Query 030349
Match_columns 179
No_of_seqs 83 out of 85
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 20:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030349.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030349hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g1pa_ g.3.6.1 (A:) Conotoxin 33.2 6.3 0.00046 22.7 0.8 13 5-17 18-30 (32)
2 d2p5zx2 b.106.1.1 (X:15-201) H 25.8 9.9 0.00072 27.6 1.0 14 165-178 156-169 (187)
3 d2idba2 d.333.1.1 (A:326-491) 19.9 20 0.0015 26.1 1.7 26 153-178 140-166 (166)
4 d1uv7a_ d.67.4.1 (A:) General 14.2 58 0.0043 21.1 2.7 21 157-177 33-53 (80)
5 d1ug7a_ a.24.24.1 (A:) Domain 13.8 32 0.0024 25.1 1.4 19 144-162 104-125 (128)
6 d1wiga1 g.39.1.3 (A:1-32) Acti 13.1 30 0.0022 19.9 0.8 9 7-15 3-11 (32)
7 d1t56a2 a.121.1.1 (A:95-214) E 12.4 62 0.0045 21.8 2.6 68 97-174 41-115 (120)
8 d1eh9a2 b.71.1.1 (A:491-557) G 11.8 29 0.0021 22.9 0.6 14 147-160 40-53 (67)
9 d2v4ja2 d.58.36.2 (A:2-167) Di 9.6 63 0.0046 24.3 1.9 16 161-176 110-125 (166)
10 d1yixa1 c.1.9.12 (A:1-265) Put 9.5 1E+02 0.0075 22.6 3.1 26 148-173 201-236 (265)
No 1
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=33.16 E-value=6.3 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.3
Q ss_pred chhcCCCcccCCC
Q 030349 5 HLQQSSGCLGCFI 17 (179)
Q Consensus 5 ~~~~~ggC~Gc~~ 17 (179)
.|.|+|.|+|-|+
T Consensus 18 glccsgacvgvca 30 (32)
T d1g1pa_ 18 GLCCSGACVGVCA 30 (32)
T ss_dssp CCBTTBCBSSBBC
T ss_pred CccccCceeEEec
Confidence 3578899999875
No 2
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=25.75 E-value=9.9 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.9
Q ss_pred HHHHHHHHhhcCCC
Q 030349 165 VDFLVDIWEQEGMY 178 (179)
Q Consensus 165 VDfLVDiWE~EGLy 178 (179)
-|||..++|+||+|
T Consensus 156 ~~Fl~RL~ee~Gi~ 169 (187)
T d2p5zx2 156 LTFVSRLLSEVGIW 169 (187)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCE
Confidence 48999999999987
No 3
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=19.88 E-value=20 Score=26.13 Aligned_cols=26 Identities=19% Similarity=0.639 Sum_probs=21.4
Q ss_pred CCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 030349 153 KPFPQPIPL-SEMVDFLVDIWEQEGMY 178 (179)
Q Consensus 153 kpFpqPIPL-~EMVDfLVDiWE~EGLy 178 (179)
+.||+++.. +|+.+-..+.|++=|||
T Consensus 140 ~~~p~~~~~~~e~~~~v~~~W~elGl~ 166 (166)
T d2idba2 140 REWGRPIKKDPDVVAHIDAIWDELAIF 166 (166)
T ss_dssp SCCCEECCCCHHHHHHHHHHTTTSCCC
T ss_pred ccCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 467777654 58999999999999997
No 4
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=14.15 E-value=58 Score=21.06 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 030349 157 QPIPLSEMVDFLVDIWEQEGM 177 (179)
Q Consensus 157 qPIPL~EMVDfLVDiWE~EGL 177 (179)
.++|..+++..|.++-++.|+
T Consensus 33 d~v~F~~ll~WL~~L~~~~Gi 53 (80)
T d1uv7a_ 33 QPLPFSQLVSWIAYLQERQGV 53 (80)
T ss_dssp CCBCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHhcCCe
Confidence 468999999999999999986
No 5
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.76 E-value=32 Score=25.10 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=14.1
Q ss_pred chhcccCCCCCCC---CCCChH
Q 030349 144 TYESLLGSNKPFP---QPIPLS 162 (179)
Q Consensus 144 Tye~LLgsnkpFp---qPIPL~ 162 (179)
+...||..|++|| +||||.
T Consensus 104 iLknll~~~keFP~~v~~~~~~ 125 (128)
T d1ug7a_ 104 ILKNILTYNKEFPFDVQPISGP 125 (128)
T ss_dssp HHHTTTTCCSCCSSCCCCSSCC
T ss_pred HHHHHhhcCCCCCcccccCCcc
Confidence 3456788999998 677764
No 6
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.08 E-value=30 Score=19.89 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=6.8
Q ss_pred hcCCCcccC
Q 030349 7 QQSSGCLGC 15 (179)
Q Consensus 7 ~~~ggC~Gc 15 (179)
-|++||-+|
T Consensus 3 sgssgC~~C 11 (32)
T d1wiga1 3 SGSSGCDSC 11 (32)
T ss_dssp CSCCSCSSS
T ss_pred Cccchhhhh
Confidence 367888886
No 7
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.41 E-value=62 Score=21.84 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhcCCCCCCcc---ccccCCcccc----hhhhhhhhhhccccccchhcccCCCCCCCCCCChHHHHHHHH
Q 030349 97 FLLWNQTRQRWIGNKKAENRT---HQVREPKLNT----HCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLV 169 (179)
Q Consensus 97 l~~W~q~R~qWvg~~~s~~~~---~~~reP~ls~----~~~~~~~~~w~~~wnaTye~LLgsnkpFpqPIPL~EMVDfLV 169 (179)
-.+|++.|+.|+......=+. +-.-.|.+.. +..+.-.+.. -|..+.+ ++ ..++..+.||-|.
T Consensus 41 ~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~~~~A~AL~~M~er~------~~~~~~~-~~---~~~d~e~~v~tL~ 110 (120)
T d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERT------LFASFAG-EQ---PSVPEARVLDTLV 110 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHHHH------HHHHHHT-CS---SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH------HHHHHcc-CC---CCCCHHHHHHHHH
Confidence 468999999999864211010 0011234442 2222222211 2333332 22 2378999999999
Q ss_pred HHHhh
Q 030349 170 DIWEQ 174 (179)
Q Consensus 170 DiWE~ 174 (179)
.||-.
T Consensus 111 ~iW~~ 115 (120)
T d1t56a2 111 HIWVT 115 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99953
No 8
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=11.80 E-value=29 Score=22.88 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=11.2
Q ss_pred cccCCCCCCCCCCC
Q 030349 147 SLLGSNKPFPQPIP 160 (179)
Q Consensus 147 ~LLgsnkpFpqPIP 160 (179)
=||++|..||+.|-
T Consensus 40 LvlsSn~sFP~~I~ 53 (67)
T d1eh9a2 40 LLLSSNNSFPQHIE 53 (67)
T ss_dssp CCEESSSCSCSBCC
T ss_pred EEEecCCcCchhhh
Confidence 46788889999884
No 9
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=9.56 E-value=63 Score=24.31 Aligned_cols=16 Identities=31% Similarity=0.738 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhcC
Q 030349 161 LSEMVDFLVDIWEQEG 176 (179)
Q Consensus 161 L~EMVDfLVDiWE~EG 176 (179)
-.+....|.||||.-|
T Consensus 110 tT~~LR~LcDiWek~G 125 (166)
T d2v4ja2 110 SADYLRQLCDIWDLRG 125 (166)
T ss_dssp EHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhhhc
Confidence 4689999999999866
No 10
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}
Probab=9.47 E-value=1e+02 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.636 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCC----------hHHHHHHHHHHHh
Q 030349 148 LLGSNKPFPQPIP----------LSEMVDFLVDIWE 173 (179)
Q Consensus 148 LLgsnkpFpqPIP----------L~EMVDfLVDiWE 173 (179)
||.|--||-.|.| ++++++.|.+|+.
T Consensus 201 LlETD~P~~~p~~~~~~~n~P~~i~~~~~~iA~i~~ 236 (265)
T d1yixa1 201 LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKG 236 (265)
T ss_dssp EECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHHHT
T ss_pred EeecCCcccCccccCCCCCCcHHHHHHHHHHHHHHC
Confidence 4577779988877 7788888888875
Done!