BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030352
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2IPC1|YBEY_STRPS Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain CGSP14)
GN=ybeY PE=3 SV=1
Length = 165
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|Q97R63|YBEY_STRPN Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=ybeY PE=3 SV=1
Length = 165
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|B5E486|YBEY_STRP4 Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|C1CRT3|YBEY_STRZT Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|C1CK48|YBEY_STRZP Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain P1031)
GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|C1CDW2|YBEY_STRZJ Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain JJA)
GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|Q8DQ35|YBEY_STRR6 Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|B8ZP64|YBEY_STRPJ Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|B1IBC7|YBEY_STRPI Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|C1C6U4|YBEY_STRP7 Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain 70585)
GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|Q04KW1|YBEY_STRP2 Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=ybeY PE=3 SV=1
Length = 165
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EEYGHSFEREMG----FLAVHGFLHI 135
>sp|Q02998|YH19_RHOCA Uncharacterized 104.1 kDa protein in hypE 3'region OS=Rhodobacter
capsulatus PE=4 SV=1
Length = 952
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVN 107
A+ E +E + RE +QA + +E + L EE+ A +E+ +++ SVN
Sbjct: 609 ARIEMLEAELAMTRESLQAMIEELETSNEELQATNEEMMA----SNEELQSANEELQSVN 664
Query: 108 KELKPLGHTCQKKV 121
+EL L Q+K+
Sbjct: 665 EELNSLNAEYQEKI 678
>sp|Q2UUV3|COG6_ASPOR Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cog6 PE=3 SV=1
Length = 812
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G+V E+ KR+ T+ L D MRK +++ R+ V +E
Sbjct: 144 DVQKEVVDCNAEIVRDFGKVAEQLKRIGTVITSLNQTCDEMRKHISLARQDTAPVLEEAS 203
Query: 112 PL 113
L
Sbjct: 204 TL 205
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q9NT22|EMIL3_HUMAN EMILIN-3 OS=Homo sapiens GN=EMILIN3 PE=2 SV=2
Length = 766
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 16 MLQQSSGNLSFSSSNLSKDDEEMSRSAL---TTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
+L+ + ++S S + LS + S + L T+ +E ++E + ++E+V + R++
Sbjct: 586 LLKVNLNSVSKSLTGLSDSVSQYSDAFLAANTSLDERERKVEAEVQAIQEQVSSQGSRLQ 645
Query: 73 EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNG 125
+++ +R ELE L + K + + + D+ K +GH Q+ + G
Sbjct: 646 AGHRQVLNLRGELEQLKAGVAKVASGLSRCQDTAQKLQHTVGHFDQRVAQVEG 698
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 179 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 238
Query: 107 N 107
+
Sbjct: 239 S 239
>sp|B4U460|YBEY_STREM Endoribonuclease YbeY OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=ybeY PE=3 SV=1
Length = 165
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE ++ ++Q M++Q+ L+F++ + K+D+EM+ + +T R+ +E +
Sbjct: 1 MYIEMIDETKQVSQEMMEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSHALNLEYRDTDR 60
Query: 58 ------LEVREKVQAHLGRVEEETK-RLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
LE + ++ + + E LA + +E +A + + +D +++
Sbjct: 61 PTDVISLEYKPELPIAFSQEDLELDPDLAGMLQEFDAY-------IGELFISVDKAHEQA 113
Query: 111 KPLGHTCQKKVKFNGIFLCLQWTIHV 136
+ GH+ ++++ FL + +H+
Sbjct: 114 EAYGHSFEREMG----FLAVHGFLHI 135
>sp|Q8IWB1|IPRI_HUMAN Inositol 1,4,5-trisphosphate receptor-interacting protein OS=Homo
sapiens GN=ITPRIP PE=1 SV=1
Length = 547
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 44 TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95
T EEEI +K +EK+Q R+EEE RLA +E LE +A+ R++
Sbjct: 28 ATVPENEEEIIRKMQAHQEKLQLEQLRLEEEVARLAAEKEALEQVAEEGRQQ 79
>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
Length = 368
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKE 109
+ E
Sbjct: 214 SLE 216
>sp|Q0UYL3|COG6_PHANO Conserved oligomeric Golgi complex subunit 6 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=COG6 PE=3 SV=1
Length = 694
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 35 DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK 94
D R+ T R +++K+ +E ++ G+V E+ KR+ T L + MR
Sbjct: 60 DTRGVRNTAETRRQIRLDVQKEVIECNGEIVKDFGQVAEQLKRIGTAISSLNSYCADMRS 119
Query: 95 EVAVVRKKIDSVNKE 109
+A K+ V +E
Sbjct: 120 HIAAANKETGPVLEE 134
>sp|C4L8X4|IF2_TOLAT Translation initiation factor IF-2 OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=infB PE=3 SV=1
Length = 910
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 33 KDDEEMSRSALTTFRAKEEEIEKK-KLEVREKVQAHLGRVEEETKRLATIRE 83
+ DE R A + +EEE ++K +LE + K + R+ EE +RLA E
Sbjct: 184 RADENAKREAEALRKKQEEEAQRKTELEAQRKTELEAQRIAEEARRLAVENE 235
>sp|A2QLL1|COG6_ASPNC Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=cog6 PE=3 SV=1
Length = 716
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ T+ L D MRK + R++ V +E
Sbjct: 80 DVQKEVVDSNAEIVRDFGLVAEQLKRIGTVITNLNQTCDEMRKHIVSARQETTPVLEEAS 139
Query: 112 PL 113
L
Sbjct: 140 AL 141
>sp|A5PKK7|GORAB_BOVIN RAB6-interacting golgin OS=Bos taurus GN=GORAB PE=2 SV=2
Length = 370
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 151 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 210
Query: 107 N 107
+
Sbjct: 211 S 211
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 16 MLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEET 75
+L++ +LS S LSKD +S + E+ EK K ++++ + +EE
Sbjct: 727 LLKKDFESLSEKSEKLSKDIRSISFNI--------EDAEKYKTSYQDRINSSFSTIEETE 778
Query: 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
K +A++++++EA + +++ ++ +IDS+NK+
Sbjct: 779 KHIASLKKDIEADENLLKQTIS----EIDSLNKQF 809
>sp|C8V7C6|COG6_EMENI Conserved oligomeric Golgi complex subunit 6 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cog6 PE=3 SV=1
Length = 739
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ ++ L+ D MRK + + ++ V +E
Sbjct: 81 DVQKEVVDCNAEIVRDFGNVAEQLKRIGSVISSLKETCDEMRKHIVLAKQDTTPVLEEAS 140
Query: 112 PL 113
L
Sbjct: 141 AL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,262,620
Number of Sequences: 539616
Number of extensions: 2455846
Number of successful extensions: 20898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 639
Number of HSP's that attempted gapping in prelim test: 19261
Number of HSP's gapped (non-prelim): 2168
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)