~C~~~P-~v~V~ 66 (85)
T 2auv_A 50 TLRCVGGCALAP-IVMVG 66 (85)
T ss_dssp SSSSSSSCTTSC-CCEEG
T ss_pred ECCccCcCCCCC-EEEEC
Confidence 348999998776 44455
No 6
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=15.25 E-value=52 Score=28.31 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=10.5
Q ss_pred CCCCCCCChHHHH
Q 030349 153 KPFPQPIPLSEMV 165 (179)
Q Consensus 153 kpFpqPIPL~EMV 165 (179)
+.-.+||||+||-
T Consensus 70 e~~~~PiplaE~r 82 (260)
T 3h4c_A 70 EEAQQPLPLAEVR 82 (260)
T ss_dssp HHTTCCCCHHHHH
T ss_pred HHcCCCccHHHHH
Confidence 4567999999993
No 7
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=13.44 E-value=94 Score=22.31 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcCCCC
Q 030349 164 MVDFLVDIWEQEGMYD 179 (179)
Q Consensus 164 MVDfLVDiWE~EGLyd 179 (179)
-|.=|++||++-+.|+
T Consensus 103 kl~kll~iW~~r~vf~ 118 (135)
T 4fu3_A 103 PLERLLNIWQERSVYG 118 (135)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhcCCCCcC
Confidence 3455889999999985
No 8
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=13.20 E-value=1.3e+02 Score=22.05 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=10.9
Q ss_pred cCCCcccCCCCCCcc
Q 030349 8 QSSGCLGCFIRPPVN 22 (179)
Q Consensus 8 ~~ggC~Gc~~Kp~~i 22 (179)
-.-.||-||.|+.+-
T Consensus 24 ~~lr~fpCC~~~k~~ 38 (84)
T 1ytv_M 24 QGQGSFPCCQNMKEK 38 (84)
T ss_pred hhhhccccccCcccc
Confidence 345899999987543
No 9
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=12.93 E-value=53 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 030349 157 QPIPLSEMVDFLVDIWEQEGM 177 (179)
Q Consensus 157 qPIPL~EMVDfLVDiWE~EGL 177 (179)
+=||-.||+|+...++|.-||
T Consensus 83 RqIPpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 83 REIPPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHhhce
Confidence 458999999999999998886
No 10
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=11.71 E-value=2.5e+02 Score=17.60 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=17.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHhh
Q 030349 152 NKPFPQPIPLSEMVDFLVDIWEQ 174 (179)
Q Consensus 152 nkpFpqPIPL~EMVDfLVDiWE~ 174 (179)
.....++.|..++.+.|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~ 25 (88)
T 2afd_A 3 HMKTIQPASVEDIQSWLIDQFAQ 25 (88)
T ss_dssp CCSCCCCSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHH
Confidence 33445677899999999999975
Done!