BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030350
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL-------LTYLQ 150
C+VCLN E+D+ +R + CCHVFH CID W+ H TCPLCRA L + +Q
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL--RSHTTCPLCRADLIPVPGESIVSIQ 201
Query: 151 SKSL-NNWPKNEPNWAVERIL 170
L N+ P ++PN R L
Sbjct: 202 IPGLVNDPPGSDPNGDRIRSL 222
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 20 AVVIALLRWVLFCIIRFRNRNSYSPSSSSSSQQQQQQQQQQQQPSSSTCSISSQMIKERL 79
A++ A + +F ++ R + +P + Q +S + + E
Sbjct: 53 ALITAFVLLTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAAAASRASRGLDKEVVEAF 112
Query: 80 VLASFGDIKVRMPW--VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKT 137
A +GD+K RM P CAVCL + D +R L CCHVFH +CID W+ T
Sbjct: 113 PTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAA--VT 170
Query: 138 CPLCRAPL 145
CPLCRA L
Sbjct: 171 CPLCRANL 178
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSK 152
C +CL E D R+LRNC H FH ECID W+ H TCPLCR+P+L + +
Sbjct: 138 CVICLGLWEAGDFGRKLRNCGHGFHVECIDMWL--SSHSTCPLCRSPVLAAVSDE 190
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL----QSKS 153
C+VCLN EED+ +R L C H FH CID W+ HK CPLCRAP+L Q
Sbjct: 135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLS--HKNCPLCRAPVLLITEPPHQETE 192
Query: 154 LNNWPKNE 161
N+ P +E
Sbjct: 193 TNHQPDSE 200
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 69 SISSQMIKERLVLASFGDIKVRMPWVP-DTCAVCLNHMEEDDLVRELRNCCHVFHRECID 127
S S+ + E + + F D +P P D C VCL+ E DD VR+L C HVFH C+D
Sbjct: 60 STSASLANELIPVVRFSD----LPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 115
Query: 128 RW-VDYDHHKTCPLCR---APLLTYLQS--KSLNNWPKNE 161
RW VDY+ K CP+CR P Y QS S ++W +E
Sbjct: 116 RWIVDYNKMK-CPVCRHRFLPKEKYTQSDWGSGSDWFSDE 154
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 6 DDPTLITSQFLYRAAVVIALLRWVLFCIIRFRNRNSYSPSSSSSSQQQQQQQQQQQQPSS 65
+DP ++ L+ V+ ++ +FC R+ +S SS S + Q +
Sbjct: 48 NDPVVVVITVLF--LVIFFMVFGSIFC---RRSNAQFSRSSIFRSTDADAESQVVRIRRL 102
Query: 66 STCSISSQMIKERLVLASFGDIK-VRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRE 124
+ + ++ I E + ++K VR+ CAVCL E+D+ +R + CCHVFH +
Sbjct: 103 TARGLDAEAI-ETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHAD 161
Query: 125 CIDRWVDYDHHKTCPLCRAPLL 146
C+D W+ H TCPLCRA L+
Sbjct: 162 CVDVWL--SEHSTCPLCRADLV 181
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNW 157
CA+CLN E+D+ +R L C HVFH CID W++ H TCP+CRA L +
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEA--HVTCPVCRANLAEQVAEGESVEP 185
Query: 158 PKNEPNWAVERIL 170
EP+ +++++
Sbjct: 186 GGTEPDLELQQVV 198
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 1 MGFFEDDPTLITSQFLYRAAVVIALLRWVLFCIIRFRNRNSYSPSSSSSSQQQQQQQQQQ 60
MG D L ++ + VI R ++ + + S+ + +
Sbjct: 1 MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSF----------LDHNETSR 50
Query: 61 QQPSSSTCSISSQMIKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHV 120
P+ S S+ + E + + F D+ + D C VCL+ DD +R+L C HV
Sbjct: 51 SDPTRLALSTSATLANELIPVVRFSDL---LTDPEDCCTVCLSDFVSDDKIRQLPKCGHV 107
Query: 121 FHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLN----NWPKNE 161
FH C+DRW+ + TCP+CR L +S + +W ++E
Sbjct: 108 FHHRCLDRWIVDCNKITCPICRNRFLPEEKSTPFDWGTSDWFRDE 152
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146
C VCLN E+D+ +R + CCHVFH CID W+ TCPLCRA L+
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWL--RSQTTCPLCRANLV 164
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 15 FLYRAAVVIALLRWVLFCIIRF---RNRNSYSPSSSSSSQQQQ-----QQQQQQQQPSSS 66
F+ VI + +L ++R+ + R++ S S + S+Q + Q+Q QQ
Sbjct: 55 FIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHL 114
Query: 67 TCSISSQMIKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECI 126
S Q + + L + + +IK P CAVCL EDD +R L NC H FH +CI
Sbjct: 115 HDSGLDQALIDALPVFLYKEIKGTKE--PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172
Query: 127 DRWVDYDHHKTCPLCRAPLLT 147
D W+ + TCPLCR L +
Sbjct: 173 DTWLLSN--STCPLCRGTLFS 191
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRA 143
P CAVCL+ EE + R L NC H FH +CID W + H TCPLCR+
Sbjct: 116 PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMW--FHSHSTCPLCRS 162
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
+ C+VCL+ EEDD R L C HVFH +CID W + +CPLCRAP+
Sbjct: 111 EECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTW--FRSRSSCPLCRAPV 158
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL---------LTY 148
C+VCLN +ED+ +R + NCCHVFH +CID W+ + CPLCR + L
Sbjct: 134 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWL--QGNANCPLCRTSVSCEASFTLDLIS 191
Query: 149 LQSKSLNNWPKNEPNWAVERILYIFGDD 176
S N P + N +E L + GDD
Sbjct: 192 APSSPRENSPHSR-NRNLEPGLVLGGDD 218
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146
CAVCL EE D VR L C H FH ECID W+ H CPLCR +L
Sbjct: 156 CAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWL--RSHPNCPLCRTAIL 202
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147
CAVCL+ E +D +R L CCH FH +CID W+ + +TCPLCR+PL
Sbjct: 117 CAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSN--QTCPLCRSPLFA 164
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 89 VRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148
V + P C VCL E +D +R L C H FH ECID W+ H TCPLCR+ LL+
Sbjct: 117 VGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLS--HSTCPLCRSNLLSG 174
Query: 149 LQS 151
S
Sbjct: 175 FSS 177
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
C+VCL+ EE+D R L C H FH +CID W + TCPLCRAP+
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTW--FRSRSTCPLCRAPV 153
>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3
SV=1
Length = 289
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
CA+CL + D ++R L C HVFH+ECID W ++ H+TCP+CR L
Sbjct: 110 CAICLLEFDGDHVLRLLTTCYHVFHQECIDLW--FESHRTCPVCRRDL 155
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
C VCLN EED+ +R L C H FH CID W+ H CPLCRA +
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWL--SSHTNCPLCRAGI 222
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQ--SKSLN 155
C++CL+ + + D R L C H FH ECID W + H TCP+CR +L Q SK +
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMW--FQSHSTCPICRNTVLGPEQASSKRVE 184
Query: 156 NWPKNEPNWAV 166
P N N
Sbjct: 185 QVPDNAENAGT 195
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 20 AVVIALLRWVLF-----CIIRFRNRNSYSPSSSSSSQQQQQQQQQQQQPSSSTCSISSQM 74
AV+IA+L + L C + ++ N+ +SS +++ + + +S
Sbjct: 47 AVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVIN 106
Query: 75 IKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH 134
+ + +K+ V CA+CLN E+++ +R + C H FH CID W+
Sbjct: 107 SFPSFLYSQVKGLKIGKGGV--ECAICLNEFEDEETLRLMPPCSHAFHASCIDVWL--SS 162
Query: 135 HKTCPLCRAPL 145
TCP+CRA L
Sbjct: 163 RSTCPVCRASL 173
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
CA+CLN E+D+ +R L C HVFH CI W+ H TCP+CR L
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWL--QGHVTCPVCRTNL 169
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 20 AVVIALLRWVLFCIIRFRNRNS---------YSPSSSSSSQQQQQQQQQQQQPSSSTCSI 70
A++I L VL+ I +F ++S Y+P S S Q Q +I
Sbjct: 128 ALIIVFL-GVLYLIFKFLRKSSTLFPIPHFNYNPDLFSFSSPQLQHLFFLHDSGLDQTAI 186
Query: 71 SSQMIKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWV 130
+ L + +G++ + + P CAVCLN + D +R L C H FH CID W+
Sbjct: 187 ------DALPVFLYGNVTISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL 239
Query: 131 DYDHHKTCPLCRAPLLT 147
+ TCPLCR L T
Sbjct: 240 LSN--STCPLCRRSLST 254
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
C VCL++ E +D R L+ C H FHRECID+W+ +CPLCR
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWL-TSSQNSCPLCR 568
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146
C VCLN ++D+ +R + C HVFH +C+D W+ H TCP+CRA ++
Sbjct: 85 CVVCLNEFKDDETLRLVPPCVHVFHADCVDIWL--SHSSTCPICRAKVV 131
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
CAVCL +E+ + R L C H FH EC+D W+ H TCPLCR
Sbjct: 134 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCR 176
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D+CAVC+ + +DLVR L C HVFH+ C+D W+ H+TCP+C+ +L L
Sbjct: 278 DSCAVCIELYKPNDLVRIL-TCNHVFHKTCVDPWL--LEHRTCPMCKCDILKAL 328
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
CAVCL E +++R L C H FH EC+D W+D H TCPLCR
Sbjct: 146 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDA--HSTCPLCR 188
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146
C++CL ED+ +R L C H FH CIDRW+ H CPLCRA ++
Sbjct: 155 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWL--KSHSNCPLCRAKII 201
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D+CAVC+ + +DLVR L C H+FH+ C+D W+ H+TCP+C+ +L L
Sbjct: 275 DSCAVCIELYKPNDLVRIL-TCNHIFHKTCVDPWL--LEHRTCPMCKCDILKAL 325
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
D C++CL +DD +R + C H FH CID W ++ HKTCP+CR L
Sbjct: 152 DQCSICLTEFMDDDTIRLISTCNHSFHTICIDLW--FEGHKTCPVCRREL 199
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
CA+CLN +E+ + VR L C H+FH +CID W+ Y H TCP+CR+ L
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWL-YS-HATCPVCRSNL 169
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D+CAVC+ + +DLVR L C H+FH+ C+D W+ H+TCP+C+ +L L
Sbjct: 275 DSCAVCIELYKPNDLVRIL-TCNHIFHKTCVDPWL--LEHRTCPMCKCDILKAL 325
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D+CAVC+ + +DLVR L C H+FH+ C+D W+ H+TCP+C+ +L L
Sbjct: 275 DSCAVCIELYKPNDLVRIL-TCNHIFHKTCVDPWL--LEHRTCPMCKCDILKAL 325
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 54 QQQQQQQQQPSSSTCSISSQ-MIKERLVLASFGDIK-VRMPWVPDTCAVCLNHMEEDD-L 110
+ Q Q QQ+P + + I + L F +K +R CA+CL EE+ L
Sbjct: 68 ENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHIL 127
Query: 111 VRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
+R L C HVFH+ECID+W++ + KTCP+CR
Sbjct: 128 LRLLTTCYHVFHQECIDQWLESN--KTCPVCR 157
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSL 154
P CAVCL E D +R L C H FH CID W+ + TCPLCR L +
Sbjct: 140 PFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWL--QSNSTCPLCRGTLFS------- 190
Query: 155 NNWPKNEPNWAVERILYIFGD 175
P +++E ++ F D
Sbjct: 191 -------PGFSMENPMFDFDD 204
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 15 FLYRAAVVIALLRWVLFCIIRFRNRNSYSPSSSSSSQQQQQQQQQQQQPSSSTCSISSQM 74
LY V+ +LL L R P+ S+ Q Q + Q Q + I
Sbjct: 99 LLYLIDVIASLLSGRLV-------RERIGPAMLSAVQSQMGAVESQFQDHTD---IFDTA 148
Query: 75 IKERLVLASFGDIKVRMPWVPDT--------CAVCLNHMEEDDLVRELRNCCHVFHRECI 126
I + L GD R+P V T C+VCL + + VR L +C H+FH CI
Sbjct: 149 ISKGLT----GDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCI 204
Query: 127 DRWVDYDHHKTCPLCR 142
D+W+ H +CPLCR
Sbjct: 205 DKWL--RRHASCPLCR 218
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 77 ERLVLASFGD--IKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH 134
+ LV+AS + ++ CAVCL+ +EE D R L NC HVFH C+D W+
Sbjct: 77 DSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTT-- 134
Query: 135 HKTCPLCRA 143
TCP+CR
Sbjct: 135 QSTCPVCRT 143
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 88 KVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR-APLL 146
+ + P CA+CL + L+R+L +C H+FH +CID W+ + TCP+CR +PL
Sbjct: 137 EAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLN--PTCPVCRTSPLP 194
Query: 147 TYLQS 151
T L +
Sbjct: 195 TPLST 199
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145
CA+CL+ ++D VR + C H FH CID W ++ HKTCP+CR L
Sbjct: 103 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLW--FELHKTCPVCRCEL 148
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147
C+VCL+ +E++ +R L C H FH CID W+ H CPLCRA ++T
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL--KSHSNCPLCRAFIVT 206
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
P CAVCL E +D +R L C H FH +CID W+ H TCPLCR
Sbjct: 131 PFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLS--HSTCPLCR 176
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRA 143
C+VCL+ EE++ +R L C H FH CID W+ H CPLCRA
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWL--KSHSNCPLCRA 185
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLN 155
+ CAVC+ + + DLVR L C H+FHR CID W+ H+TCP+C+ ++ K+L
Sbjct: 262 ENCAVCIENYKTKDLVRILP-CKHIFHRLCIDPWL--IEHRTCPMCKLDVI-----KALG 313
Query: 156 NWPKNEPNWAVERILYIFGDDLVV 179
W + E + I G L +
Sbjct: 314 FWVEPEETLDIHVPDSIAGSSLSI 337
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D+C +C H + +D+VR L C H FH+ CID W+ H TCP+C+ +L L
Sbjct: 254 DSCVICFEHYKPNDIVRIL-TCKHFFHKNCIDPWI--LSHGTCPICKCDILKVL 304
>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2
SV=1
Length = 302
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 84 FGDIKVRMPWVPDT-CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
+ ++K R + CAVC+ E+ + +R + CCHVFH +C+ W+ H TCPLCR
Sbjct: 81 YSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWL--SDHSTCPLCR 138
Query: 143 APL 145
L
Sbjct: 139 VDL 141
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 98 CAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCR 142
CAVCL+ ++E D REL NC H+FH +C+D W+ TCP+CR
Sbjct: 108 CAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTT--CSTCPVCR 150
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 15 FLYRAAVVIALLRWVLFCIIRFRNRNSYSPSSSSSSQQQQQQ------QQQQQQPSSSTC 68
FLY V+++LL L R P+ S+ Q Q + +
Sbjct: 114 FLYLIDVIVSLLSGRLV-------RERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSK 166
Query: 69 SISSQMIKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDR 128
++ ++++ + G+ D+C+VCL + + VR L +C H+FH CID
Sbjct: 167 GLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDN 226
Query: 129 WVDYDHHKTCPLCR 142
W+ H +CP+CR
Sbjct: 227 WL--LRHGSCPMCR 238
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149
D CAVC+ +++D+VR L C HVFH+ C+D W+ H TCP+C+ +L L
Sbjct: 262 DHCAVCIESYKQNDVVRVL-PCKHVFHKSCVDPWL--SEHCTCPMCKLNILKAL 312
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147
D+C +CL D+ R+L+ C H FH+ CID+W+ + +CPLCRA +T
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTG-NNSCPLCRAHGVT 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,758,153
Number of Sequences: 539616
Number of extensions: 2507980
Number of successful extensions: 59536
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 405
Number of HSP's that attempted gapping in prelim test: 33977
Number of HSP's gapped (non-prelim): 18575
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)