Query 030351
Match_columns 179
No_of_seqs 170 out of 1817
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 8.1E-28 1.8E-32 170.2 12.2 107 59-165 42-149 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.9 1.4E-24 3E-29 149.2 10.6 91 67-157 2-93 (114)
3 PHA02278 thioredoxin-like prot 99.9 5E-24 1.1E-28 144.9 11.9 95 66-161 3-101 (103)
4 cd03065 PDI_b_Calsequestrin_N 99.9 1E-23 2.2E-28 146.8 12.3 103 61-164 10-119 (120)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 6.5E-24 1.4E-28 146.6 10.7 97 62-158 11-110 (113)
6 PF00085 Thioredoxin: Thioredo 99.9 2.9E-23 6.3E-28 140.3 13.5 100 63-162 2-102 (103)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1E-23 2.2E-28 142.9 10.8 96 62-158 3-98 (101)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.2E-23 2.5E-28 143.3 10.9 97 62-158 3-101 (104)
9 cd02985 TRX_CDSP32 TRX family, 99.9 3.4E-23 7.3E-28 141.1 12.4 93 66-159 2-98 (103)
10 KOG0907 Thioredoxin [Posttrans 99.9 5.5E-23 1.2E-27 140.1 10.9 84 70-154 13-96 (106)
11 cd02965 HyaE HyaE family; HyaE 99.9 9.7E-23 2.1E-27 139.2 11.7 98 60-158 10-109 (111)
12 PRK09381 trxA thioredoxin; Pro 99.9 1.4E-22 3E-27 139.1 12.7 103 62-164 5-108 (109)
13 PLN00410 U5 snRNP protein, DIM 99.9 1.9E-22 4.2E-27 143.6 13.6 106 65-170 9-126 (142)
14 cd02956 ybbN ybbN protein fami 99.9 1.1E-22 2.4E-27 136.4 11.6 90 69-158 2-92 (96)
15 COG3118 Thioredoxin domain-con 99.9 1.1E-22 2.3E-27 158.3 10.7 105 62-166 25-132 (304)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 2.1E-22 4.5E-27 139.0 11.0 97 65-161 9-109 (111)
17 cd02948 TRX_NDPK TRX domain, T 99.9 6.6E-22 1.4E-26 134.4 12.2 94 65-161 5-100 (102)
18 PRK10996 thioredoxin 2; Provis 99.9 9.3E-22 2E-26 140.9 12.9 99 63-162 38-137 (139)
19 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.7E-22 1.2E-26 135.9 10.9 96 62-158 3-105 (108)
20 cd02999 PDI_a_ERp44_like PDIa 99.9 7.1E-22 1.5E-26 133.9 10.3 88 69-158 8-97 (100)
21 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.1E-21 2.4E-26 134.3 11.0 97 62-158 2-105 (109)
22 cd02994 PDI_a_TMX PDIa family, 99.9 2.1E-21 4.5E-26 131.4 11.4 93 62-158 3-96 (101)
23 PTZ00443 Thioredoxin domain-co 99.9 2.9E-21 6.2E-26 147.9 13.1 107 61-167 31-142 (224)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 2.8E-21 6E-26 130.7 11.4 95 62-158 2-99 (102)
25 cd02957 Phd_like Phosducin (Ph 99.9 7.9E-22 1.7E-26 136.4 8.7 92 61-154 5-98 (113)
26 TIGR01068 thioredoxin thioredo 99.9 8E-21 1.7E-25 127.7 12.5 96 66-161 2-98 (101)
27 cd02984 TRX_PICOT TRX domain, 99.9 7.5E-21 1.6E-25 127.6 11.5 89 67-155 2-91 (97)
28 cd03001 PDI_a_P5 PDIa family, 99.9 7.6E-21 1.6E-25 128.7 11.5 97 62-158 2-99 (103)
29 cd02950 TxlA TRX-like protein 99.9 1.1E-20 2.4E-25 135.7 12.1 97 68-165 11-111 (142)
30 cd02962 TMX2 TMX2 family; comp 99.9 1E-20 2.2E-25 136.9 11.9 92 60-151 28-127 (152)
31 cd02986 DLP Dim1 family, Dim1- 99.9 9.3E-21 2E-25 129.5 10.9 79 68-146 3-82 (114)
32 TIGR01126 pdi_dom protein disu 99.8 1.3E-20 2.8E-25 127.2 11.0 97 65-162 1-100 (102)
33 cd02949 TRX_NTR TRX domain, no 99.8 2.1E-20 4.5E-25 125.8 11.8 89 70-158 5-93 (97)
34 cd02997 PDI_a_PDIR PDIa family 99.8 1.9E-20 4.2E-25 126.9 11.4 96 62-158 2-101 (104)
35 cd02989 Phd_like_TxnDC9 Phosdu 99.8 2.8E-20 6E-25 128.7 11.1 88 66-155 11-98 (113)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 4E-20 8.6E-25 125.2 10.1 96 62-158 2-101 (104)
37 cd02998 PDI_a_ERp38 PDIa famil 99.8 4.4E-20 9.4E-25 125.2 10.1 96 63-158 3-102 (105)
38 cd02993 PDI_a_APS_reductase PD 99.8 9.7E-20 2.1E-24 125.2 11.0 97 62-158 3-106 (109)
39 cd02953 DsbDgamma DsbD gamma f 99.8 5.5E-20 1.2E-24 125.1 9.1 90 68-158 2-100 (104)
40 cd02951 SoxW SoxW family; SoxW 99.8 3E-19 6.4E-24 125.5 12.2 100 68-168 4-123 (125)
41 PTZ00051 thioredoxin; Provisio 99.8 2.9E-19 6.4E-24 120.1 10.9 86 66-153 7-92 (98)
42 cd03000 PDI_a_TMX3 PDIa family 99.8 3.6E-19 7.8E-24 121.2 11.4 88 68-158 7-97 (104)
43 cd02987 Phd_like_Phd Phosducin 99.8 1.6E-19 3.4E-24 134.0 9.6 93 59-153 61-156 (175)
44 cd02975 PfPDO_like_N Pyrococcu 99.8 6.7E-19 1.4E-23 121.8 11.5 93 70-164 15-110 (113)
45 cd02961 PDI_a_family Protein D 99.8 7.1E-19 1.5E-23 117.6 10.4 94 64-158 2-98 (101)
46 TIGR01295 PedC_BrcD bacterioci 99.8 1.4E-18 3.1E-23 121.6 12.2 97 61-160 7-119 (122)
47 KOG0908 Thioredoxin-like prote 99.8 8.1E-19 1.8E-23 133.1 8.9 101 66-167 8-109 (288)
48 cd02992 PDI_a_QSOX PDIa family 99.8 1.6E-18 3.4E-23 120.1 9.0 83 62-144 3-90 (114)
49 cd02947 TRX_family TRX family; 99.8 9.9E-18 2.1E-22 110.0 11.4 88 69-158 2-89 (93)
50 PTZ00102 disulphide isomerase; 99.7 1.4E-17 3.1E-22 140.7 12.0 107 60-166 357-467 (477)
51 KOG0190 Protein disulfide isom 99.7 7.6E-18 1.6E-22 140.3 9.1 109 57-166 22-134 (493)
52 cd02988 Phd_like_VIAF Phosduci 99.7 1.3E-17 2.8E-22 125.3 9.6 92 58-153 80-173 (192)
53 PTZ00062 glutaredoxin; Provisi 99.7 2.6E-17 5.6E-22 124.3 11.1 90 65-163 4-93 (204)
54 TIGR01130 ER_PDI_fam protein d 99.7 2.9E-17 6.3E-22 137.9 12.2 103 62-165 3-110 (462)
55 TIGR00424 APS_reduc 5'-adenyly 99.7 2.8E-17 6E-22 137.3 11.7 100 60-159 351-457 (463)
56 cd02952 TRP14_like Human TRX-r 99.7 3E-17 6.6E-22 113.9 9.7 82 64-145 6-103 (119)
57 PLN02309 5'-adenylylsulfate re 99.7 5E-17 1.1E-21 135.8 12.6 104 59-162 344-455 (457)
58 PRK15412 thiol:disulfide inter 99.7 1.2E-16 2.6E-21 119.6 13.0 112 55-169 43-181 (185)
59 PTZ00102 disulphide isomerase; 99.7 5.7E-17 1.2E-21 137.1 12.0 106 61-168 33-142 (477)
60 cd02959 ERp19 Endoplasmic reti 99.7 1.5E-17 3.2E-22 115.7 6.0 92 67-158 8-106 (117)
61 TIGR00411 redox_disulf_1 small 99.7 1.5E-16 3.2E-21 103.3 10.2 74 81-158 2-75 (82)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.7 6.9E-17 1.5E-21 111.4 8.8 95 62-161 3-113 (116)
63 cd02982 PDI_b'_family Protein 99.7 2.5E-16 5.4E-21 106.6 9.0 85 78-162 12-101 (103)
64 cd03010 TlpA_like_DsbE TlpA-li 99.7 7.7E-16 1.7E-20 108.2 10.0 79 77-157 24-126 (127)
65 TIGR00385 dsbE periplasmic pro 99.7 1.5E-15 3.2E-20 112.5 11.9 107 55-164 38-171 (173)
66 PRK14018 trifunctional thiored 99.7 1.4E-15 3E-20 128.8 12.8 102 55-159 36-167 (521)
67 cd02955 SSP411 TRX domain, SSP 99.6 2.2E-15 4.8E-20 105.6 11.0 102 66-168 4-122 (124)
68 KOG0190 Protein disulfide isom 99.6 3.1E-16 6.6E-21 130.8 7.0 98 62-161 368-470 (493)
69 PF13098 Thioredoxin_2: Thiore 99.6 6.2E-16 1.3E-20 106.2 7.1 84 76-159 3-110 (112)
70 TIGR01130 ER_PDI_fam protein d 99.6 1.5E-15 3.2E-20 127.6 10.5 102 61-164 347-454 (462)
71 TIGR02187 GlrX_arch Glutaredox 99.6 2.6E-15 5.7E-20 114.9 10.8 87 78-164 19-111 (215)
72 cd03008 TryX_like_RdCVF Trypar 99.6 2.3E-15 5E-20 108.2 9.4 72 76-147 23-128 (146)
73 TIGR02738 TrbB type-F conjugat 99.6 4.9E-15 1.1E-19 107.5 10.0 83 78-162 50-151 (153)
74 PLN02399 phospholipid hydroper 99.6 1E-14 2.2E-19 112.6 11.7 112 52-164 74-234 (236)
75 PRK03147 thiol-disulfide oxido 99.6 1.8E-14 3.9E-19 106.2 12.2 107 53-160 37-167 (173)
76 PRK00293 dipZ thiol:disulfide 99.6 7.8E-15 1.7E-19 126.6 11.4 92 66-158 459-563 (571)
77 PHA02125 thioredoxin-like prot 99.6 7.8E-15 1.7E-19 94.1 8.5 62 82-152 2-63 (75)
78 PF13905 Thioredoxin_8: Thiore 99.6 9.6E-15 2.1E-19 97.5 8.8 67 78-144 1-95 (95)
79 TIGR02187 GlrX_arch Glutaredox 99.6 2.3E-14 5E-19 109.7 12.0 80 78-161 133-213 (215)
80 KOG4277 Uncharacterized conser 99.6 3.2E-15 6.9E-20 116.7 7.2 86 78-164 43-131 (468)
81 KOG0912 Thiol-disulfide isomer 99.6 5.1E-15 1.1E-19 115.5 7.4 100 66-166 2-108 (375)
82 TIGR02740 TraF-like TraF-like 99.6 3.8E-14 8.2E-19 111.9 12.2 85 77-163 165-263 (271)
83 PRK11509 hydrogenase-1 operon 99.6 9.1E-14 2E-18 97.7 12.1 103 66-169 23-129 (132)
84 cd02964 TryX_like_family Trypa 99.6 2E-14 4.2E-19 101.9 8.7 71 77-147 16-115 (132)
85 cd03009 TryX_like_TryX_NRX Try 99.6 2.7E-14 5.8E-19 100.9 9.1 71 77-147 17-115 (131)
86 TIGR01626 ytfJ_HI0045 conserve 99.6 5.4E-14 1.2E-18 104.6 10.9 102 63-168 45-183 (184)
87 KOG0191 Thioredoxin/protein di 99.6 3.1E-14 6.6E-19 117.7 10.5 102 67-168 36-138 (383)
88 TIGR00412 redox_disulf_2 small 99.5 4.4E-14 9.5E-19 90.9 8.4 70 82-158 2-72 (76)
89 PLN02919 haloacid dehalogenase 99.5 6.4E-14 1.4E-18 128.1 12.6 88 77-164 419-536 (1057)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 9E-14 1.9E-18 96.9 9.9 96 60-158 3-119 (123)
91 PTZ00056 glutathione peroxidas 99.5 8.4E-14 1.8E-18 105.4 10.4 111 55-166 17-180 (199)
92 PRK13728 conjugal transfer pro 99.5 2.6E-13 5.7E-18 100.4 12.3 83 82-166 73-173 (181)
93 cd02958 UAS UAS family; UAS is 99.5 2.6E-13 5.7E-18 93.8 11.5 97 68-164 7-111 (114)
94 cd02967 mauD Methylamine utili 99.5 6.7E-14 1.4E-18 96.3 7.7 71 77-147 20-111 (114)
95 PF08534 Redoxin: Redoxin; In 99.5 8.4E-14 1.8E-18 100.0 8.3 78 76-153 26-136 (146)
96 cd02966 TlpA_like_family TlpA- 99.5 1.4E-13 3E-18 93.5 8.9 74 77-150 18-116 (116)
97 KOG1731 FAD-dependent sulfhydr 99.5 5.3E-14 1.1E-18 117.8 6.5 85 56-140 35-124 (606)
98 cd02973 TRX_GRX_like Thioredox 99.5 2.6E-13 5.7E-18 84.8 8.2 61 81-144 2-62 (67)
99 PLN02412 probable glutathione 99.5 4.9E-13 1.1E-17 98.5 11.0 111 55-166 7-166 (167)
100 cd03012 TlpA_like_DipZ_like Tl 99.5 4.1E-13 8.9E-18 94.3 9.4 75 77-151 22-125 (126)
101 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 9.2E-13 2E-17 87.2 9.8 75 78-157 12-86 (89)
102 TIGR02661 MauD methylamine deh 99.4 8.2E-13 1.8E-17 99.2 9.8 104 53-158 48-172 (189)
103 cd02960 AGR Anterior Gradient 99.4 6.4E-13 1.4E-17 93.4 7.4 87 66-153 11-101 (130)
104 COG2143 Thioredoxin-related pr 99.4 8.9E-12 1.9E-16 88.7 10.8 98 74-171 38-155 (182)
105 KOG0191 Thioredoxin/protein di 99.4 2.1E-12 4.5E-17 106.9 8.7 106 61-166 145-254 (383)
106 cd00340 GSH_Peroxidase Glutath 99.3 4.4E-12 9.6E-17 91.9 8.3 81 77-158 21-149 (152)
107 TIGR02540 gpx7 putative glutat 99.3 1.8E-11 3.9E-16 88.8 10.4 86 77-162 21-151 (153)
108 cd02969 PRX_like1 Peroxiredoxi 99.3 2.6E-11 5.6E-16 89.5 11.2 71 77-147 24-125 (171)
109 COG4232 Thiol:disulfide interc 99.3 9.8E-12 2.1E-16 105.1 9.8 89 69-158 464-561 (569)
110 smart00594 UAS UAS domain. 99.3 2.8E-11 6.1E-16 84.7 10.6 93 66-158 15-118 (122)
111 PF13899 Thioredoxin_7: Thiore 99.3 1.1E-11 2.5E-16 80.6 6.3 70 70-140 9-81 (82)
112 cd03017 PRX_BCP Peroxiredoxin 99.3 3.8E-11 8.2E-16 85.4 9.5 82 77-158 22-136 (140)
113 PTZ00256 glutathione peroxidas 99.3 3.3E-11 7.2E-16 90.0 9.0 109 55-164 18-181 (183)
114 KOG2501 Thioredoxin, nucleored 99.3 2.5E-11 5.4E-16 87.1 7.8 70 77-146 32-130 (157)
115 PRK09437 bcp thioredoxin-depen 99.3 1E-10 2.2E-15 84.8 10.9 109 55-164 8-152 (154)
116 COG0526 TrxA Thiol-disulfide i 99.2 4.9E-11 1.1E-15 80.5 8.3 81 78-158 32-117 (127)
117 PRK00522 tpx lipid hydroperoxi 99.2 9.7E-11 2.1E-15 86.3 10.1 109 54-164 21-165 (167)
118 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 8.4E-11 1.8E-15 81.7 7.2 90 56-146 4-123 (124)
119 cd03014 PRX_Atyp2cys Peroxired 99.2 2.5E-10 5.5E-15 81.6 9.1 95 56-152 5-130 (143)
120 PF14595 Thioredoxin_9: Thiore 99.1 2.8E-10 6E-15 80.3 7.1 90 66-157 29-122 (129)
121 cd03015 PRX_Typ2cys Peroxiredo 99.1 1.7E-09 3.7E-14 80.0 10.8 76 77-152 28-140 (173)
122 cd02970 PRX_like2 Peroxiredoxi 99.1 1.4E-09 3E-14 77.8 9.5 43 78-120 23-67 (149)
123 TIGR03137 AhpC peroxiredoxin. 99.1 1.1E-09 2.3E-14 82.1 9.1 74 77-150 30-137 (187)
124 cd03018 PRX_AhpE_like Peroxire 99.1 1.7E-09 3.8E-14 77.6 9.4 95 57-152 7-134 (149)
125 PF03190 Thioredox_DsbH: Prote 99.0 1.6E-09 3.4E-14 78.8 8.8 103 66-170 26-146 (163)
126 cd02971 PRX_family Peroxiredox 99.0 1.6E-09 3.5E-14 76.9 8.6 77 77-153 21-131 (140)
127 PF06110 DUF953: Eukaryotic pr 99.0 2.4E-09 5.2E-14 74.2 9.1 77 66-142 4-99 (119)
128 KOG3414 Component of the U4/U6 99.0 7.8E-09 1.7E-13 71.0 11.1 104 67-170 11-126 (142)
129 cd02968 SCO SCO (an acronym fo 99.0 1.5E-09 3.2E-14 77.3 7.2 61 58-119 3-68 (142)
130 KOG0914 Thioredoxin-like prote 99.0 7E-10 1.5E-14 83.2 5.3 83 67-149 132-222 (265)
131 PF02114 Phosducin: Phosducin; 99.0 1.8E-09 3.9E-14 84.9 7.4 90 61-152 126-218 (265)
132 cd01659 TRX_superfamily Thiore 99.0 3.9E-09 8.5E-14 63.4 7.0 60 82-142 1-63 (69)
133 TIGR02200 GlrX_actino Glutared 98.9 2.1E-09 4.5E-14 68.5 5.1 58 82-146 2-64 (77)
134 TIGR02196 GlrX_YruB Glutaredox 98.9 6.4E-09 1.4E-13 65.3 7.2 65 82-158 2-70 (74)
135 PRK13190 putative peroxiredoxi 98.9 2.4E-08 5.3E-13 75.7 11.0 87 77-163 26-153 (202)
136 PRK10606 btuE putative glutath 98.9 1.1E-08 2.3E-13 76.4 8.6 43 76-119 23-66 (183)
137 cd02991 UAS_ETEA UAS family, E 98.9 7.3E-08 1.6E-12 66.8 11.9 97 67-164 6-113 (116)
138 PRK15000 peroxidase; Provision 98.9 2.2E-08 4.8E-13 75.9 9.6 75 77-151 33-144 (200)
139 KOG0913 Thiol-disulfide isomer 98.9 1.1E-09 2.4E-14 82.9 2.4 103 61-167 25-129 (248)
140 PF13728 TraF: F plasmid trans 98.8 4.4E-08 9.6E-13 75.0 10.6 79 78-158 120-211 (215)
141 PRK10382 alkyl hydroperoxide r 98.8 2.5E-08 5.5E-13 74.7 9.0 74 77-150 30-137 (187)
142 KOG3425 Uncharacterized conser 98.8 1.3E-08 2.9E-13 69.4 6.3 76 66-141 11-104 (128)
143 KOG1672 ATP binding protein [P 98.8 1.8E-08 3.9E-13 74.4 7.2 85 66-152 73-157 (211)
144 TIGR02180 GRX_euk Glutaredoxin 98.8 2E-08 4.4E-13 65.0 6.0 60 82-145 1-65 (84)
145 PF07449 HyaE: Hydrogenase-1 e 98.8 4.5E-08 9.8E-13 66.4 7.8 94 63-157 12-107 (107)
146 KOG0911 Glutaredoxin-related p 98.7 7.1E-09 1.5E-13 78.2 3.4 92 76-168 15-106 (227)
147 cd03016 PRX_1cys Peroxiredoxin 98.7 2.6E-07 5.7E-12 70.1 11.6 72 79-150 26-135 (203)
148 PRK13599 putative peroxiredoxi 98.7 2.2E-07 4.8E-12 71.1 11.1 73 77-149 27-136 (215)
149 TIGR02739 TraF type-F conjugat 98.7 2.7E-07 5.9E-12 72.1 11.2 85 78-164 150-248 (256)
150 PF02966 DIM1: Mitosis protein 98.7 1.2E-06 2.5E-11 61.1 12.8 103 67-170 8-123 (133)
151 PF13192 Thioredoxin_3: Thiore 98.7 3.1E-07 6.6E-12 58.8 9.1 68 84-158 4-72 (76)
152 PTZ00137 2-Cys peroxiredoxin; 98.7 2.6E-07 5.7E-12 72.5 10.5 94 53-148 70-204 (261)
153 PRK13189 peroxiredoxin; Provis 98.7 4.9E-07 1.1E-11 69.6 11.3 73 77-149 34-143 (222)
154 PRK10877 protein disulfide iso 98.6 1.4E-07 3E-12 73.1 7.8 74 78-158 107-224 (232)
155 PRK13703 conjugal pilus assemb 98.6 7.4E-07 1.6E-11 69.3 11.3 86 78-165 143-242 (248)
156 PRK13191 putative peroxiredoxi 98.6 9.2E-07 2E-11 67.7 10.6 74 77-150 32-142 (215)
157 PRK11200 grxA glutaredoxin 1; 98.6 3.1E-07 6.7E-12 59.9 6.7 62 81-145 2-69 (85)
158 COG1225 Bcp Peroxiredoxin [Pos 98.5 2.2E-06 4.8E-11 62.1 10.1 113 53-166 6-154 (157)
159 cd03019 DsbA_DsbA DsbA family, 98.5 2.1E-06 4.6E-11 63.2 10.0 40 77-116 14-53 (178)
160 PF13848 Thioredoxin_6: Thiore 98.5 2.9E-06 6.3E-11 62.6 10.6 100 62-161 79-183 (184)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 98.4 7.4E-07 1.6E-11 67.2 7.0 73 78-158 77-194 (197)
162 PTZ00253 tryparedoxin peroxida 98.4 1.9E-06 4.2E-11 65.1 9.2 74 77-150 35-145 (199)
163 PRK11657 dsbG disulfide isomer 98.4 2E-06 4.3E-11 67.4 8.8 79 78-159 117-246 (251)
164 cd03023 DsbA_Com1_like DsbA fa 98.4 3E-06 6.5E-11 60.6 8.9 37 78-115 5-41 (154)
165 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.9E-06 4.2E-11 53.7 6.8 51 82-138 2-56 (73)
166 TIGR03143 AhpF_homolog putativ 98.4 4.1E-06 8.9E-11 72.7 11.1 76 78-158 475-551 (555)
167 PF11009 DUF2847: Protein of u 98.3 1.1E-05 2.4E-10 54.5 9.6 92 66-157 6-104 (105)
168 PRK15317 alkyl hydroperoxide r 98.3 8.3E-06 1.8E-10 70.2 11.0 76 78-158 116-191 (517)
169 PF13462 Thioredoxin_4: Thiore 98.3 1.7E-05 3.6E-10 57.4 10.9 41 78-118 12-54 (162)
170 PF00462 Glutaredoxin: Glutare 98.3 4.3E-06 9.4E-11 50.7 6.4 55 82-144 1-59 (60)
171 PF01216 Calsequestrin: Calseq 98.3 1.6E-05 3.5E-10 63.9 11.0 106 60-168 34-148 (383)
172 cd03419 GRX_GRXh_1_2_like Glut 98.2 3.8E-06 8.2E-11 54.0 5.9 57 82-144 2-63 (82)
173 TIGR02183 GRXA Glutaredoxin, G 98.2 4.6E-06 1E-10 54.6 5.9 60 82-144 2-67 (86)
174 TIGR02190 GlrX-dom Glutaredoxi 98.2 7.3E-06 1.6E-10 52.7 6.4 60 78-145 6-68 (79)
175 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 2E-05 4.4E-10 54.1 8.7 100 63-165 2-109 (111)
176 PRK10954 periplasmic protein d 98.1 2.2E-05 4.8E-10 59.7 9.2 40 78-117 37-79 (207)
177 cd02066 GRX_family Glutaredoxi 98.1 1.2E-05 2.5E-10 49.8 6.3 57 82-146 2-62 (72)
178 cd02983 P5_C P5 family, C-term 98.1 6.1E-05 1.3E-09 53.2 10.5 92 78-169 20-120 (130)
179 TIGR03140 AhpF alkyl hydropero 98.1 3.9E-05 8.4E-10 66.1 11.1 76 78-158 117-192 (515)
180 PHA03050 glutaredoxin; Provisi 98.1 7E-06 1.5E-10 56.1 4.8 59 82-145 15-80 (108)
181 TIGR02189 GlrX-like_plant Glut 98.1 5.5E-06 1.2E-10 55.7 4.2 56 82-145 10-72 (99)
182 TIGR02194 GlrX_NrdH Glutaredox 98.0 2.7E-05 5.8E-10 49.1 6.6 50 83-138 2-54 (72)
183 TIGR03143 AhpF_homolog putativ 98.0 9.1E-05 2E-09 64.4 10.7 100 67-167 354-457 (555)
184 PRK10329 glutaredoxin-like pro 97.9 0.00016 3.5E-09 46.7 8.5 51 82-138 3-56 (81)
185 PF05768 DUF836: Glutaredoxin- 97.9 5.4E-05 1.2E-09 48.9 6.1 74 82-158 2-77 (81)
186 TIGR02181 GRX_bact Glutaredoxi 97.8 5.7E-05 1.2E-09 48.3 5.7 55 82-144 1-59 (79)
187 cd02972 DsbA_family DsbA famil 97.8 7.2E-05 1.6E-09 48.8 6.3 59 82-140 1-91 (98)
188 cd03418 GRX_GRXb_1_3_like Glut 97.8 0.00012 2.5E-09 46.1 6.9 56 82-145 2-62 (75)
189 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00021 4.6E-09 49.1 8.1 95 65-162 4-109 (111)
190 cd03027 GRX_DEP Glutaredoxin ( 97.7 0.00019 4E-09 45.2 6.9 56 82-145 3-62 (73)
191 cd03029 GRX_hybridPRX5 Glutare 97.7 0.0002 4.4E-09 44.9 6.7 56 82-145 3-61 (72)
192 cd03013 PRX5_like Peroxiredoxi 97.6 0.0008 1.7E-08 48.8 9.8 42 78-119 29-74 (155)
193 cd02981 PDI_b_family Protein D 97.6 0.0011 2.3E-08 43.8 9.5 86 67-160 7-94 (97)
194 COG1331 Highly conserved prote 97.6 0.00032 7E-09 61.2 8.3 103 65-169 31-151 (667)
195 KOG2603 Oligosaccharyltransfer 97.6 0.0004 8.7E-09 55.2 8.2 78 62-139 42-133 (331)
196 KOG3171 Conserved phosducin-li 97.6 0.00017 3.7E-09 54.4 5.3 84 64-149 143-228 (273)
197 PRK10638 glutaredoxin 3; Provi 97.5 0.00015 3.2E-09 46.9 4.3 56 82-145 4-63 (83)
198 COG0695 GrxC Glutaredoxin and 97.5 0.00025 5.5E-09 45.7 5.3 51 82-138 3-59 (80)
199 cd03028 GRX_PICOT_like Glutare 97.5 0.00047 1E-08 45.4 6.2 59 79-145 8-74 (90)
200 PF00837 T4_deiodinase: Iodoth 97.5 0.0012 2.6E-08 50.9 9.2 67 52-118 74-142 (237)
201 TIGR00365 monothiol glutaredox 97.5 0.00093 2E-08 44.7 7.4 66 70-145 5-78 (97)
202 PRK10824 glutaredoxin-4; Provi 97.4 0.0013 2.7E-08 45.5 7.9 68 69-146 7-82 (115)
203 PF13743 Thioredoxin_5: Thiore 97.3 0.001 2.3E-08 49.3 7.0 33 84-116 2-34 (176)
204 KOG1752 Glutaredoxin and relat 97.2 0.0026 5.7E-08 43.1 7.3 68 69-145 6-78 (104)
205 PTZ00062 glutaredoxin; Provisi 96.9 0.005 1.1E-07 46.8 7.6 66 70-145 106-179 (204)
206 PF01323 DSBA: DSBA-like thior 96.9 0.014 3.1E-07 43.2 9.7 36 81-116 1-37 (193)
207 PF07912 ERp29_N: ERp29, N-ter 96.9 0.048 1E-06 37.9 11.3 95 64-161 8-116 (126)
208 PRK12759 bifunctional gluaredo 96.9 0.0031 6.7E-08 52.9 6.6 54 82-143 4-69 (410)
209 KOG3170 Conserved phosducin-li 96.8 0.0033 7.2E-08 47.1 5.5 90 60-153 91-182 (240)
210 COG0386 BtuE Glutathione perox 96.4 0.016 3.4E-07 41.8 6.6 91 74-165 21-161 (162)
211 PF13848 Thioredoxin_6: Thiore 96.4 0.035 7.6E-07 40.6 8.9 65 95-163 7-74 (184)
212 cd03067 PDI_b_PDIR_N PDIb fami 96.4 0.036 7.7E-07 37.2 7.5 93 64-158 6-105 (112)
213 COG1999 Uncharacterized protei 96.3 0.049 1.1E-06 41.5 9.3 106 59-165 49-205 (207)
214 cd02974 AhpF_NTD_N Alkyl hydro 96.2 0.092 2E-06 34.8 8.9 82 68-162 8-92 (94)
215 KOG0855 Alkyl hydroperoxide re 96.1 0.033 7.1E-07 40.8 6.7 94 52-145 64-188 (211)
216 COG1651 DsbG Protein-disulfide 96.0 0.058 1.3E-06 41.7 8.7 32 78-109 84-115 (244)
217 COG0450 AhpC Peroxiredoxin [Po 95.8 0.062 1.3E-06 40.3 7.5 71 78-148 33-140 (194)
218 PF02630 SCO1-SenC: SCO1/SenC; 95.8 0.052 1.1E-06 40.1 7.2 66 53-119 28-97 (174)
219 PRK15317 alkyl hydroperoxide r 95.7 0.1 2.2E-06 45.1 9.7 88 67-166 7-96 (517)
220 KOG2792 Putative cytochrome C 95.5 0.088 1.9E-06 41.1 7.6 89 78-166 139-277 (280)
221 TIGR03140 AhpF alkyl hydropero 95.5 0.15 3.2E-06 44.1 9.8 90 67-167 7-98 (515)
222 cd03031 GRX_GRX_like Glutaredo 95.1 0.077 1.7E-06 38.2 5.8 75 82-167 2-93 (147)
223 cd03066 PDI_b_Calsequestrin_mi 95.0 0.66 1.4E-05 30.9 10.0 89 66-161 7-98 (102)
224 cd02990 UAS_FAF1 UAS family, F 94.3 1.3 2.9E-05 31.4 12.0 89 76-164 19-133 (136)
225 cd02978 KaiB_like KaiB-like fa 94.0 0.19 4E-06 31.7 5.0 58 81-138 3-61 (72)
226 cd03060 GST_N_Omega_like GST_N 94.0 0.21 4.5E-06 30.8 5.2 57 83-144 2-59 (71)
227 KOG2640 Thioredoxin [Function 93.6 0.028 6.1E-07 44.9 0.9 86 78-164 76-162 (319)
228 COG2761 FrnE Predicted dithiol 93.5 1.2 2.6E-05 34.3 9.5 41 125-169 177-218 (225)
229 KOG1651 Glutathione peroxidase 93.4 0.67 1.5E-05 33.9 7.5 59 60-119 17-76 (171)
230 KOG2507 Ubiquitin regulatory p 93.3 1 2.2E-05 37.8 9.4 87 76-162 16-109 (506)
231 cd03069 PDI_b_ERp57 PDIb famil 93.3 1.7 3.6E-05 29.1 9.4 87 66-161 7-101 (104)
232 TIGR02654 circ_KaiB circadian 92.9 0.52 1.1E-05 30.8 5.8 74 80-154 4-78 (87)
233 PF06053 DUF929: Domain of unk 92.9 0.42 9E-06 37.4 6.3 56 76-139 56-112 (249)
234 PRK09301 circadian clock prote 92.7 0.53 1.2E-05 31.7 5.8 77 78-155 5-82 (103)
235 COG4545 Glutaredoxin-related p 92.6 0.11 2.3E-06 32.9 2.2 56 83-145 5-76 (85)
236 cd03037 GST_N_GRX2 GST_N famil 91.5 0.4 8.6E-06 29.4 4.0 55 84-143 3-57 (71)
237 cd03074 PDI_b'_Calsequestrin_C 90.9 3.7 7.9E-05 28.0 9.7 76 64-139 5-88 (120)
238 cd03041 GST_N_2GST_N GST_N fam 90.8 0.5 1.1E-05 29.6 4.0 54 83-142 3-60 (77)
239 PF04592 SelP_N: Selenoprotein 90.7 2.6 5.6E-05 32.7 8.4 47 73-119 21-71 (238)
240 PHA03075 glutaredoxin-like pro 90.7 0.34 7.4E-06 33.2 3.2 30 79-108 2-31 (123)
241 cd03040 GST_N_mPGES2 GST_N fam 90.2 0.57 1.2E-05 29.1 3.9 53 82-139 2-54 (77)
242 cd00570 GST_N_family Glutathio 90.1 0.97 2.1E-05 26.6 4.8 51 84-138 3-55 (71)
243 cd02977 ArsC_family Arsenate R 90.0 0.3 6.4E-06 32.8 2.5 55 83-143 2-61 (105)
244 PF09673 TrbC_Ftype: Type-F co 89.6 1.6 3.4E-05 29.9 5.9 45 95-141 36-80 (113)
245 TIGR01617 arsC_related transcr 88.8 0.69 1.5E-05 31.7 3.7 34 83-122 2-35 (117)
246 PF06491 Disulph_isomer: Disul 88.4 7 0.00015 27.5 10.1 106 66-172 23-136 (136)
247 TIGR02742 TrbC_Ftype type-F co 88.1 3.5 7.5E-05 29.1 6.9 36 121-156 60-106 (130)
248 COG3019 Predicted metal-bindin 88.1 6 0.00013 28.2 8.0 71 80-161 26-100 (149)
249 cd03051 GST_N_GTT2_like GST_N 88.1 0.88 1.9E-05 27.7 3.6 52 83-138 2-57 (74)
250 cd03036 ArsC_like Arsenate Red 87.2 0.75 1.6E-05 31.3 3.0 55 83-143 2-61 (111)
251 cd03025 DsbA_FrnE_like DsbA fa 86.8 1.3 2.8E-05 32.6 4.4 30 82-111 3-32 (193)
252 PF09822 ABC_transp_aux: ABC-t 86.5 14 0.0003 29.0 11.0 62 72-133 18-89 (271)
253 PF04134 DUF393: Protein of un 86.3 0.88 1.9E-05 30.8 3.0 57 85-143 2-61 (114)
254 PF13417 GST_N_3: Glutathione 86.0 3.6 7.7E-05 25.4 5.6 56 84-145 1-57 (75)
255 COG3531 Predicted protein-disu 85.8 1.8 3.9E-05 32.7 4.6 43 122-164 164-209 (212)
256 PRK01655 spxA transcriptional 85.3 1.2 2.7E-05 31.2 3.5 33 82-120 2-34 (131)
257 PF00255 GSHPx: Glutathione pe 85.0 1.6 3.6E-05 29.6 3.8 44 76-120 19-63 (108)
258 cd03045 GST_N_Delta_Epsilon GS 84.5 2.2 4.8E-05 26.0 4.1 51 83-137 2-56 (74)
259 PRK00366 ispG 4-hydroxy-3-meth 84.4 2.3 5E-05 35.0 5.0 62 90-151 271-343 (360)
260 PF07689 KaiB: KaiB domain; I 83.7 0.31 6.8E-06 31.5 -0.2 53 85-137 3-56 (82)
261 cd03055 GST_N_Omega GST_N fami 82.9 3.1 6.7E-05 26.8 4.4 53 82-138 19-72 (89)
262 cd03024 DsbA_FrnE DsbA family, 82.4 1.6 3.6E-05 32.3 3.3 33 122-158 165-197 (201)
263 cd03059 GST_N_SspA GST_N famil 81.9 2 4.3E-05 26.1 3.1 51 83-137 2-53 (73)
264 cd03035 ArsC_Yffb Arsenate Red 81.6 1.1 2.3E-05 30.3 1.8 32 83-120 2-33 (105)
265 KOG2244 Highly conserved prote 78.8 4.6 9.9E-05 35.3 5.0 77 66-143 101-189 (786)
266 cd03022 DsbA_HCCA_Iso DsbA fam 78.2 3.4 7.3E-05 30.3 3.8 31 123-158 158-188 (192)
267 cd03032 ArsC_Spx Arsenate Redu 77.6 4.7 0.0001 27.4 4.1 34 82-121 2-35 (115)
268 cd03068 PDI_b_ERp72 PDIb famil 76.1 21 0.00045 23.9 9.6 67 66-139 7-73 (107)
269 cd03025 DsbA_FrnE_like DsbA fa 74.9 4.2 9.2E-05 29.8 3.5 21 123-143 160-180 (193)
270 COG0821 gcpE 1-hydroxy-2-methy 74.8 10 0.00022 31.1 5.8 79 89-167 263-354 (361)
271 COG3634 AhpF Alkyl hydroperoxi 74.8 15 0.00032 30.7 6.7 83 70-157 108-190 (520)
272 KOG1364 Predicted ubiquitin re 73.6 6 0.00013 32.4 4.2 57 111-167 133-192 (356)
273 PRK12559 transcriptional regul 73.1 3.2 7E-05 29.1 2.3 21 82-102 2-22 (131)
274 PF13778 DUF4174: Domain of un 73.0 27 0.00059 23.9 8.3 73 89-161 21-109 (118)
275 COG5309 Exo-beta-1,3-glucanase 72.9 9.9 0.00022 30.3 5.1 87 78-169 74-166 (305)
276 PF01216 Calsequestrin: Calseq 71.8 57 0.0012 27.1 9.7 111 62-172 251-372 (383)
277 cd03052 GST_N_GDAP1 GST_N fami 71.1 14 0.00031 22.7 4.8 56 83-144 2-61 (73)
278 KOG0852 Alkyl hydroperoxide re 70.5 35 0.00076 25.5 7.2 68 77-144 32-136 (196)
279 COG3011 Predicted thiol-disulf 70.1 20 0.00043 25.5 5.7 66 78-145 6-73 (137)
280 PRK13730 conjugal transfer pil 69.9 12 0.00026 28.4 4.9 35 121-156 151-185 (212)
281 PF09695 YtfJ_HI0045: Bacteria 69.2 23 0.0005 25.9 6.0 89 78-166 37-159 (160)
282 cd03056 GST_N_4 GST_N family, 69.0 6.7 0.00014 23.6 2.9 51 84-138 3-57 (73)
283 PRK13344 spxA transcriptional 63.3 6.6 0.00014 27.6 2.3 21 82-102 2-22 (132)
284 KOG0854 Alkyl hydroperoxide re 60.7 16 0.00035 27.3 3.9 49 69-120 25-76 (224)
285 PF04551 GcpE: GcpE protein; 58.4 12 0.00025 31.0 3.1 68 90-157 271-351 (359)
286 PF05988 DUF899: Bacterial pro 58.0 83 0.0018 24.1 7.8 79 68-146 58-169 (211)
287 COG0278 Glutaredoxin-related p 56.8 58 0.0013 21.9 6.4 71 68-145 6-82 (105)
288 PF05176 ATP-synt_10: ATP10 pr 56.1 98 0.0021 24.3 8.0 110 54-165 98-250 (252)
289 PF11287 DUF3088: Protein of u 56.0 19 0.0004 24.7 3.3 50 90-140 24-76 (112)
290 cd07973 Spt4 Transcription elo 52.9 25 0.00054 23.5 3.5 69 85-162 18-93 (98)
291 cd03033 ArsC_15kD Arsenate Red 52.7 14 0.0003 25.2 2.4 21 82-102 2-22 (113)
292 cd03021 DsbA_GSTK DsbA family, 52.6 22 0.00047 26.7 3.7 43 120-165 167-209 (209)
293 COG2077 Tpx Peroxiredoxin [Pos 51.0 47 0.001 24.1 4.8 65 53-119 20-85 (158)
294 cd03030 GRX_SH3BGR Glutaredoxi 50.3 40 0.00086 22.1 4.2 34 110-145 30-71 (92)
295 cd03053 GST_N_Phi GST_N family 49.5 56 0.0012 19.6 5.2 52 82-137 2-57 (76)
296 PF06764 DUF1223: Protein of u 49.4 1.1E+02 0.0025 23.1 8.5 77 83-166 3-100 (202)
297 PF04908 SH3BGR: SH3-binding, 48.1 20 0.00044 23.9 2.6 66 84-149 4-81 (99)
298 TIGR02743 TraW type-F conjugat 48.0 59 0.0013 24.7 5.3 40 100-145 158-197 (202)
299 PRK09481 sspA stringent starva 47.3 44 0.00095 24.9 4.7 56 78-137 7-63 (211)
300 cd03058 GST_N_Tau GST_N family 47.0 61 0.0013 19.5 4.6 50 84-137 3-54 (74)
301 PRK13738 conjugal transfer pil 46.5 49 0.0011 25.3 4.7 40 101-145 157-197 (209)
302 COG3054 Predicted transcriptio 45.8 1.2E+02 0.0025 22.2 6.3 42 127-168 140-183 (184)
303 PF06616 BsuBI_PstI_RE: BsuBI/ 45.1 99 0.0021 25.2 6.4 83 91-174 162-261 (306)
304 TIGR00612 ispG_gcpE 1-hydroxy- 44.5 46 0.001 27.4 4.5 64 86-149 261-333 (346)
305 COG5429 Uncharacterized secret 42.7 95 0.0021 24.4 5.7 66 79-146 42-125 (261)
306 cd03022 DsbA_HCCA_Iso DsbA fam 42.2 40 0.00087 24.4 3.7 33 84-116 3-35 (192)
307 COG0525 ValS Valyl-tRNA synthe 42.1 63 0.0014 30.2 5.5 23 88-110 173-195 (877)
308 cd03049 GST_N_3 GST_N family, 41.6 77 0.0017 18.9 4.6 57 84-143 3-60 (73)
309 cd03061 GST_N_CLIC GST_N famil 41.3 1E+02 0.0022 20.2 6.0 46 88-137 20-66 (91)
310 COG4604 CeuD ABC-type enteroch 40.7 76 0.0016 24.6 4.8 50 90-147 168-217 (252)
311 COG3531 Predicted protein-disu 40.5 41 0.00089 25.6 3.4 29 80-108 2-30 (212)
312 KOG0912 Thiol-disulfide isomer 40.5 1.4E+02 0.003 24.6 6.5 66 60-128 210-278 (375)
313 COG4752 Uncharacterized protei 37.5 45 0.00097 24.2 3.0 29 64-92 119-147 (190)
314 KOG1371 UDP-glucose 4-epimeras 37.2 1.6E+02 0.0035 24.3 6.5 63 72-140 21-85 (343)
315 TIGR02652 conserved hypothetic 35.8 14 0.0003 26.3 0.3 12 89-100 11-22 (163)
316 PF09654 DUF2396: Protein of u 35.6 14 0.0003 26.3 0.2 12 89-100 8-19 (161)
317 PRK10387 glutaredoxin 2; Provi 35.2 75 0.0016 23.4 4.3 56 84-144 3-58 (210)
318 PF09936 Methyltrn_RNA_4: SAM- 35.1 43 0.00093 25.0 2.8 26 64-89 118-143 (185)
319 cd03034 ArsC_ArsC Arsenate Red 32.5 35 0.00075 23.0 1.8 21 83-103 2-22 (112)
320 TIGR00014 arsC arsenate reduct 31.6 36 0.00079 23.0 1.8 20 83-102 2-21 (114)
321 COG3411 Ferredoxin [Energy pro 31.3 1.2E+02 0.0027 18.5 3.8 30 133-166 17-47 (64)
322 TIGR03107 glu_aminopep glutamy 30.8 3.1E+02 0.0067 22.7 7.7 91 78-169 249-339 (350)
323 PF14437 MafB19-deam: MafB19-l 30.5 1.9E+02 0.0042 20.8 5.4 36 78-116 99-135 (146)
324 PHA03308 transcriptional regul 30.2 33 0.00072 31.3 1.7 27 83-109 1345-1371(1463)
325 TIGR02182 GRXB Glutaredoxin, G 30.1 1E+02 0.0022 23.0 4.2 54 85-143 3-56 (209)
326 PF07700 HNOB: Heme NO binding 30.0 1.3E+02 0.0028 21.8 4.7 42 78-119 127-169 (171)
327 PF07315 DUF1462: Protein of u 29.2 1.7E+02 0.0037 19.2 8.5 69 85-157 3-88 (93)
328 COG2326 Uncharacterized conser 29.2 3E+02 0.0064 22.0 6.7 86 70-158 64-160 (270)
329 TIGR00216 ispH_lytB (E)-4-hydr 28.9 1.3E+02 0.0029 24.0 4.8 102 61-165 160-278 (280)
330 COG1393 ArsC Arsenate reductas 28.1 60 0.0013 22.3 2.4 23 82-104 3-25 (117)
331 PF03227 GILT: Gamma interfero 28.0 1.1E+02 0.0025 20.3 3.8 29 82-110 3-34 (108)
332 cd03024 DsbA_FrnE DsbA family, 27.3 92 0.002 22.7 3.6 25 84-108 3-27 (201)
333 PRK01045 ispH 4-hydroxy-3-meth 27.2 1.5E+02 0.0032 24.0 4.8 102 63-167 164-282 (298)
334 PF00352 TBP: Transcription fa 26.9 1.7E+02 0.0036 18.6 4.3 24 133-158 49-72 (86)
335 cd03050 GST_N_Theta GST_N fami 26.1 1.5E+02 0.0033 17.7 5.1 50 84-137 3-56 (76)
336 KOG1420 Ca2+-activated K+ chan 25.8 52 0.0011 29.4 2.1 9 81-89 141-149 (1103)
337 PF14424 Toxin-deaminase: The 25.4 2.3E+02 0.0049 19.9 5.0 27 83-113 99-127 (133)
338 PF10589 NADH_4Fe-4S: NADH-ubi 24.8 47 0.001 18.7 1.2 21 88-108 17-37 (46)
339 PHA02131 hypothetical protein 24.8 1.6E+02 0.0035 17.5 4.3 39 129-168 25-63 (70)
340 TIGR03759 conj_TIGR03759 integ 24.7 1.6E+02 0.0035 22.3 4.3 36 79-118 109-144 (200)
341 COG5575 ORC2 Origin recognitio 24.3 1.2E+02 0.0026 25.7 3.8 47 92-142 242-289 (535)
342 KOG1422 Intracellular Cl- chan 23.8 3.4E+02 0.0075 20.9 6.1 46 89-138 20-66 (221)
343 cd06537 CIDE_N_B CIDE_N domain 23.4 1.3E+02 0.0027 19.4 3.0 24 123-146 29-52 (81)
344 cd06538 CIDE_N_FSP27 CIDE_N do 23.0 1.3E+02 0.0028 19.3 3.0 24 123-146 29-52 (79)
345 cd03044 GST_N_EF1Bgamma GST_N 23.0 1.8E+02 0.0039 17.4 3.9 55 84-143 3-60 (75)
346 PF02702 KdpD: Osmosensitive K 22.8 3.6E+02 0.0077 20.7 8.6 99 77-176 3-125 (211)
347 PF04900 Fcf1: Fcf1; InterPro 22.6 81 0.0018 20.7 2.2 23 119-141 71-94 (101)
348 TIGR01616 nitro_assoc nitrogen 22.1 94 0.002 21.6 2.5 22 82-103 3-24 (126)
349 PRK10853 putative reductase; P 21.6 81 0.0018 21.6 2.1 21 82-102 2-22 (118)
350 PRK12360 4-hydroxy-3-methylbut 21.5 3.6E+02 0.0078 21.6 6.0 100 63-165 165-279 (281)
351 PF14307 Glyco_tran_WbsX: Glyc 21.2 1.6E+02 0.0035 24.1 4.1 41 78-118 158-199 (345)
352 PF08806 Sep15_SelM: Sep15/Sel 21.1 1.9E+02 0.0042 18.2 3.6 26 133-158 42-69 (78)
353 cd03038 GST_N_etherase_LigE GS 20.8 95 0.0021 19.2 2.2 47 87-137 13-62 (84)
354 PRK10026 arsenate reductase; P 20.1 98 0.0021 22.0 2.3 22 82-103 4-25 (141)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.1e-28 Score=170.22 Aligned_cols=107 Identities=37% Similarity=0.708 Sum_probs=99.6
Q ss_pred ceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
......++.++|++.+.+.+.||+|+|||+||++|+.+.|.++++..++.+++.+++||+|++.+++.+|+|..+||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 139 FKDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 139 ~~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
|+||+.++++.|..+.+.+. +|+++++
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999999999986 6665543
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=1.4e-24 Score=149.19 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=82.5
Q ss_pred hhhHHHHHhc-CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 67 FSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 67 ~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
.++|++.+.. .+++++|.|||+||++|+.|.|.++++++++++.+.|++||+|+++++.++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4567777764 578999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred eEEeCCCCHHHH
Q 030351 146 DRFVSQFNIVFF 157 (179)
Q Consensus 146 ~~~~G~~~~~~~ 157 (179)
.+..|..+...+
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 999887665544
No 3
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=5e-24 Score=144.92 Aligned_cols=95 Identities=18% Similarity=0.352 Sum_probs=84.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc----hHHHHhcCCCCCcEEEEEeC
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.++|++.+ ..+++++|+|||+||++|+.+.|.++++++++...+.|+.+|+|.+ .+++++|+|.++||+++|++
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 456788887 4678999999999999999999999999988655578999999986 68999999999999999999
Q ss_pred CeeeeEEeCCCCHHHHHHHH
Q 030351 142 GKPSDRFVSQFNIVFFVFLE 161 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~~~i~ 161 (179)
|+.++++.|..+.+.+..++
T Consensus 82 G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred CEEEEEEeCCCCHHHHHhhh
Confidence 99999999999888886554
No 4
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=1e-23 Score=146.76 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=92.8
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChh--hc--cchHHHHHHHHHh--cCCeEEEEEeCCCchHHHHhcCCCCCc
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGP--CQ--YMAPILNEVGAAL--KDKIQVVKIDTEKYPQIADTYRIEALP 134 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~--C~--~~~p~l~~~~~~~--~~~v~~~~vd~d~~~~l~~~~~v~~~P 134 (179)
.+..++.++|++.+.+.+.++|++||+.||++ |+ .+.|.+.++++++ .+++.|++||+|++++++++|+|+++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 34556789999999998999999999999987 99 8999999999998 777999999999999999999999999
Q ss_pred EEEEEeCCeeeeEEeCCCCHHHHH-HHHHHH
Q 030351 135 TFILFKDGKPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 135 t~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
|+++|++|+.+. +.|.++.+.+. +|++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 99999998886 666554
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=6.5e-24 Score=146.60 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=87.8
Q ss_pred ccccChhhHHHHH--hcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHH-HhcCCCCCcEEEE
Q 030351 62 AKKQTFSSLDDLL--QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA-DTYRIEALPTFIL 138 (179)
Q Consensus 62 ~~~~~~~~~~~~~--~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~-~~~~v~~~Pt~~~ 138 (179)
+.+++.++|++.+ .+.+++++|.|||+||++|+.+.|.++++++++++.+.|+.||++++.+++ ++|+|.++||+++
T Consensus 11 v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 11 VLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred eEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEE
Confidence 4566778888763 366889999999999999999999999999999988999999999999999 5899999999999
Q ss_pred EeCCeeeeEEeCCCCHHHHH
Q 030351 139 FKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 139 ~~~G~~~~~~~G~~~~~~~~ 158 (179)
|++|+...++.|.++.+.+.
T Consensus 91 f~~g~~~~~y~G~~~~~~i~ 110 (113)
T cd03006 91 YYRSRGPIEYKGPMRAPYME 110 (113)
T ss_pred EECCccceEEeCCCCHHHHH
Confidence 99999999999999988875
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=2.9e-23 Score=140.29 Aligned_cols=100 Identities=33% Similarity=0.719 Sum_probs=93.2
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 142 (179)
..++.++|++.+...+++++|+||++||++|+.+.|.|+++++++++++.|+.||++++.+++++|+|.++||+++|++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 45688899999987789999999999999999999999999999997899999999999999999999999999999999
Q ss_pred eeeeEEeCCCCHHHHH-HHHH
Q 030351 143 KPSDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 143 ~~~~~~~G~~~~~~~~-~i~~ 162 (179)
+...++.|..+.+.+. +|++
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc
Confidence 9999999999998886 6654
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1e-23 Score=142.91 Aligned_cols=96 Identities=16% Similarity=0.356 Sum_probs=88.5
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.+++.++|++.+. .+++++|+||++||++|+.+.|.++++++++++.+.|+.||+++++.++++|+|.++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 45678889998884 46899999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeeeeEEeCCCCHHHHH
Q 030351 142 GKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~~ 158 (179)
|+.+.++.|..+.+.+.
T Consensus 82 g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 82 GMNPEKYYGDRSKESLV 98 (101)
T ss_pred CCCcccCCCCCCHHHHH
Confidence 99999999999988775
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=1.2e-23 Score=143.25 Aligned_cols=97 Identities=31% Similarity=0.563 Sum_probs=88.8
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.+++.++|++.+...+++++|.||++||++|+.+.|.++++++++++.+.|+.||++++.+++++|+|.++||+++|++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcC
Confidence 45678889999988888899999999999999999999999999998889999999999999999999999999999987
Q ss_pred C-eeeeEEeCCCC-HHHHH
Q 030351 142 G-KPSDRFVSQFN-IVFFV 158 (179)
Q Consensus 142 G-~~~~~~~G~~~-~~~~~ 158 (179)
| +.+.++.|..+ .+.+.
T Consensus 83 g~~~~~~~~G~~~~~~~l~ 101 (104)
T cd03004 83 NASKYHSYNGWHRDADSIL 101 (104)
T ss_pred CCCCceEccCCCCCHHHHH
Confidence 7 88899999886 77764
No 9
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=3.4e-23 Score=141.07 Aligned_cols=93 Identities=16% Similarity=0.316 Sum_probs=82.2
Q ss_pred ChhhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---HHHHhcCCCCCcEEEEEeC
Q 030351 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFILFKD 141 (179)
Q Consensus 66 ~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.++|++.+... +++++|+||++||++|+.+.|.|+++++++ +.+.|+.||+|++. +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 457888888754 899999999999999999999999999999 46999999999874 8999999999999999999
Q ss_pred CeeeeEEeCCCCHHHHHH
Q 030351 142 GKPSDRFVSQFNIVFFVF 159 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~~~ 159 (179)
|+++.++.|..+.+....
T Consensus 81 G~~v~~~~G~~~~~l~~~ 98 (103)
T cd02985 81 GEKIHEEEGIGPDELIGD 98 (103)
T ss_pred CeEEEEEeCCCHHHHHHH
Confidence 999999999877554433
No 10
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-23 Score=140.08 Aligned_cols=84 Identities=33% Similarity=0.756 Sum_probs=77.6
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEe
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFV 149 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~ 149 (179)
........++++||+|||+||++|+.+.|.+++++.+|++ +.|+.||+|+..+++++++|..+|||+||++|+.+.++.
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~v 91 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVV 91 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEe
Confidence 3344445579999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCH
Q 030351 150 SQFNI 154 (179)
Q Consensus 150 G~~~~ 154 (179)
|....
T Consensus 92 Ga~~~ 96 (106)
T KOG0907|consen 92 GANKA 96 (106)
T ss_pred cCCHH
Confidence 99776
No 11
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=9.7e-23 Score=139.21 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=89.7
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCC--ChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATW--CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~w--C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
....+++..+|++.+ ..+.++||.||++| ||+|+.+.|.|+++++++++.+.|+.||+|++++++.+|+|.++||++
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 344567888999888 56779999999997 999999999999999999988999999999999999999999999999
Q ss_pred EEeCCeeeeEEeCCCCHHHHH
Q 030351 138 LFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 138 ~~~~G~~~~~~~G~~~~~~~~ 158 (179)
+|++|+.++++.|..+++++.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999999999999999988764
No 12
>PRK09381 trxA thioredoxin; Provisional
Probab=99.90 E-value=1.4e-22 Score=139.13 Aligned_cols=103 Identities=35% Similarity=0.677 Sum_probs=92.1
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.+++.++|++.+...+++++|+||++||++|+.+.|.++++++++++++.++.+|++.+..++++|+|+++||+++|++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 84 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeC
Confidence 45567788888776778899999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeeeeEEeCCCCHHHHH-HHHHHH
Q 030351 142 GKPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
|+.+.++.|..+.+.+. +|++.+
T Consensus 85 G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 85 GEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999998888775 555543
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=1.9e-22 Score=143.57 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=92.7
Q ss_pred cChhhHHHHHh-cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEE-EEeCC
Q 030351 65 QTFSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI-LFKDG 142 (179)
Q Consensus 65 ~~~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~-~~~~G 142 (179)
.+.++|++.+. .+++++||.|||+||++|+.+.|.|+++++++++.+.|+.||+|+++++++.|+|++.|+++ ||++|
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 35778888886 45789999999999999999999999999999987999999999999999999999887766 78999
Q ss_pred e-eeeEEeC--------CCCHHHHH-HHHHHHHHHhcc
Q 030351 143 K-PSDRFVS--------QFNIVFFV-FLENLICASLQN 170 (179)
Q Consensus 143 ~-~~~~~~G--------~~~~~~~~-~i~~~i~~~~~~ 170 (179)
+ .+.+..| ..+.+++. .++..++++.++
T Consensus 89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g 126 (142)
T PLN00410 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
T ss_pred eEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 9 8899999 56777777 777888887774
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.89 E-value=1.1e-22 Score=136.39 Aligned_cols=90 Identities=30% Similarity=0.565 Sum_probs=83.0
Q ss_pred hHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeE
Q 030351 69 SLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147 (179)
Q Consensus 69 ~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 147 (179)
+|++.+.+. +++++|+||++||++|+.+.|.+++++.++.+.+.++.||++++.+++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566677544 7899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHH
Q 030351 148 FVSQFNIVFFV 158 (179)
Q Consensus 148 ~~G~~~~~~~~ 158 (179)
+.|..+.+.+.
T Consensus 82 ~~g~~~~~~l~ 92 (96)
T cd02956 82 FQGAQPEEQLR 92 (96)
T ss_pred ecCCCCHHHHH
Confidence 99999888775
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=158.33 Aligned_cols=105 Identities=33% Similarity=0.691 Sum_probs=97.2
Q ss_pred ccccChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 62 AKKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
+.++|..||.+.+..+ .+||+|+||+|||++|+++.|.|++++.++++++.+.+||+|+++.+..+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 7788999999888644 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeeeEEeCCCCHHHHH-HHHHHHHH
Q 030351 140 KDGKPSDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 140 ~~G~~~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
++|+.++.|.|..+++.+. |+++++..
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999998 77766554
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=2.1e-22 Score=138.96 Aligned_cols=97 Identities=21% Similarity=0.407 Sum_probs=85.5
Q ss_pred cChhhHHHHHh--cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 65 QTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 65 ~~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
++.++|++.+. ..+++++|+||++||++|+.+.|.++++++++++ ++.++.||+++++.++++|+|.++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 35667775543 3589999999999999999999999999999975 49999999999999999999999999999999
Q ss_pred CeeeeEEeCCCCHHHHH-HHH
Q 030351 142 GKPSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~~-~i~ 161 (179)
|+.+.++.|..+.+.+. +|+
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHh
Confidence 99999999999888875 554
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.88 E-value=6.6e-22 Score=134.43 Aligned_cols=94 Identities=21% Similarity=0.507 Sum_probs=81.6
Q ss_pred cChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCe
Q 030351 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 65 ~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
.+.++|++++. .+++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|+| +.+++++|+|+++||+++|++|+
T Consensus 5 ~~~~~~~~~i~-~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELLS-NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHHc-cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 46788888774 588999999999999999999999999999985 4889999999 67899999999999999999999
Q ss_pred eeeEEeCCCCHHHHH-HHH
Q 030351 144 PSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 144 ~~~~~~G~~~~~~~~-~i~ 161 (179)
.+.+..|. +.+.+. +|+
T Consensus 83 ~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEEEecC-ChHHHHHHHh
Confidence 99999997 444443 444
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.88 E-value=9.3e-22 Score=140.87 Aligned_cols=99 Identities=37% Similarity=0.743 Sum_probs=89.3
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 142 (179)
.+.+.++|++.+. .+++++|+||++||++|+.+.|.|+++++++.+++.|+.+|++++.+++++|+|.++||+++|++|
T Consensus 38 i~~~~~~~~~~i~-~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G 116 (139)
T PRK10996 38 INATGETLDKLLQ-DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNG 116 (139)
T ss_pred EEcCHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECC
Confidence 3467788988774 588999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eeeeEEeCCCCHHHHH-HHHH
Q 030351 143 KPSDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 143 ~~~~~~~G~~~~~~~~-~i~~ 162 (179)
+++.++.|..+.+.+. ++++
T Consensus 117 ~~v~~~~G~~~~e~l~~~l~~ 137 (139)
T PRK10996 117 QVVDMLNGAVPKAPFDSWLNE 137 (139)
T ss_pred EEEEEEcCCCCHHHHHHHHHH
Confidence 9999999999988775 4443
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=5.7e-22 Score=135.92 Aligned_cols=96 Identities=36% Similarity=0.622 Sum_probs=84.4
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC------CeEEEEEeCCCchHHHHhcCCCCCcE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD------KIQVVKIDTEKYPQIADTYRIEALPT 135 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~------~v~~~~vd~d~~~~l~~~~~v~~~Pt 135 (179)
+.+++.++|++.+ +.+++++|.||++||++|+++.|.|+++++++++ ++.++.||++++.+++++|+|+++||
T Consensus 3 v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 3 IVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred eEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 4567889999887 5578999999999999999999999999987632 48999999999999999999999999
Q ss_pred EEEEeCCee-eeEEeCCCCHHHHH
Q 030351 136 FILFKDGKP-SDRFVSQFNIVFFV 158 (179)
Q Consensus 136 ~~~~~~G~~-~~~~~G~~~~~~~~ 158 (179)
+++|++|++ ..++.|..+.+.+.
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~ 105 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALA 105 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHH
Confidence 999999994 47888998888775
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=7.1e-22 Score=133.86 Aligned_cols=88 Identities=23% Similarity=0.452 Sum_probs=78.7
Q ss_pred hHHHHHh-cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC-CchHHHHhcCCCCCcEEEEEeCCeeee
Q 030351 69 SLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-KYPQIADTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 69 ~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
++.+++. .+|++++|.|||+||++|+.+.|.|+++++++++ +.++.||.+ ++++++++|+|.++||+++|++| .+.
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee
Confidence 4444544 5689999999999999999999999999999975 889999999 78999999999999999999999 888
Q ss_pred EEeCCCCHHHHH
Q 030351 147 RFVSQFNIVFFV 158 (179)
Q Consensus 147 ~~~G~~~~~~~~ 158 (179)
++.|..+.+.+.
T Consensus 86 ~~~G~~~~~~l~ 97 (100)
T cd02999 86 RYNGTRTLDSLA 97 (100)
T ss_pred EecCCCCHHHHH
Confidence 999999988775
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.87 E-value=1.1e-21 Score=134.30 Aligned_cols=97 Identities=23% Similarity=0.533 Sum_probs=87.0
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC--chHHHHhcCCCCCcEEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--YPQIADTYRIEALPTFILF 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~ 139 (179)
+.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++++.+.+.++.+|+++ +.+++++|+|.++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 34678889999998889999999999999999999999999999998889999999998 8899999999999999999
Q ss_pred eCCe-----eeeEEeCCCCHHHHH
Q 030351 140 KDGK-----PSDRFVSQFNIVFFV 158 (179)
Q Consensus 140 ~~G~-----~~~~~~G~~~~~~~~ 158 (179)
++|+ ...++.|..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~ 105 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIV 105 (109)
T ss_pred eCCCcccccccccccCccCHHHHH
Confidence 7775 456788988888775
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=2.1e-21 Score=131.44 Aligned_cols=93 Identities=28% Similarity=0.474 Sum_probs=82.1
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEEe
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 140 (179)
+.+++.++|++.+. ++ ++|+||++||++|+.+.|.|+++++++++ ++.++.+|+++++.++++|+|.++||+++++
T Consensus 3 v~~l~~~~f~~~~~--~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 3 VVELTDSNWTLVLE--GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred eEEcChhhHHHHhC--CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 44678889998762 33 78999999999999999999999998764 5999999999999999999999999999999
Q ss_pred CCeeeeEEeCCCCHHHHH
Q 030351 141 DGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 141 ~G~~~~~~~G~~~~~~~~ 158 (179)
+|+. .++.|..+.+.+.
T Consensus 80 ~g~~-~~~~G~~~~~~l~ 96 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLI 96 (101)
T ss_pred CCCE-EEecCCCCHHHHH
Confidence 9984 7899999988875
No 23
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=2.9e-21 Score=147.92 Aligned_cols=107 Identities=26% Similarity=0.441 Sum_probs=95.1
Q ss_pred eccccChhhHHHHHhcC----CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEE
Q 030351 61 EAKKQTFSSLDDLLQKS----DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~----~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 136 (179)
.+.+++.++|++.+... +++++|+||++||++|+.+.|.|+++++++++.+.++.+|++++.+++++|+|.++||+
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 46677889999987643 58999999999999999999999999999998899999999999999999999999999
Q ss_pred EEEeCCeeeeEEeCCCCHHHHH-HHHHHHHHH
Q 030351 137 ILFKDGKPSDRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 137 ~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
++|++|+.+.+..|..+.+.+. ++++..++.
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999999988888988888886 676666544
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=2.8e-21 Score=130.70 Aligned_cols=95 Identities=22% Similarity=0.589 Sum_probs=85.8
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
+.+++.++|++.+.+ + +++|.||++||++|+.+.|.++++++++++ .+.++.+|++.+..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 346788899998854 3 599999999999999999999999999976 69999999999999999999999999999
Q ss_pred EeCCeeeeEEeCCCCHHHHH
Q 030351 139 FKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 139 ~~~G~~~~~~~G~~~~~~~~ 158 (179)
|++|+.+.++.|..+.+.+.
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~ 99 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLK 99 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHH
Confidence 99999999999999988764
No 25
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.87 E-value=7.9e-22 Score=136.44 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=82.5
Q ss_pred eccccChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 61 EAKKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
.+.+++.++|.+.+... +++++|+||++||++|+.+.|.++++++++++ +.|+.||++++ +++++|+|.++||+++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 34556678999888765 48999999999999999999999999999975 89999999998 9999999999999999
Q ss_pred EeCCeeeeEEeCCCCH
Q 030351 139 FKDGKPSDRFVSQFNI 154 (179)
Q Consensus 139 ~~~G~~~~~~~G~~~~ 154 (179)
|++|+.+.++.|..+.
T Consensus 83 f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 83 YKNGELIDNIVGFEEL 98 (113)
T ss_pred EECCEEEEEEecHHHh
Confidence 9999999999996544
No 26
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.86 E-value=8e-21 Score=127.73 Aligned_cols=96 Identities=42% Similarity=0.843 Sum_probs=87.0
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+.++|.+.+...+++++|+||++||++|+.+.+.++++++++++++.|+.+|++++..++++|+|.++|++++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45778888877778999999999999999999999999999987799999999999999999999999999999999999
Q ss_pred eEEeCCCCHHHHH-HHH
Q 030351 146 DRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 146 ~~~~G~~~~~~~~-~i~ 161 (179)
.++.|..+.+.+. +|+
T Consensus 82 ~~~~g~~~~~~l~~~l~ 98 (101)
T TIGR01068 82 DRSVGALPKAALKQLIN 98 (101)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 9999999877775 444
No 27
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.86 E-value=7.5e-21 Score=127.58 Aligned_cols=89 Identities=26% Similarity=0.602 Sum_probs=80.7
Q ss_pred hhhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 67 FSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 67 ~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
.++|++.+... +++++|+||++||++|+.+.|.|+++++++...+.++.+|.+++.+++++|+|.++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46788888766 69999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred eEEeCCCCHH
Q 030351 146 DRFVSQFNIV 155 (179)
Q Consensus 146 ~~~~G~~~~~ 155 (179)
.++.|..+.+
T Consensus 82 ~~~~g~~~~~ 91 (97)
T cd02984 82 DRVSGADPKE 91 (97)
T ss_pred EEEeCCCHHH
Confidence 9999976543
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=7.6e-21 Score=128.75 Aligned_cols=97 Identities=29% Similarity=0.527 Sum_probs=87.6
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+.+++.++|++.+.+.+++++|.||++||++|+.+.|.|.++++++++.+.++.+|++++.+++++|+|.++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 45678889999988778889999999999999999999999999998889999999999999999999999999999988
Q ss_pred C-eeeeEEeCCCCHHHHH
Q 030351 142 G-KPSDRFVSQFNIVFFV 158 (179)
Q Consensus 142 G-~~~~~~~G~~~~~~~~ 158 (179)
| +....+.|..+.+.+.
T Consensus 82 ~~~~~~~~~g~~~~~~l~ 99 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIV 99 (103)
T ss_pred CCcceeecCCCCCHHHHH
Confidence 8 4556788998888775
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=1.1e-20 Score=135.73 Aligned_cols=97 Identities=26% Similarity=0.571 Sum_probs=82.5
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc--hHHHHhcCCCCCcEEEEE-eCCee
Q 030351 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY--PQIADTYRIEALPTFILF-KDGKP 144 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~-~~G~~ 144 (179)
..|++.+ ..++++||+||++||++|+.+.|.++++++++.+++.|+.||+|.+ .+++++|+|.++||+++| ++|++
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 3455544 5588999999999999999999999999999987788888888865 588999999999999999 69999
Q ss_pred eeEEeCCCCHHHHH-HHHHHHH
Q 030351 145 SDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 145 ~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
+.++.|..+.+.+. .|+.+++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 99999999888876 5555543
No 30
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=1e-20 Score=136.90 Aligned_cols=92 Identities=30% Similarity=0.591 Sum_probs=82.7
Q ss_pred eeccccChhhHHHHHhc-CCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCC-----
Q 030351 60 VEAKKQTFSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEA----- 132 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~----- 132 (179)
..+.+++.++|++.+.. .+++++|+||++||++|+.+.|.++++++++++ ++.|+.||+|++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 35566778899988754 467999999999999999999999999999874 59999999999999999999988
Q ss_pred -CcEEEEEeCCeeeeEEeCC
Q 030351 133 -LPTFILFKDGKPSDRFVSQ 151 (179)
Q Consensus 133 -~Pt~~~~~~G~~~~~~~G~ 151 (179)
+||+++|++|+++.++.|.
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 108 QLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CCCEEEEEECCEEEEEEecc
Confidence 9999999999999999984
No 31
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.85 E-value=9.3e-21 Score=129.47 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=72.1
Q ss_pred hhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeee
Q 030351 68 SSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 68 ~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
+++++.+... ++++||.|+|+||++|+.+.|.|+++++++++.+.|+.||+|+.+++++.|+|...||++||++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 4566666544 899999999999999999999999999999866999999999999999999999999999999998774
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.85 E-value=1.3e-20 Score=127.16 Aligned_cols=97 Identities=32% Similarity=0.641 Sum_probs=86.2
Q ss_pred cChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC
Q 030351 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (179)
Q Consensus 65 ~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 142 (179)
++.++|++.+. .+++++|.||++||++|+.+.+.++++++.+++ ++.++.+|++++..++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 35678888885 688999999999999999999999999999986 699999999999999999999999999999877
Q ss_pred eeeeEEeCCCCHHHHH-HHHH
Q 030351 143 KPSDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 143 ~~~~~~~G~~~~~~~~-~i~~ 162 (179)
+.+.++.|..+.+.+. +|++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred CcceeecCCCCHHHHHHHHHh
Confidence 7678899998888875 5554
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.85 E-value=2.1e-20 Score=125.81 Aligned_cols=89 Identities=29% Similarity=0.472 Sum_probs=83.0
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEe
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFV 149 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~ 149 (179)
++..+.+.+++++|+||++||+.|+.+.|.++++++++++++.++.+|+++++++..+++|.++|+++++++|+.+.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 45667778999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred CCCCHHHHH
Q 030351 150 SQFNIVFFV 158 (179)
Q Consensus 150 G~~~~~~~~ 158 (179)
|..+.+++.
T Consensus 85 g~~~~~~~~ 93 (97)
T cd02949 85 GVKMKSEYR 93 (97)
T ss_pred CCccHHHHH
Confidence 999988875
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=1.9e-20 Score=126.88 Aligned_cols=96 Identities=29% Similarity=0.567 Sum_probs=85.2
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc--CCeEEEEEeCCC--chHHHHhcCCCCCcEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEK--YPQIADTYRIEALPTFI 137 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~ 137 (179)
+.+++..+|++.+.+ +++++|+||++||++|+++.|.+++++++++ +.+.++.+|+++ +..++++|+|.++||++
T Consensus 2 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 345677788888755 5699999999999999999999999999987 568899999998 89999999999999999
Q ss_pred EEeCCeeeeEEeCCCCHHHHH
Q 030351 138 LFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 138 ~~~~G~~~~~~~G~~~~~~~~ 158 (179)
+|++|+.+.++.|..+.+.+.
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~ 101 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDII 101 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHH
Confidence 999999999999999887765
No 35
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.84 E-value=2.8e-20 Score=128.73 Aligned_cols=88 Identities=26% Similarity=0.432 Sum_probs=79.6
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+.++|.+.+.+ +++++|+||++||++|+.+.|.++++++++++ +.|+.||++++.++.++|+|.++||+++|++|+++
T Consensus 11 ~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 11 DEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 34788888854 57999999999999999999999999999875 99999999999999999999999999999999999
Q ss_pred eEEeCCCCHH
Q 030351 146 DRFVSQFNIV 155 (179)
Q Consensus 146 ~~~~G~~~~~ 155 (179)
+++.|..+..
T Consensus 89 ~~~~g~~~~~ 98 (113)
T cd02989 89 DRIVGFEELG 98 (113)
T ss_pred EEEECccccC
Confidence 9998876543
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=4e-20 Score=125.23 Aligned_cols=96 Identities=28% Similarity=0.633 Sum_probs=85.1
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
+.+++.++|++.+...+++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 346788899999888889999999999999999999999999999876 599999999987 68889999999999999
Q ss_pred eCCe--eeeEEeCCCCHHHHH
Q 030351 140 KDGK--PSDRFVSQFNIVFFV 158 (179)
Q Consensus 140 ~~G~--~~~~~~G~~~~~~~~ 158 (179)
++|+ ...++.|..+.+.+.
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~ 101 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLI 101 (104)
T ss_pred cCCCcCCceEccCCcCHHHHH
Confidence 8887 567889988887775
No 37
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=4.4e-20 Score=125.16 Aligned_cols=96 Identities=28% Similarity=0.613 Sum_probs=85.0
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc--CCeEEEEEeCCC-chHHHHhcCCCCCcEEEEE
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEK-YPQIADTYRIEALPTFILF 139 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~ 139 (179)
.+++.++|++.+...+++++|.||++||++|+.+.|.+++++++++ +++.++.+|++. +..++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 4567788988887778899999999999999999999999999987 469999999999 9999999999999999999
Q ss_pred eCC-eeeeEEeCCCCHHHHH
Q 030351 140 KDG-KPSDRFVSQFNIVFFV 158 (179)
Q Consensus 140 ~~G-~~~~~~~G~~~~~~~~ 158 (179)
++| +....+.|..+.+.+.
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~ 102 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLV 102 (105)
T ss_pred eCCCCCccccCCccCHHHHH
Confidence 655 6677788988877775
No 38
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=9.7e-20 Score=125.15 Aligned_cols=97 Identities=20% Similarity=0.468 Sum_probs=82.0
Q ss_pred ccccChhhHHHHHh--cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-chHHHH-hcCCCCCcEE
Q 030351 62 AKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-YPQIAD-TYRIEALPTF 136 (179)
Q Consensus 62 ~~~~~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-~~~l~~-~~~v~~~Pt~ 136 (179)
+.+++.++|+.++. +.+++++|.||++||++|+.+.|.|+++++++++ ++.++.||++. +..++. .|+|+++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 45678889998885 4589999999999999999999999999999986 49999999998 577886 5999999999
Q ss_pred EEEeC-CeeeeEEeCC-CCHHHHH
Q 030351 137 ILFKD-GKPSDRFVSQ-FNIVFFV 158 (179)
Q Consensus 137 ~~~~~-G~~~~~~~G~-~~~~~~~ 158 (179)
++|++ +.....+.|. ++.+.+.
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~ 106 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLL 106 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHH
Confidence 99954 4567778884 6777664
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.82 E-value=5.5e-20 Score=125.15 Aligned_cols=90 Identities=27% Similarity=0.500 Sum_probs=79.5
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCC----chHHHHhcCCCCCcEEEEEe
Q 030351 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~ 140 (179)
++|++.+ +.+++++|+||++||++|+.+.+.+ +++++.+.+++.++.+|+++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 4566666 4578999999999999999999988 68888888779999999987 57899999999999999996
Q ss_pred --CCeeeeEEeCCCCHHHHH
Q 030351 141 --DGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 141 --~G~~~~~~~G~~~~~~~~ 158 (179)
+|+.+.++.|..+.+++.
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~ 100 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFL 100 (104)
T ss_pred CCCCCCCcccccccCHHHHH
Confidence 899999999999998875
No 40
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.82 E-value=3e-19 Score=125.47 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=81.1
Q ss_pred hhHHHHHhcCC-CcEEEEEecCCChhhccchHHHH---HHHHHhcCCeEEEEEeCCCc-------------hHHHHhcCC
Q 030351 68 SSLDDLLQKSD-KPVLVDFYATWCGPCQYMAPILN---EVGAALKDKIQVVKIDTEKY-------------PQIADTYRI 130 (179)
Q Consensus 68 ~~~~~~~~~~~-k~vvv~F~a~wC~~C~~~~p~l~---~~~~~~~~~v~~~~vd~d~~-------------~~l~~~~~v 130 (179)
+.+++.. +++ ++++|+||++||++|+.+.+.+. ++.+.+.+++.++.+|++++ .+++.+|+|
T Consensus 4 ~~~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 3444455 446 89999999999999999999884 67666766788999999874 689999999
Q ss_pred CCCcEEEEEe-C-CeeeeEEeCCCCHHHHH-HHHHHHHHHh
Q 030351 131 EALPTFILFK-D-GKPSDRFVSQFNIVFFV-FLENLICASL 168 (179)
Q Consensus 131 ~~~Pt~~~~~-~-G~~~~~~~G~~~~~~~~-~i~~~i~~~~ 168 (179)
.++||+++++ + |+++.++.|..+.+.+. .|+.++.+.+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~ 123 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAY 123 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhh
Confidence 9999999994 5 69999999999988886 6666655544
No 41
>PTZ00051 thioredoxin; Provisional
Probab=99.81 E-value=2.9e-19 Score=120.07 Aligned_cols=86 Identities=31% Similarity=0.723 Sum_probs=77.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+.++|++++ ..+++++|+||++||++|+.+.+.++++++++++ +.|+.+|++++..++++|+|.++||+++|++|+++
T Consensus 7 ~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 7 SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 456777776 4578999999999999999999999999998875 99999999999999999999999999999999999
Q ss_pred eEEeCCCC
Q 030351 146 DRFVSQFN 153 (179)
Q Consensus 146 ~~~~G~~~ 153 (179)
+++.|...
T Consensus 85 ~~~~G~~~ 92 (98)
T PTZ00051 85 DTLLGAND 92 (98)
T ss_pred EEEeCCCH
Confidence 99999743
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.81 E-value=3.6e-19 Score=121.21 Aligned_cols=88 Identities=35% Similarity=0.655 Sum_probs=76.2
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee
Q 030351 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
++|++. .++++++|.||++||++|+.+.|.|+++++++++ .+.++.+|+++...++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 567664 3467999999999999999999999999999853 4889999999999999999999999999997774
Q ss_pred eeEEeCCCCHHHHH
Q 030351 145 SDRFVSQFNIVFFV 158 (179)
Q Consensus 145 ~~~~~G~~~~~~~~ 158 (179)
..++.|..+.+.+.
T Consensus 84 ~~~~~G~~~~~~l~ 97 (104)
T cd03000 84 AYNYRGPRTKDDIV 97 (104)
T ss_pred ceeecCCCCHHHHH
Confidence 56688988888775
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=1.6e-19 Score=133.96 Aligned_cols=93 Identities=19% Similarity=0.309 Sum_probs=82.0
Q ss_pred ceeccccCh-hhHHHHHhcCC--CcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcE
Q 030351 59 VVEAKKQTF-SSLDDLLQKSD--KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135 (179)
Q Consensus 59 ~~~~~~~~~-~~~~~~~~~~~--k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 135 (179)
...+.+++. ++|.+.+...+ +++||+||++||++|+.+.|.|++++.+++. +.|++||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCE
Confidence 344455566 88998887654 5999999999999999999999999999974 99999999987 8999999999999
Q ss_pred EEEEeCCeeeeEEeCCCC
Q 030351 136 FILFKDGKPSDRFVSQFN 153 (179)
Q Consensus 136 ~~~~~~G~~~~~~~G~~~ 153 (179)
+++|++|+.+.++.|...
T Consensus 139 lllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 139 LLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEEECCEEEEEEechHH
Confidence 999999999999988753
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.80 E-value=6.7e-19 Score=121.79 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=78.9
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeee--E
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD--R 147 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~--~ 147 (179)
|.+.+ .+++.++|+||++||++|+.+.|.++++++++ +.+.++.+|.|++++++.+|+|.++||+++|++|+... +
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 43434 34667889999999999999999999999987 46999999999999999999999999999998876554 7
Q ss_pred EeCCCCHHHHH-HHHHHH
Q 030351 148 FVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 148 ~~G~~~~~~~~-~i~~~i 164 (179)
+.|..+..++. +|+.++
T Consensus 93 ~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 93 YYGLPAGYEFASLIEDIV 110 (113)
T ss_pred EEecCchHHHHHHHHHHH
Confidence 88998888887 666554
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=7.1e-19 Score=117.63 Aligned_cols=94 Identities=31% Similarity=0.626 Sum_probs=83.6
Q ss_pred ccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHh--cCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL--KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 64 ~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~--~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
+++.++|.+.+.+.+ +++|+||++||++|+.+.+.++++++.+ .+++.++.+|++++..++++|+|+++||+++|++
T Consensus 2 ~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 456778988886644 9999999999999999999999999999 4679999999999999999999999999999976
Q ss_pred C-eeeeEEeCCCCHHHHH
Q 030351 142 G-KPSDRFVSQFNIVFFV 158 (179)
Q Consensus 142 G-~~~~~~~G~~~~~~~~ 158 (179)
| +...++.|..+.+.+.
T Consensus 81 ~~~~~~~~~g~~~~~~i~ 98 (101)
T cd02961 81 GSKEPVKYEGPRTLESLV 98 (101)
T ss_pred CCcccccCCCCcCHHHHH
Confidence 6 7888899988777764
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.80 E-value=1.4e-18 Score=121.65 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=78.5
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-----------HHHHhcC
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----------QIADTYR 129 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-----------~l~~~~~ 129 (179)
.+..++.++|.+.+.+ ++.++|+|+++|||+|+.+.|.|++++++. ++.++.||+|.+. ++.++|+
T Consensus 7 ~~~~it~~~~~~~i~~-~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 7 GLEVTTVVRALEALDK-KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cceecCHHHHHHHHHc-CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3456778888888854 668999999999999999999999999983 4778888888543 5556665
Q ss_pred ----CCCCcEEEEEeCCeeeeEEeCC-CCHHHHHHH
Q 030351 130 ----IEALPTFILFKDGKPSDRFVSQ-FNIVFFVFL 160 (179)
Q Consensus 130 ----v~~~Pt~~~~~~G~~~~~~~G~-~~~~~~~~i 160 (179)
|.++||+++|++|+.+.+..|. .+.++++.+
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHH
Confidence 5569999999999999999994 467777643
No 47
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.1e-19 Score=133.07 Aligned_cols=101 Identities=29% Similarity=0.516 Sum_probs=87.4
Q ss_pred ChhhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee
Q 030351 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 66 ~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
++.+|+..+... +|.++|.|+|+||++|+...|.+..++.+|++ .+|++||+|+.+..+..+||..+|||++|+||+.
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 566787777654 69999999999999999999999999999986 8899999999999999999999999999999999
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHH
Q 030351 145 SDRFVSQFNIVFFVFLENLICAS 167 (179)
Q Consensus 145 ~~~~~G~~~~~~~~~i~~~i~~~ 167 (179)
++.+.|......-..+.+++..+
T Consensus 87 id~~qGAd~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 87 IDQIQGADASGLEEKVAKYASTS 109 (288)
T ss_pred eeeecCCCHHHHHHHHHHHhccC
Confidence 99999996543333666666443
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=1.6e-18 Score=120.14 Aligned_cols=83 Identities=24% Similarity=0.494 Sum_probs=73.6
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCC--CchHHHHhcCCCCCcEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTE--KYPQIADTYRIEALPTF 136 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d--~~~~l~~~~~v~~~Pt~ 136 (179)
+.+++.++|++.+...+++++|+||++||++|+.+.|.|+++++++++ .+.+..+|++ .+.+++++|+|.++||+
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 456788999999988889999999999999999999999999998763 4889999975 46789999999999999
Q ss_pred EEEeCCee
Q 030351 137 ILFKDGKP 144 (179)
Q Consensus 137 ~~~~~G~~ 144 (179)
++|++|+.
T Consensus 83 ~lf~~~~~ 90 (114)
T cd02992 83 RYFPPFSK 90 (114)
T ss_pred EEECCCCc
Confidence 99988873
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.77 E-value=9.9e-18 Score=110.00 Aligned_cols=88 Identities=39% Similarity=0.862 Sum_probs=78.7
Q ss_pred hHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEE
Q 030351 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRF 148 (179)
Q Consensus 69 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 148 (179)
+|++.+... ++++|+||++||++|+.+.+.+++++++ .+++.++.+|++.+.+++++|++.++|+++++++|+.+.++
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 456666554 8999999999999999999999999998 55699999999999999999999999999999999999999
Q ss_pred eCCCCHHHHH
Q 030351 149 VSQFNIVFFV 158 (179)
Q Consensus 149 ~G~~~~~~~~ 158 (179)
.|..+.+.+.
T Consensus 80 ~g~~~~~~l~ 89 (93)
T cd02947 80 VGADPKEELE 89 (93)
T ss_pred ecCCCHHHHH
Confidence 9988876664
No 50
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=1.4e-17 Score=140.70 Aligned_cols=107 Identities=27% Similarity=0.525 Sum_probs=92.5
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
..+..++.++|++.+.+.+++++|+|||+||++|+.+.|.|+++++++++ .+.++.+|++.+...+++|+++++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 34667788999999888899999999999999999999999999999874 4889999999999999999999999999
Q ss_pred EEeCCeee-eEEeCCCCHHHHH-HHHHHHHH
Q 030351 138 LFKDGKPS-DRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 138 ~~~~G~~~-~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
+|++|+.+ .++.|.++.+.+. +|++....
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99777654 5899999998886 66655443
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.6e-18 Score=140.33 Aligned_cols=109 Identities=23% Similarity=0.504 Sum_probs=95.2
Q ss_pred CCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCC
Q 030351 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEAL 133 (179)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~ 133 (179)
.+...+..++.++|++.+.. +..++|.||||||+||+.+.|.+++.+..++. .+..+.||+.++.++|.+|+|+|+
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~-~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETING-HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred CcccceEEEecccHHHHhcc-CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 34455667788999999854 66899999999999999999999999999886 488999999999999999999999
Q ss_pred cEEEEEeCCeeeeEEeCCCCHHHHH-HHHHHHHH
Q 030351 134 PTFILFKDGKPSDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 134 Pt~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
||+.+|+||+....+.|.+..+.+. |+.+....
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhccCC
Confidence 9999999999877899999999987 66654433
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.74 E-value=1.3e-17 Score=125.26 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=79.9
Q ss_pred CceeccccChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcE
Q 030351 58 PVVEAKKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135 (179)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 135 (179)
....+.+++.++|...+... +++|||.||++||++|+.+.|.|++++.+++. +.|+.||++.. ...|++.++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCE
Confidence 34566667888998777654 35899999999999999999999999999974 99999999863 68999999999
Q ss_pred EEEEeCCeeeeEEeCCCC
Q 030351 136 FILFKDGKPSDRFVSQFN 153 (179)
Q Consensus 136 ~~~~~~G~~~~~~~G~~~ 153 (179)
+++|++|+.++++.|..+
T Consensus 156 lliyk~G~~v~~ivG~~~ 173 (192)
T cd02988 156 ILVYRNGDIVKQFIGLLE 173 (192)
T ss_pred EEEEECCEEEEEEeCchh
Confidence 999999999999998654
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=2.6e-17 Score=124.30 Aligned_cols=90 Identities=6% Similarity=0.097 Sum_probs=77.4
Q ss_pred cChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee
Q 030351 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 65 ~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
.+.+++++++....+.++++|||+||++|+.+.|.+++++++++. +.|+.||.| |+|.++|||++|++|++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEE
Confidence 356778888765446789999999999999999999999999985 999999987 99999999999999999
Q ss_pred eeEEeCCCCHHHHHHHHHH
Q 030351 145 SDRFVSQFNIVFFVFLENL 163 (179)
Q Consensus 145 ~~~~~G~~~~~~~~~i~~~ 163 (179)
++|+.|....+...++..+
T Consensus 75 i~r~~G~~~~~~~~~~~~~ 93 (204)
T PTZ00062 75 INSLEGCNTSTLVSFIRGW 93 (204)
T ss_pred EeeeeCCCHHHHHHHHHHH
Confidence 9999998765554466554
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.73 E-value=2.9e-17 Score=137.89 Aligned_cols=103 Identities=27% Similarity=0.561 Sum_probs=90.3
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
+.+++.++|++++. .+++++|+|||+||++|+.+.|.+.++++.+.+ ++.|+.||++++.+++++|+|.++||+++
T Consensus 3 v~~l~~~~~~~~i~-~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 3 VLVLTKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred ceECCHHHHHHHHh-cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 45678889998885 467999999999999999999999999988764 39999999999999999999999999999
Q ss_pred EeCCee-eeEEeCCCCHHHHH-HHHHHHH
Q 030351 139 FKDGKP-SDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 139 ~~~G~~-~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
|++|+. +.++.|..+.+.+. ++.+.+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 999988 78899999888876 6666553
No 55
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.73 E-value=2.8e-17 Score=137.34 Aligned_cols=100 Identities=19% Similarity=0.389 Sum_probs=83.8
Q ss_pred eeccccChhhHHHHHh--cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCC-eEEEEEeCCCch-HHH-HhcCCCCCc
Q 030351 60 VEAKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYP-QIA-DTYRIEALP 134 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~~~-~l~-~~~~v~~~P 134 (179)
..+.+++.++|++++. +.+++++|+|||+||++|+.+.|.|+++++++++. +.|+.||+|.+. .++ ++|+|.++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3667789999999984 56899999999999999999999999999999864 899999999763 444 789999999
Q ss_pred EEEEEeCCe-eeeEEe-CCCCHHHHHH
Q 030351 135 TFILFKDGK-PSDRFV-SQFNIVFFVF 159 (179)
Q Consensus 135 t~~~~~~G~-~~~~~~-G~~~~~~~~~ 159 (179)
|+++|++|. ....|. |.++.+.+..
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~ 457 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMS 457 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHH
Confidence 999998875 334566 5788888863
No 56
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=3e-17 Score=113.95 Aligned_cols=82 Identities=20% Similarity=0.451 Sum_probs=71.5
Q ss_pred ccChhhHHHHHhcC-CCcEEEEEec-------CCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-------chHHHHhc
Q 030351 64 KQTFSSLDDLLQKS-DKPVLVDFYA-------TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-------YPQIADTY 128 (179)
Q Consensus 64 ~~~~~~~~~~~~~~-~k~vvv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-------~~~l~~~~ 128 (179)
..+.++|.+.+... +++++|.||| +||++|+.+.|.+++++.++++++.|+.||+++ +.++..+|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 44677888888653 6899999999 999999999999999999998779999999976 45999999
Q ss_pred CCC-CCcEEEEEeCCeee
Q 030351 129 RIE-ALPTFILFKDGKPS 145 (179)
Q Consensus 129 ~v~-~~Pt~~~~~~G~~~ 145 (179)
+|. ++||+++|++|+.+
T Consensus 86 ~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CcccCCCEEEEEcCCcee
Confidence 998 99999999877543
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=5e-17 Score=135.76 Aligned_cols=104 Identities=22% Similarity=0.472 Sum_probs=86.8
Q ss_pred ceeccccChhhHHHHHh--cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC-CchHHHH-hcCCCCC
Q 030351 59 VVEAKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE-KYPQIAD-TYRIEAL 133 (179)
Q Consensus 59 ~~~~~~~~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d-~~~~l~~-~~~v~~~ 133 (179)
...+.+++.++|++++. +.+++++|+||++||++|+.+.|.|+++++++.+ ++.|+.+|++ .+.+++. +|+|.++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 34667789999999884 5689999999999999999999999999999975 4999999999 7788886 6999999
Q ss_pred cEEEEEeCCe-eeeEEeC-CCCHHHHH-HHHH
Q 030351 134 PTFILFKDGK-PSDRFVS-QFNIVFFV-FLEN 162 (179)
Q Consensus 134 Pt~~~~~~G~-~~~~~~G-~~~~~~~~-~i~~ 162 (179)
|||++|++|. ...+|.| .++.+.+. |+..
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 9999997765 3445664 68888876 5543
No 58
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.72 E-value=1.2e-16 Score=119.64 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=84.3
Q ss_pred cCCCceeccccCh--hhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch----------
Q 030351 55 RLLPVVEAKKQTF--SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---------- 122 (179)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---------- 122 (179)
...|.+.+.+++. +.+.......+|+++|+||++||++|+++.|.+.+++++ ++.++.|+.+++.
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~ 119 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKEL 119 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHc
Confidence 4456677666652 323222223589999999999999999999999998763 5888888875532
Q ss_pred -------------HHHHhcCCCCCcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHHHHHHHhc
Q 030351 123 -------------QIADTYRIEALPTFILF-KDGKPSDRFVSQFNIVFFV-FLENLICASLQ 169 (179)
Q Consensus 123 -------------~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~~i~~~~~ 169 (179)
.+...|+|.++|+.+++ ++|+++.++.|..+.+.+. .|+.++++..+
T Consensus 120 ~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~~ 181 (185)
T PRK15412 120 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYSK 181 (185)
T ss_pred CCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 23457899999976666 7999999999999999887 77777776654
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.72 E-value=5.7e-17 Score=137.06 Aligned_cols=106 Identities=25% Similarity=0.542 Sum_probs=91.7
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc---CCeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK---DKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
.+..++.++|++.+.+ ++.++|+||++||++|+.+.|.++++++.+. .++.++.||++++.+++++|+|.++||++
T Consensus 33 ~v~~l~~~~f~~~i~~-~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 33 HVTVLTDSTFDKFITE-NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CcEEcchhhHHHHHhc-CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4667788899988854 6799999999999999999999999988775 35999999999999999999999999999
Q ss_pred EEeCCeeeeEEeCCCCHHHHH-HHHHHHHHHh
Q 030351 138 LFKDGKPSDRFVSQFNIVFFV-FLENLICASL 168 (179)
Q Consensus 138 ~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~~~ 168 (179)
+|++|+.+ ++.|.++.+.+. ++.+.+....
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 99999877 899999988886 7776655433
No 60
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.71 E-value=1.5e-17 Score=115.74 Aligned_cols=92 Identities=17% Similarity=0.384 Sum_probs=68.2
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-HHHHhcCCCC--CcEEEEE-eCC
Q 030351 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYRIEA--LPTFILF-KDG 142 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~--~Pt~~~~-~~G 142 (179)
.++..+.....+++++|.|||+||++|+.+.|.+.+..........|+.|+++.+. ...+.|++.+ +||++|+ .+|
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCC
Confidence 33333444566899999999999999999999998877654434556667776654 4567899987 9999999 599
Q ss_pred eeeeEEe---CCCCHHHHH
Q 030351 143 KPSDRFV---SQFNIVFFV 158 (179)
Q Consensus 143 ~~~~~~~---G~~~~~~~~ 158 (179)
+++.++. |..+.+.+.
T Consensus 88 k~~~~~~~~~~~~~~~~f~ 106 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFY 106 (117)
T ss_pred CCchhhccCCCCccccccC
Confidence 9988554 445555544
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.71 E-value=1.5e-16 Score=103.33 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=66.5
Q ss_pred EEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 81 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
.+..||++||++|+.+.|.+++++++++..+.++.||.++++++.++|++.++||+++ +|+ .++.|..+.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHH
Confidence 4678999999999999999999999998779999999999999999999999999876 776 3788988888775
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=6.9e-17 Score=111.42 Aligned_cols=95 Identities=14% Similarity=0.257 Sum_probs=73.2
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEec--CCCh---hhccchHHHHHHHHHhcCCeEEEEEeCC-----CchHHHHhcCCC
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYA--TWCG---PCQYMAPILNEVGAALKDKIQVVKIDTE-----KYPQIADTYRIE 131 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a--~wC~---~C~~~~p~l~~~~~~~~~~v~~~~vd~d-----~~~~l~~~~~v~ 131 (179)
+..++.++|++.+. ..+.++|.||| +||+ +|+.+.|.+.+-+. .+.+..||++ ++.+|+++|+|+
T Consensus 3 ~v~L~~~nF~~~v~-~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVIP-KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHHh-cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 34678899999884 46789999999 7777 55554444443332 3889999994 578999999999
Q ss_pred --CCcEEEEEeCCe--eeeEEeCC-CCHHHHH-HHH
Q 030351 132 --ALPTFILFKDGK--PSDRFVSQ-FNIVFFV-FLE 161 (179)
Q Consensus 132 --~~Pt~~~~~~G~--~~~~~~G~-~~~~~~~-~i~ 161 (179)
++||+.+|++|. ....+.|. ++.+.|. ++.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHH
Confidence 999999999885 44678896 8988885 554
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.68 E-value=2.5e-16 Score=106.59 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=74.9
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCC--CCcEEEEEeC--CeeeeEEeCCCC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFILFKD--GKPSDRFVSQFN 153 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~--G~~~~~~~G~~~ 153 (179)
++++++.|+++||++|+.+.|.++++++++.+++.|+.||++++..+++.|+|. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999988999999999999999999999 9999999987 766665556557
Q ss_pred HHHHH-HHHH
Q 030351 154 IVFFV-FLEN 162 (179)
Q Consensus 154 ~~~~~-~i~~ 162 (179)
.+.+. ++.+
T Consensus 92 ~~~l~~fi~~ 101 (103)
T cd02982 92 AESLEEFVED 101 (103)
T ss_pred HHHHHHHHHh
Confidence 77775 5543
No 64
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.66 E-value=7.7e-16 Score=108.18 Aligned_cols=79 Identities=20% Similarity=0.466 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC-----------------------CCchHHHHhcCCCCC
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT-----------------------EKYPQIADTYRIEAL 133 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~v~~~ 133 (179)
++++++|+||++||++|+.+.|.++++.++++ +.++.|+. |.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 48899999999999999999999999998863 66776663 345577888999999
Q ss_pred cEEEEE-eCCeeeeEEeCCCCHHHH
Q 030351 134 PTFILF-KDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 134 Pt~~~~-~~G~~~~~~~G~~~~~~~ 157 (179)
|+.+++ ++|+++.++.|..+++.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 975555 899999999999987754
No 65
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.66 E-value=1.5e-15 Score=112.54 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=79.6
Q ss_pred cCCCceeccccChh--hHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC------------
Q 030351 55 RLLPVVEAKKQTFS--SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK------------ 120 (179)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~------------ 120 (179)
...|.+.+.+.+.+ .+.......+++++|+||++||++|+.+.|.+++++++ ++.++.|+.++
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~ 114 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKEL 114 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHc
Confidence 45677777766653 23211123589999999999999999999999998764 46677776532
Q ss_pred -----------chHHHHhcCCCCCcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHHHH
Q 030351 121 -----------YPQIADTYRIEALPTFILF-KDGKPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 121 -----------~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
+..+.+.|++.++|+++++ ++|+++.++.|..+.+++. .+++++
T Consensus 115 ~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 115 GNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 3355677899999975555 8999999999999988886 566655
No 66
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.66 E-value=1.4e-15 Score=128.76 Aligned_cols=102 Identities=20% Similarity=0.357 Sum_probs=83.1
Q ss_pred cCCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc-CCeEEEEEe----------------
Q 030351 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKID---------------- 117 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd---------------- 117 (179)
...|.+.+.+.+..+.. ..++|++||+|||+||++|+.+.|.|++++++++ +++.|+.|.
T Consensus 36 ~~lP~f~l~D~dG~~v~---lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 36 HTLSTLKTADNRPASVY---LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCCeEeecCCCceee---ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHH
Confidence 35677777777776443 2368999999999999999999999999999987 346666553
Q ss_pred ------------CCCchHHHHhcCCCCCcEEEEE-eCCeeeeEEeCCCCHHHHHH
Q 030351 118 ------------TEKYPQIADTYRIEALPTFILF-KDGKPSDRFVSQFNIVFFVF 159 (179)
Q Consensus 118 ------------~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~~ 159 (179)
.|.+..+.+.|+|.++||++++ ++|+++.++.|..+.+++..
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a 167 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALA 167 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHH
Confidence 3445678889999999998666 89999999999999998873
No 67
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.65 E-value=2.2e-15 Score=105.55 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=76.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHH-H--HHHHHHhcCCeEEEEEeCCCchHHHH--------hcCCCCCc
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTEKYPQIAD--------TYRIEALP 134 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~--------~~~v~~~P 134 (179)
+.+.+++. .+.+|+++|+|+++||++|+.|.+. + .++++.+.++++++.+|.++.+++.+ .|++.|+|
T Consensus 4 ~~eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 34455444 3568999999999999999999874 3 57888776679999999999887765 35899999
Q ss_pred EEEEE-eCCeeeeEEeCC-----CCHHHHHHHHHHHHHHh
Q 030351 135 TFILF-KDGKPSDRFVSQ-----FNIVFFVFLENLICASL 168 (179)
Q Consensus 135 t~~~~-~~G~~~~~~~G~-----~~~~~~~~i~~~i~~~~ 168 (179)
+++|+ .+|+++....+. .....+..+.+.|++.|
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELW 122 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHH
Confidence 99999 799999776555 23334554555555554
No 68
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.1e-16 Score=130.80 Aligned_cols=98 Identities=28% Similarity=0.599 Sum_probs=84.7
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
++.+..++|++++.+.+|-|+|.||||||+||+++.|+|+++++.+++ ++.+.++|...|. .....+.++|||.+|
T Consensus 368 VkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~ 445 (493)
T KOG0190|consen 368 VKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFF 445 (493)
T ss_pred eEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEe
Confidence 566778899999999999999999999999999999999999999996 5999999999875 456677789999999
Q ss_pred eCCe--eeeEEeCCCCHHHHH-HHH
Q 030351 140 KDGK--PSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 140 ~~G~--~~~~~~G~~~~~~~~-~i~ 161 (179)
+.|. ....+.|.++.+++. ++.
T Consensus 446 pag~k~~pv~y~g~R~le~~~~fi~ 470 (493)
T KOG0190|consen 446 PAGHKSNPVIYNGDRTLEDLKKFIK 470 (493)
T ss_pred cCCCCCCCcccCCCcchHHHHhhhc
Confidence 7665 456788999988886 554
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.64 E-value=6.2e-16 Score=106.24 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=65.3
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHH---HHHHhcCCeEEEEEeCCCc--------------------hHHHHhcCCCC
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNE---VGAALKDKIQVVKIDTEKY--------------------PQIADTYRIEA 132 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~---~~~~~~~~v~~~~vd~d~~--------------------~~l~~~~~v~~ 132 (179)
.++++++|+||++||++|+.+.+.+.+ +...+.+++.++.++++.. .++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 458999999999999999999999875 4455555688888888753 35888999999
Q ss_pred CcEEEEE-eCCeeeeEEeCCCCHHHHHH
Q 030351 133 LPTFILF-KDGKPSDRFVSQFNIVFFVF 159 (179)
Q Consensus 133 ~Pt~~~~-~~G~~~~~~~G~~~~~~~~~ 159 (179)
+||++++ ++|+++.++.|..+.+++..
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 9999999 59999999999999988863
No 70
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=1.5e-15 Score=127.55 Aligned_cols=102 Identities=28% Similarity=0.574 Sum_probs=86.6
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
.+..++..+|++.+...++.++|+||++||++|+.+.|.++++++++.+ ++.|+.+|++.+. +.. ++|.++||++
T Consensus 347 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred ccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 4566788999999888899999999999999999999999999999987 6999999999864 344 9999999999
Q ss_pred EEeCCeee--eEEeCCCCHHHHH-HHHHHH
Q 030351 138 LFKDGKPS--DRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 138 ~~~~G~~~--~~~~G~~~~~~~~-~i~~~i 164 (179)
+|++|+.. .++.|..+.+.+. ++.+..
T Consensus 425 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred EEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 99877653 6788988887775 555443
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=2.6e-15 Score=114.91 Aligned_cols=87 Identities=23% Similarity=0.435 Sum_probs=73.8
Q ss_pred CCcEEEEEec---CCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeee-EEeCCC
Q 030351 78 DKPVLVDFYA---TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD-RFVSQF 152 (179)
Q Consensus 78 ~k~vvv~F~a---~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~-~~~G~~ 152 (179)
+...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.|++++++++|+|.++||+++|++|+.+. ++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455667887 9999999999999999999964 2557777777999999999999999999999999984 999999
Q ss_pred CHHHHH-HHHHHH
Q 030351 153 NIVFFV-FLENLI 164 (179)
Q Consensus 153 ~~~~~~-~i~~~i 164 (179)
+.+.+. +|+.++
T Consensus 99 ~~~~l~~~i~~~~ 111 (215)
T TIGR02187 99 AGYEFAALIEDIV 111 (215)
T ss_pred CHHHHHHHHHHHH
Confidence 988876 666664
No 72
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.63 E-value=2.3e-15 Score=108.16 Aligned_cols=72 Identities=24% Similarity=0.441 Sum_probs=60.7
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--------CeEEEEEeCCCch-------------------------
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--------KIQVVKIDTEKYP------------------------- 122 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--------~v~~~~vd~d~~~------------------------- 122 (179)
.++|+++|+|||+||++|+.+.|.|.++++++.+ ++.++.|+.|++.
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3589999999999999999999999999886653 4889999887532
Q ss_pred HHHHhcCCCCCcEEEEE-eCCeeeeE
Q 030351 123 QIADTYRIEALPTFILF-KDGKPSDR 147 (179)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~-~~G~~~~~ 147 (179)
.+.++|++.++|+++++ .+|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 46678999999998888 79998875
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.61 E-value=4.9e-15 Score=107.48 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=63.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc------------hHHH-Hhc---CCCCCcEEEEE-e
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY------------PQIA-DTY---RIEALPTFILF-K 140 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~------------~~l~-~~~---~v~~~Pt~~~~-~ 140 (179)
++..+|+||++||++|+++.|.+++++++++ +.++.|+.|+. .... ..| ++.++||++++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5677999999999999999999999999984 56666666642 2333 345 88999998888 6
Q ss_pred CCee-eeEEeCCCCHHHHH-HHHH
Q 030351 141 DGKP-SDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 141 ~G~~-~~~~~G~~~~~~~~-~i~~ 162 (179)
+|+. ..+..|..+.+++. .|++
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHH
Confidence 7665 56789999988875 3443
No 74
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.61 E-value=1e-14 Score=112.56 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=81.4
Q ss_pred ccccCCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------c--
Q 030351 52 SKRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------Y-- 121 (179)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------~-- 121 (179)
......|.+.+++++.+.+. +-...||++||+||++||++|+...|.|.++++++++ ++.++.|++++ .
T Consensus 74 ~~g~~aPdF~l~d~~G~~vs-Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVA-LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred hcCCCCCceEEECCCCCEEe-HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence 45566788888877766442 2223589999999999999999999999999999985 48999998641 1
Q ss_pred --hHHH-HhcC----------------------------------CCCCcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHH
Q 030351 122 --PQIA-DTYR----------------------------------IEALPTFILF-KDGKPSDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 122 --~~l~-~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~ 162 (179)
.++. ++++ +.+.|+.+++ ++|+++.++.|..+.++++ .|++
T Consensus 153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 1222 2211 1235776666 8999999999999888775 4555
Q ss_pred HH
Q 030351 163 LI 164 (179)
Q Consensus 163 ~i 164 (179)
++
T Consensus 233 lL 234 (236)
T PLN02399 233 LL 234 (236)
T ss_pred Hh
Confidence 54
No 75
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.60 E-value=1.8e-14 Score=106.17 Aligned_cols=107 Identities=24% Similarity=0.463 Sum_probs=86.0
Q ss_pred cccCCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCC-eEEEEEeCCC-----------
Q 030351 53 KRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEK----------- 120 (179)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~----------- 120 (179)
.....+.+.+...+.+.+. +-...+++++|+||++||++|+...+.+.++++++++. +.++.++.|+
T Consensus 37 ~g~~~p~~~~~~~~g~~~~-l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIE-LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CCCCCCCcEeecCCCCEEe-HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence 4445566777777776553 22335789999999999999999999999999999854 8888888753
Q ss_pred -----------chHHHHhcCCCCCcEEEEE-eCCeeeeEEeCCCCHHHHHHH
Q 030351 121 -----------YPQIADTYRIEALPTFILF-KDGKPSDRFVSQFNIVFFVFL 160 (179)
Q Consensus 121 -----------~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~~i 160 (179)
+.++.+.|++.++|+++++ ++|+++..+.|..+.+++..+
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~ 167 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEY 167 (173)
T ss_pred hCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 4577899999999998777 799999899999998888633
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.60 E-value=7.8e-15 Score=126.59 Aligned_cols=92 Identities=27% Similarity=0.542 Sum_probs=77.1
Q ss_pred ChhhHHHHHh---cCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCc----hHHHHhcCCCCCcE
Q 030351 66 TFSSLDDLLQ---KSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPT 135 (179)
Q Consensus 66 ~~~~~~~~~~---~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt 135 (179)
+.+++++.+. .++|+++|+||++||++|+.+++.. +++.++++ ++.++++|++++ .++.++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 5567776664 3479999999999999999999875 77888886 488999999753 68899999999999
Q ss_pred EEEE-eCCeee--eEEeCCCCHHHHH
Q 030351 136 FILF-KDGKPS--DRFVSQFNIVFFV 158 (179)
Q Consensus 136 ~~~~-~~G~~~--~~~~G~~~~~~~~ 158 (179)
+++| ++|+++ .++.|..+.+++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~ 563 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFA 563 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHH
Confidence 9999 589884 6889999988875
No 77
>PHA02125 thioredoxin-like protein
Probab=99.60 E-value=7.8e-15 Score=94.11 Aligned_cols=62 Identities=29% Similarity=0.585 Sum_probs=55.5
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCC
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQF 152 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~ 152 (179)
+++||++||++|+.+.|.|+++. +.++.||.+++.+++++|+|.++||++ +|+.++++.|..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~ 63 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVP 63 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCC
Confidence 78999999999999999997652 468899999999999999999999987 788889999973
No 78
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.59 E-value=9.6e-15 Score=97.47 Aligned_cols=67 Identities=36% Similarity=0.748 Sum_probs=56.5
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhc--CCeEEEEEeCCCch-------------------------HHHHhcCC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEKYP-------------------------QIADTYRI 130 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~-------------------------~l~~~~~v 130 (179)
||+++|+||++||++|+.+.|.+.+++++++ +++.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999887642 67778999
Q ss_pred CCCcEEEEE-eCCee
Q 030351 131 EALPTFILF-KDGKP 144 (179)
Q Consensus 131 ~~~Pt~~~~-~~G~~ 144 (179)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999998888 77764
No 79
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.59 E-value=2.3e-14 Score=109.67 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
+...++.||++||++|+.+.+.+++++.+.+ .+.++.+|.+++++++++|+|.++||++++++|+. +.|..+.+++
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 3344555999999999999999999999865 59899999999999999999999999999988864 8899888877
Q ss_pred H-HHH
Q 030351 158 V-FLE 161 (179)
Q Consensus 158 ~-~i~ 161 (179)
. +++
T Consensus 209 ~~~l~ 213 (215)
T TIGR02187 209 LEYIL 213 (215)
T ss_pred HHHHH
Confidence 5 443
No 80
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.59 E-value=3.2e-15 Score=116.70 Aligned_cols=86 Identities=35% Similarity=0.668 Sum_probs=76.3
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNI 154 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 154 (179)
+..|+|.||||||++|+++.|+|.++-.++++ .+.+.++|+...+.++.+|+|+|+||+.+|++|-.++ +.|.+..
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R~K 121 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGREK 121 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCccH
Confidence 67999999999999999999999999988875 3889999999999999999999999999999987766 6788888
Q ss_pred HHHHHHHHHH
Q 030351 155 VFFVFLENLI 164 (179)
Q Consensus 155 ~~~~~i~~~i 164 (179)
+.+..+.+..
T Consensus 122 d~iieFAhR~ 131 (468)
T KOG4277|consen 122 DAIIEFAHRC 131 (468)
T ss_pred HHHHHHHHhc
Confidence 8887555543
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.58 E-value=5.1e-15 Score=115.47 Aligned_cols=100 Identities=32% Similarity=0.622 Sum_probs=84.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc-----CCeEEEEEeCCCchHHHHhcCCCCCcEEEEEe
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK-----DKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-----~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 140 (179)
+.+|++.++.. ...++|.|||+||+..+.++|++++.+++++ +++++..||||.+..++.+|.|..+||+-+|+
T Consensus 2 t~~N~~~il~s-~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSILDS-NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhhcc-ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 45677777765 7799999999999999999999977666554 36999999999999999999999999999999
Q ss_pred CCeeee-EEeCCCCHHHHH-HHHHHHHH
Q 030351 141 DGKPSD-RFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 141 ~G~~~~-~~~G~~~~~~~~-~i~~~i~~ 166 (179)
||.... +|.|.+..+.+. +|++.+..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 999887 688999888876 66655443
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.57 E-value=3.8e-14 Score=111.89 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-----------chHHHHhcCCCCCcEEEEEeC-Cee
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-----------YPQIADTYRIEALPTFILFKD-GKP 144 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~~~-G~~ 144 (179)
.+++++|+||++||++|+.+.|.|++++++++ +.++.|++|. +..+.++|+|.++|++++++. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 48999999999999999999999999999985 6677777665 357889999999999999954 555
Q ss_pred ee-EEeCCCCHHHHH-HHHHH
Q 030351 145 SD-RFVSQFNIVFFV-FLENL 163 (179)
Q Consensus 145 ~~-~~~G~~~~~~~~-~i~~~ 163 (179)
+. ...|..+.+++. .|...
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 54 456989988886 44433
No 83
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.56 E-value=9.1e-14 Score=97.72 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=85.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEec--CCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYA--TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a--~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 142 (179)
+..+++.++...+ ..+|+|-. .-++.+.+..-+|++++++|++ ++.|+.||+|++++++.+|||.++||+++|++|
T Consensus 23 ~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 23 SESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred ccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 3456667775444 45555544 2589999999999999999984 599999999999999999999999999999999
Q ss_pred eeeeEEeCCCCHHHHH-HHHHHHHHHhc
Q 030351 143 KPSDRFVSQFNIVFFV-FLENLICASLQ 169 (179)
Q Consensus 143 ~~~~~~~G~~~~~~~~-~i~~~i~~~~~ 169 (179)
+.++++.|..+++.+. +|.+++..-.+
T Consensus 102 k~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 102 NYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 9999999999998887 78877765444
No 84
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.56 E-value=2e-14 Score=101.89 Aligned_cols=71 Identities=27% Similarity=0.618 Sum_probs=59.7
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCch-------------------------HHHHhc
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYP-------------------------QIADTY 128 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~-------------------------~l~~~~ 128 (179)
+||+++|+||++||++|+.+.|.++++++++++ ++.++.|+.|+.. .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 489999999999999999999999999998875 4778888777532 455679
Q ss_pred CCCCCcEEEEE-eCCeeeeE
Q 030351 129 RIEALPTFILF-KDGKPSDR 147 (179)
Q Consensus 129 ~v~~~Pt~~~~-~~G~~~~~ 147 (179)
+|.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999999888 68887765
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.56 E-value=2.7e-14 Score=100.90 Aligned_cols=71 Identities=32% Similarity=0.645 Sum_probs=60.1
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCc------------------------hHHHHhcC
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKY------------------------PQIADTYR 129 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 129 (179)
.+|+++|+||++||++|+.+.|.+.++++++.+ ++.++.|+.|.+ ..+.++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 488999999999999999999999999888763 477777777644 35677899
Q ss_pred CCCCcEEEEE-eCCeeeeE
Q 030351 130 IEALPTFILF-KDGKPSDR 147 (179)
Q Consensus 130 v~~~Pt~~~~-~~G~~~~~ 147 (179)
|.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 69987765
No 86
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.55 E-value=5.4e-14 Score=104.55 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEE------EEEeCCCc---------------
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQV------VKIDTEKY--------------- 121 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~------~~vd~d~~--------------- 121 (179)
.+.+...+.... ..||+.+|+|||.||++|+...|.++++.++ ++.+ +.||.|+.
T Consensus 45 ~~~~y~~~~~~~-l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 45 KDTVYQPWGSAE-LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred CcccceeccHHH-cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 344445453333 3499999999999999999999999999664 3556 77777652
Q ss_pred --------------hHHHHhcCCCCCcEE-EEE-eCCeeeeEEeCCCCHHHHHHHHHHHHHHh
Q 030351 122 --------------PQIADTYRIEALPTF-ILF-KDGKPSDRFVSQFNIVFFVFLENLICASL 168 (179)
Q Consensus 122 --------------~~l~~~~~v~~~Pt~-~~~-~~G~~~~~~~G~~~~~~~~~i~~~i~~~~ 168 (179)
..+..+|++.++|+. +++ ++|+++.++.|..+.++++.+...|++.+
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGLL 183 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 134567899999765 455 99999999999999998887777777654
No 87
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.1e-14 Score=117.73 Aligned_cols=102 Identities=32% Similarity=0.641 Sum_probs=86.9
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeee
Q 030351 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
..+|.......+++++|.||++||++|+.+.|.+.++++.+.+.+.+..||++++.++|++|+|+++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 44555566667889999999999999999999999999999988999999999999999999999999999998885566
Q ss_pred EEeCCCCHHHHH-HHHHHHHHHh
Q 030351 147 RFVSQFNIVFFV-FLENLICASL 168 (179)
Q Consensus 147 ~~~G~~~~~~~~-~i~~~i~~~~ 168 (179)
.+.|..+.+.+. +..+.++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred eccCcccHHHHHHHHHHhhcccc
Confidence 677888887776 6665555443
No 88
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.54 E-value=4.4e-14 Score=90.85 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=57.1
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCC-CHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQF-NIVFFV 158 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~~~~ 158 (179)
.|.||++||++|+.+.|.+++++++++..+.++.+| + .+.+.+|++.++||+++ ||+.+ +.|.. ..+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHH
Confidence 378999999999999999999999998778887777 2 34478899999999988 88877 66754 335443
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.54 E-value=6.4e-14 Score=128.09 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCC-eEEEEEeC---C------------------------CchHHHHhc
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDT---E------------------------KYPQIADTY 128 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~---d------------------------~~~~l~~~~ 128 (179)
++|+++|+|||+||++|+.+.|.|++++++++++ +.++.|.. | .+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999864 88887742 2 234577889
Q ss_pred CCCCCcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHHHH
Q 030351 129 RIEALPTFILF-KDGKPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 129 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
+|.++|+++++ ++|+++.++.|....+.+. .++..+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99999999999 7999999999998887776 455444
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.53 E-value=9e-14 Score=96.92 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=70.7
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC---------------------
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--------------------- 118 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~--------------------- 118 (179)
+.+.+++.+.+.... ..+++++|+||++||++|+.+.|.+.++++++. +..+.+|-
T Consensus 3 f~l~~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 3 FTATTLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred ceeecCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 344444544444333 346899999999999999999999999988742 32222221
Q ss_pred CCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 119 EKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 119 d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
|.+.+++++|+|.++|+++++++|+++.++.|..+.+.+.
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~ 119 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLR 119 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHH
Confidence 3456799999999999999995444888999999988874
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.53 E-value=8.4e-14 Score=105.37 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=78.5
Q ss_pred cCCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------c----h
Q 030351 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------Y----P 122 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------~----~ 122 (179)
...+.+.+.+++.+.+. +-..+||+++|+|||+||++|+...|.|.++++++++ ++.++.|++++ + .
T Consensus 17 ~~~pdf~l~d~~G~~vs-L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~ 95 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVP-MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIR 95 (199)
T ss_pred CCCCceEEECCCCCEEe-HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHH
Confidence 45666666666655332 2223589999999999999999999999999999985 49999998631 1 2
Q ss_pred HHHHhcCC--------------------------------C----CCc----EEEEEeCCeeeeEEeCCCCHHHHH-HHH
Q 030351 123 QIADTYRI--------------------------------E----ALP----TFILFKDGKPSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 123 ~l~~~~~v--------------------------------~----~~P----t~~~~~~G~~~~~~~G~~~~~~~~-~i~ 161 (179)
.+.+++++ . ++| |+++.++|+++.++.|..+.+.+. .|+
T Consensus 96 ~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~ 175 (199)
T PTZ00056 96 KFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIA 175 (199)
T ss_pred HHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHH
Confidence 33333332 1 223 455559999999999988887776 666
Q ss_pred HHHHH
Q 030351 162 NLICA 166 (179)
Q Consensus 162 ~~i~~ 166 (179)
+++.+
T Consensus 176 ~ll~~ 180 (199)
T PTZ00056 176 ELLGV 180 (199)
T ss_pred HHHHH
Confidence 66643
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.52 E-value=2.6e-13 Score=100.42 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=67.5
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-------------hHHHHhcCC--CCCcEEEEE-eCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-------------PQIADTYRI--EALPTFILF-KDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-------------~~l~~~~~v--~~~Pt~~~~-~~G~~~ 145 (179)
+|+||++||++|+++.|.+++++++++ +.++.|+.|+. ..+...|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999984 77777776633 236678885 699997777 899986
Q ss_pred -eEEeCCCCHHHHH-HHHHHHHH
Q 030351 146 -DRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 146 -~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
..+.|..+++++. .++.++..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 5799999999886 56666655
No 93
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.52 E-value=2.6e-13 Score=93.76 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=78.6
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhccchHH-H--HHHHHHhcCCeEEEEEeCC--CchHHHHhcCCCCCcEEEEE-e-
Q 030351 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTE--KYPQIADTYRIEALPTFILF-K- 140 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~-~- 140 (179)
++..+...+++|+++|+|+++||++|+.+... | +++.+.+.+++.++.+|++ +...+...|++.++|+++++ .
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 33334444568999999999999999999874 4 7788877777888888887 45688999999999999988 5
Q ss_pred CCeeeeEEeCCCCHHHHH-HHHHHH
Q 030351 141 DGKPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 141 ~G~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
+|+++.++.|..+.+++. .+.+.+
T Consensus 87 ~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 87 TGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 799999999999988885 444443
No 94
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.51 E-value=6.7e-14 Score=96.31 Aligned_cols=71 Identities=21% Similarity=0.469 Sum_probs=55.4
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC--------------------chHHHHhcCCCCCcEE
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--------------------YPQIADTYRIEALPTF 136 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--------------------~~~l~~~~~v~~~Pt~ 136 (179)
.+++++|+||++||++|+.+.|.++++++++++++.++.+.-+. +.++.++|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 37899999999999999999999999999887667666662111 1255667888899997
Q ss_pred EEE-eCCeeeeE
Q 030351 137 ILF-KDGKPSDR 147 (179)
Q Consensus 137 ~~~-~~G~~~~~ 147 (179)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 777 68877654
No 95
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.51 E-value=8.4e-14 Score=100.01 Aligned_cols=78 Identities=36% Similarity=0.651 Sum_probs=66.9
Q ss_pred cCCCcEEEEEecC-CChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc---------------------hHHHHhcCCC-
Q 030351 76 KSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY---------------------PQIADTYRIE- 131 (179)
Q Consensus 76 ~~~k~vvv~F~a~-wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~v~- 131 (179)
..+|+++|+||++ ||++|+...|.+.++++++++ ++.++.|..+.+ ..+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4589999999999 999999999999999998775 488888876543 3677889998
Q ss_pred --------CCcEEEEE-eCCeeeeEEeCCCC
Q 030351 132 --------ALPTFILF-KDGKPSDRFVSQFN 153 (179)
Q Consensus 132 --------~~Pt~~~~-~~G~~~~~~~G~~~ 153 (179)
++|+++++ ++|+++.+..|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99997666 99999999999887
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.50 E-value=1.4e-13 Score=93.52 Aligned_cols=74 Identities=35% Similarity=0.726 Sum_probs=66.5
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhc-CCeEEEEEeCCCc-----------------------hHHHHhcCCCC
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKY-----------------------PQIADTYRIEA 132 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~v~~ 132 (179)
.+++++|+||++||++|+...+.+.++..+++ .++.++.|+.|.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 37899999999999999999999999999986 3599999999885 78899999999
Q ss_pred CcEEEEE-eCCeeeeEEeC
Q 030351 133 LPTFILF-KDGKPSDRFVS 150 (179)
Q Consensus 133 ~Pt~~~~-~~G~~~~~~~G 150 (179)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9998888 69999888776
No 97
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.3e-14 Score=117.83 Aligned_cols=85 Identities=22% Similarity=0.517 Sum_probs=74.4
Q ss_pred CCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCC--CchHHHHhcCC
Q 030351 56 LLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTE--KYPQIADTYRI 130 (179)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d--~~~~l~~~~~v 130 (179)
..+...+..++.++|+..+....+..+|.||++||++|+.+.|+++++++++.+ -|.++.|||- +|..+|++|+|
T Consensus 35 y~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 35 YSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred cCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 344467778889999999987778899999999999999999999999999875 3888889985 57899999999
Q ss_pred CCCcEEEEEe
Q 030351 131 EALPTFILFK 140 (179)
Q Consensus 131 ~~~Pt~~~~~ 140 (179)
.++|++.+|.
T Consensus 115 ~~~Ptlryf~ 124 (606)
T KOG1731|consen 115 SGYPTLRYFP 124 (606)
T ss_pred CCCceeeecC
Confidence 9999999994
No 98
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.48 E-value=2.6e-13 Score=84.85 Aligned_cols=61 Identities=25% Similarity=0.488 Sum_probs=53.8
Q ss_pred EEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee
Q 030351 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 81 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
-++.|+++||++|+.+.+.+++++++.+ ++.+..+|+++++++.++|++.++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 4678999999999999999999988764 59999999999999999999999999865 4543
No 99
>PLN02412 probable glutathione peroxidase
Probab=99.48 E-value=4.9e-13 Score=98.52 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=81.2
Q ss_pred cCCCceeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC--------CchHH-
Q 030351 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE--------KYPQI- 124 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d--------~~~~l- 124 (179)
...|.+.+.+.+.+.+. +-...+|+++|+||++||+.|+...|.|.++++++++ ++.++.|+++ ...++
T Consensus 7 ~~~pdf~l~d~~G~~v~-l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVS-LNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEe-HHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 45666777666665432 2223589999999999999999999999999999995 4999999864 21111
Q ss_pred ---HHhc---------------------C-------------CCCCcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 125 ---ADTY---------------------R-------------IEALPTFILF-KDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 125 ---~~~~---------------------~-------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
.+++ + |.+.|+.+++ ++|+++.++.|..+.+++. .|+.++.
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 1211 1 3445886666 8999999999999988886 6777766
Q ss_pred H
Q 030351 166 A 166 (179)
Q Consensus 166 ~ 166 (179)
+
T Consensus 166 ~ 166 (167)
T PLN02412 166 Q 166 (167)
T ss_pred h
Confidence 5
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.47 E-value=4.1e-13 Score=94.30 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=63.5
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC---------------------------CchHHHHhc
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE---------------------------KYPQIADTY 128 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~ 128 (179)
++++++|+||++||++|+...|.|+++++++++ ++.++.|+.+ .+..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 478999999999999999999999999999985 5888888642 123566779
Q ss_pred CCCCCcEEEEE-eCCeeeeEEeCC
Q 030351 129 RIEALPTFILF-KDGKPSDRFVSQ 151 (179)
Q Consensus 129 ~v~~~Pt~~~~-~~G~~~~~~~G~ 151 (179)
++.++|+++++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999998888 799999988875
No 101
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.46 E-value=9.2e-13 Score=87.18 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
+..-+..|+++||++|....+.+++++++++ ++.+..+|.++.+++.++|+|.++|++++ ||+.+.+ |..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 4556888999999999999999999999887 49999999999999999999999999965 7887664 76554443
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.44 E-value=8.2e-13 Score=99.22 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=71.6
Q ss_pred cccCCCceeccccChhhHHHH-HhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC-------------
Q 030351 53 KRRLLPVVEAKKQTFSSLDDL-LQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT------------- 118 (179)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~------------- 118 (179)
.+...|.+.+++.+.+.+.-. ....+|+++|+||++||++|+++.|.+.++.++++.++.++..|.
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHEL 127 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCC
Confidence 344567788887777654321 123578999999999999999999999999887643344443210
Q ss_pred -----CCchHHHHhcCCCCCcEEEEE-eCCeeeeEEeCC-CCHHHHH
Q 030351 119 -----EKYPQIADTYRIEALPTFILF-KDGKPSDRFVSQ-FNIVFFV 158 (179)
Q Consensus 119 -----d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~~~~ 158 (179)
....++.+.|++.++|+.+++ ++|+++.+ |. ...+.+.
T Consensus 128 ~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le 172 (189)
T TIGR02661 128 GGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLE 172 (189)
T ss_pred CcceeechhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHH
Confidence 013467788999999997666 79988765 43 3444554
No 103
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.42 E-value=6.4e-13 Score=93.36 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=62.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE-eC
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KD 141 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~ 141 (179)
+.++-.+...+.+|+++|+|+++||++|+.|...+ .++.+...+++..+.++.|....-....+ .++||++|+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 34444444556799999999999999999999965 56677665567666777653211111233 689999999 79
Q ss_pred CeeeeEEeCCCC
Q 030351 142 GKPSDRFVSQFN 153 (179)
Q Consensus 142 G~~~~~~~G~~~ 153 (179)
|+++.++.|...
T Consensus 90 g~vi~~i~Gy~~ 101 (130)
T cd02960 90 LTVRADITGRYS 101 (130)
T ss_pred CCCccccccccc
Confidence 999988888754
No 104
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.9e-12 Score=88.69 Aligned_cols=98 Identities=18% Similarity=0.330 Sum_probs=85.2
Q ss_pred HhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCC----------------chHHHHhcCCCCCc
Q 030351 74 LQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEK----------------YPQIADTYRIEALP 134 (179)
Q Consensus 74 ~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~----------------~~~l~~~~~v~~~P 134 (179)
+..++|..++.|..+.|++|..+...+ +++.+.+.+++.++.+++.. .++|++.|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 334589999999999999999999977 77888888889999998742 24899999999999
Q ss_pred EEEEE-eCCeeeeEEeCCCCHHHHHHHHHHHHHHhccc
Q 030351 135 TFILF-KDGKPSDRFVSQFNIVFFVFLENLICASLQNH 171 (179)
Q Consensus 135 t~~~~-~~G~~~~~~~G~~~~~~~~~i~~~i~~~~~~~ 171 (179)
||+|| ++|+.+..+.|.++.+++..+.+++.+..-.+
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd 155 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKD 155 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999 89999999999999999999999988765543
No 105
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.1e-12 Score=106.88 Aligned_cols=106 Identities=28% Similarity=0.486 Sum_probs=92.1
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc--CCeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
.+.+++.++|+..+...+..++|.||+|||++|+.+.|.+++++..+. +.+.+..+|++.+..++.+++|.++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 355667778888888888999999999999999999999999999886 469999999998999999999999999999
Q ss_pred EeCCee-eeEEeCCCCHHHHH-HHHHHHHH
Q 030351 139 FKDGKP-SDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 139 ~~~G~~-~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
|++|.. ...+.|.++.+.+. ++++....
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 988887 77788888888887 66666554
No 106
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.35 E-value=4.4e-12 Score=91.93 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=61.6
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC--------c---hHHHHh-cC--------------
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------Y---PQIADT-YR-------------- 129 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~--------~---~~l~~~-~~-------------- 129 (179)
.||+++|+||++||+ |+...|.|+++++++++ ++.++.|+++. . .++.++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 489999999999999 99999999999999974 58899987642 1 123322 21
Q ss_pred ---------CCCCc-----------EEEEE-eCCeeeeEEeCCCCHHHHH
Q 030351 130 ---------IEALP-----------TFILF-KDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 130 ---------v~~~P-----------t~~~~-~~G~~~~~~~G~~~~~~~~ 158 (179)
+.++| |.+++ ++|+++.++.|..+.+++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~ 149 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELE 149 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHH
Confidence 23466 44444 9999999999999887663
No 107
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.33 E-value=1.8e-11 Score=88.81 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=65.0
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeC--------CCc---hHHHHh-c---------------
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDT--------EKY---PQIADT-Y--------------- 128 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~--------d~~---~~l~~~-~--------------- 128 (179)
.||+++|+||++||++|+...|.+.++++++++ ++.++.|++ +.. .++.++ +
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 488999999999999999999999999999985 589999985 211 122221 1
Q ss_pred --------CC---CCCc-----EEEEEeCCeeeeEEeCCCCHHHHH-HHHH
Q 030351 129 --------RI---EALP-----TFILFKDGKPSDRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 129 --------~v---~~~P-----t~~~~~~G~~~~~~~G~~~~~~~~-~i~~ 162 (179)
.+ .++| ++++.++|+++.++.|..+.+.+. .|+.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 11 2478 465569999999999999888775 4444
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.32 E-value=2.6e-11 Score=89.48 Aligned_cols=71 Identities=27% Similarity=0.458 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhc-CCeEEEEEeCCC-----------------------------chHHHH
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEK-----------------------------YPQIAD 126 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~-----------------------------~~~l~~ 126 (179)
.++++||+||++||+.|....+.+.+++++++ .++.|+.|+.|. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999998 468899987753 125566
Q ss_pred hcCCCCCcEEEEE-eCCeeeeE
Q 030351 127 TYRIEALPTFILF-KDGKPSDR 147 (179)
Q Consensus 127 ~~~v~~~Pt~~~~-~~G~~~~~ 147 (179)
.|++..+|+++++ ++|+++.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe
Confidence 7899999998888 68987754
No 109
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.32 E-value=9.8e-12 Score=105.13 Aligned_cols=89 Identities=26% Similarity=0.559 Sum_probs=74.4
Q ss_pred hHHHHHhcC-CCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCc----hHHHHhcCCCCCcEEEEE-
Q 030351 69 SLDDLLQKS-DKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILF- 139 (179)
Q Consensus 69 ~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~- 139 (179)
++++.+.++ +|+|+|+|||+||..||.+++.. .++..+.++ ++..++|..++ .++.++|++-++|++++|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 677777554 56999999999999999999966 455555554 99999998765 588899999999999999
Q ss_pred eCCeeeeEEeCCCCHHHHH
Q 030351 140 KDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 140 ~~G~~~~~~~G~~~~~~~~ 158 (179)
.+|++....+|.++++.+.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~ 561 (569)
T COG4232 543 PQGSEPEILTGFLTADAFL 561 (569)
T ss_pred CCCCcCcCCcceecHHHHH
Confidence 5998888899999998884
No 110
>smart00594 UAS UAS domain.
Probab=99.32 E-value=2.8e-11 Score=84.66 Aligned_cols=93 Identities=5% Similarity=0.126 Sum_probs=74.0
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCC--chHHHHhcCCCCCcEEEEE-
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEK--YPQIADTYRIEALPTFILF- 139 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~- 139 (179)
+.++..+...+.+|+++|+|+++||++|+.+.... .++.+.+.+++.+..+|++. ..+++..|++.++|+++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 44444455556689999999999999999998864 67777777678888888764 4678999999999999888
Q ss_pred eCC-----eeeeEEeCCCCHHHHH
Q 030351 140 KDG-----KPSDRFVSQFNIVFFV 158 (179)
Q Consensus 140 ~~G-----~~~~~~~G~~~~~~~~ 158 (179)
.+| +.+.++.|..+.+++.
T Consensus 95 ~~~g~~~~~~~~~~~G~~~~~~l~ 118 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEISPEELM 118 (122)
T ss_pred cCCCceeEEEeccccCCCCHHHHH
Confidence 565 3567889999988875
No 111
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.28 E-value=1.1e-11 Score=80.61 Aligned_cols=70 Identities=34% Similarity=0.603 Sum_probs=54.0
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEe
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 140 (179)
-.+...+++|+++|+|+++||++|+.+...+ .++.+.+.+++.++.+|.++..... .+...++|+++|+.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeC
Confidence 3344445699999999999999999999987 6676656667999999998766544 32227799998874
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.28 E-value=3.8e-11 Score=85.37 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC---------------------chHHHHhcCCCCC
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------YPQIADTYRIEAL 133 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~v~~~ 133 (179)
.+++++|+|| +.||+.|....+.+.++++++.+ ++.++.|..|. +..+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3889999999 58999999999999999998874 58888887653 3466778899988
Q ss_pred ---------cEEEEE-eCCeeeeEEeCCCCHHHHH
Q 030351 134 ---------PTFILF-KDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 134 ---------Pt~~~~-~~G~~~~~~~G~~~~~~~~ 158 (179)
|+++++ ++|+++..+.|....+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 887777 6899999999999877774
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.26 E-value=3.3e-11 Score=90.04 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=74.7
Q ss_pred cCCCceeccccChhhHHHHHhcCCCcE-EEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------c-h--
Q 030351 55 RLLPVVEAKKQTFSSLDDLLQKSDKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------Y-P-- 122 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~k~v-vv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------~-~-- 122 (179)
...+.+.+.+.+.+.+. +-...||++ ++.+||+||++|+..+|.|+++++++++ ++.++.|+++. . .
T Consensus 18 ~~~p~f~l~d~~G~~vs-Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 18 KSFFEFEAIDIDGQLVQ-LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred CcccceEeEcCCCCEEe-HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHH
Confidence 44566777666665432 222347765 4566999999999999999999999985 48899997631 0 1
Q ss_pred -HH-HHh------------------------------------cCCCCCcE----EEEEeCCeeeeEEeCCCCHHHHH-H
Q 030351 123 -QI-ADT------------------------------------YRIEALPT----FILFKDGKPSDRFVSQFNIVFFV-F 159 (179)
Q Consensus 123 -~l-~~~------------------------------------~~v~~~Pt----~~~~~~G~~~~~~~G~~~~~~~~-~ 159 (179)
.+ .++ +++.++|+ +++.++|+++.++.|..+.+.+. .
T Consensus 97 ~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~ 176 (183)
T PTZ00256 97 KEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQD 176 (183)
T ss_pred HHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHH
Confidence 11 111 13457794 65669999999999998887765 4
Q ss_pred HHHHH
Q 030351 160 LENLI 164 (179)
Q Consensus 160 i~~~i 164 (179)
|++++
T Consensus 177 I~~ll 181 (183)
T PTZ00256 177 IEKLL 181 (183)
T ss_pred HHHHh
Confidence 55444
No 114
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.26 E-value=2.5e-11 Score=87.15 Aligned_cols=70 Identities=29% Similarity=0.680 Sum_probs=60.3
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------hHHHHhc
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKY-------------------------PQIADTY 128 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~-------------------------~~l~~~~ 128 (179)
.||.+.++|.|.||++||.+-|.+.+++++..++ +.++-|+.|.+ .++..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4899999999999999999999999999999876 77777777643 2777899
Q ss_pred CCCCCcEEEEE-eCCeeee
Q 030351 129 RIEALPTFILF-KDGKPSD 146 (179)
Q Consensus 129 ~v~~~Pt~~~~-~~G~~~~ 146 (179)
+|.++|++++. .+|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999998888 7887764
No 115
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.25 E-value=1e-10 Score=84.81 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=78.4
Q ss_pred cCCCceeccccChhhHHHHHhcCCCcEEEEEecC-CChhhccchHHHHHHHHHhcC-CeEEEEEeCCC------------
Q 030351 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK------------ 120 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------------ 120 (179)
...|.+.+.+.+.+.+. +-..++|+++|+||+. ||+.|+...+.+.++++++++ ++.++.|+.|.
T Consensus 8 ~~~p~f~l~~~~G~~~~-l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVS-LTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CcCCCcEeeCCCCCEEe-HHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 34455666655554332 2223578999999986 688999999999999999874 58888887764
Q ss_pred ---------chHHHHhcCCCCC------------cEEEEE-eCCeeeeEEeCCCCHHHHHHHHHHH
Q 030351 121 ---------YPQIADTYRIEAL------------PTFILF-KDGKPSDRFVSQFNIVFFVFLENLI 164 (179)
Q Consensus 121 ---------~~~l~~~~~v~~~------------Pt~~~~-~~G~~~~~~~G~~~~~~~~~i~~~i 164 (179)
...+.+.|++... |+.+++ ++|+++..+.|....+.+..+.+.+
T Consensus 87 ~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~~ 152 (154)
T PRK09437 87 LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDYL 152 (154)
T ss_pred CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHHH
Confidence 2356677887654 565555 7999999999988777765555444
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.24 E-value=4.9e-11 Score=80.49 Aligned_cols=81 Identities=38% Similarity=0.835 Sum_probs=70.1
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC-CchHHHHhcC--CCCCcEEEEEeCCeeeeEEeC--CC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-KYPQIADTYR--IEALPTFILFKDGKPSDRFVS--QF 152 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d-~~~~l~~~~~--v~~~Pt~~~~~~G~~~~~~~G--~~ 152 (179)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. .++.+...|+ +..+|+++++.+|+.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999867899999997 7899999999 999999998888887766666 45
Q ss_pred CHHHHH
Q 030351 153 NIVFFV 158 (179)
Q Consensus 153 ~~~~~~ 158 (179)
+...+.
T Consensus 112 ~~~~~~ 117 (127)
T COG0526 112 PKEALI 117 (127)
T ss_pred CHHHHH
Confidence 555443
No 117
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.23 E-value=9.7e-11 Score=86.28 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=76.7
Q ss_pred ccCCCceeccccChhhHHHHHhcCCCcEEEEEecCC-ChhhccchHHHHHHHHHhcCCeEEEEEeCCC------------
Q 030351 54 RRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATW-CGPCQYMAPILNEVGAALKDKIQVVKIDTEK------------ 120 (179)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~w-C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~------------ 120 (179)
+...|.+.+.+.+.+.+. +....||+++|+||+.| |++|+...|.|.++++++. ++.++.|+.|.
T Consensus 21 G~~~P~f~l~~~~g~~v~-l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVS-LADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCCCCeEEEcCCCcEEe-hHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 445566666665544332 22234889999999999 9999999999999999985 68888887653
Q ss_pred -----------chHHHHhcCCCCCc---------EEEEE-eCCeeeeEEeCC--CCHHHHHHHHHHH
Q 030351 121 -----------YPQIADTYRIEALP---------TFILF-KDGKPSDRFVSQ--FNIVFFVFLENLI 164 (179)
Q Consensus 121 -----------~~~l~~~~~v~~~P---------t~~~~-~~G~~~~~~~G~--~~~~~~~~i~~~i 164 (179)
...+++.||+...| +.+++ ++|+++..+.+. .....+..+.+.+
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred CCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 12677889998777 76666 799999887543 3333444444433
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.18 E-value=8.4e-11 Score=81.73 Aligned_cols=90 Identities=34% Similarity=0.529 Sum_probs=68.8
Q ss_pred CCCceeccccChhhHHHHHhcCCCcEEEEEecC-CChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------------
Q 030351 56 LLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK------------- 120 (179)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------------- 120 (179)
..|.+.+...+.+.+. +.+..+++++|.||+. ||+.|+...+.+.++.++++. ++.++.|..|.
T Consensus 4 ~~P~f~l~~~~g~~~~-l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVS-LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEE-GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEE-HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 3455666655544432 2223589999999999 999999999999999999885 59999998764
Q ss_pred --------chHHHHhcCCC------CCcEEEEE-eCCeeee
Q 030351 121 --------YPQIADTYRIE------ALPTFILF-KDGKPSD 146 (179)
Q Consensus 121 --------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~ 146 (179)
+..+.+.|++. .+|+++++ ++|+++.
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 33677789999 89997777 7887764
No 119
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.16 E-value=2.5e-10 Score=81.60 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCCceeccccChhhHHHHHhcCCCcEEEEEecCC-ChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-------------
Q 030351 56 LLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATW-CGPCQYMAPILNEVGAALKDKIQVVKIDTEKY------------- 121 (179)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~w-C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~------------- 121 (179)
..|.+.+.+.+.+.+. +-...+|++||+||+.| |++|+...|.|.+++++++ ++.++.|+.|..
T Consensus 5 ~aP~f~l~~~~g~~~~-l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~ 82 (143)
T cd03014 5 KAPDFTLVTSDLSEVS-LADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVD 82 (143)
T ss_pred CCCCcEEECCCCcEEe-HHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCC
Confidence 3445555554443321 22224889999999998 7999999999999999986 588888887531
Q ss_pred ----------hHHHHhcCCCC------CcEEEEE-eCCeeeeEEeCCC
Q 030351 122 ----------PQIADTYRIEA------LPTFILF-KDGKPSDRFVSQF 152 (179)
Q Consensus 122 ----------~~l~~~~~v~~------~Pt~~~~-~~G~~~~~~~G~~ 152 (179)
..+.+.|++.. .|+.+++ ++|+++....|..
T Consensus 83 ~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 83 NVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred CceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCC
Confidence 35666788763 5787777 7999998888763
No 120
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.11 E-value=2.8e-10 Score=80.35 Aligned_cols=90 Identities=26% Similarity=0.452 Sum_probs=59.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhc---CCCCCcEEEEE-eC
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY---RIEALPTFILF-KD 141 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~-~~ 141 (179)
+.+....+....++..++.|..+|||.|+...|.+.++++..+ ++.+-.+..|++.++.++| |...+|+|+++ ++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3333444444446677888999999999999999999999976 4888888888888888776 57789999999 67
Q ss_pred CeeeeEEeCCCCHHHH
Q 030351 142 GKPSDRFVSQFNIVFF 157 (179)
Q Consensus 142 G~~~~~~~G~~~~~~~ 157 (179)
|++++++ |.++...-
T Consensus 108 ~~~lg~w-gerP~~~~ 122 (129)
T PF14595_consen 108 GKELGRW-GERPKEVQ 122 (129)
T ss_dssp --EEEEE-ESS-HHHH
T ss_pred CCEeEEE-cCCCHHHh
Confidence 8888887 55554443
No 121
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.09 E-value=1.7e-09 Score=80.00 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=59.7
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hHHHH
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY----------------------------PQIAD 126 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~----------------------------~~l~~ 126 (179)
.||++||+|| +.||+.|....+.|.++++++.+ ++.++.|..|.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 89999999999999999999974 477777766532 24455
Q ss_pred hcCCC------CCcEEEEE-eCCeeeeEEeCCC
Q 030351 127 TYRIE------ALPTFILF-KDGKPSDRFVSQF 152 (179)
Q Consensus 127 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~ 152 (179)
.|++. ..|+.+++ ++|+++.++.+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCC
Confidence 67876 46787666 7999998886643
No 122
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.07 E-value=1.4e-09 Score=77.83 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=34.6
Q ss_pred CCcE-EEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC
Q 030351 78 DKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK 120 (179)
Q Consensus 78 ~k~v-vv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~ 120 (179)
++++ +++||+.||+.|+...|.|.++++++.+ ++.++.|+.+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3445 5545699999999999999999999863 58888888764
No 123
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.06 E-value=1.1e-09 Score=82.14 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chHHHHhcC
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------------------------YPQIADTYR 129 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 129 (179)
.||++||+|| +.||+.|....+.|.++++++.+ ++.++.|+.|. +..+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4889999999 99999999999999999999863 57777777653 225667788
Q ss_pred CC------CCcEEEEE-eCCeeeeEEeC
Q 030351 130 IE------ALPTFILF-KDGKPSDRFVS 150 (179)
Q Consensus 130 v~------~~Pt~~~~-~~G~~~~~~~G 150 (179)
|. ..|+.+++ ++|+++..+.+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 86 35876666 79999877654
No 124
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.05 E-value=1.7e-09 Score=77.59 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=66.6
Q ss_pred CCceeccccChhhHHHHHhcCC-CcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------------
Q 030351 57 LPVVEAKKQTFSSLDDLLQKSD-KPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK------------- 120 (179)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~-k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------------- 120 (179)
.|.+.+.+.+.+.+. +-...+ ++++|.|| ++||+.|....|.+.++++++++ ++.++.|+.|.
T Consensus 7 ~p~~~l~~~~g~~v~-l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 7 APDFELPDQNGQEVR-LSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred CCCcEecCCCCCEEe-HHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 344444444443332 112235 78888887 89999999999999999999974 58888886653
Q ss_pred --------c--hHHHHhcCCC----CCc--EEEEE-eCCeeeeEEeCCC
Q 030351 121 --------Y--PQIADTYRIE----ALP--TFILF-KDGKPSDRFVSQF 152 (179)
Q Consensus 121 --------~--~~l~~~~~v~----~~P--t~~~~-~~G~~~~~~~G~~ 152 (179)
. ..+.+.|++. ++| +++++ ++|+++.++.|..
T Consensus 86 ~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 86 TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred CceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 2 4567778887 333 65566 7999999988875
No 125
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.04 E-value=1.6e-09 Score=78.84 Aligned_cols=103 Identities=26% Similarity=0.404 Sum_probs=66.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchH-HH--HHHHHHhcCCeEEEEEeCCCchHHHHhc--------CCCCCc
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAP-IL--NEVGAALKDKIQVVKIDTEKYPQIADTY--------RIEALP 134 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p-~l--~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~P 134 (179)
+.+.|+.. .+++|+++|.++.+||..|+.|.. .| .++++.+..++.-++||.++.+++...| +..|+|
T Consensus 26 ~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 26 GEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp SHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred CHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 34455444 456899999999999999999987 44 6777777767889999999999998888 889999
Q ss_pred EEEEE-eCCeeeeEEeCCCCH------HHHHHHHHHHHHHhcc
Q 030351 135 TFILF-KDGKPSDRFVSQFNI------VFFVFLENLICASLQN 170 (179)
Q Consensus 135 t~~~~-~~G~~~~~~~G~~~~------~~~~~i~~~i~~~~~~ 170 (179)
+.+|. .+|+.+... ++.+. ..+..+.+.|...+++
T Consensus 105 l~vfltPdg~p~~~~-tY~P~~~~~g~~~f~~~l~~i~~~w~~ 146 (163)
T PF03190_consen 105 LTVFLTPDGKPFFGG-TYFPPEDRYGRPGFLQLLERIAELWKE 146 (163)
T ss_dssp EEEEE-TTS-EEEEE-SS--SS-BTTB--HHHHHHHHHHHHHH
T ss_pred ceEEECCCCCeeeee-eecCCCCCCCCccHHHHHHHHHHHHHH
Confidence 98888 899887643 23332 2455555555555553
No 126
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.03 E-value=1.6e-09 Score=76.87 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhc-CCeEEEEEeCCC----------------------chHHHHhcCCCC
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEK----------------------YPQIADTYRIEA 132 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~----------------------~~~l~~~~~v~~ 132 (179)
.+++++|+|| +.||+.|....+.+.++++++. +++.++.|..|. +..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 7899999999999999999985 358888887653 236667788887
Q ss_pred Cc---------EEEEE-eCCeeeeEEeCCCC
Q 030351 133 LP---------TFILF-KDGKPSDRFVSQFN 153 (179)
Q Consensus 133 ~P---------t~~~~-~~G~~~~~~~G~~~ 153 (179)
.| +++++ ++|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 76 55555 78999999988875
No 127
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.03 E-value=2.4e-09 Score=74.17 Aligned_cols=77 Identities=18% Similarity=0.537 Sum_probs=56.3
Q ss_pred ChhhHHHHHhc---CCCcEEEEEecC-------CChhhccchHHHHHHHHHhcCCeEEEEEeCCC-------chHHHH--
Q 030351 66 TFSSLDDLLQK---SDKPVLVDFYAT-------WCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-------YPQIAD-- 126 (179)
Q Consensus 66 ~~~~~~~~~~~---~~k~vvv~F~a~-------wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-------~~~l~~-- 126 (179)
.+++|.+.+.. .+++++|+|+++ |||.|+...|.+++.....+++..++.|.+.. +..+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 56778888764 468999999854 99999999999999888877778888888743 235555
Q ss_pred hcCCCCCcEEEEEeCC
Q 030351 127 TYRIEALPTFILFKDG 142 (179)
Q Consensus 127 ~~~v~~~Pt~~~~~~G 142 (179)
+++++++||++-+.++
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 6999999999999776
No 128
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=7.8e-09 Score=71.05 Aligned_cols=104 Identities=16% Similarity=0.356 Sum_probs=81.0
Q ss_pred hhhHHHHHh-cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 67 FSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 67 ~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
....++.+. ...+.+||.|...|-|.|..|...|.+++++..+-..+|-||+|+-+++.+.|++...|+++||-+++.+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 344555554 4479999999999999999999999999999998788999999999999999999999998888666654
Q ss_pred e---------EEeCCC-CHHHHH-HHHHHHHHHhcc
Q 030351 146 D---------RFVSQF-NIVFFV-FLENLICASLQN 170 (179)
Q Consensus 146 ~---------~~~G~~-~~~~~~-~i~~~i~~~~~~ 170 (179)
. ++.+.. +++++. .|+..-+++.++
T Consensus 91 kiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KG 126 (142)
T KOG3414|consen 91 KIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKG 126 (142)
T ss_pred EEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcC
Confidence 3 444544 344455 455555666553
No 129
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.00 E-value=1.5e-09 Score=77.31 Aligned_cols=61 Identities=30% Similarity=0.330 Sum_probs=45.1
Q ss_pred CceeccccChhhHHHHHhcCCCcEEEEEecCCChh-hccchHHHHHHHHHhcC----CeEEEEEeCC
Q 030351 58 PVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGP-CQYMAPILNEVGAALKD----KIQVVKIDTE 119 (179)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~-C~~~~p~l~~~~~~~~~----~v~~~~vd~d 119 (179)
|.+.+.+.+...+. +-...+++++|.||++||++ |....+.+.++++++++ ++.++.|..|
T Consensus 3 p~f~l~~~~g~~~~-l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 3 PDFTLTDQDGRPVT-LSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CceEEEcCCCCEEc-hHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 34444444444332 12225889999999999998 99999999999999875 3888888765
No 130
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7e-10 Score=83.19 Aligned_cols=83 Identities=29% Similarity=0.630 Sum_probs=71.3
Q ss_pred hhhHHHHHh-cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCC------CCcEEEE
Q 030351 67 FSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIE------ALPTFIL 138 (179)
Q Consensus 67 ~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~------~~Pt~~~ 138 (179)
.+.+++.+. ++.+.|+|.|++.|.+.|+.+.|.+.++..+|.. .+.|.+||+...++...+|+|. ..||+++
T Consensus 132 ~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~il 211 (265)
T KOG0914|consen 132 MQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYIL 211 (265)
T ss_pred hhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEE
Confidence 344444443 4478999999999999999999999999999984 5999999999999999999887 6899999
Q ss_pred EeCCeeeeEEe
Q 030351 139 FKDGKPSDRFV 149 (179)
Q Consensus 139 ~~~G~~~~~~~ 149 (179)
|++|+++.|..
T Consensus 212 Fq~gkE~~RrP 222 (265)
T KOG0914|consen 212 FQKGKEVSRRP 222 (265)
T ss_pred EccchhhhcCc
Confidence 99999987654
No 131
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.97 E-value=1.8e-09 Score=84.88 Aligned_cols=90 Identities=23% Similarity=0.397 Sum_probs=72.3
Q ss_pred ecccc-ChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 61 EAKKQ-TFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 61 ~~~~~-~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
.+.++ +.+.|.+.+.+. +..|||.||.+.++.|..+...|..++.+|+. +.|+.|...... +...|.+..+||++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEEE
Confidence 34444 457788887654 45789999999999999999999999999996 999999988754 78899999999999
Q ss_pred EEeCCeeeeEEeCCC
Q 030351 138 LFKDGKPSDRFVSQF 152 (179)
Q Consensus 138 ~~~~G~~~~~~~G~~ 152 (179)
+|++|..++.+.|..
T Consensus 204 vYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEETTEEEEEECTGG
T ss_pred EEECCEEEEeEEehH
Confidence 999999999988864
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.96 E-value=3.9e-09 Score=63.36 Aligned_cols=60 Identities=35% Similarity=0.791 Sum_probs=51.8
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHH---hcCCCCCcEEEEEeCC
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD---TYRIEALPTFILFKDG 142 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G 142 (179)
++.||+.||++|+.+.+.+.++ .....++.+..++++...+... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999999 4445569999999998876665 8999999999999776
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.92 E-value=2.1e-09 Score=68.49 Aligned_cols=58 Identities=28% Similarity=0.466 Sum_probs=44.4
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHh-----cCCCCCcEEEEEeCCeeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT-----YRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~G~~~~ 146 (179)
++.||++||++|+.+++.|.++. +.+..+|++++...... +++.++|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 56899999999999999886652 44556888877666555 389999997 577886543
No 134
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.92 E-value=6.4e-09 Score=65.30 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=49.0
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchH----HHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
+..|+++||++|+..++.|++ .++.+..+|++++.. +.+.+++.++|++++. |+. +.|. +.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHH
Confidence 567999999999999988865 147888899987654 5567999999999874 553 5564 44544
Q ss_pred H
Q 030351 158 V 158 (179)
Q Consensus 158 ~ 158 (179)
.
T Consensus 70 ~ 70 (74)
T TIGR02196 70 D 70 (74)
T ss_pred H
Confidence 3
No 135
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.90 E-value=2.4e-08 Score=75.72 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCCcEEE-EEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chHHHHh
Q 030351 77 SDKPVLV-DFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADT 127 (179)
Q Consensus 77 ~~k~vvv-~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 127 (179)
.||.++| +||++||+.|....+.|.++++++++ ++.++.|++|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4676655 68899999999999999999999874 47788887653 2356667
Q ss_pred cCCC------CCcEEEEE-eCCeeeeEE----eCCCCHHHHH-HHHHH
Q 030351 128 YRIE------ALPTFILF-KDGKPSDRF----VSQFNIVFFV-FLENL 163 (179)
Q Consensus 128 ~~v~------~~Pt~~~~-~~G~~~~~~----~G~~~~~~~~-~i~~~ 163 (179)
||+. .+|+++++ ++|++.... .+.++.+++. .++.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8884 47998777 788877655 3445666654 44443
No 136
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.89 E-value=1.1e-08 Score=76.40 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=37.6
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE 119 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d 119 (179)
..||+++|.|||+||+.|+ ..+.|++++++|++ ++.++.+.++
T Consensus 23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 3589999999999999997 58899999999985 5999999874
No 137
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.88 E-value=7.3e-08 Score=66.78 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=70.5
Q ss_pred hhhHHHHHhcCCCcEEEEEecC----CChhhccchHHHHHHHHHhcCCeEEEEEeCCCc--hHHHHhcCCCCCcEEEEE-
Q 030351 67 FSSLDDLLQKSDKPVLVDFYAT----WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY--PQIADTYRIEALPTFILF- 139 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~----wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~- 139 (179)
.++..+...+++|.++|+++++ ||..|+..... +++.+.+..++.+...|++.. ..++..+++.++|++.++
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIM 84 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEE
Confidence 3344444556789999999999 89999654321 445555555788889998754 578889999999998887
Q ss_pred -eCC--eeeeEEeCCCCHHHHH-HHHHHH
Q 030351 140 -KDG--KPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 140 -~~G--~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
+++ +.+.++.|..+.+++. .+...+
T Consensus 85 ~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 85 LKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred ecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 333 4578999999999986 444443
No 138
>PRK15000 peroxidase; Provisional
Probab=98.86 E-value=2.2e-08 Score=75.86 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=60.6
Q ss_pred CCCcEEEEEec-CCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hHHHH
Q 030351 77 SDKPVLVDFYA-TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY----------------------------PQIAD 126 (179)
Q Consensus 77 ~~k~vvv~F~a-~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~----------------------------~~l~~ 126 (179)
.+|.+||+||+ .||+.|....+.|.++++++.+ ++.++.|++|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 5999999999999999999984 588888877631 25556
Q ss_pred hcCCC------CCcEEEEE-eCCeeeeEEeCC
Q 030351 127 TYRIE------ALPTFILF-KDGKPSDRFVSQ 151 (179)
Q Consensus 127 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~ 151 (179)
.|++. .+|+.+++ ++|++...+.|.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecC
Confidence 68887 68987777 699998877664
No 139
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.86 E-value=1.1e-09 Score=82.92 Aligned_cols=103 Identities=25% Similarity=0.460 Sum_probs=87.0
Q ss_pred eccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
.++.++.+|+..++ ..-+++.|+++|||.|....|.|+.++.--.+ .|.+..||+..++.|.-+|-|...|||+-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 77888999998887 45789999999999999999999998876444 489999999999999999999999999999
Q ss_pred eCCeeeeEEeCCCCHHHHH-HHHHHHHHH
Q 030351 140 KDGKPSDRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 140 ~~G~~~~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
++|. -.|+.|.++..++. +++..-.+.
T Consensus 102 kDGe-FrrysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 102 KDGE-FRRYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred eccc-cccccCcccchhHHHHHHhhhhhc
Confidence 9996 44688999988887 555443333
No 140
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.84 E-value=4.4e-08 Score=74.96 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=66.1
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-----------chHHHHhcCCCCCcEEEEE-eCC-ee
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-----------YPQIADTYRIEALPTFILF-KDG-KP 144 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~-~~G-~~ 144 (179)
++.-+++||.+.|++|..+.|++..++++++ +.++.|++|. +..+.++++|..+|+++++ .++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 6778999999999999999999999999994 7777888773 5789999999999998888 455 44
Q ss_pred eeEEeCCCCHHHHH
Q 030351 145 SDRFVSQFNIVFFV 158 (179)
Q Consensus 145 ~~~~~G~~~~~~~~ 158 (179)
..--.|..+.+++.
T Consensus 198 ~pv~~G~~s~~~L~ 211 (215)
T PF13728_consen 198 YPVSQGFMSLDELE 211 (215)
T ss_pred EEEeeecCCHHHHH
Confidence 44557889988774
No 141
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.84 E-value=2.5e-08 Score=74.73 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chHHHHhcC
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------------------------YPQIADTYR 129 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 129 (179)
.||++||+|| +.||+.|....+.|.+.++++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4789999999 99999999999999999999874 47788887653 346778899
Q ss_pred C----CCC--cEEEEE-eCCeeeeEEeC
Q 030351 130 I----EAL--PTFILF-KDGKPSDRFVS 150 (179)
Q Consensus 130 v----~~~--Pt~~~~-~~G~~~~~~~G 150 (179)
+ .++ |+.+++ ++|+++..+..
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 8 366 887777 79998876543
No 142
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.3e-08 Score=69.41 Aligned_cols=76 Identities=22% Similarity=0.498 Sum_probs=61.1
Q ss_pred ChhhHHHHHhc--CCCcEEEEEecC--------CChhhccchHHHHHHHHHhcCCeEEEEEeCCC-------chHHHHhc
Q 030351 66 TFSSLDDLLQK--SDKPVLVDFYAT--------WCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-------YPQIADTY 128 (179)
Q Consensus 66 ~~~~~~~~~~~--~~k~vvv~F~a~--------wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-------~~~l~~~~ 128 (179)
.++.|++++.+ +++.++|+|+++ |||.|.+..|.+.+..+..++.+.|+.|++-+ +..+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 45667766653 356699999964 99999999999999888888889999999854 34667777
Q ss_pred CC-CCCcEEEEEeC
Q 030351 129 RI-EALPTFILFKD 141 (179)
Q Consensus 129 ~v-~~~Pt~~~~~~ 141 (179)
++ .++||++=|++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 77 99999998864
No 143
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.81 E-value=1.8e-08 Score=74.37 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=75.7
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+..+|-+...+ ...||+.||-+.-..|+-|...|+.++..+-+ ..|+.||+...+-++.+++|+.+|++++|++|+.+
T Consensus 73 ~Ekdf~~~~~k-S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~ 150 (211)
T KOG1672|consen 73 SEKDFFEEVKK-SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTV 150 (211)
T ss_pred cHHHHHHHhhc-CceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEE
Confidence 35556666544 45688999999999999999999999999886 99999999999999999999999999999999999
Q ss_pred eEEeCCC
Q 030351 146 DRFVSQF 152 (179)
Q Consensus 146 ~~~~G~~ 152 (179)
+++.|..
T Consensus 151 D~iVGF~ 157 (211)
T KOG1672|consen 151 DYVVGFT 157 (211)
T ss_pred EEEeeHh
Confidence 9999874
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.77 E-value=2e-08 Score=65.00 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=46.1
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-----HHHHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----QIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
|+.|+++||++|+.+++.|+++. .+..+.++.+|.+++. .+.+.+++..+|+++ -+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 46899999999999999999977 3334778888877543 366678999999983 466543
No 145
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.77 E-value=4.5e-08 Score=66.41 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=73.2
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecC--CChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEe
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYAT--WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~--wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 140 (179)
..++.++++.++...+ ..+++|..+ -++.+.+..-++.++.+.+++.+....++.+...++..+|++..+|+++|++
T Consensus 12 ~~vd~~~ld~~l~~~~-~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 12 PRVDADTLDAFLAAPG-DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFR 90 (107)
T ss_dssp EEE-CCCHHHHHHCCS-CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred eeechhhHHHHHhCCC-cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEE
Confidence 4456677778876644 455545443 2566667777999999999998888888877788999999999999999999
Q ss_pred CCeeeeEEeCCCCHHHH
Q 030351 141 DGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 141 ~G~~~~~~~G~~~~~~~ 157 (179)
+|+.++.+.|.+++.++
T Consensus 91 ~g~~lG~i~gi~dW~dY 107 (107)
T PF07449_consen 91 DGRYLGAIEGIRDWADY 107 (107)
T ss_dssp TTEEEEEEESSSTHHHH
T ss_pred CCEEEEEecCeeccccC
Confidence 99999999999998763
No 146
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.1e-09 Score=78.24 Aligned_cols=92 Identities=22% Similarity=0.440 Sum_probs=84.2
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHH
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIV 155 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~ 155 (179)
.+++..++.||+.||..|+.+...++.+++.. .++.++..+.++.++++..+.+...|+++++..|+.+.++.|..+..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 37889999999999999999999999999999 46999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 030351 156 FFVFLENLICASL 168 (179)
Q Consensus 156 ~~~~i~~~i~~~~ 168 (179)
....++.+.....
T Consensus 94 ~~~~~~~~~~~~~ 106 (227)
T KOG0911|consen 94 LVSKVEKLAESGS 106 (227)
T ss_pred HHHHHHHhhhhcc
Confidence 8887777665554
No 147
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.72 E-value=2.6e-07 Score=70.09 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=54.4
Q ss_pred Cc-EEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chHHHHhcC
Q 030351 79 KP-VLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADTYR 129 (179)
Q Consensus 79 k~-vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~~ 129 (179)
+. +++.||++||+.|....+.|.++++++.+ ++.++.|++|. +..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 45588899999999999999999999974 48888887764 235667788
Q ss_pred CC----CCc----EEEEE-eCCeeeeEEeC
Q 030351 130 IE----ALP----TFILF-KDGKPSDRFVS 150 (179)
Q Consensus 130 v~----~~P----t~~~~-~~G~~~~~~~G 150 (179)
+. +.| +.+++ ++|++...+.+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEec
Confidence 76 334 44455 79998877665
No 148
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.72 E-value=2.2e-07 Score=71.13 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCcE-EEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------hHHHHh
Q 030351 77 SDKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY---------------------------PQIADT 127 (179)
Q Consensus 77 ~~k~v-vv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 127 (179)
.|+.+ ++.||++||+.|..+.+.|.++++++.+ ++.++.|++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 36664 6788999999999999999999999974 588888887642 255667
Q ss_pred cCCC-------CCcEEEEE-eCCeeeeEEe
Q 030351 128 YRIE-------ALPTFILF-KDGKPSDRFV 149 (179)
Q Consensus 128 ~~v~-------~~Pt~~~~-~~G~~~~~~~ 149 (179)
||+. .+|+++++ ++|++...+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 8873 57987777 7899877653
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.70 E-value=2.7e-07 Score=72.12 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-----------hHHHHhcCCCCCcEEEEE-eC-Cee
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-----------PQIADTYRIEALPTFILF-KD-GKP 144 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~-~~-G~~ 144 (179)
++.-+++||...|++|..+.|+++.++++++ +.++.|++|.. ...+++++|..+|+++++ .+ ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5678999999999999999999999999996 77777877754 468899999999998887 45 444
Q ss_pred eeEEeCCCCHHHHH-HHHHHH
Q 030351 145 SDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 145 ~~~~~G~~~~~~~~-~i~~~i 164 (179)
.---.|..+.+++. -|...+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 44457999999886 454443
No 150
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.69 E-value=1.2e-06 Score=61.12 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=74.5
Q ss_pred hhhHHHHHh-cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcE-EEEEeCCee
Q 030351 67 FSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT-FILFKDGKP 144 (179)
Q Consensus 67 ~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt-~~~~~~G~~ 144 (179)
.-..++.+. ..++.++|.|..+|-+.|.++...|.+++++.+.-..+|.||+++-+++.+.|.+. -|. ++||-+++.
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 344555554 55899999999999999999999999999999987899999999999999999999 776 555556665
Q ss_pred ee---------EEeCCC-CHHHHH-HHHHHHHHHhcc
Q 030351 145 SD---------RFVSQF-NIVFFV-FLENLICASLQN 170 (179)
Q Consensus 145 ~~---------~~~G~~-~~~~~~-~i~~~i~~~~~~ 170 (179)
+. ++.+.. +.+++. -++..-+++.++
T Consensus 87 m~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kG 123 (133)
T PF02966_consen 87 MMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKG 123 (133)
T ss_dssp EEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcC
Confidence 53 344444 355565 444444555543
No 151
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.68 E-value=3.1e-07 Score=58.79 Aligned_cols=68 Identities=25% Similarity=0.486 Sum_probs=50.7
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeC-CCCHHHHH
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVS-QFNIVFFV 158 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~~~~ 158 (179)
.+++++|++|..+...++++..+++ +.+-.+|..+.+++ .+|||.++|++++ ||+ .++.| ..+.+++.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELK 72 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHH
Confidence 3468889999999999999999984 66666777666676 9999999999955 565 34678 55555554
No 152
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.67 E-value=2.6e-07 Score=72.52 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=66.2
Q ss_pred cccCCCceecccc-Chh----hHHHHHhcCCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC-----
Q 030351 53 KRRLLPVVEAKKQ-TFS----SLDDLLQKSDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----- 120 (179)
Q Consensus 53 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~----- 120 (179)
.+...|.+.+..+ +.+ ++.++. .++.+|++|| +.||+.|..+.+.|.+.++++.+ ++.++.|.+|.
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~--kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYF--KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHK 147 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHc--CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 3445666665542 221 223322 4667878777 89999999999999999999974 47788887664
Q ss_pred -----------------------chHHHHhcCCC-----CCcEEEEE-eCCeeeeEE
Q 030351 121 -----------------------YPQIADTYRIE-----ALPTFILF-KDGKPSDRF 148 (179)
Q Consensus 121 -----------------------~~~l~~~~~v~-----~~Pt~~~~-~~G~~~~~~ 148 (179)
+..+++.||+. ..|+.+++ ++|+++..+
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 23566788885 47887777 699988765
No 153
>PRK13189 peroxiredoxin; Provisional
Probab=98.65 E-value=4.9e-07 Score=69.57 Aligned_cols=73 Identities=10% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCcE-EEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------hHHHHh
Q 030351 77 SDKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY---------------------------PQIADT 127 (179)
Q Consensus 77 ~~k~v-vv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 127 (179)
.||.+ +++||++||+.|..+.+.|.++++++.+ ++.++.|++|.. ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 46644 4577899999999999999999999874 477888877632 255667
Q ss_pred cCCC-------CCcEEEEE-eCCeeeeEEe
Q 030351 128 YRIE-------ALPTFILF-KDGKPSDRFV 149 (179)
Q Consensus 128 ~~v~-------~~Pt~~~~-~~G~~~~~~~ 149 (179)
||+. .+|+.+++ ++|++.....
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 7865 46776666 7998876655
No 154
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.64 E-value=1.4e-07 Score=73.11 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC---------------------------------------
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--------------------------------------- 118 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~--------------------------------------- 118 (179)
++.+++.|..+.||+|+++.+.++++.+. ++.++.+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 68889999999999999999998887542 344444321
Q ss_pred -----CCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 119 -----EKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 119 -----d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
+++.++++++||+++|+++ +.||+.+ .|..+.+++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~ 224 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMK 224 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHH
Confidence 1133777889999999997 7788754 7999988886
No 155
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.62 E-value=7.4e-07 Score=69.35 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=67.1
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-----------chHHHHhcCCCCCcEEEEE-eC-Cee
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-----------YPQIADTYRIEALPTFILF-KD-GKP 144 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~-~~-G~~ 144 (179)
++.-+++||...|++|..+.|+++.++++++ +.++.|++|. +....++++|..+|+++++ .+ ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5677999999999999999999999999996 6666666653 2356689999999998888 44 455
Q ss_pred eeEEeCCCCHHHHH-HHHHHHH
Q 030351 145 SDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 145 ~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
.---.|..+.+++. -|.....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 55567999999986 4554433
No 156
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.57 E-value=9.2e-07 Score=67.74 Aligned_cols=74 Identities=5% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCCcEEE-EEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------hHHHHh
Q 030351 77 SDKPVLV-DFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY---------------------------PQIADT 127 (179)
Q Consensus 77 ~~k~vvv-~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 127 (179)
.||.++| +||++||+.|..+.+.|.++++++.+ ++.++.|++|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4666655 77899999999999999999999974 588888877632 255567
Q ss_pred cCCC-------CCcEEEEE-eCCeeeeEEeC
Q 030351 128 YRIE-------ALPTFILF-KDGKPSDRFVS 150 (179)
Q Consensus 128 ~~v~-------~~Pt~~~~-~~G~~~~~~~G 150 (179)
||+. ..|+.+++ .+|++...+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~ 142 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYY 142 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEec
Confidence 7763 35776666 79988876543
No 157
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.55 E-value=3.1e-07 Score=59.94 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=48.3
Q ss_pred EEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch----HHHHhcC--CCCCcEEEEEeCCeee
Q 030351 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP----QIADTYR--IEALPTFILFKDGKPS 145 (179)
Q Consensus 81 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~ 145 (179)
-|+.|+.+||++|++.+..|+++..++. ++.+..+|++++. ++...++ +..+|+++ .+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE
Confidence 3678999999999999999999998764 4888888888652 4555554 58899975 467654
No 158
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.2e-06 Score=62.09 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=83.9
Q ss_pred cccCCCceeccccChhhHHHHHhcCCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC-----------
Q 030351 53 KRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE----------- 119 (179)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d----------- 119 (179)
.+...|.+.+...+.+.+ .+....|++||++|| ..++|.|-.+...|++...++.+ +..++.|..|
T Consensus 6 ~G~~aPdF~Lp~~~g~~v-~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k 84 (157)
T COG1225 6 VGDKAPDFELPDQDGETV-SLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEK 84 (157)
T ss_pred CCCcCCCeEeecCCCCEE-ehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHH
Confidence 345678888888777663 344456889999999 58999999999999999988885 5888888765
Q ss_pred ----------CchHHHHhcCCCC------------Cc-EEEEEeCCeeeeEEeCCCCHHHHHHHHHHHHH
Q 030351 120 ----------KYPQIADTYRIEA------------LP-TFILFKDGKPSDRFVSQFNIVFFVFLENLICA 166 (179)
Q Consensus 120 ----------~~~~l~~~~~v~~------------~P-t~~~~~~G~~~~~~~G~~~~~~~~~i~~~i~~ 166 (179)
.+..+++.|||.+ .+ ||+|.++|++...+...........+.+.+++
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 3567888898854 23 45555899999888666666555555555544
No 159
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.47 E-value=2.1e-06 Score=63.16 Aligned_cols=40 Identities=28% Similarity=0.569 Sum_probs=34.3
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEE
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~v 116 (179)
.+++.|+.|+...||+|+.+.+.+.++.+++++++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 3688999999999999999999999999998776665544
No 160
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.46 E-value=2.9e-06 Score=62.63 Aligned_cols=100 Identities=21% Similarity=0.365 Sum_probs=76.8
Q ss_pred ccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCC--CCcEEEEE
Q 030351 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFILF 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~ 139 (179)
+.+++.+++..+......++++.|..........+...++++++++++++.|+.+|++....+++.+++. .+|+++++
T Consensus 79 v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~ 158 (184)
T PF13848_consen 79 VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIF 158 (184)
T ss_dssp CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEE
T ss_pred ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEE
Confidence 3455667777776543334777787777888889999999999999999999999999989999999999 89999988
Q ss_pred e--CCeeeeEEeCCCCHHHHH-HHH
Q 030351 140 K--DGKPSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 140 ~--~G~~~~~~~G~~~~~~~~-~i~ 161 (179)
+ +++......|..+.+.+. |++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 159 DSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp ETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred ECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 6 444333336778887776 443
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.44 E-value=7.4e-07 Score=67.21 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=53.6
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEE--eCC------------------------------------
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI--DTE------------------------------------ 119 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~v--d~d------------------------------------ 119 (179)
++..++.|..+.|++|+++.+.+.+ ..+++.+..+ ...
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5889999999999999999999877 2223333333 211
Q ss_pred -------CchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 120 -------KYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 120 -------~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
++..+++++||.++|+++ +++|+. +.|..+.+++.
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~ 194 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLE 194 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHH
Confidence 123677789999999996 888875 56888877764
No 162
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.43 E-value=1.9e-06 Score=65.12 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCcEEEEEec-CCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hHHHH
Q 030351 77 SDKPVLVDFYA-TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY----------------------------PQIAD 126 (179)
Q Consensus 77 ~~k~vvv~F~a-~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~----------------------------~~l~~ 126 (179)
.||.++|+||+ .||+.|....+.|.++++++.+ ++.++.|++|.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47899999995 8899999999999999999985 488888877632 25667
Q ss_pred hcCCC------CCcEEEEE-eCCeeeeEEeC
Q 030351 127 TYRIE------ALPTFILF-KDGKPSDRFVS 150 (179)
Q Consensus 127 ~~~v~------~~Pt~~~~-~~G~~~~~~~G 150 (179)
.||+. .+|+.+++ ++|+++....+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 78885 35776666 79998876655
No 163
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.40 E-value=2e-06 Score=67.39 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC--------------------------------------
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-------------------------------------- 119 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d-------------------------------------- 119 (179)
++.+|+.|..+.||+|+++.+.+.++.+. +.+.+..+...
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 57789999999999999999998877654 23555444210
Q ss_pred ------------CchHHHHhcCCCCCcEEEEEe-CCeeeeEEeCCCCHHHHHH
Q 030351 120 ------------KYPQIADTYRIEALPTFILFK-DGKPSDRFVSQFNIVFFVF 159 (179)
Q Consensus 120 ------------~~~~l~~~~~v~~~Pt~~~~~-~G~~~~~~~G~~~~~~~~~ 159 (179)
++..+.+++||+|+|++++-+ +| .+..+.|..+.+++..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~ 246 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAE 246 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHH
Confidence 012466779999999997764 45 4455789999888853
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.39 E-value=3e-06 Score=60.57 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=30.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEE
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVK 115 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~ 115 (179)
.+++|+.|+.++||+|+.+.+.++++..++++ +.++.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEE
Confidence 67889999999999999999999998887764 44433
No 165
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.38 E-value=1.9e-06 Score=53.68 Aligned_cols=51 Identities=16% Similarity=0.375 Sum_probs=38.8
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhc----CCCCCcEEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY----RIEALPTFIL 138 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~----~v~~~Pt~~~ 138 (179)
++.|+++||++|+.++..+++. ++.+..+|++.+....+.+ ++.++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5679999999999998887662 3667778887765544443 7889999865
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.38 E-value=4.1e-06 Score=72.69 Aligned_cols=76 Identities=18% Similarity=0.378 Sum_probs=63.3
Q ss_pred CCcE-EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHH
Q 030351 78 DKPV-LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVF 156 (179)
Q Consensus 78 ~k~v-vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~ 156 (179)
++++ +-.|.+++|++|.+....+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+.+ +.|..+.++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~ 549 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEE 549 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHH
Confidence 4565 555689999999999999999999987 48888999999999999999999999976 45533 458777777
Q ss_pred HH
Q 030351 157 FV 158 (179)
Q Consensus 157 ~~ 158 (179)
+.
T Consensus 550 ~~ 551 (555)
T TIGR03143 550 ML 551 (555)
T ss_pred HH
Confidence 64
No 167
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.31 E-value=1.1e-05 Score=54.51 Aligned_cols=92 Identities=25% Similarity=0.326 Sum_probs=65.0
Q ss_pred ChhhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchH----HHHhcCCC-CCcEEEEE
Q 030351 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIE-ALPTFILF 139 (179)
Q Consensus 66 ~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~v~-~~Pt~~~~ 139 (179)
+.+++++++... .++++|+=.++.|+-.......|+++....++.+.+|.+|+-++++ ++++|||. .-|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 567888888764 6777777778899999999999999999988779999999998874 56789999 57999999
Q ss_pred eCCeeeeEE-eCCCCHHHH
Q 030351 140 KDGKPSDRF-VSQFNIVFF 157 (179)
Q Consensus 140 ~~G~~~~~~-~G~~~~~~~ 157 (179)
+||+.+-.- .+.++.+.+
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 999987433 344454443
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.29 E-value=8.3e-06 Score=70.17 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
+..-+..|..++|++|......+++++...+ ++.+-.+|..+++++.++|+|.++|++++ ||+. .+.|..+.+++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~ 190 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEI 190 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHH
Confidence 3444888999999999999999999999877 58899999999999999999999999965 5543 35588877766
Q ss_pred H
Q 030351 158 V 158 (179)
Q Consensus 158 ~ 158 (179)
.
T Consensus 191 ~ 191 (517)
T PRK15317 191 L 191 (517)
T ss_pred H
Confidence 4
No 169
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.28 E-value=1.7e-05 Score=57.38 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHh--cCCeEEEEEeC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAAL--KDKIQVVKIDT 118 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~--~~~v~~~~vd~ 118 (179)
.+++|+.|+...||+|.++.+.+.++.+++ ++++.++..+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 578899999999999999999999999998 66788887765
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.27 E-value=4.3e-06 Score=50.73 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=40.9
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHH----HhcCCCCCcEEEEEeCCee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~ 144 (179)
|+.|+.+||++|+..+..|++ . ++.+-.+|++.+++.. +..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 577999999999999988832 2 3677777877764333 3349999999875 6654
No 171
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.26 E-value=1.6e-05 Score=63.93 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=72.0
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCCChhhccc------hHHHHHHHHH-hc-CCeEEEEEeCCCchHHHHhcCCC
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYM------APILNEVGAA-LK-DKIQVVKIDTEKYPQIADTYRIE 131 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~------~p~l~~~~~~-~~-~~v~~~~vd~d~~~~l~~~~~v~ 131 (179)
-.+.+++..||++++.+ -+..+|+|+.+-- .-+.. ....-+++++ +. ..+.|+.||...+..+++++|+.
T Consensus 34 DRVi~LneKNfk~~lKk-yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKK-YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHHHH--SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHHHh-hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 45567788999998855 5578888887752 22222 1223344444 33 35999999999999999999999
Q ss_pred CCcEEEEEeCCeeeeEEeCCCCHHHHH-HHHHHHHHHh
Q 030351 132 ALPTFILFKDGKPSDRFVSQFNIVFFV-FLENLICASL 168 (179)
Q Consensus 132 ~~Pt~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~~~ 168 (179)
..+++.+|++|+.+. |.|.+.++.+. ||.++++--+
T Consensus 112 E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 112 EEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHSSSE
T ss_pred ccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhcccch
Confidence 999999999999887 56999999998 8888876544
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.24 E-value=3.8e-06 Score=53.99 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=43.3
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-h----HHHHhcCCCCCcEEEEEeCCee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-P----QIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~----~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
|+.|+++|||+|+.+...|+++.. .+.++.++.+++ . .+.+..++..+|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 577999999999999999988766 366777887765 2 34556788999996 445654
No 173
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.21 E-value=4.6e-06 Score=54.57 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=44.8
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc----hHHHHhcCC--CCCcEEEEEeCCee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRI--EALPTFILFKDGKP 144 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v--~~~Pt~~~~~~G~~ 144 (179)
|+.|..+||++|.+.+..|+++..+..+ +.+..+|++.+ .++.+.++- ..+|++++ +|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE
Confidence 5678999999999999999998766543 66777777643 356666664 78999843 5654
No 174
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.19 E-value=7.3e-06 Score=52.70 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc---hHHHHhcCCCCCcEEEEEeCCeee
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY---PQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
.+.-|+.|+.+||++|++.+..|++. ++.+..+|++++ .++....+...+|.+++ +|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 34457789999999999999999742 366666777665 35555678899999853 66643
No 175
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.17 E-value=2e-05 Score=54.09 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=71.7
Q ss_pred cccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHH---hcCCeEEEEEeCCCchHHHHhcCCCC--CcEEE
Q 030351 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAA---LKDKIQVVKIDTEKYPQIADTYRIEA--LPTFI 137 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~---~~~~v~~~~vd~d~~~~l~~~~~v~~--~Pt~~ 137 (179)
++.+.++...+... +.+..+.|+.+ ..-......+.+++++ +++++.|+.+|.++.....+.||++. +|.+.
T Consensus 2 ~e~t~e~~~~~~~~-~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 2 REITFENAEELTEE-GLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred cccccccHHHHhcC-CCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 45677777766644 44444455522 2335678899999999 99899999999999888999999997 99998
Q ss_pred EEeCCe-eeeE-EeCCCCHHHHH-HHHHHHH
Q 030351 138 LFKDGK-PSDR-FVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 138 ~~~~G~-~~~~-~~G~~~~~~~~-~i~~~i~ 165 (179)
+..... .... ..+..+.+.+. ++++++.
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 885322 2222 45677777776 6766654
No 176
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.14 E-value=2.2e-05 Score=59.72 Aligned_cols=40 Identities=18% Similarity=0.541 Sum_probs=33.2
Q ss_pred CCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEe
Q 030351 78 DKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKID 117 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd 117 (179)
+++.||.|+.-.||+|..+.+.+ +.+.+.+++++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 57889999999999999999976 78888888766665544
No 177
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.13 E-value=1.2e-05 Score=49.79 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=41.3
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHH----HhcCCCCCcEEEEEeCCeeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
++.|+++||++|+..+..|++.. +.+..+|++.+.+.. +..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56799999999999999988664 556677887765433 345777888773 4676544
No 178
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.12 E-value=6.1e-05 Score=53.20 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=67.7
Q ss_pred CCcEEEEEecC--CC-hhh-ccchHHHHHHHHHhcCC-eEEEEEeCCCchHHHHhcCCC--CCcEEEEEeCCeeeeE-Ee
Q 030351 78 DKPVLVDFYAT--WC-GPC-QYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADTYRIE--ALPTFILFKDGKPSDR-FV 149 (179)
Q Consensus 78 ~k~vvv~F~a~--wC-~~C-~~~~p~l~~~~~~~~~~-v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~G~~~~~-~~ 149 (179)
++.-+|.|.-. .| +.+ ......+.+++++++++ +.|+.+|.++...+.+.||+. ++|++++++..+.... +.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~ 99 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLK 99 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCcccccc
Confidence 34556655432 12 223 34577899999999998 999999999999999999996 4999998854332222 66
Q ss_pred CCCCHHHHH-HHHHHHHHHhc
Q 030351 150 SQFNIVFFV-FLENLICASLQ 169 (179)
Q Consensus 150 G~~~~~~~~-~i~~~i~~~~~ 169 (179)
|..+.+.+. |+++.+.+-+.
T Consensus 100 ~~~t~e~i~~Fv~~~l~Gkl~ 120 (130)
T cd02983 100 GSFSEDGINEFLRELSYGRGP 120 (130)
T ss_pred CccCHHHHHHHHHHHHcCCcc
Confidence 888999887 88888776553
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.10 E-value=3.9e-05 Score=66.07 Aligned_cols=76 Identities=14% Similarity=0.293 Sum_probs=63.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
+..-+-.|..+.||+|......+++++...+ ++..-.+|..+.+++.++|++.++|++++ ||+. .+.|..+.+++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~ 191 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAEL 191 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHH
Confidence 4445888999999999999999999999988 58888899999999999999999999966 4543 35688877766
Q ss_pred H
Q 030351 158 V 158 (179)
Q Consensus 158 ~ 158 (179)
.
T Consensus 192 ~ 192 (515)
T TIGR03140 192 L 192 (515)
T ss_pred H
Confidence 3
No 180
>PHA03050 glutaredoxin; Provisional
Probab=98.07 E-value=7e-06 Score=56.13 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=40.3
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC---c----hHHHHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK---Y----PQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~---~----~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
|+.|..+|||+|++.+..|++..-+.+. +.. +|+++ . .++.+..|...+|++ |-+|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~-~~~--i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA-YEI--VDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC-cEE--EECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEE
Confidence 6779999999999999998877543332 434 44443 2 245556788899998 3456544
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.07 E-value=5.5e-06 Score=55.73 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=37.1
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---H----HHHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---Q----IADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~----l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
|+.|..+|||+|++.+..|.+.. +.+..+|+|+++ + +.+..+...+|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 66799999999999999887542 334455555442 2 3333467889997 4556533
No 182
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.03 E-value=2.7e-05 Score=49.07 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=39.3
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhc---CCCCCcEEEE
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY---RIEALPTFIL 138 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~---~v~~~Pt~~~ 138 (179)
..|..++|++|+..+..|++ .++.+-.+|++++++..+.+ |...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 56888999999999999974 24777888888877665554 8889999754
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.96 E-value=9.1e-05 Score=64.37 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=79.3
Q ss_pred hhhHHHHHhcCCCc-EEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE-eCCee
Q 030351 67 FSSLDDLLQKSDKP-VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDGKP 144 (179)
Q Consensus 67 ~~~~~~~~~~~~k~-vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~ 144 (179)
.+++.+.+.+-.++ .++.|+.+.|..|.++...++++++. .+++.+...|...+.++.++|+|...|+|.++ ++|+.
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 34455666554555 57788888999999999999999965 44688888898888999999999999999998 46654
Q ss_pred e-eEEeCCCCHHHHH-HHHHHHHHH
Q 030351 145 S-DRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 145 ~-~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
. .+|.|.....++. +|+.++.-+
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhc
Confidence 3 6899999999998 777666544
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.89 E-value=0.00016 Score=46.73 Aligned_cols=51 Identities=16% Similarity=0.319 Sum_probs=39.6
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHH---HhcCCCCCcEEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA---DTYRIEALPTFIL 138 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~---~~~~v~~~Pt~~~ 138 (179)
+..|..+||++|...+..|++ .++.|-.+|++++++.. ...+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 567889999999999998854 24888888998876543 3457789999854
No 185
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.88 E-value=5.4e-05 Score=48.92 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=56.7
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC--eeeeEEeCCCCHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG--KPSDRFVSQFNIVFFV 158 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G--~~~~~~~G~~~~~~~~ 158 (179)
+++|..+.|.-|......++++..+.+ +.+-.||+++++++..+|+. .+|.+.+-..+ .......+..+.+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 678999999999999999999776654 88999999999999999996 79997655421 1234455777887775
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.84 E-value=5.7e-05 Score=48.27 Aligned_cols=55 Identities=15% Similarity=0.336 Sum_probs=39.2
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHH----hcCCCCCcEEEEEeCCee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD----TYRIEALPTFILFKDGKP 144 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~~~G~~ 144 (179)
|+.|+.+||++|.+.+..|++. ++.+-.+|++.+++..+ ..+...+|++ +-+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 3568899999999999999753 35566667776654443 4578889997 335553
No 187
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.84 E-value=7.2e-05 Score=48.78 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=44.6
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC--CCc------------------------------hHHHHhcC
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--EKY------------------------------PQIADTYR 129 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~--d~~------------------------------~~l~~~~~ 129 (179)
++.|+...|++|..+.+.++++....++++.+..+.. ... ..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866666666655543 221 24456789
Q ss_pred CCCCcEEEEEe
Q 030351 130 IEALPTFILFK 140 (179)
Q Consensus 130 v~~~Pt~~~~~ 140 (179)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999997765
No 188
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.82 E-value=0.00012 Score=46.15 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHH----hcCCC-CCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD----TYRIE-ALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~----~~~v~-~~Pt~~~~~~G~~~ 145 (179)
++.|+.+||++|...+..|++. ++.+..+|++++.+..+ ..+.. .+|++ |-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5678899999999999988762 36677778877654443 45766 89977 3455533
No 189
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.79 E-value=0.00021 Score=49.05 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=62.8
Q ss_pred cChhhHHHHHhcCCCcEEEEEe-cC---CChhhccchHHHHHHHHHhc-CCeEEEEEeCCCchHHHHhcCCCC----CcE
Q 030351 65 QTFSSLDDLLQKSDKPVLVDFY-AT---WCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIADTYRIEA----LPT 135 (179)
Q Consensus 65 ~~~~~~~~~~~~~~k~vvv~F~-a~---wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~~~~l~~~~~v~~----~Pt 135 (179)
.+.++..... ..+.++.|+ .. .-..-......+.+++++++ +++.|+.+|.++.....+.||++. +|+
T Consensus 4 ~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 4 RTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred eccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence 3445554443 334444443 22 22334567889999999999 699999999998888899999984 999
Q ss_pred EEEEeCCeeeeEEeCCC-CHHHHH-HHHH
Q 030351 136 FILFKDGKPSDRFVSQF-NIVFFV-FLEN 162 (179)
Q Consensus 136 ~~~~~~G~~~~~~~G~~-~~~~~~-~i~~ 162 (179)
+.++..........+.. +.+.+. ++++
T Consensus 81 ~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 81 VAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred EEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 99985322222234555 666665 4443
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.75 E-value=0.00019 Score=45.22 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=41.2
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchH----HHHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
++.|+.+||++|++.+..|++. ++.+-.+|++++.+ +.+..+-..+|++ |.+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5678999999999999988862 36677778877654 5555677888988 3445543
No 191
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.72 E-value=0.0002 Score=44.90 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=40.1
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---HHHHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
++.|..+||++|.+.+..|++. ++.+..+|++++. .+....+...+|.+ |-+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 5679999999999998888742 3666667776654 33444688899997 4456543
No 192
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.64 E-value=0.0008 Score=48.84 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=32.0
Q ss_pred CCcEEEEEe-cCCChhhccc-hHHHHHHHHHhcC-Ce-EEEEEeCC
Q 030351 78 DKPVLVDFY-ATWCGPCQYM-APILNEVGAALKD-KI-QVVKIDTE 119 (179)
Q Consensus 78 ~k~vvv~F~-a~wC~~C~~~-~p~l~~~~~~~~~-~v-~~~~vd~d 119 (179)
++++||+|| +.||+.|... .+.|.+.+.++.+ ++ .++.|..|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 555555555 7999999999 9999999998873 35 47777665
No 193
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.62 E-value=0.0011 Score=43.82 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC-eee
Q 030351 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG-KPS 145 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 145 (179)
.+.+++++ ..+++++|-|+..++. .....+.++++.+.+.+.|+.+. +.++.+.+++.. |++++|+.. ...
T Consensus 7 ~~~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~ 78 (97)
T cd02981 7 KEELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEP 78 (97)
T ss_pred HHHHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCC
Confidence 34455544 4577889999999886 57888999999998678887766 456777787765 888888653 444
Q ss_pred eEEeCCCCHHHHH-HH
Q 030351 146 DRFVSQFNIVFFV-FL 160 (179)
Q Consensus 146 ~~~~G~~~~~~~~-~i 160 (179)
..+.|....+.+. ||
T Consensus 79 ~~y~g~~~~~~l~~fi 94 (97)
T cd02981 79 VEYDGEFTEESLVEFI 94 (97)
T ss_pred ccCCCCCCHHHHHHHH
Confidence 5678877766664 44
No 194
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00032 Score=61.16 Aligned_cols=103 Identities=25% Similarity=0.313 Sum_probs=75.2
Q ss_pred cChhhHHHHHhcCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCchHHHHhcC--------CCCC
Q 030351 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYR--------IEAL 133 (179)
Q Consensus 65 ~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~~--------v~~~ 133 (179)
...+.|.+.. ..+||++|-...+||..|..|...= +++++-+..+++-++||-++.+++-+.|. --|+
T Consensus 31 W~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 31 WGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred cCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 3667786655 5589999999999999999998743 67888777789999999999887777663 5689
Q ss_pred cEEEEE-eCCeeeeEEeCCCCHH------HHHHHHHHHHHHhc
Q 030351 134 PTFILF-KDGKPSDRFVSQFNIV------FFVFLENLICASLQ 169 (179)
Q Consensus 134 Pt~~~~-~~G~~~~~~~G~~~~~------~~~~i~~~i~~~~~ 169 (179)
|..+|. .+|+..--.+ +.+.+ .+..+.+.|...|.
T Consensus 110 PLtVfLTPd~kPFfagT-Y~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 110 PLTVFLTPDGKPFFAGT-YFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred ceeEEECCCCceeeeee-ecCCcccCCCcCHHHHHHHHHHHHH
Confidence 998777 8998764221 22222 44445555555555
No 195
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0004 Score=55.24 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=63.8
Q ss_pred ccccChhhHHHHHhcC--CCcEEEEEecC----CChhhccchHHHHHHHHHhcC--------CeEEEEEeCCCchHHHHh
Q 030351 62 AKKQTFSSLDDLLQKS--DKPVLVDFYAT----WCGPCQYMAPILNEVGAALKD--------KIQVVKIDTEKYPQIADT 127 (179)
Q Consensus 62 ~~~~~~~~~~~~~~~~--~k~vvv~F~a~----wC~~C~~~~p~l~~~~~~~~~--------~v~~~~vd~d~~~~l~~~ 127 (179)
+...++++|..++... +=.++|+|.|. .|.-|+.+...+.-+++-+.. ++-|..||.|+.+++.++
T Consensus 42 VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~ 121 (331)
T KOG2603|consen 42 VIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQ 121 (331)
T ss_pred eEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHH
Confidence 4455777888888644 33457777764 599999999999998886542 488999999999999999
Q ss_pred cCCCCCcEEEEE
Q 030351 128 YRIEALPTFILF 139 (179)
Q Consensus 128 ~~v~~~Pt~~~~ 139 (179)
+++..+|++++|
T Consensus 122 l~ln~~P~l~~f 133 (331)
T KOG2603|consen 122 LNLNNVPHLVLF 133 (331)
T ss_pred hcccCCCeEEEe
Confidence 999999999999
No 196
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.56 E-value=0.00017 Score=54.43 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=70.8
Q ss_pred ccChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 64 KQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 64 ~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
..+...|.+.+.+. .-.++|..|-+.-+.|-.+...+.=++.+|+. +.|+++-... ....++|...++||++||++
T Consensus 143 l~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~LliYkg 220 (273)
T KOG3171|consen 143 LETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTLLIYKG 220 (273)
T ss_pred eccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceEEEeeC
Confidence 33677888888765 34568889999999999999999999999995 9999987665 45688999999999999999
Q ss_pred CeeeeEEe
Q 030351 142 GKPSDRFV 149 (179)
Q Consensus 142 G~~~~~~~ 149 (179)
|+.+..|.
T Consensus 221 GeLIgNFv 228 (273)
T KOG3171|consen 221 GELIGNFV 228 (273)
T ss_pred CchhHHHH
Confidence 99987554
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=97.54 E-value=0.00015 Score=46.94 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=39.9
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHH----HHhcCCCCCcEEEEEeCCeee
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
++.|..+||++|++.+..|++. ++.+..+|++++.+. .+..+...+|+++ .+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 5678889999999999988853 355666777766533 4455778899873 356544
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00025 Score=45.71 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=36.1
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-----HHHHhc-CCCCCcEEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----QIADTY-RIEALPTFIL 138 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-----~l~~~~-~v~~~Pt~~~ 138 (179)
++.|..++||+|++.+..|.+ .++.+..++++.+. +..++. |...+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999988882 23566666665544 334444 7899998754
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.49 E-value=0.00047 Score=45.38 Aligned_cols=59 Identities=19% Similarity=0.404 Sum_probs=39.2
Q ss_pred CcEEEEEec----CCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHH----HHhcCCCCCcEEEEEeCCeee
Q 030351 79 KPVLVDFYA----TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 79 k~vvv~F~a----~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
++++|+-.. +||++|+..+..|++.. +.+..+|++++.++ .+..+...+|++ |.+|+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 455554332 79999999998887753 55666677666544 344577889997 3466643
No 200
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.48 E-value=0.0012 Score=50.87 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=49.2
Q ss_pred ccccCCCceeccccChhhHHHHHh--cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC
Q 030351 52 SKRRLLPVVEAKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT 118 (179)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~ 118 (179)
..++..|...+..++.+....+.+ +.++|.||+|.+-.||+=+.-...++++++++.+.+.|+.|-+
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 344455555555555555223332 4589999999999999999999999999999998666766644
No 201
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.45 E-value=0.00093 Score=44.68 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=41.9
Q ss_pred HHHHHhcCCCcEEEEEe----cCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHH----HhcCCCCCcEEEEEeC
Q 030351 70 LDDLLQKSDKPVLVDFY----ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTFILFKD 141 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~----a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~ 141 (179)
.++++. .+.|+|+-. ++|||+|.+.+..|.+. ++.+..+|++++.++. +..|...+|.++ -+
T Consensus 5 v~~~i~--~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~ 74 (97)
T TIGR00365 5 IKEQIK--ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VK 74 (97)
T ss_pred HHHHhc--cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence 344443 234554433 28999999999988764 3566778887765444 345677888873 45
Q ss_pred Ceee
Q 030351 142 GKPS 145 (179)
Q Consensus 142 G~~~ 145 (179)
|+.+
T Consensus 75 g~~i 78 (97)
T TIGR00365 75 GEFV 78 (97)
T ss_pred CEEE
Confidence 6533
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=97.43 E-value=0.0013 Score=45.46 Aligned_cols=68 Identities=18% Similarity=0.359 Sum_probs=40.0
Q ss_pred hHHHHHhcCCCcEEEEEec----CCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHh----cCCCCCcEEEEEe
Q 030351 69 SLDDLLQKSDKPVLVDFYA----TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT----YRIEALPTFILFK 140 (179)
Q Consensus 69 ~~~~~~~~~~k~vvv~F~a----~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~Pt~~~~~ 140 (179)
..++++. ..+|+|+--. +|||+|++....|..+. +.+..+|++++.++... -+...+|.+ |-
T Consensus 7 ~v~~~I~--~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI 76 (115)
T PRK10824 7 KIQRQIA--ENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL--WV 76 (115)
T ss_pred HHHHHHh--cCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EE
Confidence 3445553 2345544333 69999999999887762 34445666666554443 345556654 45
Q ss_pred CCeeee
Q 030351 141 DGKPSD 146 (179)
Q Consensus 141 ~G~~~~ 146 (179)
+|+.++
T Consensus 77 ~G~~IG 82 (115)
T PRK10824 77 DGELVG 82 (115)
T ss_pred CCEEEc
Confidence 676443
No 203
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.32 E-value=0.001 Score=49.31 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=26.4
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~v 116 (179)
+|..|.|+.|-...|.+.++..+++.++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999987666555
No 204
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0026 Score=43.05 Aligned_cols=68 Identities=22% Similarity=0.417 Sum_probs=43.4
Q ss_pred hHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-HHHHh----cCCCCCcEEEEEeCCe
Q 030351 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADT----YRIEALPTFILFKDGK 143 (179)
Q Consensus 69 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~----~~v~~~Pt~~~~~~G~ 143 (179)
.+++++.. ++ +|.|..+||++|..++..|.+ ++....++.+|-+++. ++.+. -+-+.+|.+ |-+|+
T Consensus 6 ~v~~~i~~--~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk 76 (104)
T KOG1752|consen 6 KVRKMISE--NP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGK 76 (104)
T ss_pred HHHHHhhc--CC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCE
Confidence 34555533 23 556999999999998887777 4445667777776543 33333 345578876 44665
Q ss_pred ee
Q 030351 144 PS 145 (179)
Q Consensus 144 ~~ 145 (179)
-+
T Consensus 77 ~i 78 (104)
T KOG1752|consen 77 FI 78 (104)
T ss_pred EE
Confidence 44
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=96.94 E-value=0.005 Score=46.80 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHhcCCCcEEEEEe----cCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHh----cCCCCCcEEEEEeC
Q 030351 70 LDDLLQKSDKPVLVDFY----ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT----YRIEALPTFILFKD 141 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~----a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~Pt~~~~~~ 141 (179)
+++++. .++++|+-- .+||++|++....|++. ++.+..+|++++.++.+. .+...+|.++ -+
T Consensus 106 v~~li~--~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~ 175 (204)
T PTZ00062 106 IERLIR--NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VN 175 (204)
T ss_pred HHHHHh--cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--EC
Confidence 444442 345554433 26999999998888753 366777888777655443 3555667663 45
Q ss_pred Ceee
Q 030351 142 GKPS 145 (179)
Q Consensus 142 G~~~ 145 (179)
|+.+
T Consensus 176 G~~I 179 (204)
T PTZ00062 176 GELI 179 (204)
T ss_pred CEEE
Confidence 6543
No 206
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.90 E-value=0.014 Score=43.18 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.9
Q ss_pred EEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEE
Q 030351 81 VLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKI 116 (179)
Q Consensus 81 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~v 116 (179)
.|.+|+..-||+|-...+.+.++.+++++ .+.+.-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 36789999999999999999999999943 3444444
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.89 E-value=0.048 Score=37.87 Aligned_cols=95 Identities=21% Similarity=0.359 Sum_probs=63.2
Q ss_pred ccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHH-HHhc--CCeEEEEEeCC-----CchHHHHhcCCC--CC
Q 030351 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVG-AALK--DKIQVVKIDTE-----KYPQIADTYRIE--AL 133 (179)
Q Consensus 64 ~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~-~~~~--~~v~~~~vd~d-----~~~~l~~~~~v~--~~ 133 (179)
.++.-+|++++.+ -+.++|.|=... +--+-...+.+++ +... +.+.+..|.+. +|.+|.++|+|. .+
T Consensus 8 ~LD~~tFdKvi~k-f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 8 PLDELTFDKVIPK-FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp EESTTHHHHHGGG-SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred eccceehhheecc-CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 3455678888866 479999996532 2224456788888 4333 35888888764 578999999994 68
Q ss_pred cEEEEEe-CCeeeeEE--eCCCCHHHHH-HHH
Q 030351 134 PTFILFK-DGKPSDRF--VSQFNIVFFV-FLE 161 (179)
Q Consensus 134 Pt~~~~~-~G~~~~~~--~G~~~~~~~~-~i~ 161 (179)
|.+.+|. +.+...++ .|....+.++ |+.
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHH
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHH
Confidence 9999995 55566777 7778887775 443
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.88 E-value=0.0031 Score=52.92 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=39.6
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchH---HHHh---------cCCCCCcEEEEEeCCe
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ---IADT---------YRIEALPTFILFKDGK 143 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~---l~~~---------~~v~~~Pt~~~~~~G~ 143 (179)
|+.|..+|||+|++.+..|.+. ++.+-.+|+++++. +.++ .|...+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6679999999999999888763 37777788886653 2222 46788999855 454
No 209
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.81 E-value=0.0033 Score=47.15 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=67.8
Q ss_pred eeccccChhhHHHHHhcC--CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 60 VEAKKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
..+..++..++.+-+.+. +-.|||..|...=+.|.-+...|+.++.+|+. +.|+.+-.... ...|--...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeEE
Confidence 344455666666666543 66788899999999999999999999999996 88887754432 2235556789999
Q ss_pred EEeCCeeeeEEeCCCC
Q 030351 138 LFKDGKPSDRFVSQFN 153 (179)
Q Consensus 138 ~~~~G~~~~~~~G~~~ 153 (179)
+|..|.+.+.+.|...
T Consensus 167 VY~~G~lk~q~igll~ 182 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLE 182 (240)
T ss_pred EeecchHHhheehhhh
Confidence 9999988877776543
No 210
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.016 Score=41.83 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred HhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCCc-----------hHHHH-hcCCC---------
Q 030351 74 LQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY-----------PQIAD-TYRIE--------- 131 (179)
Q Consensus 74 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~-----------~~l~~-~~~v~--------- 131 (179)
-..+||+++|.=.|+-|+.-- ...-|+.++++|++ ++.++..-|++- .++|+ .|||+
T Consensus 21 ~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~V 99 (162)
T COG0386 21 SDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDV 99 (162)
T ss_pred HHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEee
Confidence 345699999999999998865 45567888888885 477887766531 12222 12211
Q ss_pred ---------------------------CCcEEEEEeCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 132 ---------------------------ALPTFILFKDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 132 ---------------------------~~Pt~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
.+=-|++.++|+.++|+.-....+++. .|++++.
T Consensus 100 nG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 100 NGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred cCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 111366668999999998888888876 6666553
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.42 E-value=0.035 Score=40.62 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCC-eeeeEEeCC-CCHHHHH-HHHHH
Q 030351 95 YMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG-KPSDRFVSQ-FNIVFFV-FLENL 163 (179)
Q Consensus 95 ~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~-~~~~~~~-~i~~~ 163 (179)
.+...+.++++.+.+.+.|+.+. +.++++++++.. |++++|+.+ +....+.|. .+.+.+. ||...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 34568899999999889998887 577999999999 999999764 445667887 6777776 66644
No 212
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.37 E-value=0.036 Score=37.15 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=67.4
Q ss_pred ccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC--chHHHHhcCCC----CCcE-E
Q 030351 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--YPQIADTYRIE----ALPT-F 136 (179)
Q Consensus 64 ~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~----~~Pt-~ 136 (179)
..+..+|.+++...+ .|+|.|..+-- .-......+.++++..++.-.+..|||.+ .+.||+++.|. --|. +
T Consensus 6 i~d~KdfKKLLRTr~-NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 6 ISDHKDFKKLLRTRN-NVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred ccchHHHHHHHhhcC-cEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 345678888886544 56666665432 22344558889999999888888999986 68999999999 5665 5
Q ss_pred EEEeCCeeeeEEeCCCCHHHHH
Q 030351 137 ILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 137 ~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
.-|++|.-...+....+..-+.
T Consensus 84 kHYKdG~fHkdYdR~~t~kSmv 105 (112)
T cd03067 84 KHYKDGDFHTEYNRQLTFKSMV 105 (112)
T ss_pred hcccCCCccccccchhhHHHHH
Confidence 5679998777777666666555
No 213
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.32 E-value=0.049 Score=41.49 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=68.8
Q ss_pred ceeccccChhhHHHHHhcCCCcEEEEEecCCCh-hhccchHHHHHHHHHhc-C---C--eEEEEEeCCCc----------
Q 030351 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCG-PCQYMAPILNEVGAALK-D---K--IQVVKIDTEKY---------- 121 (179)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~-~C~~~~p~l~~~~~~~~-~---~--v~~~~vd~d~~---------- 121 (179)
.+++.+.+.+.|...- ..|++++|+|.=+.|| .|-.+...+.++.+++. + . +.++.||-+.+
T Consensus 49 ~f~l~d~~G~~~~~~~-l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKD-LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeeccc-cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4677777777665333 3589999999988886 58888888888888777 2 2 55566655421
Q ss_pred -----------------hHHHHhcCCCC---------------CcEEEEE-eCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 122 -----------------PQIADTYRIEA---------------LPTFILF-KDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 122 -----------------~~l~~~~~v~~---------------~Pt~~~~-~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
.++++.|+|.. ...++++ .+|+....+.+..+.+.+. .+.++++
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 14445555542 2234444 6999998887777655554 5555543
No 214
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.17 E-value=0.092 Score=34.84 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=55.1
Q ss_pred hhHHHHHhcCCCcEEE-EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee-e
Q 030351 68 SSLDDLLQKSDKPVLV-DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP-S 145 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv-~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~-~ 145 (179)
+++.....+-.++|.+ .|..+. ..|..+...++++++.-. ++.+...+.++ ..|++.+..+|+. -
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCccc
Confidence 3455555444556644 555555 999999999999998755 46554333322 4699999877743 2
Q ss_pred eEEeCCCCHHHHH-HHHH
Q 030351 146 DRFVSQFNIVFFV-FLEN 162 (179)
Q Consensus 146 ~~~~G~~~~~~~~-~i~~ 162 (179)
.||.|.....++. ++..
T Consensus 75 IrF~GiP~GhEf~Slila 92 (94)
T cd02974 75 IRFAGIPMGHEFTSLVLA 92 (94)
T ss_pred EEEEecCCchhHHHHHHH
Confidence 6899999888887 5543
No 215
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.033 Score=40.77 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=61.9
Q ss_pred ccccCCCceeccccChhhHHHHHhcCCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC---------
Q 030351 52 SKRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------- 120 (179)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~--------- 120 (179)
..+...|.+.+.+.+.+.+.--.-.+++++|++|| +..-|.|.+...-|+.-++++++ ...++.+..|.
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~s 143 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFAS 143 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhh
Confidence 45566777888877776653211233568888888 46678888888888777777764 46667776553
Q ss_pred ------------chHHHHhcCCCCCc--------EEEEEeCCeee
Q 030351 121 ------------YPQIADTYRIEALP--------TFILFKDGKPS 145 (179)
Q Consensus 121 ------------~~~l~~~~~v~~~P--------t~~~~~~G~~~ 145 (179)
-.++...+|+.+.| +++|.++|...
T Consensus 144 KqnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~ 188 (211)
T KOG0855|consen 144 KQNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQ 188 (211)
T ss_pred hccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEE
Confidence 34677778887655 45555665443
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.058 Score=41.72 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD 109 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~ 109 (179)
++.+++.|....|++|++..+.+++.....++
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 36788888888899998888888776665554
No 217
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.062 Score=40.26 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=53.0
Q ss_pred CCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chHHHHh
Q 030351 78 DKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----------------------------YPQIADT 127 (179)
Q Consensus 78 ~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~~ 127 (179)
+|.+|++|| ++.-+.|-.+...+.+.+.++.+ ++.++.+.+|. +.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 577787787 57889999999999999999886 48888888763 3477888
Q ss_pred cCCCCCc-------EEEEEeCCeeeeEE
Q 030351 128 YRIEALP-------TFILFKDGKPSDRF 148 (179)
Q Consensus 128 ~~v~~~P-------t~~~~~~G~~~~~~ 148 (179)
||+-.-. +|++..+|.+....
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~ 140 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHIL 140 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEE
Confidence 8876322 35555888876533
No 218
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=95.81 E-value=0.052 Score=40.11 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=45.9
Q ss_pred cccCCCceeccccChhhHHHHHhcCCCcEEEEEecCCC-hhhccchHHHHHHHHHhcC---CeEEEEEeCC
Q 030351 53 KRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWC-GPCQYMAPILNEVGAALKD---KIQVVKIDTE 119 (179)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC-~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d 119 (179)
.....+.+.+.+.+.+.+.. ..-.||+++|.|.-+.| ..|-.....+.++.++++. ++.++.|.+|
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TSCSSST-EEEETTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCccCCCcEEEcCCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 45566778888877776652 23458999999999999 4688888877777776652 4777777665
No 219
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.75 E-value=0.1 Score=45.13 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=63.0
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee-
Q 030351 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS- 145 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~- 145 (179)
.+++.+++.+-.++|-+.++.+.|..|.++...++++++.-. ++.+...+.+ ...|++.+.++|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccce
Confidence 345556665556677666666689999999999999999765 4655332211 247999888777654
Q ss_pred eEEeCCCCHHHHH-HHHHHHHH
Q 030351 146 DRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 146 ~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
-+|.|.....++. +|+.++.-
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~ 96 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQV 96 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHh
Confidence 6899999999998 77766543
No 220
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.52 E-value=0.088 Score=41.15 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=59.5
Q ss_pred CCcEEEEEecCCChh-hccchHHHHHHHHHhcCC------eEEEEEeCCCc--------------------------hHH
Q 030351 78 DKPVLVDFYATWCGP-CQYMAPILNEVGAALKDK------IQVVKIDTEKY--------------------------PQI 124 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~-C~~~~p~l~~~~~~~~~~------v~~~~vd~d~~--------------------------~~l 124 (179)
||.++++|.-+.||. |-++...+-++..+...+ -.|+.||-+.+ ..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 899999999999985 777777666666655432 25777776432 256
Q ss_pred HHhcCCCCC--c-----------EEEEE---eCCeeeeEEeCCCCHHHHH-HHHHHHHH
Q 030351 125 ADTYRIEAL--P-----------TFILF---KDGKPSDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 125 ~~~~~v~~~--P-----------t~~~~---~~G~~~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
|++|.|.-- | ++++| .+|+-++.+---.+++++. .|...+.+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 666666522 2 33333 5888888765567788876 77777654
No 221
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.50 E-value=0.15 Score=44.11 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=63.8
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee-
Q 030351 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS- 145 (179)
Q Consensus 67 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~- 145 (179)
.+++.+++.+-.++|.+.++.+.|..|.++...++++++.-. ++.+...+.++ ...|++.+.++|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccc
Confidence 345556665556677666665579999999999999998765 46664444332 345999888877643
Q ss_pred eEEeCCCCHHHHH-HHHHHHHHH
Q 030351 146 DRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 146 ~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
-+|.|.....++. +++.++.-+
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~ 98 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVG 98 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhc
Confidence 6899999999998 777665544
No 222
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.10 E-value=0.077 Score=38.23 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=45.7
Q ss_pred EEEEecC------CChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHH----HHhcCC----CCCcEEEEEeCCeeeeE
Q 030351 82 LVDFYAT------WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRI----EALPTFILFKDGKPSDR 147 (179)
Q Consensus 82 vv~F~a~------wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l----~~~~~v----~~~Pt~~~~~~G~~~~~ 147 (179)
|+.|.++ +|++|+..+..|+.+ +|.+..+|++.+.++ .+.++. ..+|.++ -+|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~IG- 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYLG- 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEEe-
Confidence 4556667 999999999888764 367778888776544 344454 5678764 3454333
Q ss_pred EeCCCCHHHHH---HHHHHHHHH
Q 030351 148 FVSQFNIVFFV---FLENLICAS 167 (179)
Q Consensus 148 ~~G~~~~~~~~---~i~~~i~~~ 167 (179)
|..+...+. .+.++++..
T Consensus 73 --G~del~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 73 --GAEEVLRLNESGELRKLLKGI 93 (147)
T ss_pred --cHHHHHHHHHcCCHHHHHhhc
Confidence 333333332 456666554
No 223
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.96 E-value=0.66 Score=30.89 Aligned_cols=89 Identities=10% Similarity=0.128 Sum_probs=57.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC-Cee
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD-GKP 144 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~-G~~ 144 (179)
+.+++++++...+..++|-|+..--. .....+.+++..+.+...|+... +.++...+++. .|.++++++ ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 45667777751455667767755322 45678899999986667775433 23567778775 688888854 444
Q ss_pred eeEE-eCCCCHHHHH-HHH
Q 030351 145 SDRF-VSQFNIVFFV-FLE 161 (179)
Q Consensus 145 ~~~~-~G~~~~~~~~-~i~ 161 (179)
...+ .|..+.+.+. ||.
T Consensus 80 ~~~y~~g~~~~~~l~~fi~ 98 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVE 98 (102)
T ss_pred CcccCCCCCCHHHHHHHHH
Confidence 4456 6666776665 443
No 224
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.30 E-value=1.3 Score=31.43 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=59.6
Q ss_pred cCCCcEEEEEecCCChhhccchHHH---HHHHHHhcCCeEEEEEeCCCch------------------HHHHhcCCCCCc
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYP------------------QIADTYRIEALP 134 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~------------------~l~~~~~v~~~P 134 (179)
+..|+.+|+...+.-..+..+-..+ +.+.+-+..++.+...|+.... ...+.++...+|
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 3479999999988764443333322 4445555557888888876532 234567899999
Q ss_pred EEEEE-eCC---eeeeEEeCCCCHHHHH-HHHHHH
Q 030351 135 TFILF-KDG---KPSDRFVSQFNIVFFV-FLENLI 164 (179)
Q Consensus 135 t~~~~-~~G---~~~~~~~G~~~~~~~~-~i~~~i 164 (179)
.+.++ +.. .++.++.|..+.+++. .+.+.+
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 98777 433 4668999999988886 555444
No 225
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.05 E-value=0.19 Score=31.67 Aligned_cols=58 Identities=26% Similarity=0.253 Sum_probs=47.4
Q ss_pred EEEEEecCCChhhccchHHHHHHHHHhc-CCeEEEEEeCCCchHHHHhcCCCCCcEEEE
Q 030351 81 VLVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 81 vvv~F~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 138 (179)
.+..|-+...+........+.++.+++. +.+.+=.||+.+++++++.++|-.+||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 3455666666888888888888888764 568888899999999999999999999753
No 226
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.99 E-value=0.21 Score=30.79 Aligned_cols=57 Identities=9% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-chHHHHhcCCCCCcEEEEEeCCee
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-YPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
+.|+.+||++|++.+-.+++..- .+.+..+|... ..++.+......+|++. ..+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~-~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV-LGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE-ECCCcE
Confidence 35788999999988766654432 25555666543 34666666777899984 334543
No 227
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.60 E-value=0.028 Score=44.92 Aligned_cols=86 Identities=15% Similarity=0.369 Sum_probs=61.0
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
...+-+.||+.||+.-+..+|.++-....++..-++..-+...-+....+|++.+.|++.+.. -.-..++.|..+-..+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN-QTCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec-cccchhhcccccHHHH
Confidence 467888999999999999999998888888742233311222345778899999999986553 3444566788777777
Q ss_pred H-HHHHHH
Q 030351 158 V-FLENLI 164 (179)
Q Consensus 158 ~-~i~~~i 164 (179)
. +..+.+
T Consensus 155 v~fy~~i~ 162 (319)
T KOG2640|consen 155 VNFYTEIT 162 (319)
T ss_pred HHHHHhhc
Confidence 6 444443
No 228
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.51 E-value=1.2 Score=34.33 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=28.7
Q ss_pred HHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH-HHHHHHHHHhc
Q 030351 125 ADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV-FLENLICASLQ 169 (179)
Q Consensus 125 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~~~~ 169 (179)
+++.||+++|+|+| +|+. .+.|.++.+.+. .|++.+...-+
T Consensus 177 A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 177 AQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcccc
Confidence 34679999999988 3332 356999999986 56666554433
No 229
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.67 Score=33.93 Aligned_cols=59 Identities=25% Similarity=0.246 Sum_probs=43.5
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE 119 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d 119 (179)
+.+++++.+.+ .+-...||+++|.=-|+.|+.-..-...|..+.++|++ ++.++..-|.
T Consensus 17 f~~~d~~G~~v-~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 17 FSAKDLDGEYV-SLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred eEEecCCCCCc-cHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 44455555333 33445699999999999999998778899999999985 4777777664
No 230
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=93.31 E-value=1 Score=37.79 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=59.0
Q ss_pred cCCCcEEEEEecCCChhhccchH--HHHHHHHH-hcCCeEEEEEeCCC--chHHHHhcCCCCCcEEEEE-eCCeeeeEEe
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAP--ILNEVGAA-LKDKIQVVKIDTEK--YPQIADTYRIEALPTFILF-KDGKPSDRFV 149 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p--~l~~~~~~-~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~ 149 (179)
+.++.++|.|-+..-.....|.. .......+ +-..++.++|+... ...+..-|-+..+|.++|+ +.|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 34567777777766666666662 22333333 32335556665543 3467778899999998888 8999999999
Q ss_pred CCCCHHHHH-HHHH
Q 030351 150 SQFNIVFFV-FLEN 162 (179)
Q Consensus 150 G~~~~~~~~-~i~~ 162 (179)
|...++++. .|++
T Consensus 96 g~v~adeL~~~i~K 109 (506)
T KOG2507|consen 96 GFVTADELASSIEK 109 (506)
T ss_pred ccccHHHHHHHHHH
Confidence 999988886 4544
No 231
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.25 E-value=1.7 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.279 Sum_probs=55.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEe-----
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK----- 140 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~----- 140 (179)
+.+++++++. ..+.+||-|+..--. .+...+.++++.+.+.+.|+.... .++.+.+++ .|++++|+
T Consensus 7 s~~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEEEechhhh
Confidence 4556666664 466777777765332 467888899999976677855442 466788888 67777772
Q ss_pred -CC-eeeeEEeCCCCHHHHH-HHH
Q 030351 141 -DG-KPSDRFVSQFNIVFFV-FLE 161 (179)
Q Consensus 141 -~G-~~~~~~~G~~~~~~~~-~i~ 161 (179)
+- .....+.|..+.+.+. ||.
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~ 101 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIR 101 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHH
Confidence 11 1223467776666664 444
No 232
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.89 E-value=0.52 Score=30.78 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=57.5
Q ss_pred cEEEEEecCCChhhccchHHHHHHHHHh-cCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCH
Q 030351 80 PVLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNI 154 (179)
Q Consensus 80 ~vvv~F~a~wC~~C~~~~p~l~~~~~~~-~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 154 (179)
.++=.|.+..-+..+.....+.++.+++ ++.+.+=.+|+.+++++++.++|-.+||++-. .-....|+.|..+.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdls~ 78 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeeccccc
Confidence 4555677888889999999998887754 45577777899999999999999999996433 34556778887754
No 233
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=92.86 E-value=0.42 Score=37.45 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=39.0
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCC-CCCcEEEEE
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRI-EALPTFILF 139 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~ 139 (179)
..||+.+++..+.|||+|-..+=.|-....+++. +.+.....|. .+. ..+|++.|.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEe
Confidence 5689999999999999999887777666677775 4333222222 222 367887665
No 234
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.71 E-value=0.53 Score=31.67 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHh-cCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIV 155 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~-~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~ 155 (179)
+..++=.|.+..-+..+.....+.++.+++ ++.+.+=.||+.+++++++.++|-.+||++-. .-..+.|+.|..+..
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeecccccH
Confidence 456666778888899999999998887754 45577777899999999999999999996433 345667888877543
No 235
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.11 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=36.4
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc--------------h--HHHHhcCCCCCcEEEEEeCCeee
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY--------------P--QIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~--------------~--~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+.|++.-||.|..+..+|+++--+| -.|++.+. + +-.+..|--|+|.+ +..+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcEE
Confidence 5799999999988888777664443 33443321 1 22345677789998 45666654
No 236
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.47 E-value=0.4 Score=29.41 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=31.6
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCe
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
.++.++|++|++.+-.+....- .+..+.++.+......+..+-..+|+++ +.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~-~~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILE-KDDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEE-eCCCe
Confidence 5678999999987766654322 1334444544333334444556788874 34454
No 237
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=90.95 E-value=3.7 Score=27.99 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=55.1
Q ss_pred ccChhhHHHHHhc-CCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHHH----hcCCC-CCcE
Q 030351 64 KQTFSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIAD----TYRIE-ALPT 135 (179)
Q Consensus 64 ~~~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~----~~~v~-~~Pt 135 (179)
.++.++.-++-.. .+...++.|--+--+.-.+|.+.++++|+++.. ++.|+.||-|+-+-+.. .|+|. .-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 3444454444432 245677888888999999999999999999885 49999999999875543 45665 2488
Q ss_pred EEEE
Q 030351 136 FILF 139 (179)
Q Consensus 136 ~~~~ 139 (179)
+-+.
T Consensus 85 IGVV 88 (120)
T cd03074 85 IGVV 88 (120)
T ss_pred eeeE
Confidence 6655
No 238
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.79 E-value=0.5 Score=29.64 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=31.6
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc----hHHHHhcCCCCCcEEEEEeCC
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFKDG 142 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~G 142 (179)
..|+.++|++|++.+-.+++.. +.+-.++++.. .++.+.-....+|+++.-.+|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 60 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG 60 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC
Confidence 4577789999998876665542 32323444332 344444456688998433344
No 239
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=90.71 E-value=2.6 Score=32.69 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC----CeEEEEEeCC
Q 030351 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD----KIQVVKIDTE 119 (179)
Q Consensus 73 ~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----~v~~~~vd~d 119 (179)
+....|+++||-+-..+|..|..-...|+.|..++.. +|.|+.||--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3345589999999999999999999999888877663 4889888854
No 240
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.65 E-value=0.34 Score=33.23 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=26.1
Q ss_pred CcEEEEEecCCChhhccchHHHHHHHHHhc
Q 030351 79 KPVLVDFYATWCGPCQYMAPILNEVGAALK 108 (179)
Q Consensus 79 k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~ 108 (179)
|.++|.|..|-|+-|......++++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999977777764
No 241
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.21 E-value=0.57 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
+..|+.+.|++|++.+-.+.+..-. +.+..+|.....++ +.-+...+|+++.-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 3467889999999998666544222 33333333222333 34456689998655
No 242
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=90.10 E-value=0.97 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=33.3
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch--HHHHhcCCCCCcEEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP--QIADTYRIEALPTFIL 138 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~--~l~~~~~v~~~Pt~~~ 138 (179)
.|+.++|+.|.+.+-.++...- .+....++.++.. ++.+......+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778999999988777765522 2445555544332 3566677778998754
No 243
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.97 E-value=0.3 Score=32.75 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=32.4
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc----hHHHHhcCCCCCcEEEEE-eCCe
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILF-KDGK 143 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~-~~G~ 143 (179)
..|+.++|+.|++....|++. ++.+-.+|+.++ .++.+-.+-.+.+.--++ ++|.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~ 61 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGT 61 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCc
Confidence 468899999999998777663 345555665442 344444444444433333 3443
No 244
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=89.60 E-value=1.6 Score=29.91 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeC
Q 030351 95 YMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (179)
Q Consensus 95 ~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (179)
.+.++...+.+-..+.-.. .++.=++.+.++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 6667666666555432111 22222578999999999999998877
No 245
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=88.82 E-value=0.69 Score=31.71 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP 122 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~ 122 (179)
..|+.++|+.|++....|++- ++.+..+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 368899999999999888762 3666677776543
No 246
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=88.36 E-value=7 Score=27.52 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=50.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhh-ccchHHHHHHHHHhcCCeEEEEEeCCCchHHHH---hcC---CCCCcEEEE
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPC-QYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD---TYR---IEALPTFIL 138 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C-~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~---~~~---v~~~Pt~~~ 138 (179)
+.++.++.+.+....++| +--+-|+=- -..+|........-+.-=+++.|=...+.+... .|= -.+-|.+.+
T Consensus 23 T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~AL 101 (136)
T PF06491_consen 23 TAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPSIAL 101 (136)
T ss_dssp SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---SSEEEE
T ss_pred CHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCchhee
Confidence 567778888744444544 444556421 234565544333211123445554444443322 232 225678999
Q ss_pred EeCCeeeeEEeCC-CCHHHHHHHHHHHHHHhcccc
Q 030351 139 FKDGKPSDRFVSQ-FNIVFFVFLENLICASLQNHC 172 (179)
Q Consensus 139 ~~~G~~~~~~~G~-~~~~~~~~i~~~i~~~~~~~~ 172 (179)
||+|+.+.-+... +.......|.+.|..+...+|
T Consensus 102 fKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~C 136 (136)
T PF06491_consen 102 FKDGELVHFIERHHIEGRPAEEIAENLQDAFDEYC 136 (136)
T ss_dssp EETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH-
T ss_pred eeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhhC
Confidence 9999998754432 122222344666666666665
No 247
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=88.14 E-value=3.5 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=28.3
Q ss_pred chHHHHhcCCCCCcEEEEEeCCe-----------eeeEEeCCCCHHH
Q 030351 121 YPQIADTYRIEALPTFILFKDGK-----------PSDRFVSQFNIVF 156 (179)
Q Consensus 121 ~~~l~~~~~v~~~Pt~~~~~~G~-----------~~~~~~G~~~~~~ 156 (179)
++.+.++|+|+.+|+|++.+++. ...+..|-.+-+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ 106 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKG 106 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHH
Confidence 57899999999999999998774 3456777766444
No 248
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.09 E-value=6 Score=28.21 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred cEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCC----CcEEEEEeCCeeeeEEeCCCCHH
Q 030351 80 PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA----LPTFILFKDGKPSDRFVSQFNIV 155 (179)
Q Consensus 80 ~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~----~Pt~~~~~~G~~~~~~~G~~~~~ 155 (179)
.-++.|+.|.|+=|..-...++ . ..+.+-.+..++-..+.++++|.- =-|. .-+|. .+.|-.+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~-~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~--VI~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----A-NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA--VINGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----h-CCcEEEEeecCcHHHHHHhcCCChhhccccEE--EEcCE---EEeccCCHH
Confidence 3477899999999987666555 1 247777788888888888888862 2233 23554 455889998
Q ss_pred HHHHHH
Q 030351 156 FFVFLE 161 (179)
Q Consensus 156 ~~~~i~ 161 (179)
.+..+.
T Consensus 95 aI~~ll 100 (149)
T COG3019 95 AIARLL 100 (149)
T ss_pred HHHHHH
Confidence 886443
No 249
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.09 E-value=0.88 Score=27.67 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=34.2
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC----CchHHHHhcCCCCCcEEEE
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE----KYPQIADTYRIEALPTFIL 138 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~~ 138 (179)
..|+.++|++|++.+-.++...-. +....++.. ...++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999998887665322 334445542 2345666666778999854
No 250
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.17 E-value=0.75 Score=31.28 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=33.8
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch----HHHHhcCCCCCcEEEEE-eCCe
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP----QIADTYRIEALPTFILF-KDGK 143 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~----~l~~~~~v~~~Pt~~~~-~~G~ 143 (179)
..|+.++|+.|++....|++- ++.|-.+|+.+++ ++..-++..+.|.--++ +.|+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence 468889999999998877662 3556666665432 33443444455654444 4444
No 251
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=86.82 E-value=1.3 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=26.0
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCe
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKI 111 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v 111 (179)
|.+|+.+.||+|-...+.++++.++++.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 667889999999999999999999985333
No 252
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=86.48 E-value=14 Score=28.99 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=39.8
Q ss_pred HHHhcCCCcEEEEEecCC------ChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHh----cCCCCC
Q 030351 72 DLLQKSDKPVLVDFYATW------CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT----YRIEAL 133 (179)
Q Consensus 72 ~~~~~~~k~vvv~F~a~w------C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~ 133 (179)
+++..-+++|-|.+|.+- -..=+.....|+++++.-++++.+-.+|.+.+++..++ +||...
T Consensus 18 ~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 18 KVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPV 89 (271)
T ss_pred HHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCcc
Confidence 344444667767666554 33444455556666666555799999999877766655 887763
No 253
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=86.27 E-value=0.88 Score=30.75 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=40.0
Q ss_pred EecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCC--CCcEEEE-EeCCe
Q 030351 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFIL-FKDGK 143 (179)
Q Consensus 85 F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~-~~~G~ 143 (179)
||..+|+.|......+.+.. -.+.+.|+.+..+...++.+.+++. ..-..+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 79999999999999888872 2335777766555556667778776 3444333 57776
No 254
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=85.97 E-value=3.6 Score=25.44 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=37.5
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-hHHHHhcCCCCCcEEEEEeCCeee
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
.++.++|++|++.+-.++...- .+.+..++..+. .++.+...-..+|++. .+|..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 3678999999988765543322 255666665553 5666777777899996 557644
No 255
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=1.8 Score=32.69 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=30.8
Q ss_pred hHHHHhcCCCCCcEEEEEeCCeeeeEEeC--CCCHHHHH-HHHHHH
Q 030351 122 PQIADTYRIEALPTFILFKDGKPSDRFVS--QFNIVFFV-FLENLI 164 (179)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G--~~~~~~~~-~i~~~i 164 (179)
..+++++++.++||+++-+||+...--.| ....+.+. .+++.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 46788999999999999999987765556 33444443 555544
No 256
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.31 E-value=1.2 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.4
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~ 120 (179)
+..|+.++|+.|++....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccC
Confidence 4568889999999988766543 24455555543
No 257
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=85.05 E-value=1.6 Score=29.65 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=37.8
Q ss_pred cCCCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCCC
Q 030351 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK 120 (179)
Q Consensus 76 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~ 120 (179)
.+||+++|.=.|+.|+.-. ....|+++.++|++ ++.++..-+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4589999999999999988 77899999999984 58888887764
No 258
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.55 E-value=2.2 Score=26.02 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC----chHHHHhcCCCCCcEEE
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFI 137 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~ 137 (179)
..|+.++|+.|++.+-.+++..-. +....+|..+ ..++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357889999999777766654322 4455555432 25666666677899995
No 259
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=84.37 E-value=2.3 Score=35.00 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=36.3
Q ss_pred ChhhccchH----HHHHHHHHhcC---CeEEEEEeCC--C-chHHHHhcCCCCCcE-EEEEeCCeeeeEEeCC
Q 030351 90 CGPCQYMAP----ILNEVGAALKD---KIQVVKIDTE--K-YPQIADTYRIEALPT-FILFKDGKPSDRFVSQ 151 (179)
Q Consensus 90 C~~C~~~~p----~l~~~~~~~~~---~v~~~~vd~d--~-~~~l~~~~~v~~~Pt-~~~~~~G~~~~~~~G~ 151 (179)
||.|.+-.- ...++.+++.+ .+.+...-|- . -+.-..++||.+-+. .++|++|+.+.++.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~ 343 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEE 343 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChH
Confidence 444544433 33555555554 2444444442 1 134467788887655 8888999999887554
No 260
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=83.74 E-value=0.31 Score=31.48 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=42.8
Q ss_pred EecCCChhhccchHHHHHHHHHh-cCCeEEEEEeCCCchHHHHhcCCCCCcEEE
Q 030351 85 FYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (179)
Q Consensus 85 F~a~wC~~C~~~~p~l~~~~~~~-~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 137 (179)
|-+..-+........++.+.+.+ ++.+.+=.||+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44555566677788888888874 456888889999999999999999999974
No 261
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=82.94 E-value=3.1 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=34.3
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-hHHHHhcCCCCCcEEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFIL 138 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~~ 138 (179)
+..|+.+.|++|++.+-.++...- .+.+..++.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 445778889999988766655322 245555665443 34666666778999864
No 262
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.38 E-value=1.6 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=24.6
Q ss_pred hHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 122 PQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
.....+.||.|+|||++ +|+. .+.|..+.+.+.
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~ 197 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFL 197 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHH
Confidence 35567789999999977 4442 367888888775
No 263
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=81.85 E-value=2 Score=26.10 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=32.2
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-hHHHHhcCCCCCcEEE
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFI 137 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~ 137 (179)
..|+.++|+.|++.+-.+++..-. +....+|.... .++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457789999999988776544322 33444554433 4555556666899773
No 264
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.64 E-value=1.1 Score=30.29 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=22.4
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~ 120 (179)
..|+.++|..|++.+..|++- ++.+-.+|..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEeccc
Confidence 468889999999988777654 24455555544
No 265
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=78.76 E-value=4.6 Score=35.30 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=54.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHH-H--HHHHHHhcCCeEEEEEeCCCchHHHH--------hcCCCCCc
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTEKYPQIAD--------TYRIEALP 134 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~--------~~~v~~~P 134 (179)
..+.|++.. .++|++++-..-+.|..|..|... | ++.++.+.++++-++||-++.+++-+ ..|--|+|
T Consensus 101 gqeaf~kar-~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNKAR-AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHHHH-hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 446676665 558899999999999999988763 3 45666666667777888888776554 34677888
Q ss_pred EEEEE-eCCe
Q 030351 135 TFILF-KDGK 143 (179)
Q Consensus 135 t~~~~-~~G~ 143 (179)
.-++. .+=+
T Consensus 180 msV~LTPdL~ 189 (786)
T KOG2244|consen 180 MSVFLTPDLK 189 (786)
T ss_pred eeEEeCCCcc
Confidence 86665 4443
No 266
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=78.22 E-value=3.4 Score=30.28 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=22.9
Q ss_pred HHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 123 QIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
....++||.|+|||++ +|+ .+.|....+.+.
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~ 188 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLE 188 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHH
Confidence 5566789999999987 565 456877766654
No 267
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.63 E-value=4.7 Score=27.44 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.4
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~ 121 (179)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467789999999988877663 244555665443
No 268
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=76.06 E-value=21 Score=23.95 Aligned_cols=67 Identities=9% Similarity=0.296 Sum_probs=44.4
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE
Q 030351 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (179)
Q Consensus 66 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 139 (179)
+.+++++++...++.+||-|+..--. .....+.+++..+.+.+.|+.... ..+..++++.. |.+++|
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~ 73 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVF 73 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEE
Confidence 45667777655436777777765322 467788899999976688855443 36777888865 555566
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=74.90 E-value=4.2 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHhcCCCCCcEEEEEeCCe
Q 030351 123 QIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
..+.++||.|+|||++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 555678999999999997765
No 270
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=74.84 E-value=10 Score=31.07 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred CChhhccchHHH----HHHHHHhcC-----CeEEEEEeCCCc-hHHHHhcCCCC--CcEEEEEeCCeeeeEEeCCCCHHH
Q 030351 89 WCGPCQYMAPIL----NEVGAALKD-----KIQVVKIDTEKY-PQIADTYRIEA--LPTFILFKDGKPSDRFVSQFNIVF 156 (179)
Q Consensus 89 wC~~C~~~~p~l----~~~~~~~~~-----~v~~~~vd~d~~-~~l~~~~~v~~--~Pt~~~~~~G~~~~~~~G~~~~~~ 156 (179)
-||.|-+..-.+ .++.+++.. ++-+...=++-. +..-.++|+.+ -|...+|++|+.+.++.+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 378886655444 344444332 133333322222 23345677774 588999999999999877776666
Q ss_pred HH-HHHHHHHHH
Q 030351 157 FV-FLENLICAS 167 (179)
Q Consensus 157 ~~-~i~~~i~~~ 167 (179)
+. .++++++..
T Consensus 343 l~~~i~~~~~~~ 354 (361)
T COG0821 343 LEALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHHh
Confidence 65 566665544
No 271
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.78 E-value=15 Score=30.72 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=58.8
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEe
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFV 149 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~ 149 (179)
++++..-.+..-+=-|++-.|..|-+.-..|.-++-..+ ++.-..+|-.-.++-.+.-+|.++||+++ ||+... .
T Consensus 108 ieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg--~ 182 (520)
T COG3634 108 IEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG--Q 182 (520)
T ss_pred HHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cchhhc--c
Confidence 333333346666777888899999999999998888766 57777788766666678889999999744 555433 2
Q ss_pred CCCCHHHH
Q 030351 150 SQFNIVFF 157 (179)
Q Consensus 150 G~~~~~~~ 157 (179)
|...-+++
T Consensus 183 GRmtleei 190 (520)
T COG3634 183 GRMTLEEI 190 (520)
T ss_pred cceeHHHH
Confidence 44554444
No 272
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=6 Score=32.45 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=45.1
Q ss_pred eEEEEEeCCCchHHHHhcCCCCCcEEEEE--eCCeeeeEEeCCCCHHHHH-HHHHHHHHH
Q 030351 111 IQVVKIDTEKYPQIADTYRIEALPTFILF--KDGKPSDRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 111 v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
+-.+..|..+...+..-|.+..+|.+.++ ..|+.+.+..|..+.+++. .+.++|...
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 44446677777899999999999987777 5899999999988877776 777777543
No 273
>PRK12559 transcriptional regulator Spx; Provisional
Probab=73.09 E-value=3.2 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.0
Q ss_pred EEEEecCCChhhccchHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNE 102 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~ 102 (179)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457888999999998876654
No 274
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=73.05 E-value=27 Score=23.91 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=43.9
Q ss_pred CChhhccchHHHHHHHHHhcCC-eEEEEE-eCCCch-----------HHHHhcCCCCCc-EEEEE-eCCeeeeEEeCCCC
Q 030351 89 WCGPCQYMAPILNEVGAALKDK-IQVVKI-DTEKYP-----------QIADTYRIEALP-TFILF-KDGKPSDRFVSQFN 153 (179)
Q Consensus 89 wC~~C~~~~p~l~~~~~~~~~~-v~~~~v-d~d~~~-----------~l~~~~~v~~~P-t~~~~-~~G~~~~~~~G~~~ 153 (179)
.-+.=......|..-...+..+ +.++.+ +-.... .+.++|++..-. +++++ ++|.+..++....+
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCC
Confidence 3444455555555544444443 555544 332222 788899966332 34444 99999999988888
Q ss_pred HHHHH-HHH
Q 030351 154 IVFFV-FLE 161 (179)
Q Consensus 154 ~~~~~-~i~ 161 (179)
.+.+- .|+
T Consensus 101 ~~~lf~~ID 109 (118)
T PF13778_consen 101 PEELFDTID 109 (118)
T ss_pred HHHHHHHHh
Confidence 87775 444
No 275
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=72.94 E-value=9.9 Score=30.26 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=46.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCC--eEEEEEe-CC--CchHHHHhcCCC-CCcEEEEEeCCeeeeEEeCC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDK--IQVVKID-TE--KYPQIADTYRIE-ALPTFILFKDGKPSDRFVSQ 151 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~--v~~~~vd-~d--~~~~l~~~~~v~-~~Pt~~~~~~G~~~~~~~G~ 151 (179)
.....|..|+..|..=..+. ..++..+=+ +.++..| .. .+..+...|... ++|.+..+-=|++.. +.|.
T Consensus 74 ~~t~~IR~Y~sDCn~le~v~----pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal-~r~~ 148 (305)
T COG5309 74 SYTHSIRTYGSDCNTLENVL----PAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL-NRND 148 (305)
T ss_pred cCCceEEEeeccchhhhhhH----HHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh-hcCC
Confidence 44448899997775533333 333333311 2222222 11 122455555544 788887775444433 3478
Q ss_pred CCHHHHHHHHHHHHHHhc
Q 030351 152 FNIVFFVFLENLICASLQ 169 (179)
Q Consensus 152 ~~~~~~~~i~~~i~~~~~ 169 (179)
.+.+++....+-++..++
T Consensus 149 ~tasql~~~I~~vrsav~ 166 (305)
T COG5309 149 LTASQLIEYIDDVRSAVK 166 (305)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 889998855555566665
No 276
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=71.82 E-value=57 Score=27.09 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=62.7
Q ss_pred ccccChhhH-HHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC--CeEEEEEeCCCchHHH----HhcCCC-CC
Q 030351 62 AKKQTFSSL-DDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIA----DTYRIE-AL 133 (179)
Q Consensus 62 ~~~~~~~~~-~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~----~~~~v~-~~ 133 (179)
+..++.+++ +.+-..-+...+|.|--.--+.-.++...+++++++... .+.++.||-|+-+-+. +.|+|. .-
T Consensus 251 lrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~ 330 (383)
T PF01216_consen 251 LRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSR 330 (383)
T ss_dssp EEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS
T ss_pred hhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccC
Confidence 344556664 333333356777888888899999999999999999775 4899999999976544 456766 34
Q ss_pred cEEEEEe--CCeee-eEEeCCCCHHHHHHHHHHHHHHhcccc
Q 030351 134 PTFILFK--DGKPS-DRFVSQFNIVFFVFLENLICASLQNHC 172 (179)
Q Consensus 134 Pt~~~~~--~G~~~-~~~~G~~~~~~~~~i~~~i~~~~~~~~ 172 (179)
|.+-+.+ +-.-+ -...+..+......+++||+..+.+..
T Consensus 331 PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 331 PQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp -EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred CceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 9987763 22222 222232333344466777777775543
No 277
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=71.05 E-value=14 Score=22.68 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=34.4
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC----CchHHHHhcCCCCCcEEEEEeCCee
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE----KYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
..|+.+.|+.|++.+-.+++..- .+.+..+|.. ..+++.+.-....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 45778889999777644443322 3555666653 224566666667899985 35653
No 278
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=70.49 E-value=35 Score=25.46 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCCcEEEEEe-cCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC----------------------------CchHHHH
Q 030351 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE----------------------------KYPQIAD 126 (179)
Q Consensus 77 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d----------------------------~~~~l~~ 126 (179)
.+|.+++.|| .++--.|-...-.+-..+.++.+ +-.++.+.+| .+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 4889999998 46666676677777777777664 2334444433 3568889
Q ss_pred hcCCC----CCcE---EEEEeCCee
Q 030351 127 TYRIE----ALPT---FILFKDGKP 144 (179)
Q Consensus 127 ~~~v~----~~Pt---~~~~~~G~~ 144 (179)
+|||- |++- +++..+|..
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~ 136 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGIL 136 (196)
T ss_pred hcCceecCCCcceeeeEEEccccce
Confidence 99875 5664 334466654
No 279
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=70.07 E-value=20 Score=25.51 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCC-c-EEEEEeCCeee
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEAL-P-TFILFKDGKPS 145 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~-P-t~~~~~~G~~~ 145 (179)
+++-.|.+|.--|+.|-.....|.+.- -++.+.|..+..+....+.+..++.-- + ++++.++|+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 567788899999999999666655432 334699999988888888888887743 3 45566787754
No 280
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=69.90 E-value=12 Score=28.44 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=26.8
Q ss_pred chHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHH
Q 030351 121 YPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVF 156 (179)
Q Consensus 121 ~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~ 156 (179)
++.+.++|+|+.+|+|++.-. ...+++.|-.+-++
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ 185 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQ 185 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHH
Confidence 578899999999999998733 44567778766444
No 281
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=69.25 E-value=23 Score=25.86 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=51.8
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHH-hcC-CeE-EEEEeCCCc-----------------------------hHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAA-LKD-KIQ-VVKIDTEKY-----------------------------PQIA 125 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~-~~~-~v~-~~~vd~d~~-----------------------------~~l~ 125 (179)
||+-+|..-|-.--.=..-.|.++.+.+. ++. ++. ...||.|+. ..+.
T Consensus 37 GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~ 116 (160)
T PF09695_consen 37 GKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVR 116 (160)
T ss_pred CCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCcee
Confidence 77766666654433333445556666555 442 222 333455432 1223
Q ss_pred HhcCCCCC-cEEEEE-eCCeeeeEEeCCCCHHHHHHHHHHHHH
Q 030351 126 DTYRIEAL-PTFILF-KDGKPSDRFVSQFNIVFFVFLENLICA 166 (179)
Q Consensus 126 ~~~~v~~~-Pt~~~~-~~G~~~~~~~G~~~~~~~~~i~~~i~~ 166 (179)
..+++..- -+++++ ++|+..-...|.++.++++.+.+++++
T Consensus 117 ~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 117 KAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred ccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHHhc
Confidence 33444322 245554 899999889999999999877777654
No 282
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.01 E-value=6.7 Score=23.59 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC----chHHHHhcCCCCCcEEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFIL 138 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~~ 138 (179)
.|+.+.|+.|.+.+-.++...-. +....++... ..++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 57788999999887666554222 4444555422 244555555668899864
No 283
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=63.29 E-value=6.6 Score=27.59 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.1
Q ss_pred EEEEecCCChhhccchHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNE 102 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~ 102 (179)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 446778999999997766654
No 284
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=60.65 E-value=16 Score=27.26 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=38.8
Q ss_pred hHHHHHhcCCCcEEEEEe--cCCChhhccchHHHHHHHHHhcCC-eEEEEEeCCC
Q 030351 69 SLDDLLQKSDKPVLVDFY--ATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEK 120 (179)
Q Consensus 69 ~~~~~~~~~~k~vvv~F~--a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~ 120 (179)
+|.+++ +.-|.|.|. ++.-|.|..+...+.+++.++.++ +..+...+|.
T Consensus 25 ~fhd~~---gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 25 KFHDYL---GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred ehhhhc---ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 344454 667888898 467999999999999999998864 8888887764
No 285
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=58.42 E-value=12 Score=31.03 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=34.8
Q ss_pred ChhhccchHHHHHHHHHhcC-------CeEEEEEeCCCch--H-HHHhcCCC-CCcE-EEEEeCCeeeeEE-eCCCCHHH
Q 030351 90 CGPCQYMAPILNEVGAALKD-------KIQVVKIDTEKYP--Q-IADTYRIE-ALPT-FILFKDGKPSDRF-VSQFNIVF 156 (179)
Q Consensus 90 C~~C~~~~p~l~~~~~~~~~-------~v~~~~vd~d~~~--~-l~~~~~v~-~~Pt-~~~~~~G~~~~~~-~G~~~~~~ 156 (179)
||.|-+..-.+.++.++..+ .+.+.-+-|--|. + --.+||+. +-+- ..+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 66666555555444444332 4666666665441 2 22457777 5554 8899999999987 44433333
Q ss_pred H
Q 030351 157 F 157 (179)
Q Consensus 157 ~ 157 (179)
+
T Consensus 351 L 351 (359)
T PF04551_consen 351 L 351 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 286
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=57.99 E-value=83 Score=24.10 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=49.8
Q ss_pred hhHHHHHhcCCCcEEEEEe-----cCCChhhccchHHHHHHHHHhcCC-eEEEEEeCCCc--------------------
Q 030351 68 SSLDDLLQKSDKPVLVDFY-----ATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKY-------------------- 121 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~-----a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~~-------------------- 121 (179)
-.+.++.....+.+|..|. ...|+.|-.+.-.+......+..+ +.|+.|.-.-.
T Consensus 58 v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 58 VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSY 137 (211)
T ss_pred ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcC
Confidence 3455666555555555554 456999999999995555555544 88887765322
Q ss_pred -hHHHHhcCC-----CCCcEEEEE-eCCeeee
Q 030351 122 -PQIADTYRI-----EALPTFILF-KDGKPSD 146 (179)
Q Consensus 122 -~~l~~~~~v-----~~~Pt~~~~-~~G~~~~ 146 (179)
.++..+|++ ...|.+-+| ++|..|-
T Consensus 138 gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 138 GSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred CCcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 234445666 567887666 6665553
No 287
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.83 E-value=58 Score=21.93 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=43.4
Q ss_pred hhHHHHHhcCCCcEEEEEe----cCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcC-CCCCcEEE-EEeC
Q 030351 68 SSLDDLLQKSDKPVLVDFY----ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR-IEALPTFI-LFKD 141 (179)
Q Consensus 68 ~~~~~~~~~~~k~vvv~F~----a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~~-~~~~ 141 (179)
+.+++.+. ..+++++.- .|.|+...+....|.. ++. +.|..||+-++.++++.+. ...+|||- +|-+
T Consensus 6 ~~I~~~i~--~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 6 DRIQKQIK--ENPVVLFMKGTPEFPQCGFSAQAVQILSA----CGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred HHHHHHhh--cCceEEEecCCCCCCCCCccHHHHHHHHH----cCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 34455553 334444333 3567776655544433 332 7899999999999988764 34688864 5678
Q ss_pred Ceee
Q 030351 142 GKPS 145 (179)
Q Consensus 142 G~~~ 145 (179)
|+-+
T Consensus 79 GEfv 82 (105)
T COG0278 79 GEFV 82 (105)
T ss_pred CEEe
Confidence 8543
No 288
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=56.09 E-value=98 Score=24.34 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=60.9
Q ss_pred ccCCCceeccccChhhH--HHHHhcCCCcEEEEEe-cCCChhhccc--hHHHHHHHHHhcCCeEEEEEeCCCc-------
Q 030351 54 RRLLPVVEAKKQTFSSL--DDLLQKSDKPVLVDFY-ATWCGPCQYM--APILNEVGAALKDKIQVVKIDTEKY------- 121 (179)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~k~vvv~F~-a~wC~~C~~~--~p~l~~~~~~~~~~v~~~~vd~d~~------- 121 (179)
....|......+..+.. ...+ .+++.||..+ ..|-..|.+- .|..+++...-.+.+.++.|+..++
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l--~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLL--RGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCccccccc--CCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 33445555555544322 2222 3566655544 4454333322 2444555554433688888887653
Q ss_pred ----------------------------hHHHHhcCCCCCcE--EEEE-eCCeeeeEEeCCCCHHHHHHHHHHHH
Q 030351 122 ----------------------------PQIADTYRIEALPT--FILF-KDGKPSDRFVSQFNIVFFVFLENLIC 165 (179)
Q Consensus 122 ----------------------------~~l~~~~~v~~~Pt--~~~~-~~G~~~~~~~G~~~~~~~~~i~~~i~ 165 (179)
.++.+.+++...-+ ++++ .+|++.=.-.|.-+.++++.+.+.++
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k~~~ 250 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWKCVK 250 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHHHHh
Confidence 25566677776555 3333 57777666677788888876665544
No 289
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=56.02 E-value=19 Score=24.69 Aligned_cols=50 Identities=18% Similarity=0.440 Sum_probs=35.0
Q ss_pred ChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-HHHHhcC--CCCCcEEEEEe
Q 030351 90 CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYR--IEALPTFILFK 140 (179)
Q Consensus 90 C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~--v~~~Pt~~~~~ 140 (179)
|++|..+...|.-+-. +..++.+.+|+....+ ++.+..| -++.|++++-.
T Consensus 24 Cp~c~~iEGlLa~~P~-l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPD-LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChh-hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 9999988887755444 3335889999988765 4445554 35899986654
No 290
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=52.87 E-value=25 Score=23.48 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=39.2
Q ss_pred EecCCChhhccchH-------HHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 85 FYATWCGPCQYMAP-------ILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 85 F~a~wC~~C~~~~p-------~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
|....|+.|..+.. ..+-....+.+ +..+ +| .+...+++..+++.+ ..|.-..+..|..+.+..
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G-~i~i-~d-P~~SwVAk~l~i~~~------~pG~YAi~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEG-IIAL-MD-PEKSWVARWQRIDKF------VPGIYAISVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcce-EEEE-EC-CchhHHHHHhCCCCC------CCCeEEEEecCcCCHHHH
Confidence 77889999963321 22234444544 2222 33 334788888888732 334444446677777666
Q ss_pred HHHHH
Q 030351 158 VFLEN 162 (179)
Q Consensus 158 ~~i~~ 162 (179)
..+++
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 55543
No 291
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.73 E-value=14 Score=25.24 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=16.4
Q ss_pred EEEEecCCChhhccchHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNE 102 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~ 102 (179)
+..|+-+.|..|++....|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346788999999988766654
No 292
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=52.59 E-value=22 Score=26.74 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHHHHHHHHHH
Q 030351 120 KYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFFVFLENLIC 165 (179)
Q Consensus 120 ~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~~i~~~i~ 165 (179)
++...+.+.||.|+|+|++-.++..-..+-|...-+.+ +++++
T Consensus 167 ~~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~---~~~l~ 209 (209)
T cd03021 167 ENTDEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQV---ADFLG 209 (209)
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHH---HHHhC
No 293
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.96 E-value=47 Score=24.14 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=41.8
Q ss_pred cccCCCceeccccChhhHHHHHhcCCCcEEEE-EecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC
Q 030351 53 KRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVD-FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119 (179)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~-F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d 119 (179)
.+...|.+.+...+.++.. +....+|..+|. |=+=.-+-|-..-..|.+.+.++.+ +.++.|..|
T Consensus 20 vGd~ap~ftl~~~dL~~v~-l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~D 85 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVS-LADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMD 85 (158)
T ss_pred cCCcCCceEEEcCccccee-ccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCC
Confidence 3445565665544443332 222335555554 4466789999999999999999886 777777766
No 294
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.30 E-value=40 Score=22.08 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCchHHHHhc----C----CCCCcEEEEEeCCeee
Q 030351 110 KIQVVKIDTEKYPQIADTY----R----IEALPTFILFKDGKPS 145 (179)
Q Consensus 110 ~v~~~~vd~d~~~~l~~~~----~----v~~~Pt~~~~~~G~~~ 145 (179)
++.|-.+|++.+++..+.+ + -..+|.+ |.+|+.+
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI--Fi~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQI--FNGDEYC 71 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE--EECCEEe
Confidence 4888899998776554432 2 2455655 3555544
No 295
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=49.51 E-value=56 Score=19.62 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=32.2
Q ss_pred EEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC----CchHHHHhcCCCCCcEEE
Q 030351 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE----KYPQIADTYRIEALPTFI 137 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~ 137 (179)
+-.|+.+.|+.|++.+-.++...-. +....++.. ...++.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3445567799998887766654322 444445542 124566666777899874
No 296
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=49.37 E-value=1.1e+02 Score=23.12 Aligned_cols=77 Identities=13% Similarity=0.280 Sum_probs=44.6
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc------------------hHHHHhcCCCC--CcEEEEEeCC
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY------------------PQIADTYRIEA--LPTFILFKDG 142 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~------------------~~l~~~~~v~~--~Pt~~~~~~G 142 (179)
=+|.+..|..|--....|.+++++ + .|..+..++|.. +...+.++..+ +|.+++ ||
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 357788999999999999999999 3 577777777642 24555666664 576644 55
Q ss_pred eeeeEEeCCCCHHHHH-HHHHHHHH
Q 030351 143 KPSDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 143 ~~~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
+.- ..|. +...+. .|......
T Consensus 79 ~~~--~~g~-~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGS-DRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT--HHHHHHHHHHHHHT
T ss_pred eee--eecc-CHHHHHHHHHHhhcc
Confidence 533 2344 334443 55555443
No 297
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=48.14 E-value=20 Score=23.90 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEecCCChhhccchHHHHHHHHHhc-CCeEEEEEeCCCchHHHHhcC--C--------CCCcEE-EEEeCCeeeeEEe
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIADTYR--I--------EALPTF-ILFKDGKPSDRFV 149 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~vd~d~~~~l~~~~~--v--------~~~Pt~-~~~~~G~~~~~~~ 149 (179)
.+|-+.+..-++.+..-+++..-+. .++.|-.||+..+++..+.+. + .+.|.. .+|.+++-++-+.
T Consensus 4 ~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 4 KVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 3444444455566665555555554 359999999987654433221 1 233332 3677777555443
No 298
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=47.96 E-value=59 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeee
Q 030351 100 LNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (179)
Q Consensus 100 l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 145 (179)
+.++.++++..+.| |.+..+.++|+|+.+|.++. .+|+..
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEE-ecCCEE
Confidence 45666666544444 55678999999999999865 566543
No 299
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=47.29 E-value=44 Score=24.93 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-hHHHHhcCCCCCcEEE
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFI 137 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~ 137 (179)
+...+-.|+.++|+.|...+=.+++.-- .+....+|.+.. +++.+..-...+|+++
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 3444556777889999998876655321 255666665443 3555555556789985
No 300
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=46.98 E-value=61 Score=19.47 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=29.4
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCc-hHHHHhcCC-CCCcEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRI-EALPTFI 137 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~~~v-~~~Pt~~ 137 (179)
.|+.+.|++|++.+=.++...-. +....++.... .++.+..-. ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 45677899999887766654322 34444554432 333333333 5899885
No 301
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=46.48 E-value=49 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=27.6
Q ss_pred HHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE-eCCeee
Q 030351 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDGKPS 145 (179)
Q Consensus 101 ~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~ 145 (179)
.++.++++..+.| |+...|.++|+|+.+|.++.- .+|+..
T Consensus 157 ~~~~~~l~~~vYf-----dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHhCCceEE-----cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 4555666544444 455679999999999999752 667644
No 302
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=45.77 E-value=1.2e+02 Score=22.20 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=31.9
Q ss_pred hcCCCCCcE--EEEEeCCeeeeEEeCCCCHHHHHHHHHHHHHHh
Q 030351 127 TYRIEALPT--FILFKDGKPSDRFVSQFNIVFFVFLENLICASL 168 (179)
Q Consensus 127 ~~~v~~~Pt--~~~~~~G~~~~~~~G~~~~~~~~~i~~~i~~~~ 168 (179)
.++++.--. +++.++|+..-...|..+..+++.+.+++.+.+
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll~~l~ 183 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLLQKLL 183 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHHHHHhc
Confidence 667665443 444589998888889999999998888877654
No 303
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=45.14 E-value=99 Score=25.15 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred hhhccchHHHHHHHHHhcCCeEEEEE-eCCC-----chHHHHhcCCC-----CCcEEEEEeCCeeee----E--EeCCCC
Q 030351 91 GPCQYMAPILNEVGAALKDKIQVVKI-DTEK-----YPQIADTYRIE-----ALPTFILFKDGKPSD----R--FVSQFN 153 (179)
Q Consensus 91 ~~C~~~~p~l~~~~~~~~~~v~~~~v-d~d~-----~~~l~~~~~v~-----~~Pt~~~~~~G~~~~----~--~~G~~~ 153 (179)
++..-.+.++++++.++-.+-.+++| |..+ +.++.+++|+. ..|-++++..++.-. . -.|..+
T Consensus 162 ~hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k~wl~liEaVtS~GPv~ 241 (306)
T PF06616_consen 162 PHNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEKNWLFLIEAVTSHGPVD 241 (306)
T ss_dssp TTHHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTTTEEEEEEE--TT----
T ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCCCcEEEEEEEcCcCCCC
Confidence 55556667889999988765444444 4432 45788888877 689999997665432 2 247777
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 030351 154 IVFFVFLENLICASLQNHCLF 174 (179)
Q Consensus 154 ~~~~~~i~~~i~~~~~~~~~~ 174 (179)
.+-...|.++.+.. +.++.|
T Consensus 242 ~kR~~eL~~l~~~~-~~g~vf 261 (306)
T PF06616_consen 242 PKRKRELEELFEGS-KAGLVF 261 (306)
T ss_dssp HHHHHHHHHHT-BT-TCEEEE
T ss_pred HHHHHHHHHHHhcC-CCCeEE
Confidence 77777787776665 555544
No 304
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=44.53 E-value=46 Score=27.40 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=33.5
Q ss_pred ecCCChhhcc-chHHHHHHHHHhcC---CeEEEEEeCC--Cch-HHHHhcCCCCC-c-EEEEEeCCeeeeEEe
Q 030351 86 YATWCGPCQY-MAPILNEVGAALKD---KIQVVKIDTE--KYP-QIADTYRIEAL-P-TFILFKDGKPSDRFV 149 (179)
Q Consensus 86 ~a~wC~~C~~-~~p~l~~~~~~~~~---~v~~~~vd~d--~~~-~l~~~~~v~~~-P-t~~~~~~G~~~~~~~ 149 (179)
.-|.|+-|.- +....+++.+.+.. .+.+..+-|- -.. .-..++||.+- + ..++|++|+.+.++.
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC
Confidence 3455555532 22333444444442 3444443332 222 22456888765 4 477889999877754
No 305
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=42.69 E-value=95 Score=24.35 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=46.9
Q ss_pred CcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC------------------chHHHHhcCCCCCcEEEEEe
Q 030351 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK------------------YPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 79 k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~------------------~~~l~~~~~v~~~Pt~~~~~ 140 (179)
+.||=.|.+-.|..|--....|.+++.+- .|.-+..++|. ...+.+.|+-++++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 44555666788999999999999998873 25544444442 34677789999998877777
Q ss_pred CCeeee
Q 030351 141 DGKPSD 146 (179)
Q Consensus 141 ~G~~~~ 146 (179)
||+...
T Consensus 120 nGr~~~ 125 (261)
T COG5429 120 NGRVHA 125 (261)
T ss_pred echhhh
Confidence 776544
No 306
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=42.18 E-value=40 Score=24.43 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=25.8
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~v 116 (179)
+|+..-||+|--..+.++++..+++-.+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 466788999999999999999988644454433
No 307
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.13 E-value=63 Score=30.16 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=18.7
Q ss_pred CCChhhccchHHHHHHHHHhcCC
Q 030351 88 TWCGPCQYMAPILNEVGAALKDK 110 (179)
Q Consensus 88 ~wC~~C~~~~p~l~~~~~~~~~~ 110 (179)
.|||.|+...-.++--.++-.+.
T Consensus 173 NWcP~~~TAiSd~EVe~~e~~g~ 195 (877)
T COG0525 173 NWCPKCRTAISDIEVEYKEVEGK 195 (877)
T ss_pred cCCCccccchhhhhhccceeeee
Confidence 69999999998888777766654
No 308
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.62 E-value=77 Score=18.89 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=32.3
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC-chHHHHhcCCCCCcEEEEEeCCe
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-YPQIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
.|+.+.|++|.+.+-.++.-. .+-.+..+.+|... ..++.+......+|+++. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 467788999997766554421 11124445555322 345555556678898753 3443
No 309
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=41.34 E-value=1e+02 Score=20.15 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch-HHHHhcCCCCCcEEE
Q 030351 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYRIEALPTFI 137 (179)
Q Consensus 88 ~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~ 137 (179)
.+|++|++.+=.|.+- +-.+.+..+|..+.+ ++.+..-...+|++.
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 5788888876665443 112556667766644 444445556789664
No 310
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.66 E-value=76 Score=24.56 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=37.0
Q ss_pred ChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeE
Q 030351 90 CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147 (179)
Q Consensus 90 C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 147 (179)
-.||..++..++++++++++.+.++--|+.- +..|. -.++-+++|+.+..
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEec
Confidence 4799999999999999999766666556543 22222 24778899998864
No 311
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.55 E-value=41 Score=25.56 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=25.8
Q ss_pred cEEEEEecCCChhhccchHHHHHHHHHhc
Q 030351 80 PVLVDFYATWCGPCQYMAPILNEVGAALK 108 (179)
Q Consensus 80 ~vvv~F~a~wC~~C~~~~p~l~~~~~~~~ 108 (179)
..+.+.+.|-|+.|--..|.++++.+..+
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~g 30 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQPG 30 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcCC
Confidence 35778999999999999999999999864
No 312
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.54 E-value=1.4e+02 Score=24.58 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=40.0
Q ss_pred eeccccChhhHHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcC---CeEEEEEeCCCchHHHHhc
Q 030351 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTY 128 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~ 128 (179)
.-+.+++++|.+++. ++|.|.+|+|+.+.-.... +..-..+++++.+ .+.++..|.+.-..-..-+
T Consensus 210 pLVREiTFeN~EELt-EEGlPflILf~~kdD~~s~--k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~Hl 278 (375)
T KOG0912|consen 210 PLVREITFENAEELT-EEGLPFLILFRKKDDKESE--KIFKNAIARELDDETLAINFLTADGKVFKHPLRHL 278 (375)
T ss_pred hhhhhhhhccHHHHh-hcCCceEEEEecCCcccHH--HHHHHHHHHHhhhhhhccceeecCcceecchHHHh
Confidence 345677888888776 5589999999987643322 2222344555443 2777777776544333333
No 313
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.49 E-value=45 Score=24.20 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=23.2
Q ss_pred ccChhhHHHHHhcCCCcEEEEEecCCChh
Q 030351 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGP 92 (179)
Q Consensus 64 ~~~~~~~~~~~~~~~k~vvv~F~a~wC~~ 92 (179)
.++...+...+.+.+|++++.|..-|--+
T Consensus 119 ~isy~~lr~~I~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 119 TISYSWLRNEIQERDKPWLILFGTGWGLP 147 (190)
T ss_pred cccHHHHHHHHhhcCCcEEEEecCCCCCC
Confidence 45667777788888999999999999543
No 314
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=37.24 E-value=1.6e+02 Score=24.29 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=48.0
Q ss_pred HHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhc--CCeEEEEEeCCCchHHHHhcCCCCCcEEEEEe
Q 030351 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (179)
Q Consensus 72 ~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 140 (179)
+++....++++|+=+. +...+.+.++++... +.+.|+.+|..+...|.+-|....+=.++.|.
T Consensus 21 ~L~~~gy~v~~vDNl~------n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa 85 (343)
T KOG1371|consen 21 ALLKRGYGVVIVDNLN------NSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFA 85 (343)
T ss_pred HHHhCCCcEEEEeccc------ccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeeh
Confidence 4555555677776443 344788888888777 57999999999999999999999877777774
No 315
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=35.80 E-value=14 Score=26.33 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=11.0
Q ss_pred CChhhccchHHH
Q 030351 89 WCGPCQYMAPIL 100 (179)
Q Consensus 89 wC~~C~~~~p~l 100 (179)
-||+|++..|.|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 599999999987
No 316
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=35.57 E-value=14 Score=26.30 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=11.0
Q ss_pred CChhhccchHHH
Q 030351 89 WCGPCQYMAPIL 100 (179)
Q Consensus 89 wC~~C~~~~p~l 100 (179)
.||+|++..|.|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 599999999987
No 317
>PRK10387 glutaredoxin 2; Provisional
Probab=35.19 E-value=75 Score=23.37 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCee
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 144 (179)
.++.+.|++|.+.+=.++..--. +....++..+.....+......+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 35677899999877665443222 3344444433332233334457898854 34533
No 318
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=35.13 E-value=43 Score=25.04 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=15.7
Q ss_pred ccChhhHHHHHhcCCCcEEEEEecCC
Q 030351 64 KQTFSSLDDLLQKSDKPVLVDFYATW 89 (179)
Q Consensus 64 ~~~~~~~~~~~~~~~k~vvv~F~a~w 89 (179)
.++..++.+.+.+.++|+++.|.+-|
T Consensus 118 ~is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 118 TISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp -B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred CcCHHHHHHHHhccCCeEEEEecCCC
Confidence 45777788888777889999999988
No 319
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.47 E-value=35 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.2
Q ss_pred EEEecCCChhhccchHHHHHH
Q 030351 83 VDFYATWCGPCQYMAPILNEV 103 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~ 103 (179)
..|+-+.|..|++....|++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 467889999999987666543
No 320
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.55 E-value=36 Score=23.02 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=16.7
Q ss_pred EEEecCCChhhccchHHHHH
Q 030351 83 VDFYATWCGPCQYMAPILNE 102 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~ 102 (179)
..|+-+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46788999999998887766
No 321
>COG3411 Ferredoxin [Energy production and conversion]
Probab=31.33 E-value=1.2e+02 Score=18.51 Aligned_cols=30 Identities=7% Similarity=0.243 Sum_probs=21.2
Q ss_pred CcEEEEEeCCeeeeEEeCCCCHHHHH-HHHHHHHH
Q 030351 133 LPTFILFKDGKPSDRFVSQFNIVFFV-FLENLICA 166 (179)
Q Consensus 133 ~Pt~~~~~~G~~~~~~~G~~~~~~~~-~i~~~i~~ 166 (179)
=|++++|.+| .+.+..+.++.. .+++++.+
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHhC
Confidence 3999999999 455666777776 56666653
No 322
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=30.84 E-value=3.1e+02 Score=22.68 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=56.9
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCeeeeEEeCCCCHHHH
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFVSQFNIVFF 157 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 157 (179)
++-.+|.++......-+.+...+.+++++.+=.++. .+.-.-...-.-.+.-.++||..+=---+.++......+.+++
T Consensus 249 g~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~ 327 (350)
T TIGR03107 249 GEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDF 327 (350)
T ss_pred CCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHH
Confidence 444445677778888889999999999997644544 2221111111224556789998776555555555666677777
Q ss_pred HHHHHHHHHHhc
Q 030351 158 VFLENLICASLQ 169 (179)
Q Consensus 158 ~~i~~~i~~~~~ 169 (179)
....+++...+.
T Consensus 328 ~~~~~Ll~~~i~ 339 (350)
T TIGR03107 328 LAAQAFLQAIVK 339 (350)
T ss_pred HHHHHHHHHHHH
Confidence 755556555443
No 323
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=30.49 E-value=1.9e+02 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEE
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKI 116 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~v 116 (179)
++-+.++.-.+-|.+|+ ..+..++++++- .+.++..
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 44556666688899999 888888888873 3555544
No 324
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=30.24 E-value=33 Score=31.32 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEecCCChhhccchHHHHHHHHHhcC
Q 030351 83 VDFYATWCGPCQYMAPILNEVGAALKD 109 (179)
Q Consensus 83 v~F~a~wC~~C~~~~p~l~~~~~~~~~ 109 (179)
+-.-+.|.-+.+--...|.-+...|++
T Consensus 1345 lplaaswsdpskipqevlriisdyypd 1371 (1463)
T PHA03308 1345 LPLAASWSDPSKIPQEVLRIISDYYPD 1371 (1463)
T ss_pred cccccccCCcccchHHHHHHHhhhCCC
Confidence 345578998888878888777777765
No 325
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=30.05 E-value=1e+02 Score=23.00 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=28.1
Q ss_pred EecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEEeCCe
Q 030351 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 85 F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
++...||+|++.+=.+....-. +..+.++.++.....+......+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~----~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP----VEKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC----eEEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 5567799998766555433222 2233333333333333334567898753 3554
No 326
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.97 E-value=1.3e+02 Score=21.80 Aligned_cols=42 Identities=10% Similarity=0.370 Sum_probs=34.7
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeCC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE 119 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d 119 (179)
++-+.+.++++.++.|.-+...++.+++.+.+ .|.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678888899999999999999999999987 6776666554
No 327
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=29.22 E-value=1.7e+02 Score=19.24 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=36.5
Q ss_pred EecC-CChhhccch---HH---H-HHHHHHhcCC-eEEEEEeCCCch------HHHHhc--CCCCCcEEEEEeCCeeeeE
Q 030351 85 FYAT-WCGPCQYMA---PI---L-NEVGAALKDK-IQVVKIDTEKYP------QIADTY--RIEALPTFILFKDGKPSDR 147 (179)
Q Consensus 85 F~a~-wC~~C~~~~---p~---l-~~~~~~~~~~-v~~~~vd~d~~~------~l~~~~--~v~~~Pt~~~~~~G~~~~~ 147 (179)
|+|. -|+.|..+= .+ | ..+.++|++. +.+.+||+.+.. ++.++. .---+|.++ -+|+.++.
T Consensus 3 YGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~--i~~eiV~E 80 (93)
T PF07315_consen 3 YGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV--INDEIVAE 80 (93)
T ss_dssp EE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE--ETTEEEEE
T ss_pred ccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE--ECCEEEec
Confidence 5554 499998762 22 2 3456778865 999999997643 344433 233578654 36777764
Q ss_pred EeCCCCHHHH
Q 030351 148 FVSQFNIVFF 157 (179)
Q Consensus 148 ~~G~~~~~~~ 157 (179)
|...-+.+
T Consensus 81 --Gnp~LK~I 88 (93)
T PF07315_consen 81 --GNPQLKDI 88 (93)
T ss_dssp --SS--HHHH
T ss_pred --CCccHHHH
Confidence 55444443
No 328
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=29.19 E-value=3e+02 Score=21.96 Aligned_cols=86 Identities=14% Similarity=0.250 Sum_probs=53.6
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhccchHHHHHHHHHhcCC-eEEEEEeCCCchHHHHhc---CCCCCcE---EEEEe--
Q 030351 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADTY---RIEALPT---FILFK-- 140 (179)
Q Consensus 70 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~~~~l~~~~---~v~~~Pt---~~~~~-- 140 (179)
++.++...+..+||.|=+-.-.. =-..+..+-+.+..+ +.++.+-.....+..+-| -+..+|+ |++|+
T Consensus 64 lq~~~~~~~~~vvivfEGrDAAG---KgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviFdRS 140 (270)
T COG2326 64 LQRWVAETGQRVVIVFEGRDAAG---KGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIFDRS 140 (270)
T ss_pred HHHHHHhcCCeEEEEEecccccC---CCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEechh
Confidence 33444556778888887643211 123667777776643 666666555444444433 3667887 88885
Q ss_pred --CCeeeeEEeCCCCHHHHH
Q 030351 141 --DGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 141 --~G~~~~~~~G~~~~~~~~ 158 (179)
|--.+.|..|..+.++..
T Consensus 141 wYnr~gVeRVmGfct~~q~~ 160 (270)
T COG2326 141 WYNRAGVERVMGFCTPKQYK 160 (270)
T ss_pred hccccCeeeccccCCHHHHH
Confidence 555678999999888665
No 329
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.86 E-value=1.3e+02 Score=24.05 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=59.3
Q ss_pred eccccChhhHHHHHhcC-CCc--EEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---HHHHhcCCCCCc
Q 030351 61 EAKKQTFSSLDDLLQKS-DKP--VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALP 134 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~~~-~k~--vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~P 134 (179)
.-..++.+.|.+++..- .+. .-+.++.+.|..-..=.....+++++..--+++..-+..+.. ++++..+ .|
T Consensus 160 sQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~---~~ 236 (280)
T TIGR00216 160 SQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHG---PP 236 (280)
T ss_pred EcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhC---CC
Confidence 33455566666555421 122 234467888988777777888888875432333333444433 4455554 57
Q ss_pred EEEE----------EeCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 135 TFIL----------FKDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 135 t~~~----------~~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
++++ |++.+.++--.|.-+.+.+. .+.+.++
T Consensus 237 t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 237 SYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred EEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 7765 23445677778888777665 5655554
No 330
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.14 E-value=60 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.0
Q ss_pred EEEEecCCChhhccchHHHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEVG 104 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~~ 104 (179)
+..|+.+.|..|+..+..|++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 55688899999999887776543
No 331
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=28.00 E-value=1.1e+02 Score=20.33 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEecCCChhhccchH-HHHH--HHHHhcCC
Q 030351 82 LVDFYATWCGPCQYMAP-ILNE--VGAALKDK 110 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p-~l~~--~~~~~~~~ 110 (179)
|-.||-+-||.|+++.. .|.. ...++.+.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~ 34 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI 34 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce
Confidence 45688899999998733 4554 33555554
No 332
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.33 E-value=92 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.1
Q ss_pred EEecCCChhhccchHHHHHHHHHhc
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALK 108 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~ 108 (179)
+|+..-||+|--..+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667789999999999999999985
No 333
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.17 E-value=1.5e+02 Score=24.04 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=59.1
Q ss_pred cccChhhHHHHHh---cCCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---HHHHhcCCCCCcEE
Q 030351 63 KKQTFSSLDDLLQ---KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTF 136 (179)
Q Consensus 63 ~~~~~~~~~~~~~---~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~ 136 (179)
..++.+.|++++. +...-+.+.++.+.|..-..=.....+++++..--+++..-+..... +++++++ .|++
T Consensus 164 TT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~---~~t~ 240 (298)
T PRK01045 164 TTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG---APAY 240 (298)
T ss_pred CCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---CCEE
Confidence 4445555555543 22223334448899988777777788888764322333333333333 4455554 4666
Q ss_pred EE----------EeCCeeeeEEeCCCCHHHHH-HHHHHHHHH
Q 030351 137 IL----------FKDGKPSDRFVSQFNIVFFV-FLENLICAS 167 (179)
Q Consensus 137 ~~----------~~~G~~~~~~~G~~~~~~~~-~i~~~i~~~ 167 (179)
.+ +++-+.++--.|.-+.+.+. .+.+.|+..
T Consensus 241 ~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 241 LIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 54 23445677778888777665 677776654
No 334
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=26.88 E-value=1.7e+02 Score=18.60 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=18.5
Q ss_pred CcEEEEEeCCeeeeEEeCCCCHHHHH
Q 030351 133 LPTFILFKDGKPSDRFVSQFNIVFFV 158 (179)
Q Consensus 133 ~Pt~~~~~~G~~~~~~~G~~~~~~~~ 158 (179)
-.++.+|..|+.+. .|..+.++..
T Consensus 49 ~~t~~IF~sGki~i--tGaks~~~~~ 72 (86)
T PF00352_consen 49 KATVLIFSSGKIVI--TGAKSEEEAK 72 (86)
T ss_dssp TEEEEEETTSEEEE--EEESSHHHHH
T ss_pred cEEEEEEcCCEEEE--EecCCHHHHH
Confidence 36788999999875 4777777776
No 335
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=26.12 E-value=1.5e+02 Score=17.68 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=31.1
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCC----chHHHHhcCCCCCcEEE
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFI 137 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~ 137 (179)
.|+.+-++.|+...-.++...-. +....++..+ ..++.+..-...+|++.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 46677788888776665554332 4445555432 23556666677899885
No 336
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.81 E-value=52 Score=29.36 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.6
Q ss_pred EEEEEecCC
Q 030351 81 VLVDFYATW 89 (179)
Q Consensus 81 vvv~F~a~w 89 (179)
.+|+|+...
T Consensus 141 liiyf~das 149 (1103)
T KOG1420|consen 141 LIIYFIDAS 149 (1103)
T ss_pred eEEEEEcCC
Confidence 445566543
No 337
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=25.38 E-value=2.3e+02 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.640 Sum_probs=18.3
Q ss_pred EEEec--CCChhhccchHHHHHHHHHhcCCeEE
Q 030351 83 VDFYA--TWCGPCQYMAPILNEVGAALKDKIQV 113 (179)
Q Consensus 83 v~F~a--~wC~~C~~~~p~l~~~~~~~~~~v~~ 113 (179)
|..|. +-|.-|. ++++++.++|+. +.+
T Consensus 99 i~l~te~~pC~SC~---~vi~qF~~~~pn-i~~ 127 (133)
T PF14424_consen 99 IDLFTELPPCESCS---NVIEQFKKDFPN-IKV 127 (133)
T ss_pred EEEEecCCcChhHH---HHHHHHHHHCCC-cEE
Confidence 44554 4488887 488888889885 444
No 338
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=24.84 E-value=47 Score=18.68 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.3
Q ss_pred CCChhhccchHHHHHHHHHhc
Q 030351 88 TWCGPCQYMAPILNEVGAALK 108 (179)
Q Consensus 88 ~wC~~C~~~~p~l~~~~~~~~ 108 (179)
-+|.+|+.=.+.+.++.++..
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHT
T ss_pred CCCCCcHhHHHHHHHHHHHHH
Confidence 379999999998888777654
No 339
>PHA02131 hypothetical protein
Probab=24.78 E-value=1.6e+02 Score=17.45 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEeCCeeeeEEeCCCCHHHHHHHHHHHHHHh
Q 030351 129 RIEALPTFILFKDGKPSDRFVSQFNIVFFVFLENLICASL 168 (179)
Q Consensus 129 ~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~~i~~~i~~~~ 168 (179)
.-.|+-+.++|++|+.++---. .+..++..+++.-++..
T Consensus 25 ~~~g~~c~imfk~~~v~dctfk-~dtaqfr~mek~ar~va 63 (70)
T PHA02131 25 YRFGISCWIMFKNDQVIDCTFK-NDTAQFRSMEKAARQVA 63 (70)
T ss_pred eecceEEEEEEcCCCEEEeeec-CcHHHHhhHHHHHHHHH
Confidence 3456788999999998863222 23444544555444433
No 340
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.74 E-value=1.6e+02 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=25.0
Q ss_pred CcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeC
Q 030351 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT 118 (179)
Q Consensus 79 k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~ 118 (179)
.--+.+|-.+.|+.|......+.. -...+.+|-|+.
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs 144 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGS 144 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecC
Confidence 345667778999999988776622 122488888873
No 341
>COG5575 ORC2 Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]
Probab=24.28 E-value=1.2e+02 Score=25.69 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=36.1
Q ss_pred hhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhcCCCCCcEEEEE-eCC
Q 030351 92 PCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDG 142 (179)
Q Consensus 92 ~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G 142 (179)
.|+.+...|-++++.+ ++.||++...+ .+.++|-++.+|+|-+| -+|
T Consensus 242 q~k~F~q~~feL~~~F--nLLFYG~GSK~--~fL~~f~~~~LP~~P~~~lnG 289 (535)
T COG5575 242 QCKNFHQELFELARSF--NLLFYGYGSKT--AFLRKFFPSALPCFPIFYLNG 289 (535)
T ss_pred eccccHHHHHHHhhhc--eEEEEecCchH--HHHHHHhHHhcCCcceeeecc
Confidence 5888888999999887 48888876654 67888888888886655 455
No 342
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=23.79 E-value=3.4e+02 Score=20.90 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=28.0
Q ss_pred CChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhc-CCCCCcEEEE
Q 030351 89 WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY-RIEALPTFIL 138 (179)
Q Consensus 89 wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~-~v~~~Pt~~~ 138 (179)
.|+.|..+.-.|. .+.. .+.+..||....++...+. .-...|.+.+
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~ 66 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF 66 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe
Confidence 3666665555444 4433 4888889998877666554 4555665544
No 343
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.40 E-value=1.3e+02 Score=19.42 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHHHhcCCCCCcEEEEEeCCeeee
Q 030351 123 QIADTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
..++.+++...+++++..+|.+++
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 446678888778898999998884
No 344
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.96 E-value=1.3e+02 Score=19.27 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=18.9
Q ss_pred HHHHhcCCCCCcEEEEEeCCeeee
Q 030351 123 QIADTYRIEALPTFILFKDGKPSD 146 (179)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~G~~~~ 146 (179)
..++.|++...+++++..+|.+++
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 456778997667888889998884
No 345
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=22.96 E-value=1.8e+02 Score=17.40 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=32.5
Q ss_pred EEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCC---CchHHHHhcCCCCCcEEEEEeCCe
Q 030351 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE---KYPQIADTYRIEALPTFILFKDGK 143 (179)
Q Consensus 84 ~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d---~~~~l~~~~~v~~~Pt~~~~~~G~ 143 (179)
.|+.+.|+.|...+-.++.. +-.+.+..+|.. ...++.+..-...+|++... +|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYN----GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGF 60 (75)
T ss_pred EecCCCCccHHHHHHHHHHc----CCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCC
Confidence 45667788888766555533 212555566654 23455555566788998543 443
No 346
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=22.81 E-value=3.6e+02 Score=20.72 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=55.2
Q ss_pred CCCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHh-cCCCCCcEEEEEeCCeeee---------
Q 030351 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT-YRIEALPTFILFKDGKPSD--------- 146 (179)
Q Consensus 77 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~-~~v~~~Pt~~~~~~G~~~~--------- 146 (179)
.|+..+..=||++.+.-..|...-.++.++=. .|++..++....++.... -++..+|...+..+|....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~-DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E~DldaiL~ 81 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGV-DVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEEMDLDAILA 81 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT---EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE--HHHHHH
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCC-CEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecccCCHHHHHh
Confidence 35666555567888877777776666665532 388888888776655443 4777888877766664432
Q ss_pred --------------EEeCCCCHHHHHHHHHHHHHHhcccccccc
Q 030351 147 --------------RFVSQFNIVFFVFLENLICASLQNHCLFSV 176 (179)
Q Consensus 147 --------------~~~G~~~~~~~~~i~~~i~~~~~~~~~~~~ 176 (179)
...|.+..+-++.+++++...+...+|-.+
T Consensus 82 R~P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~aGIdV~TTlNv 125 (211)
T PF02702_consen 82 RRPQVVLVDELAHTNAPGSRHKKRYQDVEELLDAGIDVYTTLNV 125 (211)
T ss_dssp H--SEEEES-TT-B--TT-SSSBHHHHHHHHHHTT-EEEEEEEG
T ss_pred cCCCEEEeCcccccCCCCCCCcccHHhHHHHHHCCCeEEEeeeH
Confidence 234666777777888888888777666543
No 347
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=22.59 E-value=81 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=17.8
Q ss_pred CCchHHHHhcC-CCCCcEEEEEeC
Q 030351 119 EKYPQIADTYR-IEALPTFILFKD 141 (179)
Q Consensus 119 d~~~~l~~~~~-v~~~Pt~~~~~~ 141 (179)
.++.+|.+++. +.|+|.+++-++
T Consensus 71 T~D~~Lr~~lr~~~GvPvi~l~~~ 94 (101)
T PF04900_consen 71 TQDKELRRRLRKIPGVPVIYLRRN 94 (101)
T ss_pred ecCHHHHHHHhcCCCCCEEEEECC
Confidence 34578999998 999999866633
No 348
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.10 E-value=94 Score=21.57 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=17.1
Q ss_pred EEEEecCCChhhccchHHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEV 103 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~ 103 (179)
+..|+-+.|..|++.+..|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567779999999988777653
No 349
>PRK10853 putative reductase; Provisional
Probab=21.56 E-value=81 Score=21.57 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=16.7
Q ss_pred EEEEecCCChhhccchHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNE 102 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~ 102 (179)
+..|+-+.|..|++....|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 345777999999998887765
No 350
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.51 E-value=3.6e+02 Score=21.62 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=56.3
Q ss_pred cccChhhHHHHHhcC-CCcEEEEEecCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCch---HHHHhcCCCCCcEEEE
Q 030351 63 KKQTFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFIL 138 (179)
Q Consensus 63 ~~~~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~~~ 138 (179)
..++.+.|.+++..- .+.-=+.++.+.|..-..=.....+++++..--+++..-+..+.. +++++++ .|++++
T Consensus 165 TT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~---~~t~~I 241 (281)
T PRK12360 165 TTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNC---PNTFHI 241 (281)
T ss_pred CCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 455566666555421 111112357899988777777788887765422333333443433 4555554 467665
Q ss_pred E----------eCCeeeeEEeCCCCHHHHH-HHHHHHH
Q 030351 139 F----------KDGKPSDRFVSQFNIVFFV-FLENLIC 165 (179)
Q Consensus 139 ~----------~~G~~~~~~~G~~~~~~~~-~i~~~i~ 165 (179)
- ++-+.++-..|.-+.+.+. .+.+.++
T Consensus 242 e~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 242 ETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred CChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3 3445677777887776664 5665554
No 351
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=21.15 E-value=1.6e+02 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=31.9
Q ss_pred CCcEEEEEecCCChhhccchHHHHHHHHHhcC-CeEEEEEeC
Q 030351 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDT 118 (179)
Q Consensus 78 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~ 118 (179)
||||++.|-..-=+.++++...+++.+++.+- .+.++.+..
T Consensus 158 GKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 158 GKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 89998877776678888999999999888763 476766653
No 352
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=21.11 E-value=1.9e+02 Score=18.25 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=13.6
Q ss_pred CcEEEEE-eCCeeeeEEe-CCCCHHHHH
Q 030351 133 LPTFILF-KDGKPSDRFV-SQFNIVFFV 158 (179)
Q Consensus 133 ~Pt~~~~-~~G~~~~~~~-G~~~~~~~~ 158 (179)
-|+++++ .+|+++.++. ...+.+.+.
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~ 69 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIE 69 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHH
Confidence 4899888 6888776642 223555554
No 353
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=20.78 E-value=95 Score=19.18 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=25.4
Q ss_pred cCCChhhccchHHHHHHHHHhcCCeEEEEEeCCCchHHHHhc---CCCCCcEEE
Q 030351 87 ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY---RIEALPTFI 137 (179)
Q Consensus 87 a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~---~v~~~Pt~~ 137 (179)
.+||++|.+.+-.+....-. +....++..+.......+ ....+|+++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 62 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE----YKTVPVEFPDIPPILGELTSGGFYTVPVIV 62 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC----CeEEEecCCCcccccccccCCCCceeCeEE
Confidence 36789998887776654332 334445544322222222 245678874
No 354
>PRK10026 arsenate reductase; Provisional
Probab=20.15 E-value=98 Score=22.03 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=17.4
Q ss_pred EEEEecCCChhhccchHHHHHH
Q 030351 82 LVDFYATWCGPCQYMAPILNEV 103 (179)
Q Consensus 82 vv~F~a~wC~~C~~~~p~l~~~ 103 (179)
+..|+-+.|..|++....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567789999999988877654
Done!