Query 030350
Match_columns 179
No_of_seqs 191 out of 1705
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 20:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.2E-17 1.4E-21 108.8 6.8 79 65-147 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.7E-16 9.2E-21 101.0 4.0 65 78-147 8-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 4E-16 1.4E-20 94.1 3.5 51 94-146 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.4E-15 4.9E-20 96.0 5.8 54 93-149 12-65 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.9E-15 6.5E-20 96.7 5.1 53 93-148 13-65 (74)
6 2ect_A Ring finger protein 126 99.6 2E-15 7E-20 97.5 4.9 53 93-148 13-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 2E-15 6.7E-20 98.5 4.0 52 94-147 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 5.8E-15 2E-19 88.9 4.1 51 94-146 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1.2E-14 3.9E-19 100.6 5.2 59 94-152 24-99 (114)
10 1t1h_A Gspef-atpub14, armadill 99.5 9.5E-15 3.3E-19 94.3 3.7 65 94-173 7-71 (78)
11 3ng2_A RNF4, snurf, ring finge 99.5 1.5E-14 5E-19 91.6 4.2 52 93-147 8-63 (71)
12 3ztg_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 94.6 5.9 69 93-174 11-80 (92)
13 3dpl_R Ring-box protein 1; ubi 99.5 1E-14 3.5E-19 99.7 3.1 68 77-146 18-100 (106)
14 2y43_A E3 ubiquitin-protein li 99.5 1.7E-14 5.7E-19 97.4 3.6 65 94-173 21-85 (99)
15 2ea6_A Ring finger protein 4; 99.5 3.2E-14 1.1E-18 89.5 4.0 53 93-147 13-68 (69)
16 3fl2_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 97.1 5.8 70 94-177 51-120 (124)
17 2d8s_A Cellular modulator of i 99.4 1.2E-13 4E-18 89.7 5.1 54 93-148 13-71 (80)
18 2xeu_A Ring finger protein 4; 99.4 6.5E-14 2.2E-18 86.7 3.5 51 94-147 2-56 (64)
19 2ckl_A Polycomb group ring fin 99.4 8.8E-14 3E-18 95.3 4.3 72 94-176 14-85 (108)
20 2csy_A Zinc finger protein 183 99.4 1.7E-13 5.8E-18 89.1 5.4 49 93-147 13-61 (81)
21 1chc_A Equine herpes virus-1 r 99.4 9.8E-14 3.3E-18 87.1 4.0 51 94-149 4-54 (68)
22 2djb_A Polycomb group ring fin 99.4 1.8E-13 6.1E-18 87.0 5.0 49 94-147 14-62 (72)
23 3lrq_A E3 ubiquitin-protein li 99.4 5.8E-14 2E-18 95.0 2.6 64 94-171 21-84 (100)
24 4a0k_B E3 ubiquitin-protein li 99.4 1.4E-14 4.9E-19 100.4 -1.0 68 77-146 29-111 (117)
25 1g25_A CDK-activating kinase a 99.4 2E-13 6.7E-18 85.1 4.1 52 95-147 3-55 (65)
26 2d8t_A Dactylidin, ring finger 99.4 1.2E-13 4E-18 87.7 3.0 50 93-148 13-62 (71)
27 1z6u_A NP95-like ring finger p 99.4 3.1E-13 1.1E-17 97.9 5.7 70 94-177 77-146 (150)
28 2kr4_A Ubiquitin conjugation f 99.4 3.2E-13 1.1E-17 88.8 5.2 64 94-173 13-76 (85)
29 4ayc_A E3 ubiquitin-protein li 99.4 6.3E-14 2.1E-18 100.2 0.8 47 95-147 53-99 (138)
30 2kre_A Ubiquitin conjugation f 99.4 6.2E-13 2.1E-17 89.9 5.3 64 94-173 28-91 (100)
31 2ct2_A Tripartite motif protei 99.4 6.6E-13 2.2E-17 87.3 5.3 54 93-147 13-68 (88)
32 2yur_A Retinoblastoma-binding 99.4 4E-13 1.4E-17 85.9 4.1 50 94-147 14-64 (74)
33 1wgm_A Ubiquitin conjugation f 99.4 5.3E-13 1.8E-17 90.0 4.8 64 94-173 21-85 (98)
34 2egp_A Tripartite motif-contai 99.3 3.1E-14 1.1E-18 91.9 -1.9 51 93-147 10-65 (79)
35 2ecy_A TNF receptor-associated 99.3 8.6E-13 2.9E-17 82.4 4.8 50 93-147 13-62 (66)
36 2ecw_A Tripartite motif-contai 99.3 1.2E-13 4E-18 90.2 0.8 50 94-147 18-71 (85)
37 2ckl_B Ubiquitin ligase protei 99.3 3.5E-13 1.2E-17 99.0 3.2 68 94-174 53-120 (165)
38 2ecv_A Tripartite motif-contai 99.3 1.7E-13 5.8E-18 89.4 1.3 50 94-147 18-71 (85)
39 2ecn_A Ring finger protein 141 99.3 2.4E-13 8.4E-18 85.8 1.9 48 94-148 14-61 (70)
40 2ct0_A Non-SMC element 1 homol 99.3 1E-12 3.5E-17 83.8 4.6 52 93-147 13-64 (74)
41 1jm7_A BRCA1, breast cancer ty 99.3 5.4E-13 1.8E-17 91.7 2.6 49 95-147 21-70 (112)
42 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.8E-17 82.8 3.9 51 93-147 18-69 (73)
43 3hct_A TNF receptor-associated 99.3 2.5E-12 8.6E-17 89.4 4.0 64 93-171 16-79 (118)
44 1jm7_B BARD1, BRCA1-associated 99.3 2E-12 6.7E-17 89.8 3.2 63 94-173 21-83 (117)
45 4ap4_A E3 ubiquitin ligase RNF 99.2 3.9E-12 1.3E-16 89.5 3.7 52 94-148 6-61 (133)
46 2ysj_A Tripartite motif-contai 99.2 7.9E-12 2.7E-16 77.2 4.4 45 93-141 18-63 (63)
47 3l11_A E3 ubiquitin-protein li 99.2 2E-12 7E-17 89.4 1.8 73 94-174 14-86 (115)
48 2yu4_A E3 SUMO-protein ligase 99.2 8.9E-12 3E-16 83.3 4.2 68 94-174 6-80 (94)
49 2c2l_A CHIP, carboxy terminus 99.2 8.2E-12 2.8E-16 98.3 4.2 66 94-174 207-272 (281)
50 2ecj_A Tripartite motif-contai 99.2 1.5E-11 5E-16 74.5 4.2 44 94-141 14-58 (58)
51 1rmd_A RAG1; V(D)J recombinati 99.2 1.7E-11 5.8E-16 84.8 4.6 49 94-147 22-70 (116)
52 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 4.2E-16 86.9 3.3 53 93-147 70-125 (133)
53 2f42_A STIP1 homology and U-bo 99.1 2.8E-11 9.6E-16 89.8 4.5 65 94-173 105-169 (179)
54 1e4u_A Transcriptional repress 99.1 3.7E-11 1.3E-15 77.5 4.5 54 93-148 9-63 (78)
55 3htk_C E3 SUMO-protein ligase 99.1 4E-11 1.4E-15 93.3 3.7 67 94-173 180-248 (267)
56 3knv_A TNF receptor-associated 99.1 1.1E-10 3.7E-15 83.6 4.7 49 93-146 29-77 (141)
57 1bor_A Transcription factor PM 99.0 4.1E-11 1.4E-15 72.3 1.5 46 94-148 5-50 (56)
58 3hcs_A TNF receptor-associated 99.0 1.9E-10 6.5E-15 84.7 4.3 64 93-171 16-79 (170)
59 3k1l_B Fancl; UBC, ring, RWD, 99.0 9.2E-11 3.1E-15 94.3 2.3 56 93-148 306-374 (381)
60 2y1n_A E3 ubiquitin-protein li 99.0 2.3E-10 7.8E-15 94.0 3.9 49 95-148 332-380 (389)
61 2vje_A E3 ubiquitin-protein li 98.9 5.6E-10 1.9E-14 69.1 2.2 51 94-148 7-58 (64)
62 4ic3_A E3 ubiquitin-protein li 98.9 3.9E-10 1.3E-14 71.8 1.1 44 95-148 24-68 (74)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.6E-09 5.4E-14 66.2 3.6 51 93-147 4-59 (60)
64 2vje_B MDM4 protein; proto-onc 98.8 9.9E-10 3.4E-14 67.8 2.2 51 94-148 6-57 (63)
65 1wim_A KIAA0161 protein; ring 98.8 2.8E-09 9.7E-14 70.9 2.9 53 94-147 4-66 (94)
66 2ecg_A Baculoviral IAP repeat- 98.7 5.2E-09 1.8E-13 66.7 2.3 43 95-147 25-68 (75)
67 2yho_A E3 ubiquitin-protein li 98.6 3.1E-09 1.1E-13 68.6 0.1 45 95-149 18-63 (79)
68 2ea5_A Cell growth regulator w 98.6 1.8E-08 6.1E-13 63.0 3.3 46 94-149 14-60 (68)
69 2bay_A PRE-mRNA splicing facto 98.5 2E-08 6.9E-13 61.5 1.4 47 96-147 4-50 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 5E-08 1.7E-12 79.4 0.8 45 94-148 294-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 6.4E-07 2.2E-11 59.4 3.6 50 97-150 3-52 (101)
72 3nw0_A Non-structural maintena 98.2 6.5E-07 2.2E-11 69.2 3.7 51 94-147 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0079 2.7E-07 39.6 3.0 35 95-130 3-37 (101)
74 2lri_C Autoimmune regulator; Z 95.6 0.0094 3.2E-07 36.5 3.1 49 94-146 11-61 (66)
75 3m62_A Ubiquitin conjugation f 95.5 0.011 3.8E-07 53.5 4.5 64 94-173 890-954 (968)
76 2ko5_A Ring finger protein Z; 95.2 0.01 3.4E-07 38.7 2.4 51 94-152 27-78 (99)
77 2l5u_A Chromodomain-helicase-D 93.9 0.046 1.6E-06 32.7 2.9 47 93-143 9-57 (61)
78 1wil_A KIAA1045 protein; ring 92.9 0.078 2.7E-06 33.8 2.9 34 94-129 14-47 (89)
79 2k16_A Transcription initiatio 90.6 0.1 3.4E-06 32.4 1.5 53 94-147 17-71 (75)
80 3o36_A Transcription intermedi 90.1 0.074 2.5E-06 38.9 0.7 49 94-146 3-53 (184)
81 3u5n_A E3 ubiquitin-protein li 90.1 0.081 2.8E-06 39.5 0.9 49 94-146 6-56 (207)
82 2vpb_A Hpygo1, pygopus homolog 89.8 0.26 8.9E-06 29.8 2.9 34 94-127 7-41 (65)
83 1f62_A Transcription factor WS 89.3 0.19 6.4E-06 28.7 1.9 46 97-143 2-49 (51)
84 2l8s_A Integrin alpha-1; trans 89.3 2 7E-05 24.8 6.3 31 1-31 1-31 (54)
85 1mm2_A MI2-beta; PHD, zinc fin 89.2 0.088 3E-06 31.4 0.4 48 94-145 8-57 (61)
86 2yql_A PHD finger protein 21A; 89.2 0.053 1.8E-06 31.8 -0.6 47 93-143 7-55 (56)
87 1we9_A PHD finger family prote 89.1 0.25 8.4E-06 29.6 2.4 51 93-143 4-57 (64)
88 3i2d_A E3 SUMO-protein ligase 88.4 0.26 9E-06 40.0 2.8 67 95-174 249-317 (371)
89 2ku3_A Bromodomain-containing 87.9 0.22 7.4E-06 30.7 1.6 51 93-143 14-65 (71)
90 2cs3_A Protein C14ORF4, MY039 87.2 1.7 5.9E-05 27.3 5.4 75 93-176 13-90 (93)
91 1wep_A PHF8; structural genomi 87.1 0.84 2.9E-05 28.5 4.1 53 94-147 11-66 (79)
92 2lbm_A Transcriptional regulat 87.0 1 3.6E-05 31.5 4.9 48 92-143 60-116 (142)
93 2l43_A N-teminal domain from h 86.5 0.27 9.1E-06 31.6 1.4 54 94-147 24-78 (88)
94 2puy_A PHD finger protein 21A; 86.1 0.087 3E-06 31.3 -1.0 49 94-146 4-54 (60)
95 1fp0_A KAP-1 corepressor; PHD 85.7 0.56 1.9E-05 30.2 2.7 48 93-144 23-72 (88)
96 2yt5_A Metal-response element- 85.5 0.45 1.6E-05 28.5 2.1 53 93-145 4-62 (66)
97 1xwh_A Autoimmune regulator; P 85.4 0.12 4.1E-06 31.3 -0.6 48 93-144 6-55 (66)
98 2ri7_A Nucleosome-remodeling f 85.2 0.25 8.6E-06 35.6 0.9 50 94-144 7-59 (174)
99 3v43_A Histone acetyltransfera 84.7 0.26 8.8E-06 33.1 0.8 47 97-143 63-111 (112)
100 2ro1_A Transcription intermedi 84.1 0.22 7.6E-06 36.6 0.2 47 95-145 2-50 (189)
101 2kgg_A Histone demethylase jar 83.7 0.23 7.7E-06 28.5 0.1 46 97-142 4-52 (52)
102 4fo9_A E3 SUMO-protein ligase 82.8 0.84 2.9E-05 37.0 3.1 50 95-147 215-266 (360)
103 2e6r_A Jumonji/ARID domain-con 82.4 0.16 5.4E-06 33.0 -1.1 50 94-144 15-66 (92)
104 3lqh_A Histone-lysine N-methyl 81.6 0.63 2.2E-05 34.1 1.8 51 96-146 3-65 (183)
105 2xb1_A Pygopus homolog 2, B-ce 81.2 0.87 3E-05 30.2 2.3 51 96-146 4-63 (105)
106 2lv9_A Histone-lysine N-methyl 81.0 0.61 2.1E-05 30.5 1.4 46 96-143 29-75 (98)
107 2yw8_A RUN and FYVE domain-con 80.9 0.98 3.3E-05 28.4 2.3 53 95-147 19-75 (82)
108 3v43_A Histone acetyltransfera 80.8 2.4 8.2E-05 28.2 4.4 33 95-127 5-42 (112)
109 1weo_A Cellulose synthase, cat 80.3 3.7 0.00013 26.3 4.8 53 94-147 15-70 (93)
110 2kwj_A Zinc finger protein DPF 80.1 0.42 1.4E-05 32.1 0.4 34 96-129 2-41 (114)
111 3ql9_A Transcriptional regulat 79.3 3.5 0.00012 28.3 4.9 47 93-143 55-110 (129)
112 2ysm_A Myeloid/lymphoid or mix 79.1 0.59 2E-05 31.1 0.9 38 93-131 5-42 (111)
113 1y02_A CARP2, FYVE-ring finger 78.8 0.26 8.8E-06 33.7 -1.0 49 95-145 19-67 (120)
114 1wfk_A Zinc finger, FYVE domai 78.8 1.6 5.5E-05 27.9 2.9 54 94-147 8-66 (88)
115 3asl_A E3 ubiquitin-protein li 78.5 0.48 1.6E-05 29.0 0.3 46 97-143 20-68 (70)
116 1z2q_A LM5-1; membrane protein 78.1 1.5 5.2E-05 27.6 2.6 36 94-129 20-55 (84)
117 1vfy_A Phosphatidylinositol-3- 77.8 1.5 5.2E-05 26.8 2.5 32 96-127 12-43 (73)
118 1joc_A EEA1, early endosomal a 77.4 1.4 4.8E-05 30.1 2.4 34 95-128 69-102 (125)
119 1z60_A TFIIH basal transcripti 77.4 1.3 4.4E-05 26.2 1.9 42 97-141 17-58 (59)
120 2e6s_A E3 ubiquitin-protein li 77.2 0.48 1.6E-05 29.6 -0.0 46 97-143 28-76 (77)
121 1zfo_A LAsp-1; LIM domain, zin 76.8 0.99 3.4E-05 22.8 1.2 28 96-126 4-31 (31)
122 3t7l_A Zinc finger FYVE domain 75.7 1.8 6.1E-05 27.7 2.4 53 95-147 20-76 (90)
123 3o70_A PHD finger protein 13; 75.4 0.66 2.3E-05 28.2 0.3 48 94-143 18-66 (68)
124 3zyq_A Hepatocyte growth facto 75.3 1.8 6.3E-05 32.5 2.8 36 94-129 163-198 (226)
125 3shb_A E3 ubiquitin-protein li 75.1 0.5 1.7E-05 29.5 -0.3 46 97-143 28-76 (77)
126 4gne_A Histone-lysine N-methyl 75.1 2.4 8.3E-05 28.1 3.0 47 93-145 13-63 (107)
127 1x4u_A Zinc finger, FYVE domai 74.7 1.8 6.3E-05 27.2 2.3 35 94-128 13-47 (84)
128 1dvp_A HRS, hepatocyte growth 73.8 1.5 5E-05 32.8 1.9 35 94-128 160-194 (220)
129 2o35_A Hypothetical protein DU 72.7 1.5 5E-05 28.7 1.4 12 121-132 43-54 (105)
130 3fyb_A Protein of unknown func 72.6 1.5 5.1E-05 28.6 1.4 12 121-132 42-53 (104)
131 3ask_A E3 ubiquitin-protein li 72.0 0.83 2.8E-05 34.6 0.1 47 97-144 176-225 (226)
132 2cu8_A Cysteine-rich protein 2 71.8 2.1 7.3E-05 25.9 2.0 40 95-147 9-48 (76)
133 1zbd_B Rabphilin-3A; G protein 71.6 2 6.9E-05 29.7 2.1 34 93-126 53-87 (134)
134 2co8_A NEDD9 interacting prote 71.0 2.7 9.1E-05 26.0 2.4 41 94-147 14-54 (82)
135 2l2t_A Receptor tyrosine-prote 69.4 12 0.00041 20.6 4.7 10 13-22 14-23 (44)
136 2klu_A T-cell surface glycopro 68.3 17 0.00057 21.8 5.5 28 14-41 12-39 (70)
137 2vnf_A ING 4, P29ING4, inhibit 66.8 2 6.7E-05 25.3 1.0 45 94-143 9-58 (60)
138 3mpx_A FYVE, rhogef and PH dom 66.3 1.2 4.2E-05 36.4 0.0 51 95-145 375-430 (434)
139 2d8y_A Eplin protein; LIM doma 66.2 5 0.00017 25.2 3.0 40 95-147 15-54 (91)
140 2ks1_B Epidermal growth factor 66.2 12 0.0004 20.6 4.0 15 10-24 12-26 (44)
141 2dj7_A Actin-binding LIM prote 66.1 3.2 0.00011 25.6 2.0 40 94-146 14-53 (80)
142 1weu_A Inhibitor of growth fam 66.0 1.7 5.9E-05 28.0 0.7 47 94-145 35-86 (91)
143 1wen_A Inhibitor of growth fam 63.0 2.8 9.6E-05 25.6 1.2 47 94-145 15-66 (71)
144 1wev_A Riken cDNA 1110020M19; 62.3 3.2 0.00011 26.4 1.5 53 95-147 16-75 (88)
145 1wee_A PHD finger family prote 61.9 4 0.00014 24.7 1.8 51 94-145 15-67 (72)
146 3c6w_A P28ING5, inhibitor of g 61.7 1.6 5.4E-05 25.6 -0.1 45 94-143 8-57 (59)
147 2d8v_A Zinc finger FYVE domain 61.6 5.4 0.00019 24.0 2.2 32 94-130 7-39 (67)
148 1x4k_A Skeletal muscle LIM-pro 61.5 4.2 0.00014 24.1 1.9 40 96-147 6-45 (72)
149 1wyh_A SLIM 2, skeletal muscle 61.5 4.1 0.00014 24.1 1.8 40 96-147 6-45 (72)
150 1a7i_A QCRP2 (LIM1); LIM domai 61.3 1.8 6.2E-05 26.6 0.1 40 95-147 7-46 (81)
151 1iml_A CRIP, cysteine rich int 60.4 2.8 9.6E-05 25.3 0.9 10 97-106 29-38 (76)
152 1g47_A Pinch protein; LIM doma 57.8 6 0.00021 23.7 2.1 41 95-147 11-51 (77)
153 1x63_A Skeletal muscle LIM-pro 57.7 6.1 0.00021 24.1 2.2 40 96-147 16-55 (82)
154 1nyp_A Pinch protein; LIM doma 57.3 4.6 0.00016 23.5 1.5 38 96-147 6-43 (66)
155 2cor_A Pinch protein; LIM doma 57.1 8.1 0.00028 23.5 2.7 39 95-147 15-53 (79)
156 1wem_A Death associated transc 56.9 12 0.0004 22.8 3.4 48 96-145 17-71 (76)
157 3a1b_A DNA (cytosine-5)-methyl 56.9 11 0.00038 26.8 3.6 48 93-144 77-134 (159)
158 2l4z_A DNA endonuclease RBBP8, 56.7 4 0.00014 27.5 1.2 39 95-146 61-99 (123)
159 2jwa_A Receptor tyrosine-prote 56.1 23 0.00079 19.4 5.5 9 29-37 30-38 (44)
160 3f6q_B LIM and senescent cell 56.0 6.4 0.00022 23.1 2.0 41 95-147 11-51 (72)
161 2g6q_A Inhibitor of growth pro 55.3 2.3 7.7E-05 25.3 -0.2 45 94-143 10-59 (62)
162 3kqi_A GRC5, PHD finger protei 55.2 12 0.0004 22.8 3.1 48 97-145 12-62 (75)
163 2d8x_A Protein pinch; LIM doma 54.8 5.9 0.0002 23.3 1.7 39 95-147 5-43 (70)
164 1x4l_A Skeletal muscle LIM-pro 53.9 8.2 0.00028 22.8 2.3 39 96-147 6-47 (72)
165 1x61_A Thyroid receptor intera 53.9 8.4 0.00029 22.7 2.3 38 96-146 6-44 (72)
166 1x62_A C-terminal LIM domain p 53.7 9.4 0.00032 23.1 2.6 39 95-147 15-53 (79)
167 1x64_A Alpha-actinin-2 associa 52.5 13 0.00045 23.0 3.2 39 95-147 25-63 (89)
168 1x68_A FHL5 protein; four-and- 51.8 7.9 0.00027 23.2 2.0 39 96-147 6-47 (76)
169 2k1k_A Ephrin type-A receptor 51.5 17 0.00059 19.2 3.0 21 12-32 13-33 (38)
170 3o7a_A PHD finger protein 13 v 51.0 2.9 0.0001 23.6 -0.2 43 100-143 8-51 (52)
171 1m3v_A FLIN4, fusion of the LI 49.8 13 0.00045 24.6 3.0 48 96-147 33-81 (122)
172 1zza_A Stannin, AG8_1; helix, 49.2 14 0.00047 22.6 2.6 28 10-37 14-41 (90)
173 2d8z_A Four and A half LIM dom 49.0 9.6 0.00033 22.3 2.0 38 96-147 6-43 (70)
174 1x6a_A LIMK-2, LIM domain kina 48.1 8 0.00027 23.5 1.5 38 96-147 16-53 (81)
175 2pv0_B DNA (cytosine-5)-methyl 47.9 14 0.00047 30.2 3.3 48 94-145 92-149 (386)
176 3mjh_B Early endosome antigen 47.8 2.5 8.6E-05 22.0 -0.7 17 95-111 5-21 (34)
177 2dar_A PDZ and LIM domain prot 47.3 7.3 0.00025 24.3 1.3 39 95-147 25-63 (90)
178 2l3k_A Rhombotin-2, linker, LI 46.8 7.2 0.00025 26.0 1.3 33 97-131 38-70 (123)
179 1v6g_A Actin binding LIM prote 46.5 7.6 0.00026 23.6 1.2 37 97-147 17-53 (81)
180 1j2o_A FLIN2, fusion of rhombo 45.1 11 0.00039 24.6 2.1 13 118-130 52-64 (114)
181 2gmg_A Hypothetical protein PF 44.6 4.3 0.00015 26.8 -0.2 25 116-147 72-96 (105)
182 2ku7_A MLL1 PHD3-CYP33 RRM chi 44.5 48 0.0017 21.7 5.3 30 116-145 7-45 (140)
183 2zet_C Melanophilin; complex, 43.4 13 0.00043 26.2 2.1 50 94-144 67-117 (153)
184 2jvx_A NF-kappa-B essential mo 43.4 6.3 0.00021 19.5 0.4 13 135-147 3-15 (28)
185 2jp3_A FXYD domain-containing 41.3 44 0.0015 20.0 4.0 32 6-37 13-44 (67)
186 3kv4_A PHD finger protein 8; e 40.8 11 0.00037 31.4 1.6 51 97-147 6-59 (447)
187 2cur_A Skeletal muscle LIM-pro 40.6 16 0.00053 21.3 2.0 38 96-147 6-43 (69)
188 2ehe_A Four and A half LIM dom 40.1 15 0.00052 22.2 2.0 40 96-147 16-55 (82)
189 1wew_A DNA-binding family prot 39.9 28 0.00096 21.2 3.2 50 94-145 15-73 (78)
190 1wig_A KIAA1808 protein; LIM d 39.8 13 0.00046 22.1 1.6 37 96-146 6-42 (73)
191 2egq_A FHL1 protein; LIM domai 37.3 14 0.00047 22.0 1.4 39 96-147 16-58 (77)
192 1x4i_A Inhibitor of growth pro 36.1 11 0.00037 22.8 0.7 50 94-146 5-57 (70)
193 1afo_A Glycophorin A; integral 36.0 51 0.0017 17.5 4.4 28 10-37 11-38 (40)
194 2jmo_A Parkin; IBR, E3 ligase, 35.7 2.7 9.4E-05 26.1 -2.1 14 116-129 55-68 (80)
195 2dlo_A Thyroid receptor-intera 35.0 13 0.00045 22.5 1.0 38 96-147 16-53 (81)
196 2jo1_A Phospholemman; FXYD1, N 34.6 77 0.0026 19.1 5.6 35 3-37 9-43 (72)
197 2cup_A Skeletal muscle LIM-pro 34.5 22 0.00075 22.4 2.1 44 96-146 34-77 (101)
198 1x3h_A Leupaxin; paxillin fami 33.0 19 0.00067 21.5 1.6 38 96-147 16-53 (80)
199 2xqn_T Testin, TESS; metal-bin 33.0 21 0.0007 23.6 1.8 46 95-147 30-75 (126)
200 2pk7_A Uncharacterized protein 32.6 9.6 0.00033 23.1 0.1 13 135-147 8-20 (69)
201 2jmi_A Protein YNG1, ING1 homo 32.6 6.4 0.00022 25.2 -0.8 45 94-143 25-75 (90)
202 2cuq_A Four and A half LIM dom 32.5 21 0.00072 21.3 1.7 38 96-147 16-53 (80)
203 2rgt_A Fusion of LIM/homeobox 32.5 23 0.00078 24.8 2.1 46 94-147 32-77 (169)
204 2iyb_E Testin, TESS, TES; LIM 31.4 18 0.00062 20.9 1.2 38 97-147 4-44 (65)
205 1b8t_A Protein (CRP1); LIM dom 30.5 21 0.00072 25.6 1.6 12 119-130 55-66 (192)
206 2kpi_A Uncharacterized protein 29.9 21 0.00072 20.5 1.2 15 94-108 9-23 (56)
207 1rut_X Flinc4, fusion protein 29.8 23 0.0008 25.3 1.8 37 97-145 71-107 (188)
208 2jny_A Uncharacterized BCR; st 29.1 8.9 0.0003 23.1 -0.5 18 128-147 5-22 (67)
209 2vrw_B P95VAV, VAV1, proto-onc 29.0 40 0.0014 27.0 3.3 33 94-126 356-389 (406)
210 2xjy_A Rhombotin-2; oncoprotei 27.8 27 0.00092 23.1 1.7 37 97-145 68-104 (131)
211 2kdx_A HYPA, hydrogenase/ureas 27.3 40 0.0014 22.2 2.5 28 114-149 76-104 (119)
212 2lcq_A Putative toxin VAPC6; P 26.7 19 0.00066 25.2 0.8 25 114-146 135-159 (165)
213 2csz_A Synaptotagmin-like prot 26.5 34 0.0012 21.1 1.8 33 93-125 23-56 (76)
214 2jtn_A LIM domain-binding prot 26.3 31 0.0011 24.4 1.9 26 118-147 106-131 (182)
215 3pwf_A Rubrerythrin; non heme 26.0 37 0.0013 24.1 2.2 27 110-145 137-163 (170)
216 2jne_A Hypothetical protein YF 25.8 24 0.00082 22.9 1.0 42 96-148 33-74 (101)
217 2zxe_G FXYD10, phospholemman-l 25.5 21 0.00073 21.8 0.7 19 7-25 16-34 (74)
218 2rsd_A E3 SUMO-protein ligase 25.4 24 0.00081 20.9 0.9 48 94-143 9-64 (68)
219 2a20_A Regulating synaptic mem 24.6 49 0.0017 19.4 2.1 32 94-126 8-40 (62)
220 3kv5_D JMJC domain-containing 23.9 52 0.0018 27.6 3.1 50 96-146 38-90 (488)
221 2gsm_B Cytochrome C oxidase su 23.9 94 0.0032 23.7 4.3 20 20-39 42-61 (262)
222 2das_A Zinc finger MYM-type pr 23.8 73 0.0025 18.6 2.8 37 95-131 20-57 (62)
223 2ct7_A Ring finger protein 31; 22.9 5.4 0.00018 25.1 -2.5 32 98-129 28-61 (86)
224 3hb3_B Cytochrome C oxidase su 22.8 1.4E+02 0.0047 23.3 5.1 9 124-132 266-274 (298)
225 1lko_A Rubrerythrin all-iron(I 22.7 22 0.00077 25.7 0.5 26 111-144 155-180 (191)
226 1yuz_A Nigerythrin; rubrythrin 22.5 48 0.0016 24.2 2.3 27 110-145 170-196 (202)
227 1wd2_A Ariadne-1 protein homol 20.8 24 0.00083 20.5 0.3 13 135-147 6-18 (60)
228 2l34_A TYRO protein tyrosine k 20.6 97 0.0033 15.7 2.9 21 12-32 9-29 (33)
229 2hf1_A Tetraacyldisaccharide-1 20.3 31 0.001 20.7 0.7 13 135-147 8-20 (68)
230 2jr6_A UPF0434 protein NMA0874 20.2 31 0.0011 20.7 0.7 13 135-147 8-20 (68)
231 3vhs_A ATPase wrnip1; zinc fin 20.1 30 0.001 16.6 0.5 12 136-147 7-18 (29)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=108.81 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=64.5
Q ss_pred CCCCCCChHHHHhhccccccccccccCCCCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccc
Q 030350 65 SSTCSISSQMIKERLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAP 144 (179)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~ 144 (179)
........++..+.+|...+.+.... .+.+..|+||++.|..++.+..+ +|+|.||..||.+|+.. +.+||+||.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~ 86 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCM 86 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCB
T ss_pred CcCCCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCcc
Confidence 34455677888888888877665432 24567899999999998888878 79999999999999987 7899999998
Q ss_pred ccc
Q 030350 145 LLT 147 (179)
Q Consensus 145 ~~~ 147 (179)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=101.02 Aligned_cols=65 Identities=34% Similarity=0.743 Sum_probs=52.4
Q ss_pred hccccccccccccCCCCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 78 RLVLASFGDIKVRMPWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.+|...+.... ...++.+|+||++.|..++.++.+ +|+|.||..||.+|+.. +..||+||+++.+
T Consensus 8 ~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 8 QLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred hCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 45555554332 224566899999999998888878 79999999999999998 7899999998876
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=4e-16 Score=94.14 Aligned_cols=51 Identities=45% Similarity=0.974 Sum_probs=45.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
++.+|+||++.+..++....++.|+|.||..||.+|+.. +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 456899999999998888888569999999999999988 789999999864
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=95.97 Aligned_cols=54 Identities=39% Similarity=0.949 Sum_probs=47.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~ 149 (179)
..+..|+||++.+..+..+..+ +|+|.||..||.+|+.. +.+||+||.++...+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLIT--NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHc--CCCCcCcCccccCcC
Confidence 3556899999999887777777 89999999999999998 778999999997743
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=96.67 Aligned_cols=53 Identities=38% Similarity=0.931 Sum_probs=47.3
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
..+..|+||++.+..+..+..+ +|+|.||..||.+|+.. +..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 3566899999999998888877 79999999999999998 67999999998764
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2e-15 Score=97.50 Aligned_cols=53 Identities=36% Similarity=0.817 Sum_probs=46.9
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
..+.+|+||++.|..+..+..+ +|+|.||..||.+|+.. +..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT--TCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc--CCcCcCcCCccCCc
Confidence 3566899999999988887777 89999999999999987 78999999999773
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=98.52 Aligned_cols=52 Identities=35% Similarity=0.809 Sum_probs=42.7
Q ss_pred Cccccccccccccc-----------CCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEE-----------DDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++++|+||++.|.+ ++.++.+++|+|.||..||.+|+.. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 45578888888854 4556667679999999999999998 7899999999865
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=5.8e-15 Score=88.94 Aligned_cols=51 Identities=27% Similarity=0.731 Sum_probs=42.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
.+.+|+||++.+.+++......+|+|.||..||.+|+.. +..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 456899999999775544444489999999999999998 689999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=1.2e-14 Score=100.58 Aligned_cols=59 Identities=22% Similarity=0.528 Sum_probs=44.7
Q ss_pred CcccccccccccccCC--------------eeeEccCCCCcccHHhHHHHHhc---CCCCCCcccccccccccccc
Q 030350 94 VPDTCAVCLNHMEEDD--------------LVRELRNCCHVFHRECIDRWVDY---DHHKTCPLCRAPLLTYLQSK 152 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~~CP~CR~~~~~~~~~~ 152 (179)
.+.+|+||++.|..+. .+..+.+|+|.||..||..|+.. ..+.+||+||+.+.....++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence 3458999999997654 23334489999999999999953 12678999999987754443
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=9.5e-15 Score=94.32 Aligned_cols=65 Identities=26% Similarity=0.605 Sum_probs=54.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
++..|+||++.|.++..+ +|||.||..||.+|+..+ +..||+||.++.. ..+.+|..+++++..|
T Consensus 7 ~~~~C~IC~~~~~~Pv~~----~CgH~fc~~Ci~~~~~~~-~~~CP~C~~~~~~----------~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIV----STGQTYERSSIQKWLDAG-HKTCPKSQETLLH----------AGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSCTTTSCCCSSEEEE----TTTEEEEHHHHHHHHTTT-CCBCTTTCCBCSS----------CCCEECTTTHHHHHHH
T ss_pred ccCCCCCccccccCCEEc----CCCCeecHHHHHHHHHHC-cCCCCCCcCCCCh----------hhCccCHHHHHHHHHH
Confidence 456899999999987554 799999999999999853 6789999999876 5677787777777765
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=1.5e-14 Score=91.63 Aligned_cols=52 Identities=27% Similarity=0.634 Sum_probs=43.4
Q ss_pred CCcccccccccccccC----CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEED----DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.++.+|+||++.+.++ .....+ +|||.||..||.+|+.. +..||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc--CCCCCCCCCccCh
Confidence 4566899999999875 223334 89999999999999998 7899999999876
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=94.62 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCcccccccccccccCCeeeEccC-CCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHH
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRN-CCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILY 171 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (179)
.++..|+||++.|.++..+ + |||.||..||..|+.......||+||.++... ..+.+|..+++++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~---------~~~~~n~~l~~~i~ 77 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP---------DALIANKFLRQAVN 77 (92)
T ss_dssp CTTTEETTTTEECSSCEEC----TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT---------TSCEECHHHHHHHH
T ss_pred CcCCCCCCCChhhcCceEC----CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc---------cccCcCHHHHHHHH
Confidence 3566899999999987544 7 99999999999999864356899999987431 57889999999887
Q ss_pred Hhc
Q 030350 172 IFG 174 (179)
Q Consensus 172 ~~~ 174 (179)
.|-
T Consensus 78 ~~~ 80 (92)
T 3ztg_A 78 NFK 80 (92)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.49 E-value=1e-14 Score=99.74 Aligned_cols=68 Identities=28% Similarity=0.596 Sum_probs=48.9
Q ss_pred hhccccccccccccC-CCCcccccccccccccCC--------------eeeEccCCCCcccHHhHHHHHhcCCCCCCccc
Q 030350 77 ERLVLASFGDIKVRM-PWVPDTCAVCLNHMEEDD--------------LVRELRNCCHVFHRECIDRWVDYDHHKTCPLC 141 (179)
Q Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~C 141 (179)
.++.+.++..+.... ..+++.|+||++.|..+. ....+.+|+|.||..||.+|+.. +.+||+|
T Consensus 18 ~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~C 95 (106)
T 3dpl_R 18 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLD 95 (106)
T ss_dssp CSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSS
T ss_pred CceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCC
Confidence 345555555443322 235678999999998651 12233489999999999999998 8899999
Q ss_pred ccccc
Q 030350 142 RAPLL 146 (179)
Q Consensus 142 R~~~~ 146 (179)
|+++.
T Consensus 96 r~~~~ 100 (106)
T 3dpl_R 96 NREWE 100 (106)
T ss_dssp CSBCC
T ss_pred CCcce
Confidence 99864
No 14
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=97.41 Aligned_cols=65 Identities=18% Similarity=0.568 Sum_probs=54.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
++..|+||++.|.++..+ ++|||.||..||.+|+.. +..||+||..+.. ..+.+|..+++++..+
T Consensus 21 ~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~----------~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMII---PQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTE----------PDLKNNRILDELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBCSSEEEC---TTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG----------GGCEECHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEE---CCCCCHhhHHHHHHHHHC--CCCCCCCCCcCCh----------hhCCcCHHHHHHHHHH
Confidence 345899999999876443 379999999999999997 7899999999887 5688899888888765
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=89.45 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=42.6
Q ss_pred CCcccccccccccccCC---eeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDD---LVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~---~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.+...|+||++.+.++. ....+.+|||.||..||.+|+.. +..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 35568999999998752 22223389999999999999998 7899999998754
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=97.09 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=58.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
++..|+||++.|.++..+ +|||.||..||..|+..+ ...||+||.++... ..+.+|..+.+++..+
T Consensus 51 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---------~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQ-VFSCPACRYDLGRS---------YAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCTT---------CCCCCCHHHHHHHHHH
T ss_pred cCCCCCcCChHHcCcEEe----eCCCcccHHHHHHHHhHC-cCCCCCCCccCCCC---------CCCCCCHHHHHHHHHH
Confidence 445899999999977554 899999999999999852 45899999998652 4788999999999988
Q ss_pred cCCc
Q 030350 174 GDDL 177 (179)
Q Consensus 174 ~~~~ 177 (179)
..+.
T Consensus 117 ~p~~ 120 (124)
T 3fl2_A 117 FPGY 120 (124)
T ss_dssp STTT
T ss_pred cccc
Confidence 7654
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=89.73 Aligned_cols=54 Identities=20% Similarity=0.672 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCeeeEccCCC-----CcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCC-----HVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
.++..|+||++++.+++.+ .+ ||+ |.||..||++|+......+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4566899999999877665 35 896 999999999999884346899999998764
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=6.5e-14 Score=86.71 Aligned_cols=51 Identities=27% Similarity=0.674 Sum_probs=42.3
Q ss_pred CcccccccccccccC----CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEED----DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++.+|+||++.+.++ .....+ +|||.||..|+.+|+.. +..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 345899999999875 222333 89999999999999998 7899999999876
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=8.8e-14 Score=95.30 Aligned_cols=72 Identities=19% Similarity=0.451 Sum_probs=56.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
++..|+||++.+.++..+ .+|||.||..||..|+.. +..||+||..+.... +-..+.+|..+.+++..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~------~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLET--SKYCPICDVQVHKTR------PLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGTBCTTTSSBCSSEEEE---TTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSC------GGGGEEECHHHHHHHHHH
T ss_pred CcCCCccCChHHhCcCEe---CCCCChhhHHHHHHHHHh--CCcCcCCCccccccC------cccccCcCHHHHHHHHHH
Confidence 455899999999876443 289999999999999998 689999999987621 112567788888888877
Q ss_pred cCC
Q 030350 174 GDD 176 (179)
Q Consensus 174 ~~~ 176 (179)
-.+
T Consensus 83 ~~~ 85 (108)
T 2ckl_A 83 VPG 85 (108)
T ss_dssp STT
T ss_pred hhh
Confidence 553
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=89.08 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.....|+||++.+.++.. + +|||.||..||.+|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV---T-KCRHYFCESCALEHFRA--TPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE---C-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeE---c-cCCCHhHHHHHHHHHHC--CCcCCCcCccccc
Confidence 345689999999987643 3 89999999999999987 7899999999863
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=9.8e-14 Score=87.12 Aligned_cols=51 Identities=35% Similarity=0.905 Sum_probs=42.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYL 149 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~ 149 (179)
.+..|+||++.+.++. ..+ +|||.||..|+.+|+.. +..||+||.++....
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDPSNYS--MAL-PCLHAFCYVCITRWIRQ--NPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCCCSCE--EET-TTTEEESTTHHHHHHHH--SCSTTTTCCCCCCEE
T ss_pred CCCCCeeCCccccCCc--Eec-CCCCeeHHHHHHHHHhC--cCcCcCCChhhHhhh
Confidence 4568999999987643 334 89999999999999998 789999999987643
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=87.02 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=42.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++..|+||++.+.++..+ .+|||.||..||.+|+.. +..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLIDATTI---TECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSSCEEC---SSSCCEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHCcCEE---CCCCCHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 556899999999876443 289999999999999988 7899999999876
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=5.8e-14 Score=95.03 Aligned_cols=64 Identities=25% Similarity=0.559 Sum_probs=48.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILY 171 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (179)
++..|+||++.|.++..+ + +|||.||..||.+|+... ...||+||.++.. ..+..++.++.+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~--~-~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~----------~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLC--P-HCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQL----------RELVNCRWAEEVTQ 84 (100)
T ss_dssp HHTBCTTTCSBCSSEEEC--T-TTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCG----------GGCEECTTHHHHHH
T ss_pred CCCCCccCCccccCcccc--C-CCCChhhHHHHHHHHHHC-cCCCCCCCCcCCH----------HHhHhhHHHHHHHH
Confidence 455899999999875441 2 899999999999999983 2689999999976 34445554554443
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.40 E-value=1.4e-14 Score=100.45 Aligned_cols=68 Identities=28% Similarity=0.596 Sum_probs=8.0
Q ss_pred hhccccccccccccC-CCCcccccccccccccCC--------------eeeEccCCCCcccHHhHHHHHhcCCCCCCccc
Q 030350 77 ERLVLASFGDIKVRM-PWVPDTCAVCLNHMEEDD--------------LVRELRNCCHVFHRECIDRWVDYDHHKTCPLC 141 (179)
Q Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~C 141 (179)
.++.+.++....... +..++.|+||++.|..+. ....+++|+|.||..||.+|+.. +.+||+|
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~C 106 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLD 106 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCC
Confidence 445555554443211 235678999999997632 12333489999999999999998 8899999
Q ss_pred ccccc
Q 030350 142 RAPLL 146 (179)
Q Consensus 142 R~~~~ 146 (179)
|+++.
T Consensus 107 r~~~~ 111 (117)
T 4a0k_B 107 NREWE 111 (117)
T ss_dssp -----
T ss_pred CCeee
Confidence 99864
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=2e-13 Score=85.08 Aligned_cols=52 Identities=23% Similarity=0.530 Sum_probs=42.8
Q ss_pred ccccccccc-ccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLN-HMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~-~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+..|+||++ .+.++.....+.+|||.||..||.+|+..+ ...||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCcccc
Confidence 458999999 888876544444899999999999998753 5679999999876
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=87.66 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
.++.+|+||++.+.++..+ +|+|.||..||.+|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASWL--GKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE----TTTEEEEHHHHHHCTTC--SSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEc----cCCCHHHHHHHHHHHHC--CCcCcCcCchhCHh
Confidence 3556899999999776433 79999999999999987 78999999998764
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=97.92 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=58.7
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
+...|+||++.|.++..+ +|||.||..||..|+..+ ...||+||.++... ..+.+|..+.+++..|
T Consensus 77 ~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---------~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQ-VFSCPACRHDLGQN---------YIMIPNEILQTLLDLF 142 (150)
T ss_dssp HHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCTT---------CCCCBCHHHHHHHHHH
T ss_pred cCCEeecCChhhcCCEEc----CCCCchhHHHHHHHHHhC-CCcCCCCCccCCCC---------CCCCCCHHHHHHHHHH
Confidence 456899999999887553 899999999999999862 45899999999872 2789999999999988
Q ss_pred cCCc
Q 030350 174 GDDL 177 (179)
Q Consensus 174 ~~~~ 177 (179)
-.++
T Consensus 143 ~p~~ 146 (150)
T 1z6u_A 143 FPGY 146 (150)
T ss_dssp STTT
T ss_pred hhHh
Confidence 7654
No 28
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=3.2e-13 Score=88.76 Aligned_cols=64 Identities=17% Similarity=0.055 Sum_probs=57.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
+...|+||++.|.++..+ +|||.|++.||.+|+.. +.+||+||.++.. ..+.+|..+++++..|
T Consensus 13 ~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~----------~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLLN--SPTDPFNRQMLTE----------SMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG----------GGCEECHHHHHHHHHH
T ss_pred hheECcccCchhcCCeEC----CCCCEECHHHHHHHHhc--CCCCCCCcCCCCh----------HhcchHHHHHHHHHHH
Confidence 456899999999998766 79999999999999997 7899999999877 6889999999998776
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=6.3e-14 Score=100.21 Aligned_cols=47 Identities=30% Similarity=0.787 Sum_probs=41.1
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+..|+||++.|.++..+ +|||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~----~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEE----TTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceEC----CCCCCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 45899999999876443 89999999999999987 7899999999865
No 30
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.36 E-value=6.2e-13 Score=89.95 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=57.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
+...|+||++.|.++..+ +|||.|++.||.+|+.. +.+||+||.++.. ..+.+|..+++++..|
T Consensus 28 ~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~----------~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLN--SPTDPFNRQTLTE----------SMLEPVPELKEQIQAW 91 (100)
T ss_dssp TTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTS--CSBCSSSCCBCCT----------TSSEECHHHHHHHHHH
T ss_pred HhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHc--CCCCCCCCCCCCh----------hhceECHHHHHHHHHH
Confidence 466899999999998776 79999999999999986 7899999999987 6899999999998876
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.6e-13 Score=87.32 Aligned_cols=54 Identities=22% Similarity=0.620 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCe-eeEccCCCCcccHHhHHHHHhcC-CCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDL-VRELRNCCHVFHRECIDRWVDYD-HHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~~-~~~~CP~CR~~~~~ 147 (179)
.+..+|+||++.|.+.+. ...+ +|||.||..|+.+|+... ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 355689999999998654 3344 899999999999999872 13689999998765
No 32
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=85.87 Aligned_cols=50 Identities=22% Similarity=0.518 Sum_probs=41.4
Q ss_pred CcccccccccccccCCeeeEccC-CCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN-CCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~-C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++..|+||++.|.++..+ + |||.||..||.+|+.......||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEEC----SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEc----CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 556899999999987553 6 9999999999999987323689999997644
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=5.3e-13 Score=89.99 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred CcccccccccccccCCeeeEccCCC-CcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCC-HVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYI 172 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (179)
++..|+||++.|.++..+ +|| |.|++.||.+|+.. +.+||+||.++.. ..+.+|..+++++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~----------~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM----------DQIRPNTELKEKIQR 84 (98)
T ss_dssp TTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT----------TTSEECHHHHHHHHH
T ss_pred HhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh----------hhceEcHHHHHHHHH
Confidence 456899999999998766 799 99999999999987 7899999999987 689999999999887
Q ss_pred h
Q 030350 173 F 173 (179)
Q Consensus 173 ~ 173 (179)
|
T Consensus 85 ~ 85 (98)
T 1wgm_A 85 W 85 (98)
T ss_dssp H
T ss_pred H
Confidence 6
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-14 Score=91.94 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC-----CCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD-----HHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-----~~~~CP~CR~~~~~ 147 (179)
.++.+|+||++.|.++..+ +|||.||..||.+|+... ....||+||.++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCC----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeEC----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3566899999999887554 799999999999999862 25679999999876
No 35
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.6e-13 Score=82.38 Aligned_cols=50 Identities=16% Similarity=0.427 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.++..|+||++.+.++..+ +|||.||..||.+|+..+ ...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSS-SPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTS-SCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhC-cCCCCCCCcCCCh
Confidence 3556899999999887664 799999999999999632 6789999998865
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=1.2e-13 Score=90.19 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=42.0
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC----CCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD----HHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~~~CP~CR~~~~~ 147 (179)
.+..|+||++.+.++.. + +|+|.||..|+..|+... ....||+||.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS---A-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEE---C-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCccee---C-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45689999999988753 3 799999999999999873 25679999999876
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.34 E-value=3.5e-13 Score=99.02 Aligned_cols=68 Identities=22% Similarity=0.483 Sum_probs=54.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
....|+||++.|.++..+ + +|||.||..||..|+..+ +..||+||.++... ..+.+|..+++++..+
T Consensus 53 ~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---------~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTT--K-ECLHRFCADCIITALRSG-NKECPTCRKKLVSK---------RSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBCSSEEEE--T-TTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSG---------GGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEe--C-CCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCc---------ccCCcCHHHHHHHHHH
Confidence 455899999999875433 2 899999999999999863 57799999998642 3567888888888776
Q ss_pred c
Q 030350 174 G 174 (179)
Q Consensus 174 ~ 174 (179)
-
T Consensus 120 ~ 120 (165)
T 2ckl_B 120 Y 120 (165)
T ss_dssp C
T ss_pred H
Confidence 4
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-13 Score=89.43 Aligned_cols=50 Identities=24% Similarity=0.618 Sum_probs=42.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc----CCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY----DHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~~~~~CP~CR~~~~~ 147 (179)
+...|+||++.+.++..+ +|||.||..|+..|+.. +....||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSL----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCC----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeC----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456899999999876544 79999999999999976 235679999999876
No 39
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=85.80 Aligned_cols=48 Identities=33% Similarity=0.951 Sum_probs=41.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
++..|+||++.+.+ ..+ +|+|.||..|+.+|+.. +..||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDR--HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCC--CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHC--cCcCCCcCCcccCC
Confidence 45689999999887 233 89999999999999997 88999999998763
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=83.76 Aligned_cols=52 Identities=15% Similarity=0.457 Sum_probs=43.2
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+...+|+||.+.+..++... .|+|.||..||.+||+...+.+||+||+++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34568999999998765544 79999999999999988333789999998865
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=5.4e-13 Score=91.67 Aligned_cols=49 Identities=24% Similarity=0.662 Sum_probs=40.9
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC-CCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD-HHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~~CP~CR~~~~~ 147 (179)
...|+||++.+.++..+ +|||.||..||..|+... ....||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBC----TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEEC----CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 44899999999887554 799999999999999862 12479999998876
No 42
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=82.83 Aligned_cols=51 Identities=24% Similarity=0.580 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-CCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-DHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~~~CP~CR~~~~~ 147 (179)
.++..|+||++.+.++..+ +|||.||..||..|+.. +....||+||.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC----TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEc----CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3556899999999875443 89999999999999973 125689999998865
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.27 E-value=2.5e-12 Score=89.41 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=50.3
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHH
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILY 171 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (179)
.+...|+||++.+.++..+ +|||.||..||.+|+..+ ...||+||.++.. ....++..+++++.
T Consensus 16 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~----------~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 16 ESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDA-GHKCPVDNEILLE----------NQLFPDNFAKREIL 79 (118)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG----------GGCEECHHHHHHHH
T ss_pred CCCCCCCcCChhhcCeEEC----CcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH----------HhcccCHHHHHHHc
Confidence 3566999999999887443 799999999999999872 2489999999877 34556666666654
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2e-12 Score=89.81 Aligned_cols=63 Identities=21% Similarity=0.536 Sum_probs=53.0
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
+...|+||++.|.++..+. +|||.||..||..|+. ..||+||.++.. ..+.+|+.+.+++..+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~---~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~----------~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLG---GCEHIFCSNCVSDCIG----TGCPVCYTPAWI----------QDLKINRQLDSMIQLC 83 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCC---SSSCCBCTTTGGGGTT----TBCSSSCCBCSC----------SSCCCCHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeC---CCCCHHHHHHHHHHhc----CCCcCCCCcCcc----------ccccccHHHHHHHHHH
Confidence 3458999999998876553 7999999999999986 579999999865 6788999988888765
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.9e-12 Score=89.53 Aligned_cols=52 Identities=27% Similarity=0.642 Sum_probs=43.0
Q ss_pred CcccccccccccccC----CeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEED----DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
++.+|+||++.|.++ .....+ +|||.||..||.+|+.. +.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh--CCCCCCCCCcCccc
Confidence 456899999999876 223334 89999999999999998 77999999998753
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.9e-12 Score=77.17 Aligned_cols=45 Identities=27% Similarity=0.659 Sum_probs=37.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC-CCCCCccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD-HHKTCPLC 141 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~~CP~C 141 (179)
.++..|+||++.+.++..+ +|||.||..||.+|+... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC----TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEe----CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3566899999999976544 799999999999999841 25679998
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.23 E-value=2e-12 Score=89.38 Aligned_cols=73 Identities=18% Similarity=0.403 Sum_probs=54.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
++..|+||++.+.++..+ +|||.||..||.+|+..+ ...||+||..+..... .........|..+.+++..+
T Consensus 14 ~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~---~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 14 SECQCGICMEILVEPVTL----PCNHTLCKPCFQSTVEKA-SLCCPFCRRRVSSWTR---YHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHHBCTTTCSBCSSCEEC----TTSCEECHHHHCCCCCTT-TSBCTTTCCBCHHHHH---HHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCCccCCcccCceeEc----CCCCHHhHHHHHHHHhHC-cCCCCCCCcccCcccc---ccccccchhhHHHHHHHHHH
Confidence 456899999999876554 799999999999999763 5689999999864210 00114667777777777665
Q ss_pred c
Q 030350 174 G 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 86 ~ 86 (115)
T 3l11_A 86 Y 86 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=8.9e-12 Score=83.27 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=55.7
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC----CCCCCcc--cccc-cccccccccCCCCCCCCCcHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD----HHKTCPL--CRAP-LLTYLQSKSLNNWPKNEPNWAV 166 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~~~CP~--CR~~-~~~~~~~~~~~~~~~~~~~~~~ 166 (179)
.+..|+||++.|.++..+. .|||+|++.||.+|+..+ ....||+ |+.. +.. ..+.+|..+
T Consensus 6 ~~~~CPI~~~~~~dPV~~~---~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~----------~~L~pn~~L 72 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNK---VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK----------SDLIQDEAL 72 (94)
T ss_dssp SCCBCTTTCSBCSSEEEES---SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG----------GGEEECHHH
T ss_pred cEeECcCcCchhcCCEEcC---CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH----------hhCcCCHHH
Confidence 4568999999999886652 499999999999999862 1357999 9877 665 678899999
Q ss_pred HHHHHHhc
Q 030350 167 ERILYIFG 174 (179)
Q Consensus 167 ~~~~~~~~ 174 (179)
++++..+-
T Consensus 73 ~~~I~~~~ 80 (94)
T 2yu4_A 73 RRAIENHN 80 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988763
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.20 E-value=8.2e-12 Score=98.34 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=57.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
....|+||++.|.+|..+ +|||+||+.||.+|+..+ ..+||+||.++.. ..+.+|..+++++..|
T Consensus 207 ~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~----------~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQ----------EQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHT-CSSCTTTCCCCCG----------GGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHC-CCCCcCCCCCCch----------hcCcccHHHHHHHHHH
Confidence 466899999999998765 799999999999999873 3449999999977 6789999999999887
Q ss_pred c
Q 030350 174 G 174 (179)
Q Consensus 174 ~ 174 (179)
-
T Consensus 272 ~ 272 (281)
T 2c2l_A 272 I 272 (281)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=74.49 Aligned_cols=44 Identities=36% Similarity=0.995 Sum_probs=36.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-CCCCCCccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-DHHKTCPLC 141 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~~~CP~C 141 (179)
++..|+||++.+.++..+ +|||.||..||.+|+.. +....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCC----SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeC----CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456899999999987543 79999999999999753 236789998
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=1.7e-11 Score=84.83 Aligned_cols=49 Identities=29% Similarity=0.627 Sum_probs=41.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++..|+||++.+.++..+ +|||.||..||.+|+... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVET----SCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEc----CCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 345899999999876553 899999999999999863 4679999999876
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=1.2e-11 Score=86.94 Aligned_cols=53 Identities=25% Similarity=0.556 Sum_probs=43.2
Q ss_pred CCcccccccccccccC---CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEED---DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.+...|+||++.+.++ .......+|||.||..||++|+.. +.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence 4566899999999874 122223389999999999999998 7899999999876
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.14 E-value=2.8e-11 Score=89.75 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=56.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHHh
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYIF 173 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (179)
....|+||++.|.+|..+ +|||+|++.||..|+..+ ..+||+||.++.. ..+.||..+++++..|
T Consensus 105 ~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~-~~tcP~t~~~l~~----------~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 105 DYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRV-GHFDPVTRSPLTQ----------DQLIPNLAMKEVIDAF 169 (179)
T ss_dssp GGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG----------GGCEECHHHHHHHHHH
T ss_pred HhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhC-CCCCCCCcCCCCh----------hhCcchHHHHHHHHHH
Confidence 566899999999998666 799999999999999873 2369999999977 6899999999998876
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.14 E-value=3.7e-11 Score=77.50 Aligned_cols=54 Identities=28% Similarity=0.547 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCe-eeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDL-VRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
.++.+|+||++.+...+. +..+ +|||.||..|+.+++... ...||.||+++...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~-~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDE-NGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSS-CSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcC-CCCCCCCCCccCCC
Confidence 356689999998865432 2212 499999999999998653 57899999998763
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.09 E-value=4e-11 Score=93.31 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=56.5
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcc--cccccccccccccCCCCCCCCCcHHHHHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPL--CRAPLLTYLQSKSLNNWPKNEPNWAVERILY 171 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~--CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (179)
.+..|+||++.|.+|.... .|||.|++.||.+|+..+....||+ ||..+.. ..+.+|..+++++.
T Consensus 180 ~el~CPIcl~~f~DPVts~---~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~----------~dL~pN~~L~~lve 246 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISR---KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM----------RDFVRDPIMELRCK 246 (267)
T ss_dssp CCSBCTTTSSBCSSEEEES---SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG----------GGEEECHHHHHHHH
T ss_pred eeeECcCccCcccCCeeeC---CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch----------hhCCcCHHHHHHHH
Confidence 5568999999999887643 7999999999999998643467999 9998877 68899999988887
Q ss_pred Hh
Q 030350 172 IF 173 (179)
Q Consensus 172 ~~ 173 (179)
.+
T Consensus 247 ~~ 248 (267)
T 3htk_C 247 IA 248 (267)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=83.63 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=41.1
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
.+...|+||++.+.++..+ +|||.||..||.+|+..+ ...||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~pv~~----~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQA----QCGHRYCSFCLASILSSG-PQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHGGGS-CEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEEC----CCCCccCHHHHHHHHhcC-CCCCCCCCCccc
Confidence 4567999999999988443 899999999999999862 358999999864
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=4.1e-11 Score=72.35 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=38.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
+...|+||++.|.++..+ +|||.||..|+..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS-----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCS----TTSCCSBTTTCSSS-----SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEc----CCCCcccHHHHccC-----CCCCCcCCcEeecC
Confidence 456899999999987544 79999999999773 56799999988763
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.9e-10 Score=84.67 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=50.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHH
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILY 171 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (179)
.+...|+||++.+.++..+ +|||.||..||.+|+..+ ...||+||.++.. ..+.++..+++++.
T Consensus 16 ~~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~----------~~~~~~~~~~~~i~ 79 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDA-GHKCPVDNEILLE----------NQLFPDNFAKREIL 79 (170)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG----------GGCEECHHHHHHHH
T ss_pred CCCCCCCCCChhhcCcEEC----CCCCHHHHHHHHHHHHhC-CCCCCCCccCcch----------hhhhhhHHHHHHHh
Confidence 4567999999999987443 899999999999999863 3489999999877 34455666666554
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.00 E-value=9.2e-11 Score=94.29 Aligned_cols=56 Identities=21% Similarity=0.513 Sum_probs=42.5
Q ss_pred CCcccccccccccccCC----eeeEccCCCCcccHHhHHHHHhcCC---------CCCCcccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDD----LVRELRNCCHVFHRECIDRWVDYDH---------HKTCPLCRAPLLTY 148 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~Fh~~Ci~~wl~~~~---------~~~CP~CR~~~~~~ 148 (179)
+...+|+||++.+.+.. .....+.|+|.||..|+.+|++... ...||+||+++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35668999999998733 2233348999999999999997621 14699999998764
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.98 E-value=2.3e-10 Score=94.04 Aligned_cols=49 Identities=20% Similarity=0.699 Sum_probs=40.6
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
..+|+||++.+.++..+ +|||.||..|+..|+... +..||+||+++...
T Consensus 332 ~~~C~ICle~~~~pv~l----pCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIE----PCGHLMCTSCLTSWQESE-GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEE----TTCCEECHHHHHHHHHHT-CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEe----CCCChhhHHHHHHHHhcC-CCCCCCCCCccCCc
Confidence 45899999998765333 899999999999999832 67899999998763
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=5.6e-10 Score=69.15 Aligned_cols=51 Identities=22% Similarity=0.543 Sum_probs=40.5
Q ss_pred CcccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
++.+|.||++...+...+ .+ +|||. |+..|+.+|... +..||+||+++...
T Consensus 7 ~~~~C~IC~~~~~~~~~~-~~-pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIV-HG-KTGHLMACFTCAKKLKKR--NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSCEEEE-ET-TEEEEEECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCCEEEE-CC-CCCChhhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence 455899999987654211 23 89999 899999999987 67899999998653
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=3.9e-10 Score=71.85 Aligned_cols=44 Identities=20% Similarity=0.603 Sum_probs=36.6
Q ss_pred cccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
+..|+||++.+.+...+ +|||. ||..|+..| ..||+||.++...
T Consensus 24 ~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV----PCGHLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCCEEEE----TTCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCCEEEc----CCCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 45899999998765443 89999 999999888 4699999998764
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.86 E-value=1.6e-09 Score=66.24 Aligned_cols=51 Identities=20% Similarity=0.491 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCeeeEccCCC--C---cccHHhHHHHHhcCCCCCCccccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCC--H---VFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
++...|.||+++..+ .+ .+ ||. + .||..|+.+|+..+.+.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCC--ce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 355689999998432 23 23 765 4 8999999999986446789999988753
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=9.9e-10 Score=67.80 Aligned_cols=51 Identities=16% Similarity=0.417 Sum_probs=40.7
Q ss_pred CcccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
....|.||++...+.. ....||||. |+..|+.+|... ...||+||+++...
T Consensus 6 ~~~~C~IC~~~~~~~~--~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN--IIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCEE--EEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCeE--EEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence 4558999999866543 222389998 999999999987 67899999998654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=2.8e-09 Score=70.86 Aligned_cols=53 Identities=21% Similarity=0.553 Sum_probs=41.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC------CCCCCcc--cccc--ccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD------HHKTCPL--CRAP--LLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~------~~~~CP~--CR~~--~~~ 147 (179)
...+|+||++++..++.+... +|||.||..|+..++... ....||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~-~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIA-QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEET-TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcC-CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 455899999999887666544 799999999999999741 1246999 9998 554
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5.2e-09 Score=66.68 Aligned_cols=43 Identities=21% Similarity=0.638 Sum_probs=35.3
Q ss_pred cccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+..|+||++.+.+...+ +|||. ||..|+.+ ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~----pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFV----PCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCS----SSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEe----cCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 44899999998776543 89999 99999953 4679999998876
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.65 E-value=3.1e-09 Score=68.56 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=35.9
Q ss_pred cccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCccccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTYL 149 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~ 149 (179)
+..|.||++.+.+... + ||||. ||..|+..| ..||+||.++....
T Consensus 18 ~~~C~IC~~~~~~~v~---~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF---C-PCGHTVCCESCAAQL------QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCCEEE---E-TTCBCCBCHHHHTTC------SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCcEEE---E-CCCCHHHHHHHHHhc------CcCCCCCchhhCeE
Confidence 3489999998766433 3 89999 999999765 37999999998754
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=63.05 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=35.9
Q ss_pred CcccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCccccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTYL 149 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~ 149 (179)
++..|.||++...+. ..+ ||||. ||..|+.. ...||+||.++....
T Consensus 14 ~~~~C~IC~~~~~~~---v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW---VLL-PCRHTCLCDGCVKY------FQQCPMCRQFVQESF 60 (68)
T ss_dssp CSSCCSSSSSSCCCC---EET-TTTBCCSCTTHHHH------CSSCTTTCCCCCCEE
T ss_pred CCCCCCCcCcCCCCE---EEE-CCCChhhhHHHHhc------CCCCCCCCcchhceE
Confidence 456899999986543 223 89999 99999972 467999999987643
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=2e-08 Score=61.46 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=40.6
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+||++.|.++.... +|||+|.+.||.+|+.. +.+||+.+.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~---~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSP---KSRTIFEKSLLEQYVKD--TGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEET---TTTEEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeC---CCCcEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence 47999999999874432 69999999999999997 6789999999866
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=5e-08 Score=79.36 Aligned_cols=45 Identities=27% Similarity=0.688 Sum_probs=37.4
Q ss_pred CcccccccccccccCCeeeEccCCCCc-ccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHV-FHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
++..|+||++.+.++..+ +|||. ||..|+..| ..||+||.++...
T Consensus 294 ~~~~C~IC~~~~~~~v~l----pCgH~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI----PCGHLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE----TTCCEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCceEEc----CCCChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 456899999998765444 89999 999999877 4699999998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.26 E-value=6.4e-07 Score=59.35 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=38.7
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQ 150 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~ 150 (179)
.|++|--.+.. ..|++ ||+|+||.+|+..|.+++ .+.||.|+.++.....
T Consensus 3 fC~~C~~Pi~i--ygRmI-PCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMI-PCKHVFCYDCAILHEKKG-DKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEE-TTCCEEEHHHHHHHHHTT-CCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeec-cccccHHHHHHHHHHhcc-CCCCcCcCCeeeeeEE
Confidence 47777655543 45555 999999999999998753 6789999999876554
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.23 E-value=6.5e-07 Score=69.24 Aligned_cols=51 Identities=16% Similarity=0.500 Sum_probs=41.7
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
....|.||.+....+.... .|+|.||..|+..|++...+..||.|+.++..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3568999999988764443 59999999999999987445689999998765
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.63 E-value=0.0079 Score=39.62 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=26.2
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHH
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWV 130 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl 130 (179)
+..|.||.+.+..+....-+ .|+|.|+..|+..+-
T Consensus 3 e~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence 45899999875444444334 899999999999843
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.61 E-value=0.0094 Score=36.48 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=34.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~~ 146 (179)
....|.||.+. ..+.....|...||..|+...+.... .=.||.|+....
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 45589999753 33545558999999999988876522 235999976543
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.52 E-value=0.011 Score=53.54 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred CcccccccccccccCCeeeEccCCC-CcccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCC-HVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYI 172 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (179)
+...|||-++.|.+|..+ +-| +.|-+.+|.+|+.. +.+||+=|.++.. ..+.||++++..+..
T Consensus 890 ~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~----------~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL----------EDVTPNEELRQKILC 953 (968)
T ss_dssp GGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG----------GGCEECHHHHHHHHH
T ss_pred HHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc----------ccccccHHHHHHHHH
Confidence 456799999999998776 676 69999999999998 7899999999987 688999999998876
Q ss_pred h
Q 030350 173 F 173 (179)
Q Consensus 173 ~ 173 (179)
|
T Consensus 954 w 954 (968)
T 3m62_A 954 F 954 (968)
T ss_dssp H
T ss_pred H
Confidence 5
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.25 E-value=0.01 Score=38.68 Aligned_cols=51 Identities=29% Similarity=0.698 Sum_probs=39.5
Q ss_pred CcccccccccccccCCeeeEccCC-CCcccHHhHHHHHhcCCCCCCcccccccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNC-CHVFHRECIDRWVDYDHHKTCPLCRAPLLTYLQSK 152 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C-~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~ 152 (179)
....|-.|+-... ..+ .| .|.+|..|+...+.. ...||+|..++.+.+...
T Consensus 27 G~~nCKsCWf~~k--~LV----~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLV----ECNNHYLCLNCLTLLLSV--SNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS--SEE----ECSSCEEEHHHHHHTCSS--SSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccC--Cee----eecchhhHHHHHHHHHhh--ccCCcccCCcCCcceecC
Confidence 4457988976643 444 36 599999999999988 889999999998865433
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.88 E-value=0.046 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC--CCCCCccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD--HHKTCPLCRA 143 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~~~CP~CR~ 143 (179)
..+..|.+|... + .+.....|...||..|+..-+... ..-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345689999873 3 444455789999999998754431 1334999965
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.91 E-value=0.078 Score=33.75 Aligned_cols=34 Identities=32% Similarity=0.704 Sum_probs=23.1
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRW 129 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 129 (179)
.++.|.||-.. ..++.. ...-|+.+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-ccccee-ccccccccccHhhcccc
Confidence 56689999643 222322 12258999999999997
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.59 E-value=0.1 Score=32.43 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=35.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC--CCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD--HHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~~~CP~CR~~~~~ 147 (179)
....|.+|..... +..+.....|...||..|+..-.... ..-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4456999987753 44455555789999999997554331 13459999876544
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.14 E-value=0.074 Score=38.92 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=33.9
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~~ 146 (179)
.++.|.+|... ++ +.....|...||..|+..-+.... .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34579999854 43 545557999999999877665411 234999987543
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.10 E-value=0.081 Score=39.50 Aligned_cols=49 Identities=29% Similarity=0.359 Sum_probs=34.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~~ 146 (179)
.+..|.+|... ..+.....|...||..|+..-+.... .-.||.|+..-.
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45679999743 34555668999999999977665421 235999987543
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=89.84 E-value=0.26 Score=29.81 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=26.6
Q ss_pred CcccccccccccccCCeeeEcc-CCCCcccHHhHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELR-NCCHVFHRECID 127 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~ 127 (179)
....|.+|...+.+....+... .|...||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4457999999988777766666 799999999973
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.31 E-value=0.19 Score=28.65 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=29.8
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRA 143 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~ 143 (179)
.|.||...-.. ..+.....|...||..|+..=+.... .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888765433 34444558999999999975443311 234999864
No 84
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=89.29 E-value=2 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 030350 1 MGFFEDDPTLITSQFLYRAAVVIALLRWVLF 31 (179)
Q Consensus 1 ~gf~~~~~~~~i~~~i~~~~i~i~v~~~i~~ 31 (179)
||-|......+|..-++..+++++++..+++
T Consensus 1 ~~~~~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 1 MGLPGRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655444444444444444444444443
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.25 E-value=0.088 Score=31.45 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=31.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~ 145 (179)
.+..|.+|.+. + .+.....|...||..|+..-+.... .=.||.|+...
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45579999853 3 3444447889999999976444311 23499997643
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.22 E-value=0.053 Score=31.78 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=30.8
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRA 143 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~ 143 (179)
..+..|.+|... + .+.....|...||..|+..-+.... .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456689999874 3 4444557899999999975443311 223887753
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.08 E-value=0.25 Score=29.55 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=35.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc---CCCCCCccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY---DHHKTCPLCRA 143 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~~CP~CR~ 143 (179)
.+...|++|...+.++........|...||..|+.--... .....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3455799999988655555555578999999998543221 12456999965
No 88
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.26 Score=40.04 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=45.5
Q ss_pred cccccccccccccCCeeeEccCCCCc--ccHHhHHHHHhcCCCCCCcccccccccccccccCCCCCCCCCcHHHHHHHHH
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHV--FHRECIDRWVDYDHHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERILYI 172 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (179)
...|++-...+..+.+-. .|.|. |-..-+...-.+...-.||+|.+.+.. ..+....-+.+++..
T Consensus 249 SL~CPlS~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~----------~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL----------ENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG----------GGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccCH----------HHeeEcHHHHHHHHh
Confidence 457999888888776554 89997 665555555444345569999988765 456666666666555
Q ss_pred hc
Q 030350 173 FG 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 316 ~~ 317 (371)
T 3i2d_A 316 CQ 317 (371)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.95 E-value=0.22 Score=30.72 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCccccccccccc-ccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccc
Q 030350 93 WVPDTCAVCLNHM-EEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRA 143 (179)
Q Consensus 93 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~ 143 (179)
..+..|.||.+.- .++..+.....|.-.||..|+..-..-...=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3566899998763 34455666668999999999864322111334888865
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.23 E-value=1.7 Score=27.31 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=47.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC---CCCCCcccccccccccccccCCCCCCCCCcHHHHHH
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD---HHKTCPLCRAPLLTYLQSKSLNNWPKNEPNWAVERI 169 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~---~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (179)
.....|.+|.+.+++..-+..-..=.|.||..|-...++.. ....||.=.+-... -+.++|+..+- +|
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~----gS~~PWAFmqg-----EI 83 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLV----GSNVPWAFMQG-----EI 83 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCS----SSSSBCCCCHH-----HH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccC----CCcCchHHHhh-----HH
Confidence 45668999999999988774111126999999999888762 12236655432222 23567777654 34
Q ss_pred HHHhcCC
Q 030350 170 LYIFGDD 176 (179)
Q Consensus 170 ~~~~~~~ 176 (179)
...-|+|
T Consensus 84 atILg~~ 90 (93)
T 2cs3_A 84 ATILSGP 90 (93)
T ss_dssp HHHHSCS
T ss_pred HHHhccc
Confidence 4444554
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.11 E-value=0.84 Score=28.47 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=34.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc---CCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY---DHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~~CP~CR~~~~~ 147 (179)
....| ||...+...........|...||..|+.---.. .....||.|+....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 33456 898887544444445579999999998532211 125669999876543
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.04 E-value=1 Score=31.53 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCCcccccccccccccCCeeeEccCCCCcccHHhHHHHHh---------cCCCCCCccccc
Q 030350 92 PWVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD---------YDHHKTCPLCRA 143 (179)
Q Consensus 92 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---------~~~~~~CP~CR~ 143 (179)
...++.|.+|-+. ++ +.....|-..||..||.+-+. ....=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999865 44 445557999999999997663 112345999964
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.45 E-value=0.27 Score=31.63 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=35.9
Q ss_pred Cccccccccccc-ccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHM-EEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.+..|.||...- .++..+.....|.-.||..|+..-..-...=.||.|......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 456899998763 334456666689999999999653322123459999765543
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=86.05 E-value=0.087 Score=31.28 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=32.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~~ 146 (179)
.+..|.+|... + .+.....|...||..|+..-+.... .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35589999874 3 3444558999999999975444311 234999966543
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.67 E-value=0.56 Score=30.15 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAP 144 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~ 144 (179)
..+..|.+|... + .+.....|...||..|+.+=+..-. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 356689999864 3 3444557889999999977654411 2349999754
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.53 E-value=0.45 Score=28.50 Aligned_cols=53 Identities=17% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCcccccccccccc-cCCeeeEccCCCCcccHHhHHHHHh-----cCCCCCCccccccc
Q 030350 93 WVPDTCAVCLNHME-EDDLVRELRNCCHVFHRECIDRWVD-----YDHHKTCPLCRAPL 145 (179)
Q Consensus 93 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci~~wl~-----~~~~~~CP~CR~~~ 145 (179)
..+..|.+|..... ++..+.....|...||..|+..-+. ....=.|+.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45668999998643 3345555668999999999875332 11134588886543
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.43 E-value=0.12 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAP 144 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~ 144 (179)
..+..|.||.+. + .+.....|...||..|+..-+..-. .-.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345689999864 3 3444557899999999975443311 2349999654
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.21 E-value=0.25 Score=35.62 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=33.5
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHh---cCCCCCCcccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD---YDHHKTCPLCRAP 144 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~~~CP~CR~~ 144 (179)
....| +|.....++........|...||..|+.--.. ....-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34578 99988755555555568999999999842211 1124569999864
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.70 E-value=0.26 Score=33.07 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=30.7
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRA 143 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~ 143 (179)
.|.+|...-.++..+.....|...||..|+..-+..-. .=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788765333344555557999999999876554421 234898874
No 100
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=84.10 E-value=0.22 Score=36.63 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=31.7
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC--CCCCCccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD--HHKTCPLCRAPL 145 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~~~CP~CR~~~ 145 (179)
++.|.+|.+. ++ +.....|...||..|+..=+... ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999854 34 44444788999999997654431 123499998753
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.74 E-value=0.23 Score=28.55 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=29.9
Q ss_pred cccccccccccCCeeeEcc-CCCCcccHHhHHHHHhc--CCCCCCcccc
Q 030350 97 TCAVCLNHMEEDDLVRELR-NCCHVFHRECIDRWVDY--DHHKTCPLCR 142 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl~~--~~~~~CP~CR 142 (179)
.|.+|...+.++....... .|..-||..|+.--... .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888886665555555 58889999997432110 1256688885
No 102
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.77 E-value=0.84 Score=36.96 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=36.3
Q ss_pred cccccccccccccCCeeeEccCCCCc--ccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHV--FHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|++-...+..+.+-. .|.|. |-..-+.....+...-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~---~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAV---TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEET---TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcCC---CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 447999888888776554 89997 666655555555445569999998764
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.38 E-value=0.16 Score=33.01 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=33.4
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCC--CCCCcccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDH--HKTCPLCRAP 144 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~ 144 (179)
++..|.||...-.. ..+.....|...||..|+..=+..-. .=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45579999877433 34555558999999999975443311 2349999764
No 104
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.57 E-value=0.63 Score=34.07 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=35.1
Q ss_pred ccccccccccccCCe---eeEccCCCCcccHHhHHHH------Hhc---CCCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDDL---VRELRNCCHVFHRECIDRW------VDY---DHHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~---~~~l~~C~H~Fh~~Ci~~w------l~~---~~~~~CP~CR~~~~ 146 (179)
..|+||...|.+++. ......|...||..|+.-- +.. ...-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 379999999988763 5555689999999997321 110 01457999987543
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=81.23 E-value=0.87 Score=30.16 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=34.4
Q ss_pred ccccccccccccCCeeeEcc-CCCCcccHHhHHHHHh--------cCCCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELR-NCCHVFHRECIDRWVD--------YDHHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl~--------~~~~~~CP~CR~~~~ 146 (179)
..|.||...+.+........ .|...||..|+.---. ....-.||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 47999999986655555553 6889999999742210 001456999987544
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.00 E-value=0.61 Score=30.50 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=30.4
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-CCCCCCccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-DHHKTCPLCRA 143 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~~~CP~CR~ 143 (179)
..| ||-.....+. +.....|...||..|+..-... ...-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8877665554 4445589999999998643222 11346999974
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.90 E-value=0.98 Score=28.41 Aligned_cols=53 Identities=23% Similarity=0.517 Sum_probs=34.1
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhc----CCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY----DHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~~~~~CP~CR~~~~~ 147 (179)
...|.+|...|..-..-.....||.+||..|....+.. .....|-.|-..+..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 34799999999765444444589999999997543211 112347777555544
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.80 E-value=2.4 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=23.9
Q ss_pred ccccccccccc-----ccCCeeeEccCCCCcccHHhHH
Q 030350 95 PDTCAVCLNHM-----EEDDLVRELRNCCHVFHRECID 127 (179)
Q Consensus 95 ~~~C~ICl~~~-----~~~~~~~~l~~C~H~Fh~~Ci~ 127 (179)
...|.+|+..- ..++.+.....|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 34799998763 2234555556899999999995
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.32 E-value=3.7 Score=26.29 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=38.2
Q ss_pred Ccccccccccccc---cCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHME---EDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
....|.||-++.- +++.......|+--.|+.|++-=.+.+ +..||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG-~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG-TQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS-CSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc-CccccccCCcccc
Confidence 3458999998853 343334344788789999997666654 7889999998864
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.08 E-value=0.42 Score=32.14 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=24.2
Q ss_pred ccccccccccc------cCCeeeEccCCCCcccHHhHHHH
Q 030350 96 DTCAVCLNHME------EDDLVRELRNCCHVFHRECIDRW 129 (179)
Q Consensus 96 ~~C~ICl~~~~------~~~~~~~l~~C~H~Fh~~Ci~~w 129 (179)
+.|.+|+..-. ++..+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36999987641 23455555689999999998754
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=79.30 E-value=3.5 Score=28.31 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHH------h---cCCCCCCccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWV------D---YDHHKTCPLCRA 143 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl------~---~~~~~~CP~CR~ 143 (179)
..++.|.+|-+. ..+.....|-..||..||.+-+ . ....=.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456679999864 4454455789999999999752 1 111345999944
No 112
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.11 E-value=0.59 Score=31.07 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCcccccccccccccCCeeeEccCCCCcccHHhHHHHHh
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD 131 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~ 131 (179)
..++.|.+|.+.=... .+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 3566899998763222 2334458999999999987664
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.83 E-value=0.26 Score=33.66 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=32.8
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~ 145 (179)
...|..|-..|..-..-.....||.+||..|....... .+.|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~--vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG--PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC--ceECHHHHHHH
Confidence 34899999998764444444589999999997665544 56788885543
No 114
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.82 E-value=1.6 Score=27.85 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=36.5
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-----CCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-----DHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~~~CP~CR~~~~~ 147 (179)
+...|.+|...|..-..-.....||++||..|....... .....|-.|-..+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 445899999998865544444589999999997553311 113558888766654
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.50 E-value=0.48 Score=29.01 Aligned_cols=46 Identities=26% Similarity=0.537 Sum_probs=28.9
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCC---CCccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHK---TCPLCRA 143 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~---~CP~CR~ 143 (179)
.|.+|...-. +..+.....|...||..|+..=+...... .||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4567765432 33444555789999999997554432222 4888865
No 116
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=78.09 E-value=1.5 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRW 129 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 129 (179)
+...|.+|...|..-..-.....||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999999765544444589999999996544
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=77.82 E-value=1.5 Score=26.81 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=24.3
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHH
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECID 127 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~ 127 (179)
..|.+|...|.--..-.....||++|+..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999999987654434444799999999964
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.44 E-value=1.4 Score=30.08 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=25.4
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHH
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDR 128 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 128 (179)
...|.+|...|..-..-.....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3479999999976544444458999999999643
No 119
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.38 E-value=1.3 Score=26.22 Aligned_cols=42 Identities=26% Similarity=0.576 Sum_probs=29.4
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLC 141 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~C 141 (179)
.|.-|...+.+.. .-..+.|++.|+.+| .-+....-..||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dC--D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDC--DVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHH--HHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccch--hHHHHhhccCCcCC
Confidence 6999999986433 234668999999999 33433334569988
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.18 E-value=0.48 Score=29.64 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=30.0
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCC---CCCccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHH---KTCPLCRA 143 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~---~~CP~CR~ 143 (179)
.|.||...-.. ..+.....|...||..|+..=+..... =.||.|+.
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888865333 344455589999999999754443222 24888864
No 121
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=76.77 E-value=0.99 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=20.5
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhH
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECI 126 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci 126 (179)
+.|+.|-...-..+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 37999988876666554 45788998884
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.74 E-value=1.8 Score=27.73 Aligned_cols=53 Identities=19% Similarity=0.446 Sum_probs=34.7
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC----CCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD----HHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~~~CP~CR~~~~~ 147 (179)
...|.+|...|.--..-.....||++||..|...+.... ....|-.|-..+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 347999999987654444445899999999976554211 13447777555443
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.35 E-value=0.66 Score=28.20 Aligned_cols=48 Identities=21% Similarity=0.401 Sum_probs=30.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-CCCCCCccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-DHHKTCPLCRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~~~CP~CR~ 143 (179)
+...| ||-.... +........|...||..|+.---.. ...-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44568 9987765 3334445578999999998532211 12445888864
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.32 E-value=1.8 Score=32.52 Aligned_cols=36 Identities=17% Similarity=0.460 Sum_probs=27.1
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRW 129 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 129 (179)
.+..|.+|...|.--..-.....||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 445899999998865444445589999999996543
No 125
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.09 E-value=0.5 Score=29.55 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=28.9
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCC---CCCccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHH---KTCPLCRA 143 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~---~~CP~CR~ 143 (179)
.|.+|...-. +..+.....|...||..|+..-+..... =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666665533 3345445578899999999866544211 35888875
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.08 E-value=2.4 Score=28.14 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCcccccccccccccCCeeeEcc--CCCCcccHHhHHHHHhcCC--CCCCccccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELR--NCCHVFHRECIDRWVDYDH--HKTCPLCRAPL 145 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~~~--~~~CP~CR~~~ 145 (179)
..++.|.+|.+ +..+.... .|...||..|+. +.... .-.||.|+-..
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 45668999983 23454443 588999999997 44311 12377665443
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.73 E-value=1.8 Score=27.21 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=25.3
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDR 128 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 128 (179)
+...|.+|...|..-..-.....||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34479999999865444333447999999999543
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.80 E-value=1.5 Score=32.82 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=26.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDR 128 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 128 (179)
.+..|.+|...|.--..-.....||++||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34689999999876544444558999999999643
No 129
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=72.66 E-value=1.5 Score=28.70 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=11.0
Q ss_pred ccHHhHHHHHhc
Q 030350 121 FHRECIDRWVDY 132 (179)
Q Consensus 121 Fh~~Ci~~wl~~ 132 (179)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999965
No 130
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.60 E-value=1.5 Score=28.64 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=11.0
Q ss_pred ccHHhHHHHHhc
Q 030350 121 FHRECIDRWVDY 132 (179)
Q Consensus 121 Fh~~Ci~~wl~~ 132 (179)
||+.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 131
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.01 E-value=0.83 Score=34.59 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=27.7
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCC---CCcccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHK---TCPLCRAP 144 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~---~CP~CR~~ 144 (179)
.|.+|...-. +..+.....|...||..|+..=+..-... .||.|+.+
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5888876432 33444556899999999998655442222 49999653
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.81 E-value=2.1 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=30.8
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+.|-..+..++.+. .-+..||..|+ .|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF----------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFCL----------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTTC----------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCCC----------CCCCCCCccCC
Confidence 458999999988766655 35778998874 69999888864
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.59 E-value=2 Score=29.71 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=24.3
Q ss_pred CCcccccccccccc-cCCeeeEccCCCCcccHHhH
Q 030350 93 WVPDTCAVCLNHME-EDDLVRELRNCCHVFHRECI 126 (179)
Q Consensus 93 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci 126 (179)
..+..|.+|...|. ....-+....|+|.+|..|=
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 35568999999983 33333445589999999884
No 134
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.04 E-value=2.7 Score=26.04 Aligned_cols=41 Identities=34% Similarity=0.676 Sum_probs=29.6
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
....|+.|-..+...+.+. .-+..||..|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF----------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSCF----------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC----------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCcC----------EEcCCCCCcCC
Confidence 3458999999887666554 35678998884 57788777654
No 135
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.36 E-value=12 Score=20.58 Aligned_cols=10 Identities=0% Similarity=-0.018 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 030350 13 SQFLYRAAVV 22 (179)
Q Consensus 13 ~~~i~~~~i~ 22 (179)
.-++..++++
T Consensus 14 ~gVVgGv~~v 23 (44)
T 2l2t_A 14 AGVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHHH
T ss_pred EeehHHHHHH
Confidence 3334333333
No 136
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=68.28 E-value=17 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030350 14 QFLYRAAVVIALLRWVLFCIIRFRNRNS 41 (179)
Q Consensus 14 ~~i~~~~i~i~v~~~i~~~~~~~~~~~~ 41 (179)
.++.+++.++.++.+.+++-.+++.+++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrr 39 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRR 39 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455554444444444444445555554
No 137
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.75 E-value=2 Score=25.31 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=27.0
Q ss_pred CcccccccccccccCCeeeEccC--CC-CcccHHhHHHHHhcC--CCCCCccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN--CC-HVFHRECIDRWVDYD--HHKTCPLCRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~--~~~~CP~CR~ 143 (179)
+..-| ||..... + .+..... |. ..||..|+. +... ..-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8987642 3 3443445 55 689999997 4331 2345888854
No 138
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=66.30 E-value=1.2 Score=36.44 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhc-----CCCCCCccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-----DHHKTCPLCRAPL 145 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~~~CP~CR~~~ 145 (179)
...|.+|...|.--..-..+..||++||..|-...+.- ...+.|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999988754333334479999999998766522 1134577775443
No 139
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.17 E-value=5 Score=25.20 Aligned_cols=40 Identities=25% Similarity=0.555 Sum_probs=29.6
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+...+.+. .-+..||..|+ .|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF----------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF----------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC----------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC----------eeCCCCCCCCC
Confidence 448999999887766554 46788998874 58888777765
No 140
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.17 E-value=12 Score=20.61 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHH
Q 030350 10 LITSQFLYRAAVVIA 24 (179)
Q Consensus 10 ~~i~~~i~~~~i~i~ 24 (179)
.+..-++..+++++.
T Consensus 12 ~IA~gVVgGv~~~~i 26 (44)
T 2ks1_B 12 SIATGMVGALLLLLV 26 (44)
T ss_dssp SSTHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHH
Confidence 344444444444443
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.14 E-value=3.2 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=29.9
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
....|+-|-..+..++.+. .-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF----------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL---ALDKQWHVSCF----------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE---ETTEEECTTTC----------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE---ECCcccccccC----------CcCcCCCCcC
Confidence 3458999999887666655 34678998874 6888988775
No 142
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.04 E-value=1.7 Score=28.01 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=28.5
Q ss_pred CcccccccccccccCCeeeEccC--CC-CcccHHhHHHHHhcC--CCCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN--CC-HVFHRECIDRWVDYD--HHKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~--~~~~CP~CR~~~ 145 (179)
+..-| ||..... +. +..... |. ..||..|+. +... ..-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34457 9987643 33 333334 55 689999996 3321 234599997643
No 143
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.98 E-value=2.8 Score=25.57 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=28.6
Q ss_pred CcccccccccccccCCeeeEccC--CC-CcccHHhHHHHHhcC--CCCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN--CC-HVFHRECIDRWVDYD--HHKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~--~~~~CP~CR~~~ 145 (179)
+..-| ||..... +. +..... |. ..||..|+. +... ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34467 8987642 43 333334 65 689999997 3331 234599997643
No 144
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.35 E-value=3.2 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=36.0
Q ss_pred ccccccccccccc-CCeeeEccCCCCcccHHhHHHHHhc------CCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEE-DDLVRELRNCCHVFHRECIDRWVDY------DHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~~------~~~~~CP~CR~~~~~ 147 (179)
+..|.+|...-.. +..+.....|...||..|+..-+.. ...=.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4579999976432 3455556689999999999865531 113459999775543
No 145
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.92 E-value=4 Score=24.74 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=32.8
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHh--cCCCCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD--YDHHKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~--~~~~~~CP~CR~~~ 145 (179)
....| ||-....++........|...||..|+.---. ......||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34468 79887665554555557899999999853321 11245699997643
No 146
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=61.67 E-value=1.6 Score=25.65 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=27.6
Q ss_pred CcccccccccccccCCeeeEccC--CC-CcccHHhHHHHHhcC--CCCCCccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN--CC-HVFHRECIDRWVDYD--HHKTCPLCRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~--~~~~CP~CR~ 143 (179)
+..-| ||.... .+ .+..... |. ..||..|+. +... ..-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34457 898764 23 3444445 66 699999997 3331 1345998864
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.56 E-value=5.4 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=24.3
Q ss_pred CcccccccccccccCCeeeEccCC-CCcccHHhHHHHH
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNC-CHVFHRECIDRWV 130 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C-~H~Fh~~Ci~~wl 130 (179)
+..-|.||.++ ..++.+ .| +-.||..|+..-=
T Consensus 7 e~pWC~ICneD----AtlrC~-gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCA-GCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC----CCEEET-TTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCC----CeEEec-CCCCceehHHHHHHHc
Confidence 44569999887 556666 89 7899999976653
No 148
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.54 E-value=4.2 Score=24.12 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=28.1
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+...+.+.. .-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF----------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETCF----------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTTT----------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccCC----------cccccCCccCC
Confidence 379999998887543322 25678898874 58888887754
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.49 E-value=4.1 Score=24.14 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=28.3
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+...+.+.. .-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF----------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHCF----------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTTC----------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCcccC----------eECCCCCcCCC
Confidence 479999998886433321 35788998874 68888887754
No 150
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=61.28 E-value=1.8 Score=26.60 Aligned_cols=40 Identities=28% Similarity=0.580 Sum_probs=28.8
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+.|-..+..++.+. .-+..||..|+ .|-.|+.+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCCF----------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSSE----------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE---eCCcccccccC----------ccCCCCCCCCC
Confidence 348999999887666554 35678888774 58888887754
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.36 E-value=2.8 Score=25.34 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=4.2
Q ss_pred cccccccccc
Q 030350 97 TCAVCLNHME 106 (179)
Q Consensus 97 ~C~ICl~~~~ 106 (179)
.|..|...+.
T Consensus 29 ~C~~C~~~L~ 38 (76)
T 1iml_A 29 KCEKCGKTLT 38 (76)
T ss_dssp BCTTTCCBCC
T ss_pred CccccCccCC
Confidence 3444444433
No 152
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.84 E-value=6 Score=23.72 Aligned_cols=41 Identities=17% Similarity=0.542 Sum_probs=28.9
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+...+.+.. .-+..||..|+ .|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF----------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF----------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE--ETTEEECTTTC----------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEE--eCccEeccccC----------eECCCCCCCCC
Confidence 4589999998875443321 25678998874 68888888765
No 153
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.73 E-value=6.1 Score=24.07 Aligned_cols=40 Identities=28% Similarity=0.607 Sum_probs=29.1
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+..++.+.. .-+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF----------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDCF----------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTTC----------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE--ECccccccccC----------chhhCCCccCC
Confidence 489999998886554322 35778998874 68889887765
No 154
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=57.34 E-value=4.6 Score=23.53 Aligned_cols=38 Identities=26% Similarity=0.625 Sum_probs=27.9
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+. +..+. .-+..||..|+ .|..|+.++..
T Consensus 6 ~~C~~C~~~I~-~~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN---AMGKQWHVEHF----------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEEC---CTTSBEETTTC----------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEEE---ECccccccCcC----------EECCCCCCCCC
Confidence 47999998887 44443 45778998874 68899888764
No 155
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.06 E-value=8.1 Score=23.53 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=28.0
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+. +..+. .-+..||..| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C----------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH----------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT----------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC----------CEeCCCCCccCC
Confidence 457999998887 33343 4577888877 368888887764
No 156
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.91 E-value=12 Score=22.80 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=30.8
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHh-------cCCCCCCccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD-------YDHHKTCPLCRAPL 145 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-------~~~~~~CP~CR~~~ 145 (179)
..| ||......+ .......|...||..|+.--.. ......||.|+..-
T Consensus 17 ~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 457 898876543 3444447899999999842111 11267799997644
No 157
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.90 E-value=11 Score=26.77 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=32.7
Q ss_pred CCcccccccccccccCCeeeEcc--CCCCcccHHhHHHHHhcC--------CCCCCcccccc
Q 030350 93 WVPDTCAVCLNHMEEDDLVRELR--NCCHVFHRECIDRWVDYD--------HHKTCPLCRAP 144 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~~--------~~~~CP~CR~~ 144 (179)
+.+..|.||-+. ..+.... .|...||..||+..+-.+ ..=.|=+|.-.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 455678888753 4555554 688999999999998542 12238888543
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=56.72 E-value=4 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=29.9
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
...|+-|-..+.....+. .-+..||..|+ .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF----------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL----------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS----------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc----------CcCcCCCccc
Confidence 357999999887655454 36788998884 6999998886
No 159
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=56.14 E-value=23 Score=19.41 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 030350 29 VLFCIIRFR 37 (179)
Q Consensus 29 i~~~~~~~~ 37 (179)
++++++|.+
T Consensus 30 ~~~~~~RRR 38 (44)
T 2jwa_A 30 VFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHhheehh
Confidence 333343433
No 160
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=55.98 E-value=6.4 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.542 Sum_probs=29.9
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+...+.+.. .-+..||..|+ .|-.|..++..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF----------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF----------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTS----------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCC----------cccCCCCCCCC
Confidence 3489999999887665432 25677998884 58899888765
No 161
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=55.34 E-value=2.3 Score=25.25 Aligned_cols=45 Identities=29% Similarity=0.643 Sum_probs=27.3
Q ss_pred CcccccccccccccCCeeeEccC--CC-CcccHHhHHHHHhcC--CCCCCccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRN--CC-HVFHRECIDRWVDYD--HHKTCPLCRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~--~~~~CP~CR~ 143 (179)
+..-| +|.... .+ ....... |. ..||..|+. +... ..-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34457 898763 34 3444445 55 799999986 3221 1345998865
No 162
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=55.25 E-value=12 Score=22.81 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=30.8
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhc---CCCCCCccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY---DHHKTCPLCRAPL 145 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~~CP~CR~~~ 145 (179)
.| ||-..+..+........|.-.||..|+.---.. ...-.||.|+..-
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 44 888776544445545578999999998533211 0145699997654
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.78 E-value=5.9 Score=23.34 Aligned_cols=39 Identities=23% Similarity=0.631 Sum_probs=27.4
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+.. ..+. .-+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPECF----------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTTS----------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccCC----------EeCCCCCcCCC
Confidence 3479999888774 3333 35678888874 68888887765
No 164
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.92 E-value=8.2 Score=22.82 Aligned_cols=39 Identities=23% Similarity=0.581 Sum_probs=27.8
Q ss_pred cccccccccccc--C-CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEE--D-DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~--~-~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+.. . ..+. .-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~---a~~~~wH~~CF----------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS---FEERQWHNDCF----------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE---CSSCEECTTTC----------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEE---ECCcccCcccC----------EeccCCCcCCC
Confidence 479999988875 2 3333 36788998874 68889887753
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.92 E-value=8.4 Score=22.74 Aligned_cols=38 Identities=34% Similarity=0.612 Sum_probs=25.9
Q ss_pred ccccccccccccCC-eeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDD-LVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
..|+.|-..+...+ .+. .-+..||..|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~---a~~~~~H~~CF----------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV---ALDRVFHVGCF----------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE---CSSSEECTTTC----------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEE---ECCCeEcccCC----------cccccCCcCC
Confidence 47888888776533 333 35678888773 5888888774
No 166
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.70 E-value=9.4 Score=23.11 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.6
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+... .+. .-+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPECY----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTTT----------SCSSSCCCHHH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCcC----------eeCCCCCCCCC
Confidence 34899999988753 333 46788998884 58889887753
No 167
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.55 E-value=13 Score=23.02 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=28.9
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+.. ..+. .-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPECF----------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTTC----------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccCC----------EecCCCCCCCC
Confidence 4489999988875 3333 46788998884 68899888765
No 168
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.84 E-value=7.9 Score=23.24 Aligned_cols=39 Identities=21% Similarity=0.560 Sum_probs=27.1
Q ss_pred cccccccccccc--C-CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEE--D-DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~--~-~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+.. . ..+. .-+..||..|+ .|..|+.+|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~---a~~~~wH~~CF----------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC---FQDSQWHSECF----------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE---ETTEEEEGGGC----------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEE---ECCcccCcccC----------ChhhCCCcCCC
Confidence 379999988775 2 3333 35678998884 58888877753
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=51.48 E-value=17 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030350 12 TSQFLYRAAVVIALLRWVLFC 32 (179)
Q Consensus 12 i~~~i~~~~i~i~v~~~i~~~ 32 (179)
|.-+++..++.++++..+.++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 170
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=50.99 E-value=2.9 Score=23.63 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=25.9
Q ss_pred ccccccccCCeeeEccCCCCcccHHhHHHHHhc-CCCCCCccccc
Q 030350 100 VCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY-DHHKTCPLCRA 143 (179)
Q Consensus 100 ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~~~CP~CR~ 143 (179)
||..... +........|+.-||..|+.---.. ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 3344444478999999998532221 12456888864
No 171
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.81 E-value=13 Score=24.62 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=30.4
Q ss_pred cccccccccccc-CCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEE-DDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|..|-..+.+ +.... . .=+..||..|..+-+.. ...|..|..++..
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGN--SGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCC--CCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCC--CCccccCCCCcCc
Confidence 357777766642 11111 1 34667888888877654 4479999888875
No 172
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=49.23 E-value=14 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030350 10 LITSQFLYRAAVVIALLRWVLFCIIRFR 37 (179)
Q Consensus 10 ~~i~~~i~~~~i~i~v~~~i~~~~~~~~ 37 (179)
+....+|+.++..+.++....++++|..
T Consensus 14 vvtv~viliavaalg~li~gcwcylrlq 41 (90)
T 1zza_A 14 VVTVIVILIAIAALGALILGCWCYLRLQ 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred eEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555544444444433
No 173
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.00 E-value=9.6 Score=22.31 Aligned_cols=38 Identities=26% Similarity=0.595 Sum_probs=27.5
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+... .+. .-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~-~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTG-GVT---YREQPWHKECF----------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSS-EEE---SSSSEEETTTS----------BCSSSCCBCTT
T ss_pred CCCcccCCeeccc-eEE---ECccccCCCCC----------ccCCCCCcCCc
Confidence 4799998888643 333 46788998874 68889888754
No 174
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.12 E-value=8 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=27.1
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+. +..+. .-+..||..|+ .|-.|+.+|.+
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPECF----------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTSC----------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEEE---ECCceeccccC----------CccCCCCccCC
Confidence 37999988877 33333 45778898773 68889888753
No 175
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.94 E-value=14 Score=30.16 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=31.8
Q ss_pred CcccccccccccccCCeeeEcc--CCCCcccHHhHHHHHhcC--------CCCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELR--NCCHVFHRECIDRWVDYD--------HHKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~~--------~~~~CP~CR~~~ 145 (179)
.+..|.+|-+. ..+.... .|...||..||+..+-.+ ..=.|=+|.-.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 45568887653 3444444 788999999999998331 123488886543
No 176
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.76 E-value=2.5 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=10.9
Q ss_pred cccccccccccccCCee
Q 030350 95 PDTCAVCLNHMEEDDLV 111 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~ 111 (179)
...||+|+..+...+.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 35677887777665444
No 177
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=7.3 Score=24.31 Aligned_cols=39 Identities=18% Similarity=0.447 Sum_probs=28.6
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
...|+-|-..+. +..+. .-+..||..|+ .|-.|+.+|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF----------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEEF----------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTTC----------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccCC----------ccCCCCCCCCC
Confidence 448999999885 34443 35788998874 68999888864
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.80 E-value=7.2 Score=26.00 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=16.3
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHh
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVD 131 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~ 131 (179)
.|..|-..+..++.... .=+..||..|..+.+.
T Consensus 38 ~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 38 KCAACQKHFSVGDRYLL--INSDIVCEQDIYEWTK 70 (123)
T ss_dssp BCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHHH
T ss_pred ccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHhc
Confidence 45566555543332211 2355566666655554
No 179
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.51 E-value=7.6 Score=23.63 Aligned_cols=37 Identities=27% Similarity=0.786 Sum_probs=26.6
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.|+.|-..+.. ..+. .-+..||..|+ .|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~-~~v~---a~~~~wH~~CF----------~C~~C~~~L~~ 53 (81)
T 1v6g_A 17 RCFSCDQFIEG-EVVS---ALGKTYHPDCF----------VCAVCRLPFPP 53 (81)
T ss_dssp BCTTTCCBCCS-CCEE---ETTEEECTTTS----------SCSSSCCCCCS
T ss_pred cCccccCEecc-ceEE---ECCceeCccCC----------ccccCCCCCCC
Confidence 79999988773 4443 35778998874 58888877753
No 180
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.13 E-value=11 Score=24.59 Aligned_cols=13 Identities=15% Similarity=-0.112 Sum_probs=6.4
Q ss_pred CCcccHHhHHHHH
Q 030350 118 CHVFHRECIDRWV 130 (179)
Q Consensus 118 ~H~Fh~~Ci~~wl 130 (179)
+..||..|..+-+
T Consensus 52 g~~yC~~~y~~~f 64 (114)
T 1j2o_A 52 GRKLCRRDYLRLG 64 (114)
T ss_dssp TBCCCHHHHHHHH
T ss_pred CeeechHHHHHHh
Confidence 3445555554444
No 181
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.60 E-value=4.3 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.694 Sum_probs=16.8
Q ss_pred CCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 116 NCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 116 ~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.||+.|. .-+ ++...||.|+.+...
T Consensus 72 ~CG~~F~-----~~~--~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEI--NIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCS--SCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccC--CCCCCCcCCCCCccC
Confidence 7999991 111 225679999987665
No 182
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=44.48 E-value=48 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=19.2
Q ss_pred CCCCcccHHhHH------HHHhc---CCCCCCccccccc
Q 030350 116 NCCHVFHRECID------RWVDY---DHHKTCPLCRAPL 145 (179)
Q Consensus 116 ~C~H~Fh~~Ci~------~wl~~---~~~~~CP~CR~~~ 145 (179)
.|+..||..|+. .-+.. .....||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 689999999951 22222 1246799997543
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.42 E-value=13 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=31.5
Q ss_pred CcccccccccccccCC-eeeEccCCCCcccHHhHHHHHhcCCCCCCcccccc
Q 030350 94 VPDTCAVCLNHMEEDD-LVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAP 144 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~ 144 (179)
.+..|++|...|.--. .-.....|+|.+|..|= .|......-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 5668999999864321 22334489999999995 23333222338888664
No 184
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=43.38 E-value=6.3 Score=19.50 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=10.1
Q ss_pred CCCCccccccccc
Q 030350 135 HKTCPLCRAPLLT 147 (179)
Q Consensus 135 ~~~CP~CR~~~~~ 147 (179)
+..||.|+....+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4579999887766
No 185
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=41.31 E-value=44 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=15.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030350 6 DDPTLITSQFLYRAAVVIALLRWVLFCIIRFR 37 (179)
Q Consensus 6 ~~~~~~i~~~i~~~~i~i~v~~~i~~~~~~~~ 37 (179)
+|-.+-+.-+++++++++..+..++.--.+.+
T Consensus 13 DY~tLRigGLifA~vLfi~GI~iilS~kcrCk 44 (67)
T 2jp3_A 13 DWESLQLGGLIFGGLLCIAGIALALSGKCKCR 44 (67)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHheecchhhHHHHHHHHHHHHHcCccccc
Confidence 44444455566665555555444444333443
No 186
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=40.81 E-value=11 Score=31.44 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=32.5
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhc---CCCCCCccccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDY---DHHKTCPLCRAPLLT 147 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~~CP~CR~~~~~ 147 (179)
...+|...+..+.....+..|.-.||..|+.---.. ...-.||.|+..-..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 444888876544455555579999999998421111 014569999875544
No 187
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.59 E-value=16 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=26.3
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+.. ..+. .-+..||..|+ .|..|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT---YQDQPWHADCF----------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TCEE---ETTEEECTTTT----------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ceEE---ECccccccCcC----------EECCCCCCCCC
Confidence 478888888764 3343 35678888774 58888887753
No 188
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.10 E-value=15 Score=22.18 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=27.1
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+.....+.. .=+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF----------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGCF----------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTTS----------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccCC----------eecCCCCccCC
Confidence 379999988874333321 24678898874 58888887754
No 189
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.90 E-value=28 Score=21.20 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=30.9
Q ss_pred CcccccccccccccCCeeeEcc--CCCCcccHHhHHHHHhc-------CCCCCCccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELR--NCCHVFHRECIDRWVDY-------DHHKTCPLCRAPL 145 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~-------~~~~~CP~CR~~~ 145 (179)
....| ||-.....+ .....- .|...||..|+.---.. .....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34467 788874444 444444 68899999998432111 0145699997643
No 190
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.83 E-value=13 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.465 Sum_probs=24.2
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
..|+-|-..+.. ..+. .-+..||.+|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF----------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLE---AGEKHYHPSCA----------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCBC---CSSCCBCTTTS----------CCSSSCCCCC
T ss_pred CCcccCCCEecC-eeEE---eCCCCCCCCcC----------EeCCCCCCCC
Confidence 368888877665 3332 45677887773 5777777665
No 191
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.31 E-value=14 Score=22.04 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=27.9
Q ss_pred cccccccccccc---C-CeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEE---D-DLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~---~-~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+.. . ..+. .=+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA---YEGQSWHDYCF----------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE---ETTEEEETTTC----------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE---ECcceeCcccC----------EehhcCCCCCC
Confidence 479999988874 2 3333 35678998873 68999888764
No 192
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.06 E-value=11 Score=22.78 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=27.2
Q ss_pred CcccccccccccccCCeeeEccCC---CCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNC---CHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C---~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
+..-| ||.... .+. ......| ...||..|+.---.....-.||.|+....
T Consensus 5 ~~~yC-~C~~~~-~g~-MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGE-MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCCS-TTSCCC-CSS-EECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCeEE-EcCCCC-CCC-EeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 33456 587653 343 3323344 26899999962111111345999977553
No 193
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=35.98 E-value=51 Score=17.49 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030350 10 LITSQFLYRAAVVIALLRWVLFCIIRFR 37 (179)
Q Consensus 10 ~~i~~~i~~~~i~i~v~~~i~~~~~~~~ 37 (179)
.++..++..++.+++.+.++-+++.|.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555666666666655555543
No 194
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.68 E-value=2.7 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=12.5
Q ss_pred CCCCcccHHhHHHH
Q 030350 116 NCCHVFHRECIDRW 129 (179)
Q Consensus 116 ~C~H~Fh~~Ci~~w 129 (179)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998777
No 195
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.01 E-value=13 Score=22.48 Aligned_cols=38 Identities=26% Similarity=0.696 Sum_probs=27.2
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+-|-..+.+ ..+. .-+..||..|+ .|..|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF----------~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILD-RILR---AMGKAYHPGCF----------TCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTC----------BCSSSCCBCTT
T ss_pred CccccCCCeecc-eeEE---ECCccccHHhc----------CcccCCCccCC
Confidence 479999888774 3333 35678898873 68999888764
No 196
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=34.65 E-value=77 Score=19.14 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=19.6
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030350 3 FFEDDPTLITSQFLYRAAVVIALLRWVLFCIIRFR 37 (179)
Q Consensus 3 f~~~~~~~~i~~~i~~~~i~i~v~~~i~~~~~~~~ 37 (179)
|+-+|-.+-+.-+++++++++..+..++.--.+.+
T Consensus 9 F~YDY~tLRiGGLifA~vLfi~GI~iilS~KckCk 43 (72)
T 2jo1_A 9 FTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCK 43 (72)
T ss_dssp GGCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHhhccchHHHHHHHHHHHHHHHcCccccC
Confidence 44455555566677766666665555554444444
No 197
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=34.47 E-value=22 Score=22.35 Aligned_cols=44 Identities=20% Similarity=0.478 Sum_probs=25.7
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
..|..|...+....-.. .=+..||..|..+.+ ...|..|..++.
T Consensus 34 F~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~~~----~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVA---KDNKILCNKCTTRED----SPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEE---ETTEEECHHHHTTCC----CCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeEC---cCCEEEChhHhhhhc----CCccccCCCccc
Confidence 45667766664332211 245667777763321 356888988887
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.04 E-value=19 Score=21.52 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=27.5
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+.. ..+. .-+..||..|+ .|..|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~CF----------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPECF----------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTTC----------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCcC----------ChhhCCCCCCC
Confidence 479999888775 3343 35678888773 68899888865
No 199
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=33.04 E-value=21 Score=23.57 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=31.5
Q ss_pred cccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
-..|..|...+....-.. .=+..||..|..+-+ ...|..|..++..
T Consensus 30 CF~C~~C~~~L~~~~f~~---~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVM---VNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEE---ETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEe---ECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 357888887776432221 356778888886654 3579999999984
No 200
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.63 E-value=9.6 Score=23.07 Aligned_cols=13 Identities=38% Similarity=1.053 Sum_probs=9.7
Q ss_pred CCCCccccccccc
Q 030350 135 HKTCPLCRAPLLT 147 (179)
Q Consensus 135 ~~~CP~CR~~~~~ 147 (179)
--.||.|+.++.-
T Consensus 8 iL~CP~ck~~L~~ 20 (69)
T 2pk7_A 8 ILACPICKGPLKL 20 (69)
T ss_dssp TCCCTTTCCCCEE
T ss_pred heeCCCCCCcCeE
Confidence 4569999887764
No 201
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.60 E-value=6.4 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=26.7
Q ss_pred CcccccccccccccCCeeeEccCCC---CcccHHhHHHHHhcC--CCCCCcc-ccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCC---HVFHRECIDRWVDYD--HHKTCPL-CRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~Fh~~Ci~~wl~~~--~~~~CP~-CR~ 143 (179)
+..-| ||-.... ++ +.....|. ..||..|+. +... ..-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34467 8987532 33 33334544 689999985 3221 1345999 974
No 202
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.52 E-value=21 Score=21.35 Aligned_cols=38 Identities=32% Similarity=0.694 Sum_probs=27.2
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
..|+.|-..+... .+. .-+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~CF----------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHRECL----------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTTC----------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhhC----------CcccCCCcCCC
Confidence 4799998887653 333 46788998874 68889888753
No 203
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.51 E-value=23 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred CcccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+-..|..|...+....-. .=|..||..|..+-+. ..|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~f~----~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS----RGESVYCKDDFFKRFG----TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE----SSSCEECHHHHHHHHS----CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcc----cCCeeeeccccccccc----ccccccccccCC
Confidence 345688887777654321 3567888888876553 469999888865
No 204
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=31.39 E-value=18 Score=20.85 Aligned_cols=38 Identities=26% Similarity=0.631 Sum_probs=27.5
Q ss_pred cccccccccccC-CeeeEccCCCCccc--HHhHHHHHhcCCCCCCccccccccc
Q 030350 97 TCAVCLNHMEED-DLVRELRNCCHVFH--RECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 97 ~C~ICl~~~~~~-~~~~~l~~C~H~Fh--~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
.|+-|-..+..+ ..+. .-+..|| ..|+ .|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~---a~~~~wH~~~~CF----------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT---YNNFSWHASTECF----------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE---ETTEEEETTTTTS----------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE---ECCCccCCCCCCE----------ECCCCCCcCCC
Confidence 688898888764 3443 3578899 8873 68889888754
No 205
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=30.53 E-value=21 Score=25.61 Aligned_cols=12 Identities=8% Similarity=0.534 Sum_probs=5.4
Q ss_pred CcccHHhHHHHH
Q 030350 119 HVFHRECIDRWV 130 (179)
Q Consensus 119 H~Fh~~Ci~~wl 130 (179)
..||..|..+-+
T Consensus 55 ~~yC~~cy~~~f 66 (192)
T 1b8t_A 55 EIYCKSCYGKKY 66 (192)
T ss_dssp EEEEHHHHHHHH
T ss_pred EeeChhhhHhhc
Confidence 344445544433
No 206
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.86 E-value=21 Score=20.51 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=10.3
Q ss_pred CcccccccccccccC
Q 030350 94 VPDTCAVCLNHMEED 108 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~ 108 (179)
+-..|++|...+...
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 344799999875543
No 207
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.80 E-value=23 Score=25.29 Aligned_cols=37 Identities=32% Similarity=0.782 Sum_probs=20.0
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~ 145 (179)
.|..|-..+...+.+.. .-++.||..|+ .|-.|+..|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~CF----------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKCF----------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGGC----------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCCC----------eECCCCCCC
Confidence 46667666654333221 24566776662 466665555
No 208
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.13 E-value=8.9 Score=23.10 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=11.7
Q ss_pred HHHhcCCCCCCccccccccc
Q 030350 128 RWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 128 ~wl~~~~~~~CP~CR~~~~~ 147 (179)
.|+.. --.||.|+.++.-
T Consensus 5 ~~LLe--iL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLE--VLACPKDKGPLRY 22 (67)
T ss_dssp GGGTC--CCBCTTTCCBCEE
T ss_pred HHHHH--HhCCCCCCCcCeE
Confidence 34443 4569999887754
No 209
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=29.02 E-value=40 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=22.4
Q ss_pred Cccccccccccccc-CCeeeEccCCCCcccHHhH
Q 030350 94 VPDTCAVCLNHMEE-DDLVRELRNCCHVFHRECI 126 (179)
Q Consensus 94 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci 126 (179)
....|..|-..+.. ...-..+..||..+|..|.
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~ 389 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECL 389 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhh
Confidence 44589999988742 2222223379999999994
No 210
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.77 E-value=27 Score=23.10 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=17.3
Q ss_pred cccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCccccccc
Q 030350 97 TCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145 (179)
Q Consensus 97 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~ 145 (179)
.|..|-..+...+.+.. .-+..||..| ..|-.|+..|
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C----------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLEC----------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGG----------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe--eCCceECccC----------cccCCCCCCC
Confidence 45555555443332211 2345555555 2455565555
No 211
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.33 E-value=40 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=18.7
Q ss_pred ccCCCCcccHHhHHHHHhcCCCC-CCccccccccccc
Q 030350 114 LRNCCHVFHRECIDRWVDYDHHK-TCPLCRAPLLTYL 149 (179)
Q Consensus 114 l~~C~H~Fh~~Ci~~wl~~~~~~-~CP~CR~~~~~~~ 149 (179)
+..|||.|-.. .... .||.|..+.....
T Consensus 76 C~~CG~~~e~~--------~~~~~~CP~Cgs~~~~i~ 104 (119)
T 2kdx_A 76 CKDCSHVFKPN--------ALDYGVCEKCHSKNVIIT 104 (119)
T ss_dssp CSSSSCEECSC--------CSTTCCCSSSSSCCCEEE
T ss_pred cCCCCCEEeCC--------CCCCCcCccccCCCcEEe
Confidence 34799988752 1256 7999988755443
No 212
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.74 E-value=19 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.8
Q ss_pred ccCCCCcccHHhHHHHHhcCCCCCCcccccccc
Q 030350 114 LRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLL 146 (179)
Q Consensus 114 l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~ 146 (179)
+..|||.|-.. .. ...||.|-.++.
T Consensus 135 C~~Cg~~~~~~------~~--~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 135 CIGCGRKFSTL------PP--GGVCPDCGSKVK 159 (165)
T ss_dssp ESSSCCEESSC------CG--GGBCTTTCCBEE
T ss_pred CCCCCCcccCC------CC--CCcCCCCCCcce
Confidence 44799988643 11 457999988753
No 213
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.48 E-value=34 Score=21.07 Aligned_cols=33 Identities=27% Similarity=0.624 Sum_probs=20.9
Q ss_pred CCcccccccccccccC-CeeeEccCCCCcccHHh
Q 030350 93 WVPDTCAVCLNHMEED-DLVRELRNCCHVFHREC 125 (179)
Q Consensus 93 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~Fh~~C 125 (179)
..+..|+.|.+.|--- +.-.....|.|..|..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4566899999887431 12222336888777766
No 214
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.32 E-value=31 Score=24.44 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=15.3
Q ss_pred CCcccHHhHHHHHhcCCCCCCccccccccc
Q 030350 118 CHVFHRECIDRWVDYDHHKTCPLCRAPLLT 147 (179)
Q Consensus 118 ~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~ 147 (179)
+..||..|..+-+ ...|..|...+..
T Consensus 106 g~~yC~~~y~~~f----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 106 ESVYCKDDFFKRF----GTKCAACQLGIPP 131 (182)
T ss_dssp TEEECHHHHHHTT----SCCCTTTCCCCCS
T ss_pred CEeeecCcccccc----ccccccCCCccCC
Confidence 3445666654332 3468888887764
No 215
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.04 E-value=37 Score=24.13 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=17.3
Q ss_pred eeeEccCCCCcccHHhHHHHHhcCCCCCCccccccc
Q 030350 110 LVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145 (179)
Q Consensus 110 ~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~ 145 (179)
...+++.|||++-. .. -..||.|..+-
T Consensus 137 ~~~~C~~CG~i~~~-------~~--p~~CP~Cg~~~ 163 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EA--PEYCPVCGAPK 163 (170)
T ss_dssp CEEECTTTCCEEES-------CC--CSBCTTTCCBG
T ss_pred CeeEeCCCCCeeCC-------CC--CCCCCCCCCCH
Confidence 44556689998752 11 34799997643
No 216
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.79 E-value=24 Score=22.89 Aligned_cols=42 Identities=26% Similarity=0.630 Sum_probs=25.4
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcCCCCCCcccccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPLLTY 148 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~~~~ 148 (179)
..||.|..++..... +.+|..|-.. +.. ...||-|.+++...
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~--~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEM--KALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEE--EEECTTTCSBCEEE
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhc--cccCcchhhHHHHH
Confidence 589999988754322 2234445322 122 45699999888654
No 217
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.47 E-value=21 Score=21.80 Aligned_cols=19 Identities=11% Similarity=-0.019 Sum_probs=8.2
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 030350 7 DPTLITSQFLYRAAVVIAL 25 (179)
Q Consensus 7 ~~~~~i~~~i~~~~i~i~v 25 (179)
|-.+-+.-+++++++++..
T Consensus 16 Y~tLRigGLifA~vLfi~G 34 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCVIG 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHheeccchhHHHHHHHH
Confidence 3333344445444444443
No 218
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=25.44 E-value=24 Score=20.91 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=27.6
Q ss_pred CcccccccccccccCCeeeEcc--CCCCcccHHhHHHHHhc------CCCCCCccccc
Q 030350 94 VPDTCAVCLNHMEEDDLVRELR--NCCHVFHRECIDRWVDY------DHHKTCPLCRA 143 (179)
Q Consensus 94 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~------~~~~~CP~CR~ 143 (179)
+...| ||-.....+..+. .- .|...||..|+.---.. ..+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~-CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQ-CEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEE-CSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEE-ECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 33457 7976655554443 32 48889999997311000 01345999974
No 219
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.56 E-value=49 Score=19.35 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=17.3
Q ss_pred Ccccccccccc-cccCCeeeEccCCCCcccHHhH
Q 030350 94 VPDTCAVCLNH-MEEDDLVRELRNCCHVFHRECI 126 (179)
Q Consensus 94 ~~~~C~ICl~~-~~~~~~~~~l~~C~H~Fh~~Ci 126 (179)
+...|.||+.. |.++.--. ..-|.-.||..|=
T Consensus 8 d~~~C~iC~KTKFADG~Gh~-C~yCk~r~CaRCG 40 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHN-CSYCQTKFCARCG 40 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEE-BTTTCCEECTTSE
T ss_pred CcchhhhhccceeccCCCcc-ccccCCeeecccC
Confidence 45689999976 44432221 1134455555553
No 220
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.89 E-value=52 Score=27.58 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=32.1
Q ss_pred ccccccccccccCCeeeEccCCCCcccHHhHHHHHhcC---CCCCCcccccccc
Q 030350 96 DTCAVCLNHMEEDDLVRELRNCCHVFHRECIDRWVDYD---HHKTCPLCRAPLL 146 (179)
Q Consensus 96 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~---~~~~CP~CR~~~~ 146 (179)
..| +|...+..+.....+..|.-.||..|+.---... ..-.||.|+..-.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 346 9988775444455555899999999984322210 1356999986543
No 221
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=23.87 E-value=94 Score=23.66 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030350 20 AVVIALLRWVLFCIIRFRNR 39 (179)
Q Consensus 20 ~i~i~v~~~i~~~~~~~~~~ 39 (179)
++.+.++..+++.++|++++
T Consensus 42 ~I~v~V~~ll~~~~~r~r~~ 61 (262)
T 2gsm_B 42 AITIFVTLLILYAVWRFHEK 61 (262)
T ss_dssp HHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33334444444455455544
No 222
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=23.79 E-value=73 Score=18.64 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=28.5
Q ss_pred cccccccccccccCCeeeEccCCCCcccHH-hHHHHHh
Q 030350 95 PDTCAVCLNHMEEDDLVRELRNCCHVFHRE-CIDRWVD 131 (179)
Q Consensus 95 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~-Ci~~wl~ 131 (179)
...|+-|-..+..+.....-...-|.||.. ||...-.
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~ 57 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSS 57 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCC
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHcccCC
Confidence 448999999999988665555788999876 8877643
No 223
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=22.94 E-value=5.4 Score=25.08 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=19.5
Q ss_pred cccccccccc--CCeeeEccCCCCcccHHhHHHH
Q 030350 98 CAVCLNHMEE--DDLVRELRNCCHVFHRECIDRW 129 (179)
Q Consensus 98 C~ICl~~~~~--~~~~~~l~~C~H~Fh~~Ci~~w 129 (179)
||=|-..+.. +......+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6655443322 1222345469999999998877
No 224
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=22.79 E-value=1.4e+02 Score=23.29 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=5.1
Q ss_pred HhHHHHHhc
Q 030350 124 ECIDRWVDY 132 (179)
Q Consensus 124 ~Ci~~wl~~ 132 (179)
+-.++|+..
T Consensus 266 ~~F~~Wl~~ 274 (298)
T 3hb3_B 266 EKYEAWLAG 274 (298)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445666654
No 225
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.75 E-value=22 Score=25.71 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=16.6
Q ss_pred eeEccCCCCcccHHhHHHHHhcCCCCCCcccccc
Q 030350 111 VRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAP 144 (179)
Q Consensus 111 ~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~ 144 (179)
..+++.|||++-.. . .-..||.|..+
T Consensus 155 ~~~C~~CG~~~~g~-------~-~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT-------G-APELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE-------E-CCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC-------C-CCCCCCCCcCC
Confidence 44555799986522 1 13479999875
No 226
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.48 E-value=48 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=17.0
Q ss_pred eeeEccCCCCcccHHhHHHHHhcCCCCCCccccccc
Q 030350 110 LVRELRNCCHVFHRECIDRWVDYDHHKTCPLCRAPL 145 (179)
Q Consensus 110 ~~~~l~~C~H~Fh~~Ci~~wl~~~~~~~CP~CR~~~ 145 (179)
...+++.|||++-. .. -..||.|..+-
T Consensus 170 ~~~~C~~CG~i~~g-------~~--p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIHKG-------ED--FEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEEES-------SC--CSBCTTTCCBG
T ss_pred cEEEECCCCCEEcC-------cC--CCCCCCCCCCh
Confidence 34555679998542 11 35799997753
No 227
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.84 E-value=24 Score=20.48 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=9.3
Q ss_pred CCCCccccccccc
Q 030350 135 HKTCPLCRAPLLT 147 (179)
Q Consensus 135 ~~~CP~CR~~~~~ 147 (179)
.+.||.|+..+..
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 4568888777765
No 228
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=20.61 E-value=97 Score=15.65 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030350 12 TSQFLYRAAVVIALLRWVLFC 32 (179)
Q Consensus 12 i~~~i~~~~i~i~v~~~i~~~ 32 (179)
+.-+++.-++.+.++...+++
T Consensus 9 IaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 9 LAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeEeHHHHHHHHHHHHHHhh
Confidence 344444444444444444443
No 229
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.28 E-value=31 Score=20.70 Aligned_cols=13 Identities=46% Similarity=1.145 Sum_probs=10.0
Q ss_pred CCCCccccccccc
Q 030350 135 HKTCPLCRAPLLT 147 (179)
Q Consensus 135 ~~~CP~CR~~~~~ 147 (179)
--.||.|+.++.-
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 8 ILVCPLCKGPLVF 20 (68)
T ss_dssp ECBCTTTCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 3469999998764
No 230
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.25 E-value=31 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.1
Q ss_pred CCCCccccccccc
Q 030350 135 HKTCPLCRAPLLT 147 (179)
Q Consensus 135 ~~~CP~CR~~~~~ 147 (179)
--.||.|+.++.-
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 8 ILVCPVTKGRLEY 20 (68)
T ss_dssp CCBCSSSCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 4569999998764
No 231
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.07 E-value=30 Score=16.58 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=7.7
Q ss_pred CCCccccccccc
Q 030350 136 KTCPLCRAPLLT 147 (179)
Q Consensus 136 ~~CP~CR~~~~~ 147 (179)
..||+|.+..+.
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 358888765544
Done!