BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030351
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGPC+ +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 24 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 83
Query: 137 ILFKDGKPSDRFVS 150
ILFKDG+P R V
Sbjct: 84 ILFKDGQPVKRIVG 97
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGPC+ +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 137 ILFKDGKPSDRFVS 150
ILFKDG+P R V
Sbjct: 89 ILFKDGQPVKRIVG 102
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKPVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFVS 150
ILFK G+P + +
Sbjct: 75 LILFKGGRPVKQLIG 89
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKPVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFVS 150
ILFK G+P + +
Sbjct: 75 LILFKGGEPVKQLIG 89
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%)
Query: 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119
+EA + +++ +S PVLVDF+A WCGPC+ +AP+++E+ KDK++ VK++T+
Sbjct: 1 MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD 60
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFVS 150
+ P +A Y I ++PT ++FK GK + +
Sbjct: 61 ESPNVASEYGIRSIPTIMVFKGGKKCETIIG 91
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ D PVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFVS 150
ILFK G+P + +
Sbjct: 75 LILFKGGRPVKQLIG 89
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGP + +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 26 SNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 85
Query: 137 ILFKDGKPSDRFVS 150
ILFKDG+P R V
Sbjct: 86 ILFKDGQPVKRIVG 99
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ D PVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFVS 150
ILFK G+P + +
Sbjct: 75 LILFKGGEPVKQLIG 89
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ D P+LVDF+A WCGPC+ MAP A L ++++ KIDT+ +P +A +RI+ +P
Sbjct: 61 ERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIP 120
Query: 135 TFILFKDGK 143
FILF G+
Sbjct: 121 AFILFHKGR 129
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCGPC+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFVS 150
G+P D+ V
Sbjct: 84 GQPVDKVVG 92
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
VLVDF+A WC PC+ +APIL E+ + K+ V K+D ++ P+ A YR+ ++PT ILFK
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 141 DGKPSDRFVS 150
DG+P + V
Sbjct: 82 DGQPVEVLVG 91
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
VLVDF+A WC PC+ +APIL E+ + K+ V K+D ++ P+ A YR+ ++PT ILFK
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 141 DGKPSDRFVS 150
DG+P + V
Sbjct: 81 DGQPVEVLVG 90
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGPC+ +AP+++E+ KI V K++T++ P IA
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 128 YRIEALPTFILFKDGKPSDRFVS 150
Y I ++PT + FK+G+ + +
Sbjct: 68 YNIRSIPTVLFFKNGERKESIIG 90
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGPC+ +AP+++E+ KI V K++T++ P IA
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 128 YRIEALPTFILFKDGKPSDRFVS 150
Y I ++PT + FK+G+ + +
Sbjct: 67 YNIRSIPTVLFFKNGERKESIIG 89
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG C+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 142 GKPSDRFVS 150
G+P D+ V
Sbjct: 83 GQPVDKVVG 91
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120
E T +LD LLQ D P ++DF+A WCGPC+ API E A K++ VK++TE
Sbjct: 39 EVINATAETLDKLLQ-DDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 121 YPQIADTYRIEALPTFILFKDGKPSD 146
P ++ +RI ++PT L+++GK D
Sbjct: 98 EPALSTRFRIRSIPTIXLYRNGKXID 123
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG C+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFVS 150
G+P D+ V
Sbjct: 84 GQPVDKVVG 92
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGPC+ +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGK 143
D ++ + A Y + ++PT ++ KDG+
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGE 82
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 77
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 78 PKYGIRGIPTLLLFKNGE 95
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS D + K+ VLVDF+A WCGPC+ + P L E+G K+ V K++ + P+ +
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 128 YRIEALPTFILFKDGKPSDRFVS 150
Y++ ++PT +L +DGK D+ V
Sbjct: 70 YQVRSIPTLMLVRDGKVIDKKVG 92
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I ++PT +LFK+G+
Sbjct: 68 PKYGIRSIPTLLLFKNGE 85
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP 122
K T S + + K+DKPVLVDF+A WCGPC+ +AP L + A DKI++VK++ ++ P
Sbjct: 8 KHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP 67
Query: 123 QIADTYRIEALPTFILFKDGKPSDRFVS 150
A Y + ++PT +++ G+ + V
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVG 95
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDG 142
Y I +PT +LFK+G
Sbjct: 68 PKYGIRGIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+AT CGPC+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 142 GKPSDRFVS 150
G+P D+ V
Sbjct: 83 GQPVDKVVG 91
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ V+E + F + + KSDKPVLVDF+A WCGPC+ +API+ E+ + K++VVK+
Sbjct: 1 MSVIEVTDENF---EQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKV 57
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFVS 150
+ ++ P A Y I ++PT +LFK+G+ DR V
Sbjct: 58 NVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVG 91
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 9 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 68
Query: 126 DTYRIEALPTFILFKDGK 143
Y I PT +LFK+G+
Sbjct: 69 PKYGIRGTPTLLLFKNGE 86
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGP + +AP+++E+ KI V K++T++ P IA
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 128 YRIEALPTFILFKDGKPSDRFVS 150
Y I ++PT + FK+G+ + +
Sbjct: 68 YNIRSIPTVLFFKNGERKESIIG 90
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+++ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A Y I +PT
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 77
Query: 136 FILFKDGK 143
+LFK+G+
Sbjct: 78 LLLFKNGE 85
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG + +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFVS 150
G+P D+ V
Sbjct: 84 GQPVDKVVG 92
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D L K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y +PT +LFK+G+
Sbjct: 68 PKYIERGIPTLLLFKNGE 85
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGP + +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGK 143
D ++ + A Y + ++PT ++ KDG+
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGE 82
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGP + +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGK 143
D ++ + A Y + ++PT ++ KDG+
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGE 82
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +A IL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGP + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 28 TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 87
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 88 PKYGIRGIPTLLLFKNGE 105
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCG C+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 65 QTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVG-AALKDKIQVVKIDTEKY 121
Q SS D Q DK V++DF+ATWCGPC+ + P+ ++ DK+ K+D ++
Sbjct: 18 QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ 77
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFVS 150
QIA I A+PTF+ FK+G+ D V
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVG 106
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGP + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 6/93 (6%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPV-LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
VVEA ++ F+ + + P+ LVDF+A WCGPC+ ++PIL E+ +++VVK++
Sbjct: 35 VVEADEKGFAQ-----EVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVN 89
Query: 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFVS 150
+++P +A Y + ++PT +LF+ G P +V
Sbjct: 90 VDEHPGLAARYGVRSVPTLVLFRRGAPVATWVG 122
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCG-PCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
T S D + K+D +LVDF+A WCG PC+ +APIL+E+ + K+ V K++ ++ P
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 125 ADTYRIEALPTFILFKDGK 143
A Y I +PT +LFK+G+
Sbjct: 68 APKYGIRGIPTLLLFKNGE 86
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKP +VDFYA WCGPC+ +APIL+E+ +I + K+DTEK ++A + I ++P+
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 136 FILF--KDGKPS 145
ILF +GKP
Sbjct: 96 -ILFIPMEGKPE 106
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 68 SSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
+ LD L K S K V++DF+ATWCGPC+ ++P L E+ D + V+K+D ++ IA
Sbjct: 14 ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 73
Query: 127 TYRIEALPTFILFKDGKPSDRFVS 150
Y I ++PTF+ K+G + F
Sbjct: 74 EYNISSMPTFVFLKNGVKVEEFAG 97
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 68 SSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
+ LD L K S K V++DF+ATWCGPC+ ++P L E+ D + V+K+D ++ IA
Sbjct: 9 ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 68
Query: 127 TYRIEALPTFILFKDGKPSDRFVS 150
Y I ++PTF+ K+G + F
Sbjct: 69 EYNISSMPTFVFLKNGVKVEEFAG 92
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
K F + +++ K V++DF A+WCGPC+++AP+ E + +K+D ++ +
Sbjct: 22 KDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKE 80
Query: 124 IADTYRIEALPTFILFKDGKPSDRFVS 150
+A+ Y +EA+PTF+ KDG +D+ V
Sbjct: 81 VAEKYNVEAMPTFLFIKDGAEADKVVG 107
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
Q D + S+ PV+VDF+A WCGPC+ + P L ++ A K+ + K+D + + +
Sbjct: 18 QDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDL 77
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A Y + A+PT + K+G D+FV
Sbjct: 78 AIEYEVSAVPTVLAMKNGDVVDKFVG 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 65 QTFSSLDDLLQKSDKP---VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
T + ++ LQK+++ V+VDF A+WCGPC+++AP ++ L + + +K+DT++
Sbjct: 22 HTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDEL 80
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFVS 150
+A + I+A+PTF+ K+GK D+ V
Sbjct: 81 KSVASDWAIQAMPTFMFLKEGKILDKVVG 109
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WC C+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
K + +L++++DK +++DFYATWCGPC+ M P L ++ A D ++ VK D ++
Sbjct: 15 TKLTNLTEFRNLIKQNDK-LVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDES 72
Query: 122 PQIADTYRIEALPTFILFKDGK 143
P IA + A+PTF+L KDG+
Sbjct: 73 PDIAKECEVTAMPTFVLGKDGQ 94
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT- 135
DKP +VDFYA WCGPC+ +APIL E+ KI + K++ +K P++A + I+++PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 136 -FILFKDGKP 144
F+ K G+P
Sbjct: 110 WFVPMK-GEP 118
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT- 135
DKP +VDFYA WCGPC+ +APIL E+ KI + K++ +K P++A + I+ +PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 136 -FILFKDGKP 144
F+ K G+P
Sbjct: 110 WFVPMK-GEP 118
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
K+++PVLV F+A+WCGPCQ M+P++N D+++VVK++ + P Y++E +P
Sbjct: 23 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPA 82
Query: 136 FILFK 140
L K
Sbjct: 83 LRLVK 87
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
KQ F + + + K V++DF A+WCGPC+ +AP+ E I +K+D ++
Sbjct: 14 KQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDELKD 72
Query: 124 IADTYRIEALPTFILFKDGKPSDRFVS 150
+A+ Y +EA+PTF+ KDG+ D V
Sbjct: 73 VAEAYNVEAMPTFLFIKDGEKVDSVVG 99
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
T + L+ L+ ++ + ++VDF+A WCGPC+ +AP + + + + ++ K+D ++ +
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE-VEFAKVDVDQNEEA 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRF 148
A Y + A+PTF+ KDGK DRF
Sbjct: 65 AAKYSVTAMPTFVFIKDGKEVDRF 88
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 68 SSLDDLL-QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
L+ LL Q +K V+VDF+ATWCGPC+ +AP+ E+ D I VK+D +K + A
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAI-FVKVDVDKLEETAR 79
Query: 127 TYRIEALPTFILFKDGK 143
Y I A+PTFI K+G+
Sbjct: 80 KYNISAMPTFIAIKNGE 96
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA 132
L Q +K V+VDF+ATWCGPC+ +AP+ E+ D I VK+D +K + A Y I A
Sbjct: 19 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAI-FVKVDVDKLEETARKYNISA 76
Query: 133 LPTFILFKDGK 143
+PTFI K+G+
Sbjct: 77 MPTFIAIKNGE 87
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGP--------------CQYMAPILNEVGAALKDKI 111
T S D + K+D +LVDF+A WCGP C+ +APIL+E+ + K+
Sbjct: 9 TDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKL 68
Query: 112 QVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143
V K++ ++ P A Y I +PT +LFK+G+
Sbjct: 69 TVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WC + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGK 143
Y I +PT +LFK+G+
Sbjct: 68 PKYGIRGIPTLLLFKNGE 85
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGPC+ +AP++ + D K+D ++ +
Sbjct: 13 KSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 71
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + ++PT I +K GK R V
Sbjct: 72 AQKAEVSSMPTLIFYKGGKEVTRVVG 97
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGPC+ +AP++ + D K+D ++ +
Sbjct: 6 KSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + ++PT I +K GK R V
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
+ K V++DF A+WCGPC+ MAP+ ++ + + +K+D ++ IA+ + +EA+PTF
Sbjct: 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPTF 91
Query: 137 ILFKDGKPSDRFVS 150
+ K+G DR V
Sbjct: 92 LFMKEGDVKDRVVG 105
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA 132
L + +K V++DFYATWCGPC+ +AP L E+ ++ D + +K+D ++ IA +I
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVV-FLKVDVDECEDIAQDNQIAC 73
Query: 133 LPTFILFKDGKPSDRF 148
+PTF+ K+G+ D
Sbjct: 74 MPTFLFMKNGQKLDSL 89
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
+ S K ++VDF A+WC PC+ +API E+ + + +K+D ++ +A+ + +EA+P
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMP 81
Query: 135 TFILFKDGKPSDRFVS 150
TFI KDGK D+ V
Sbjct: 82 TFIFLKDGKLVDKTVG 97
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
D S + +VDF+A WC PC +API+ E+ A ++ K+++++ P IA Y +
Sbjct: 10 DSFLASHEIAVVDFWAEWCAPCLILAPIIEEL-AEDYPQVGFGKLNSDENPDIAARYGVM 68
Query: 132 ALPTFILFKDGKPSDRFVS 150
+LPT I FKDG+P D +
Sbjct: 69 SLPTVIFFKDGEPVDEIIG 87
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGPC+ +AP++ + + K+D ++ +
Sbjct: 6 KTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 63
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + A+PT +LFK+GK + V
Sbjct: 64 AQKNEVSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGPC+ +AP++ + + K+D ++ +
Sbjct: 12 KTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 69
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + A+PT +LFK+GK + V
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T +L + ++++ VLVDF+ATWCGPCQ + IL + A KD + +K+D +K A
Sbjct: 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD-VTFIKVDVDKNGNAA 69
Query: 126 DTYRIEALPT-FILFKDG---KPSDRFVS 150
D Y + ++P F + K+G K D+FV
Sbjct: 70 DAYGVSSIPALFFVKKEGNEIKTLDQFVG 98
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
+ K V++DF A+WCGP + MAP+ ++ + + +K+D ++ IA+ + +EA+PTF
Sbjct: 36 AKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPTF 94
Query: 137 ILFKDGKPSDRFVS 150
+ K+G DR V
Sbjct: 95 LFMKEGDVKDRVVG 108
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGP + +AP++ + D K+D ++ +
Sbjct: 6 KSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + ++PT I +K GK R V
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGP + +AP++ + D K+D ++ +
Sbjct: 14 KSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 72
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + ++PT I +K GK R V
Sbjct: 73 AQKAEVSSMPTLIFYKGGKEVTRVVG 98
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 67 FSSLDDLLQ-----------KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVK 115
+SS DD+++ +SD LV+FYA WCG CQ + P + ALKD ++V
Sbjct: 13 YSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGA 72
Query: 116 IDTEKYPQIADTYRIEALPTFILF--KDGKPSD 146
++ +K+ + Y ++ PT +F KP D
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPED 105
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGP + +AP++ + + K+D ++ +
Sbjct: 12 KTASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 69
Query: 125 ADTYRIEALPTFILFKDGKPSDRFVS 150
A + A+PT +LFK+GK + V
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVV--KIDTEKYPQIAD 126
+ D+ + K +K V+VDF+A WC PC +AP++ E+ D QV K++TE+ IA
Sbjct: 15 NFDEFITK-NKIVVVDFWAEWCAPCLILAPVIEELA---NDYPQVAFGKLNTEESQDIAM 70
Query: 127 TYRIEALPTFILFKDGKPSDRFVS 150
Y I +LPT + FK+G+ D+ +
Sbjct: 71 RYGIMSLPTIMFFKNGELVDQILG 94
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
D + ++ V+VDF+A WCGPC+ +AP E K+ +K+D ++ ++ + I
Sbjct: 20 DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENIT 78
Query: 132 ALPTFILFKDGKPSDRFVS 150
++PTF ++K+G D +
Sbjct: 79 SMPTFKVYKNGSSVDTLLG 97
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
QTF+ + +LQ V VDFYA WCGPCQ AP + +K K++ K+D + YPQ
Sbjct: 11 QTFN--EKVLQGKTHWV-VDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 67
Query: 125 ADTYRIEALPTFILFK 140
I+A P+ L++
Sbjct: 68 CQKAGIKAYPSVKLYQ 83
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119
+E+K +LD DK V+VDF ATWCGPC+ + P + + + I +++D +
Sbjct: 5 IESKTAFQEALD---AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVD 60
Query: 120 KYPQIADTYRIEALPTFILFKDGK 143
+A Y I +PT +LFK+G+
Sbjct: 61 DAQDVAPKYGIRGIPTLLLFKNGE 84
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ KP++VDF ATWCGPC+ +AP+ + K+ +K+D + +A+ I A+P
Sbjct: 21 KEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 135 TFILFKDGKPSDRFVS 150
TF ++KDG +D V
Sbjct: 81 TFHVYKDGVKADDLVG 96
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T + D+++ +++K VLVD +A WC PC PI +V K K +++ ++ +IA
Sbjct: 10 TEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA 68
Query: 126 DTYRIEALPTFILFKDGKPSDRFVS 150
D Y + +PT ++F +G+ D V
Sbjct: 69 DKYSVLNIPTTLIFVNGQLVDSLVG 93
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++A PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASESEVKSMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASEXEVKCMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI----QVV--KIDTEKY 121
++D++L +D LV+FYA WC Q + PI E +K++ QVV ++D +++
Sbjct: 13 ENIDEILNNADV-ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQH 71
Query: 122 PQIADTYRIEALPTFILFKDGKPSDR 147
IA YRI PT LF++G R
Sbjct: 72 SDIAQRYRISKYPTLKLFRNGXXXKR 97
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ KP++V F ATWCGPC+ +AP+ + K+ +K+D + +A+ I A+P
Sbjct: 21 KEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 135 TFILFKDGKPSDRFVS 150
TF ++KDG +D V
Sbjct: 81 TFHVYKDGVKADDLVG 96
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVNDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYP 122
T + DD++ +D +LV+FYA WCG C+ +AP + L + I + K+D +
Sbjct: 13 TKDNFDDVVNNADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQT 71
Query: 123 QIADTYRIEALPTFILFKDGKPSD 146
+A + + PT +F+ G+P D
Sbjct: 72 DLAKRFDVSGYPTLKIFRKGRPFD 95
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCTPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 71 DDLLQKSDKPVLV-DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR 129
++LL+ K +LV F+A W C M ++ E+ L ++ VK++ E P++++ Y
Sbjct: 30 EELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEKYE 88
Query: 130 IEALPTFILFKDGKPSDRF 148
I ++PTF+ FK+ + DR
Sbjct: 89 ISSVPTFLFFKNSQKIDRL 107
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 71 DDLLQKSDKPVLV-DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR 129
++LL+ K +LV F+A W C M ++ E+ L ++ VK++ E P++++ Y
Sbjct: 24 EELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYE 82
Query: 130 IEALPTFILFKDGKPSDRF 148
I ++PTF+ FK+ + DR
Sbjct: 83 ISSVPTFLFFKNSQKIDRL 101
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDSQDVASESEVKSMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYP 122
T + D+++ +D +LV+FYA WCG C+ +AP + L + I + K+D
Sbjct: 136 TKENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194
Query: 123 QIADTYRIEALPTFILFKDGKPSDRFV--SQFNIVFFVFLENLICAS 167
+A + + PT +F+ G+P D ++ IV ++ ++ AS
Sbjct: 195 DLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGAAAS 241
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYPQI 124
++ D+ + D VL++FYA WCG C+ AP ++ LKDK I V KID +
Sbjct: 23 ANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL 81
Query: 125 ADTYRIEALPTFILFKDGKPSD 146
A + + PT + K G+ D
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD 103
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++A PTF
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
+ +D+ K V V+FYA WCG C+ +API +++G KD +V + +
Sbjct: 16 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV 75
Query: 129 RIEALPTFILFKDGKPSDRFVSQFN 153
++ + PT F +DR V +N
Sbjct: 76 KVHSFPTLKFFP--ASADRTVIDYN 98
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
+ +D+ K V V+FYA WCG C+ +API +++G KD +V + +
Sbjct: 258 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV 317
Query: 129 RIEALPTFILFKDGKPSDRFVSQFN 153
++ + PT F +DR V +N
Sbjct: 318 KVHSFPTLKFFP--ASADRTVIDYN 340
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALK---DKIQVVKIDTEKYPQIADTYRIEAL 133
+ K +LV+FYA WCG C+ +AP + LK +I++ K+D + +A Y +
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 134 PTFILFKDG 142
PT F++G
Sbjct: 83 PTIKFFRNG 91
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+LV+F+A WCG C+ +AP LK + + K+D + Y + PT +F+
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFR 83
Query: 141 DGKPSDRF 148
DG+ + +
Sbjct: 84 DGEEAGAY 91
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ K VL +F A WCGPC+ +AP E+ + +V ID ++ + ++ I+A PT
Sbjct: 44 RDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLV-IDVDELSDFSASWEIKATPT 102
Query: 136 FILFKDGKPSDRFVS 150
F +DG+ D+ V
Sbjct: 103 FFFLRDGQQVDKLVG 117
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 80 PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139
P+++ F +WC PC+ M P E+ + ++ I+ +D E + I LP+ LF
Sbjct: 19 PIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALF 78
Query: 140 KDGKPSDRFVSQFN 153
DG + F N
Sbjct: 79 VDGMIREVFSGTMN 92
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
QTF+ + +LQ V VDFYA W GP Q AP + +K K++ K+D + YPQ
Sbjct: 665 QTFN--EKVLQGKTHWV-VDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 721
Query: 125 ADTYRIEALPTFILFK 140
I+A P+ L++
Sbjct: 722 CQKAGIKAYPSVKLYQ 737
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 77 SDK-PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
SDK P LVDF+A W P + + P L + L +++V +D + + + Y I+A PT
Sbjct: 453 SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPT 512
Query: 136 FILFK 140
++F
Sbjct: 513 TVVFN 517
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 66 TFSSLDDLL--QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
T S+ ++L+ +K D+ +VDFY+ W P Q + P + L I V +D +Y
Sbjct: 549 TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS 608
Query: 124 IADTYRIEALPTFILF 139
++ P +
Sbjct: 609 FCTQENVQRYPEIRFY 624
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYPQI 124
+ D+ + D VL++FYA WCG C+ AP ++ + LKD I V KID +
Sbjct: 25 GNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML 83
Query: 125 ADTYRIEALPTFILFKDGKPSD 146
A + + PT + K G+ D
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD 105
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++++PTF
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTF 88
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 89 QFFKKGQKVGEF 100
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKRMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVV--KIDTEKYPQIAD 126
+ D ++ K VL++FYA WCG C+ + PI +G K + +V K+D D
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 127 TYRIEALPTFILFKDG 142
Y++E PT G
Sbjct: 76 QYKVEGFPTIYFAPSG 91
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDXQDVASEXEVKCMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ K VL +F A WCGP + +AP E+ + +V ID ++ + ++ I+A PT
Sbjct: 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV-IDVDELSDFSASWEIKATPT 102
Query: 136 FILFKDGKPSDRFVS 150
F +DG+ D+ V
Sbjct: 103 FFFLRDGQQVDKLVG 117
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGPC+ MAP ++ D I +K+D
Sbjct: 20 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDC 76
Query: 118 TEKYPQIADTYRIEALPTFILFKD 141
++ +A I +PTF + K+
Sbjct: 77 NQENKTLAKELGIRVVPTFKILKE 100
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGPC+ MAP ++ D I +K+D
Sbjct: 8 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDC 64
Query: 118 TEKYPQIADTYRIEALPTFILFKD 141
++ +A I +PTF + K+
Sbjct: 65 NQENKTLAKELGIRVVPTFKILKE 88
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 11 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 65
Query: 120 KYPQIADTYRIEALPTFILFKDGK 143
I Y + PT +LF+ GK
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGK 89
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 13 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 67
Query: 120 KYPQIADTYRIEALPTFILFKDGK 143
I Y + PT +LF+ GK
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGK 91
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 6 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 60
Query: 120 KYPQIADTYRIEALPTFILFKDGK 143
I Y + PT +LF+ GK
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGK 84
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGA-----ALKDKIQV 113
VV AK LDD K VL++FYA WCG C+ +AP E+GA KD++ +
Sbjct: 11 VVVAKNYNEIVLDDT-----KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 65
Query: 114 VKIDTEKYPQIADTYRIEALPTFILFKDG 142
K+D + D I+ PT L+ G
Sbjct: 66 AKVDATAN-DVPD--EIQGFPTIKLYPAG 91
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 68 SSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
S+L +L++S PVL F++ C + PIL + A + + K+D + IA
Sbjct: 15 SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAA 74
Query: 127 TYRIEALPTFILFKDGKPSDRF 148
+ + A+PT LF++G+P D F
Sbjct: 75 QFGLRAIPTVYLFQNGQPVDGF 96
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 71 DDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR- 129
D+++ K VLV +YA WCG C+ +AP E+ + V I K + R
Sbjct: 369 DEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLI--AKLDHTENDVRG 426
Query: 130 --IEALPTFILFKDGKPSDRFVSQ 151
IE PT +L+ GK S+ V Q
Sbjct: 427 VVIEGYPTIVLYPGGKKSESVVYQ 450
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADT 127
S ++ +Q D VL +F+A WCG C+ MAP + L +K I + +ID + +
Sbjct: 23 SFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCME 81
Query: 128 YRIEALPTFILFKD 141
+ I P+ +FK+
Sbjct: 82 HNIPGFPSLKIFKN 95
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+LV+F+A WCG + +AP LK + + K+D + Y + PT +F+
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFR 83
Query: 141 DGKPSDRF 148
DG+ + +
Sbjct: 84 DGEEAGAY 91
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL-KD-KIQVVKIDTEKYPQIAD 126
+ D+++ +K VL++FYA WCG C+ + P E+G L KD I + K+D +
Sbjct: 361 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPS 419
Query: 127 TYRIEALPT 135
Y + PT
Sbjct: 420 PYEVRGFPT 428
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL-KD-KIQVVKIDTEKYPQIAD 126
+ D+++ +K VL++FYA WCG C+ + P E+G L KD I + K+D +
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPS 94
Query: 127 TYRIEALPT 135
Y + PT
Sbjct: 95 PYEVRGFPT 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATW GP + + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRF 148
FK G+ F
Sbjct: 78 QFFKKGQKVGEF 89
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAP----ILNEVGAALKDKIQVVKIDTEKY 121
T S D + S+ +V+FYA WCG C+ + P +EV K K+++ +D
Sbjct: 13 TDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN 72
Query: 122 PQIADTYRIEALPTFILFKDGK 143
+A Y I PT +F+ G+
Sbjct: 73 QVLASRYGIRGFPTIKIFQKGE 94
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT 118
++E + T+S ++ S KPV+V FY+ C C+ P E +I+
Sbjct: 8 IIEFEDXTWS---QQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINI 64
Query: 119 EKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFVFLENLICASLQN 170
P A+ Y ++ PTF F G+P V Q ++ L+N + LQ+
Sbjct: 65 ATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQ---IYPSILKNAVRDXLQH 113
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+++FYA WC CQ + P +D ++ + K+D + P ++ + I ALPT K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 141 DGK 143
DG+
Sbjct: 86 DGE 88
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQV--VKIDTEKYPQIAD 126
S D + ++ LV+FYA WCG C+ ++ + L +QV V D K +
Sbjct: 26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCA 85
Query: 127 TYRIEALPTFILFK 140
Y + PT ++F+
Sbjct: 86 KYDVNGFPTLMVFR 99
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 68 SSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
S+L L++S PVL F++ C + P+L + A + + K+D + IA
Sbjct: 15 SNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAA 74
Query: 127 TYRIEALPTFILFKDGKPSDRF 148
+ + A+PT LF++G+P D F
Sbjct: 75 QFGLRAIPTVYLFQNGQPVDGF 96
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
+Q S++ + + + +++ F+A WC C + ++++ +I ++K+D +K
Sbjct: 28 QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES 87
Query: 124 IADTYRIEALPTFILFKDGK---PSDRFVSQFNIVFFV 158
+A + +++LPT IL K+ D FVS +++ +
Sbjct: 88 LARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALI 125
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 69 SLDDLLQKSDKPV--LVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIA 125
++D+ L++ DK V +V+F+A W CQ API ++ + K+D +Y ++
Sbjct: 16 TIDEELER-DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVS 74
Query: 126 DTYRIEA------LPTFILFKDGKPSDR 147
Y++ LPT ILF+ GK + R
Sbjct: 75 TRYKVSTSPLTKQLPTLILFQGGKEAMR 102
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGP + MAP ++ D I +K+D
Sbjct: 7 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDC 63
Query: 118 TEKYPQIADTYRIEALPTFILFKD 141
++ +A I +PTF + K+
Sbjct: 64 NQENKTLAKELGIRVVPTFKILKE 87
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120
EA F L D +V F+ C C+ M +L++ GA ++ + +D+E
Sbjct: 10 EAGMAHFEGLSD--------AIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEA 60
Query: 121 YPQIADTYRIEALPTFILFKDGKPSDRFVSQFN 153
P++ E +PT + +DGK + F N
Sbjct: 61 RPELMKELGFERVPTLVFIRDGKVAKVFSGIMN 93
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143
F A WCGPC+ + + ++ ++ K+D + +I R+ LPTFI+ + GK
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGK 101
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 18/81 (22%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQ-----VVKIDT 118
Q FSS + +++ F A WC PC N++ K+++ +V ID
Sbjct: 32 NQVFSST------QNSSIVIKFGAVWCKPC-------NKIKEYFKNQLNYYYVTLVDIDV 78
Query: 119 EKYPQIADTYRIEALPTFILF 139
+ +P++ D + I+ALPTF +
Sbjct: 79 DIHPKLNDQHNIKALPTFEFY 99
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 37/119 (31%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------------------------G 104
SL DL K + +D +ATWCGPC+ P L E+
Sbjct: 24 SLADL---KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN 80
Query: 105 AALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDGK--------PSD-RFVSQFN 153
KD+++ +++ D Y I +P FIL +DGK PSD + +FN
Sbjct: 81 MVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFN 139
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 58 PVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKI 116
PV+E Q + DK +++ F+ +W PC+ + + + + + + I
Sbjct: 1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
Query: 117 DTEKYPQIADTYRIEALPTFILFKDG 142
D ++ +I++ + I A+P FI+ G
Sbjct: 61 DADENSEISELFEISAVPYFIIIHKG 86
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKID 117
L K+ V +DF+A+WCGPC+ P N+ A K K QVV ++
Sbjct: 23 LSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVN 68
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
++ + L+ K LV F C CQ + P+L E+ ++ +D E+ +
Sbjct: 12 NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 128 YRIEALPTFILFKDGK 143
+ ++ +P + FKDG+
Sbjct: 72 FSLKGVPQILYFKDGE 87
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADTYR 129
LV+ +A+WC PC AP+L E+G KDK Q+V I+ Y AD R
Sbjct: 46 LVNVWASWCVPCHDEAPLLTELG---KDKRFQLVGIN---YKDAADNAR 88
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYP--QIADTYRIE 131
DK + VD + TWCGPC+ ++ ++ + V +K+D EK ++ Y +
Sbjct: 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVH 85
Query: 132 ALPTFI 137
A PT +
Sbjct: 86 AYPTLL 91
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEA 132
K +LV+ +ATWC PC+ P L+E+ L ++ + IDT + P+ T+ EA
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT-RDPEKPKTFLKEA 116
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNE----------VGAALKDKIQVVKIDTEKYP-----Q 123
KP ++ F+A WC CQ AP++ + VG A D++ ++ KYP Q
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 124 IADT 127
+ADT
Sbjct: 86 LADT 89
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNE----------VGAALKDKIQVVKIDTEKYP-----Q 123
KP ++ F+A WC CQ AP++ + VG A D++ ++ KYP Q
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
Query: 124 IADT 127
+ADT
Sbjct: 100 LADT 103
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 90 CGPCQYMAPILNEVGAALKDKI--QVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147
C C + ++ E+ + L DK+ ++V DT + ++A+ YRI+ P + +DGK D
Sbjct: 35 CQYCDQLKQLVQEL-SELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGK--DF 91
Query: 148 FVSQFNI----VFFVFLENLICAS 167
V F I F FLE+++ S
Sbjct: 92 GVRYFGIPAGHEFAAFLEDIVDVS 115
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 106 ALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFVFLENLIC 165
A K KI ++ +YP+ AD Y + A+P ++ +G+ +F + +FLE L+
Sbjct: 166 AGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEK--MFLEKLLS 223
Query: 166 A 166
A
Sbjct: 224 A 224
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
+L + +V F CGPC +AP + + + +++D + A T I
Sbjct: 15 ELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAV-FLEVDVHQCQGTAATNNIS 73
Query: 132 ALPTFILFKD 141
A PTF F++
Sbjct: 74 ATPTFQFFRN 83
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 90 CGPCQYMAPILNEVGAALKDKI--QVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147
C C + ++ E+ + L DK+ ++V DT + ++A YRI+ P + +DGK D
Sbjct: 35 CQYCDQLKQLVQEL-SELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGK--DF 91
Query: 148 FVSQFNI----VFFVFLENLICASLQNHCLFS 175
V F + F FLE+++ S + L
Sbjct: 92 GVRYFGLPAGHEFAAFLEDIVDVSREETNLMD 123
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 106 ALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFVFLENLIC 165
A K KI ++ +YP+ AD Y + A+P ++ +G+ DR + +FLE L+
Sbjct: 166 AGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE--DRVEFEGAYPEKMFLEKLLS 223
Query: 166 A 166
A
Sbjct: 224 A 224
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQ-----V 113
VVE +TF D ++ +K V V +Y W + +++ + K
Sbjct: 17 VVELTDETF---DSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA 73
Query: 114 VKIDTEKYPQIADTYRIEALPTFILF 139
+ID EKYP + + R+ PT +
Sbjct: 74 ARIDGEKYPDVIERMRVSGFPTMRYY 99
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAP-ILNEVGAA--LKDKIQV--VKIDTEKYPQIADT 127
L Q + V+V F++ C CQ M +L++ G + L+ + V V +DT + ++A
Sbjct: 14 LAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARR 73
Query: 128 YRIEALPTFILF 139
YR+ PTF+
Sbjct: 74 YRVPGTPTFVFL 85
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTF 136
V++ F A WC C YMA +L+ + TEKY +I+ D + EAL
Sbjct: 40 VILWFMAAWCPSCVYMADLLDRL--------------TEKYREISVIAIDFWTAEALKAL 85
Query: 137 ILFKDGKP 144
L K G P
Sbjct: 86 GLNKPGYP 93
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 83 VDFYATWCGPCQYMAPILNEVGAALKD-----KIQVVKIDTEKYPQIADTYRIEALPTFI 137
V+F+A+WCG AP E+ +KD + V+ E + + I PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 138 LFK 140
F+
Sbjct: 95 FFQ 97
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDK 110
V+V+F+ATWC PC+ P + AA K
Sbjct: 31 VIVNFWATWCPPCREEIPSXXRLNAAXAGK 60
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG---KPSDRFVSQF 152
N++G LKD + + EK+P+I D + A+ LF+DG KP + ++
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 376
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG---KPSDRFVSQF 152
N++G LKD + + EK+P+I D + A+ LF+DG KP + ++
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 376
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG---KPSDRFVSQF 152
N++G LKD + + EK+P+I D + A+ LF+DG KP + ++
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 376
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG---KPSDRFVSQF 152
N++G LKD + + EK+P+I D + A+ LF+DG KP + ++
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 376
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI---------DTEKYPQIADT 127
+KP L+ F++ C C+ P +NE +D++ VV + D K + A
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE 87
Query: 128 YRIEALPTFILFKDGKPSDRFVSQFNIVFFVF 159
+ I P F+ D +D F +++ ++VF
Sbjct: 88 HDI-TQPIFV-DSDHALTDAFENEYVPAYYVF 117
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALK 108
K DKP L+ F+A+WC C L+E+G A K
Sbjct: 36 KKDKPTLIKFWASWCPLC------LSELGQAEK 62
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 74 LQKSDKPV-LVDFYATWCGPCQYMAP 98
LQ PV +V+ +ATWCGPC+ P
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXP 44
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 28/91 (30%)
Query: 79 KPVLVDFYATWCGPCQYMAPIL-NEVGAALKDKIQVVKI--------------------- 116
K V ++F+ TWC PC+ P + N+ +++V +
Sbjct: 27 KGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 117 ---DTEKYPQIADTYRIEALP-TFILFKDGK 143
DT++ Q+ D Y + LP TF++ +GK
Sbjct: 87 VVLDTDR--QVLDAYDVSPLPTTFLINPEGK 115
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
KPVL++ +ATWC C+ LN++ A I+VV ++ + Q A ++
Sbjct: 69 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISW 115
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
KPVL++ +ATWC C+ LN++ A I+VV ++ + Q A ++
Sbjct: 52 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISW 98
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
KPVL++ +ATWC C+ LN++ A I+VV ++ + Q A ++
Sbjct: 52 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISW 98
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 34/94 (36%)
Query: 79 KPVLVDFYATWCGPCQ----YMAP------------ILNEVGAALKDKIQV--------- 113
K V ++F+ TWC PC+ YMA + VG + KI V
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGES---KIAVHNFMKSYGV 83
Query: 114 ---VKIDTEKYPQIADTYRIEALP-TFILFKDGK 143
V +DT++ Q+ D Y + LP TF++ +GK
Sbjct: 84 NFPVVLDTDR--QVLDAYDVSPLPTTFLINPEGK 115
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
KPVL++ +ATWC C+ LN++ A I+VV ++ + Q A ++
Sbjct: 13 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISW 59
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd
(Photoreduced Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQ 94
L++ KPV++D YA WC C+
Sbjct: 26 LVEAKGKPVMLDLYADWCVACK 47
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQ 94
L++ KPV++D YA WC C+
Sbjct: 23 LVEAKGKPVMLDLYADWCVACK 44
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 70 LDDLLQK-----SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
LD L+K S PV+V F T+CG C + +L +VGA+ K VV++D
Sbjct: 6 LDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGASYK----VVELD 53
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
+ + + K+ T SSL K V++ F A+WCG C+ P + +
Sbjct: 18 ITLTDGKQVTLSSL------RGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 70 LDDLLQK-----SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
LD L+K S PV+V F T+CG C + +L +VGA+ K VV++D
Sbjct: 7 LDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGASYK----VVELD 54
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPIL-NEVGAALKDK-IQVVKIDTEKYPQ 123
+++ KP L+ F A WC C+ + L N+ AL K +VVKID + +
Sbjct: 26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDR 76
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALK 108
K DKP L+ F+A+WC C L+E+G K
Sbjct: 22 KKDKPTLIKFWASWCPLC------LSELGQTEK 48
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALK 108
K DKP L+ F+A+WC C L+E+G K
Sbjct: 21 KKDKPTLIKFWASWCPLC------LSELGQTEK 47
>pdb|4EUY|A Chain A, Crystal Structure Of Thioredoxin-Like Protein Bce_0499
From Bacillus Cereus Atcc 10987
Length = 105
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 66 TFSSLDDLLQKSDKPVLVDFY--ATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--EKY 121
TF ++++L ++ LV + CG C L +V L++ V KI+ +
Sbjct: 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCD---VXLRKVNYVLENYNYVEKIEILLQDX 60
Query: 122 PQIADTYRIEALPTFILFKDGKP---SDRFVSQFNI 154
+IA Y + PT +LF +GK RF+S N+
Sbjct: 61 QEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENL 96
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
SL L+ K+ V + F A+WC PC+ P+L E
Sbjct: 22 SLGSLVGKT---VFLYFSASWCPPCRGFTPVLAE 52
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 83 VDFYATWCGPCQYMAPI---LNEVGAALKDKIQVVKID--TEKYPQIADTYRIEALPTFI 137
V+F+A+WCG C AP L E A + + + +D E + + I PT
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 138 LF 139
F
Sbjct: 95 FF 96
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNE-VGAALKDKIQVVKIDTEKYPQIADTYR 129
L Q K VLV+F+A+WC C+ P + V + K + V+ ++ EK + + YR
Sbjct: 36 LAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEK--RFPEKYR 91
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 78 DKPVLVDFYATWCGPCQYMAP 98
K +V+F+ATWC PC+ P
Sbjct: 34 GKAYIVNFFATWCPPCRSEIP 54
>pdb|3IRA|A Chain A, The Crystal Structure Of One Domain Of The Conserved
Protein From Methanosarcina Mazei Go1
Length = 173
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
+K +KPV + + C C MA EV + + +K+D E+ P I + Y
Sbjct: 36 RKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYM-- 93
Query: 132 ALPTFILFKDGKPSDRFVSQFNIVFFV 158
+ IL + G P + ++ FF
Sbjct: 94 TVCQIILGRGGWPLNIIMTPGKKPFFA 120
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
Length = 134
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 73 LLQKSDKPVLVDFYATWC 90
L++ KPV++D YA WC
Sbjct: 26 LVEAKGKPVMLDLYADWC 43
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 79 KPVLVDFYATWCGPCQYMAP 98
K V ++F+ TWC PC+ P
Sbjct: 27 KGVFLNFWGTWCEPCKKEFP 46
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAA 106
KP ++ F+ WC C AP L++V AA
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
V+FY+ C C +AP E + +++ ++ + + + P+ +F+
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 177
Query: 142 G 142
G
Sbjct: 178 G 178
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEV 103
KP LV+ + TWC C+ P L +
Sbjct: 59 KPALVNVWGTWCPSCRVEHPELTRL 83
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
D+ S K V F A+WC PC+ P L E
Sbjct: 42 DMDSLSGKTVFFYFSASWCPPCRGFTPQLVE 72
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 34/94 (36%)
Query: 79 KPVLVDFYATWCGPCQ----YMAP------------ILNEVGAALKDKIQV--------- 113
K V ++F+ TWC P + YMA + VG + KI V
Sbjct: 27 KGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVNVGES---KIAVHNFMKSYGV 83
Query: 114 ---VKIDTEKYPQIADTYRIEALP-TFILFKDGK 143
V +DT++ Q+ D Y + LP TF++ +GK
Sbjct: 84 NFPVVLDTDR--QVLDAYDVSPLPTTFLINPEGK 115
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 34/94 (36%)
Query: 79 KPVLVDFYATWCGPCQ----YMAP------------ILNEVGAALKDKIQV--------- 113
K V ++F+ TW PC+ YMA + VG + KI V
Sbjct: 27 KGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVAVNVGES---KIAVHNFMKSYGV 83
Query: 114 ---VKIDTEKYPQIADTYRIEALP-TFILFKDGK 143
V +DT++ Q+ D Y + LP TF++ +GK
Sbjct: 84 NFPVVLDTDR--QVLDAYDVSPLPTTFLINPEGK 115
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 85 FYATWCGPCQYMAPILNEVGAALKD 109
F A WC PC+ PIL ++ + L D
Sbjct: 33 FSAHWCPPCRGFTPILADMYSELVD 57
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNE 102
S P++V + +WCG C+ + P E
Sbjct: 38 SGLPLMVIIHKSWCGACKALKPKFAE 63
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
KPVL++ +ATWC + LN++ A I+VV ++ + Q A ++
Sbjct: 27 KPVLLNVWATWCPTSRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISW 73
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNE 102
S P++V + +WCG C+ + P E
Sbjct: 45 SGLPLMVIIHKSWCGACKALKPKFAE 70
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137
KP ++ F+A+WC C+ P L+ V V+ + ++ Y ++ P FI
Sbjct: 31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEY-MKTYPRFI 88
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 21 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 57
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 21 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 57
>pdb|2L73|A Chain A, Structure Of The Noxo1b Px Domain
Length = 149
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 64 KQTFSSLDDLLQKSDK--PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
K+TF LL++SD+ P L+D AP+L VG + ++ ++T
Sbjct: 58 KETFPVEAGLLRRSDRVLPKLLD------------APLLGRVGRTSRGLARLQLLETYSR 105
Query: 122 PQIADTYRIEALPTFILFKDGKPSD 146
+A R+ PT F +P D
Sbjct: 106 RLLATAERVARSPTITGFFAPQPLD 130
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 38 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 74
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK 110
SL+D K VLVDF+ C C+ P L + A KDK
Sbjct: 23 SLNDF---KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,656,345
Number of Sequences: 62578
Number of extensions: 130723
Number of successful extensions: 611
Number of sequences better than 100.0: 207
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 216
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)