Query 030352
Match_columns 179
No_of_seqs 30 out of 32
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 12:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04949 Transcrip_act: Transc 100.0 4.5E-52 9.8E-57 335.0 10.6 108 17-124 6-114 (159)
2 TIGR01837 PHA_granule_1 poly(h 95.6 0.035 7.7E-07 42.1 5.7 62 51-114 55-116 (118)
3 PF05597 Phasin: Poly(hydroxya 95.4 0.061 1.3E-06 42.3 6.4 62 51-114 68-129 (132)
4 PF10805 DUF2730: Protein of u 90.2 0.75 1.6E-05 34.2 5.0 51 63-115 36-86 (106)
5 PF10241 KxDL: Uncharacterized 81.0 12 0.00025 27.1 7.1 60 40-110 21-80 (88)
6 TIGR00763 lon ATP-dependent pr 80.5 6.7 0.00014 37.4 7.2 62 45-107 196-260 (775)
7 PF14293 YWFCY: YWFCY protein 80.5 0.79 1.7E-05 33.0 0.9 20 132-151 24-43 (61)
8 PF01706 FliG_C: FliG C-termin 79.1 4.1 9E-05 29.6 4.3 46 60-110 56-101 (110)
9 PRK10787 DNA-binding ATP-depen 78.8 4.5 9.8E-05 39.2 5.6 62 45-107 198-262 (784)
10 PF10186 Atg14: UV radiation r 76.9 20 0.00043 28.4 7.9 75 40-114 55-139 (302)
11 TIGR01834 PHA_synth_III_E poly 76.2 5.7 0.00012 35.7 5.1 62 64-125 257-320 (320)
12 PF01920 Prefoldin_2: Prefoldi 73.0 14 0.00031 25.5 5.5 58 62-119 15-94 (106)
13 PF10186 Atg14: UV radiation r 72.4 28 0.00061 27.6 7.7 25 92-116 138-162 (302)
14 PF09325 Vps5: Vps5 C terminal 71.3 16 0.00035 28.4 6.1 55 47-101 138-202 (236)
15 PF10146 zf-C4H2: Zinc finger- 70.3 18 0.0004 30.7 6.6 46 42-91 2-47 (230)
16 PF00769 ERM: Ezrin/radixin/mo 69.4 16 0.00034 30.8 6.0 79 46-124 14-105 (246)
17 PF00804 Syntaxin: Syntaxin; 65.9 32 0.00068 22.9 5.9 55 52-110 18-72 (103)
18 PF14712 Snapin_Pallidin: Snap 61.3 53 0.0011 22.8 7.5 73 39-111 5-81 (92)
19 PRK10884 SH3 domain-containing 60.9 64 0.0014 26.9 8.0 36 78-113 130-165 (206)
20 cd07625 BAR_Vps17p The Bin/Amp 60.0 28 0.00061 29.6 5.8 60 41-100 133-195 (230)
21 PF09278 MerR-DNA-bind: MerR, 59.1 21 0.00045 23.0 3.9 31 58-88 35-65 (65)
22 PF11414 Suppressor_APC: Adeno 58.8 12 0.00026 27.7 3.0 55 60-114 29-83 (84)
23 cd07623 BAR_SNX1_2 The Bin/Amp 57.3 46 0.001 27.1 6.5 73 42-114 121-202 (224)
24 COG0466 Lon ATP-dependent Lon 56.5 40 0.00086 34.1 7.0 56 49-105 203-261 (782)
25 cd07627 BAR_Vps5p The Bin/Amph 55.9 54 0.0012 26.4 6.6 46 61-106 142-188 (216)
26 PF10226 DUF2216: Uncharacteri 55.5 40 0.00087 29.0 6.0 18 89-106 103-120 (195)
27 cd01279 HTH_HspR-like Helix-Tu 55.4 14 0.00029 26.7 2.8 32 64-95 67-98 (98)
28 PF15346 ARGLU: Arginine and g 53.9 36 0.00078 27.8 5.3 44 40-83 61-104 (149)
29 PF04678 DUF607: Protein of un 53.8 21 0.00046 28.5 3.9 22 127-150 101-122 (180)
30 cd07665 BAR_SNX1 The Bin/Amphi 53.2 36 0.00078 29.0 5.4 38 62-99 159-196 (234)
31 PF08317 Spc7: Spc7 kinetochor 52.6 1.3E+02 0.0028 25.9 8.7 71 37-107 212-289 (325)
32 TIGR00207 fliG flagellar motor 52.1 32 0.00069 30.1 5.0 47 59-111 274-321 (338)
33 PRK05686 fliG flagellar motor 51.4 33 0.00071 29.6 5.0 47 59-110 277-323 (339)
34 PRK03947 prefoldin subunit alp 51.1 50 0.0011 24.7 5.3 28 62-89 23-50 (140)
35 PF14379 Myb_CC_LHEQLE: MYB-CC 50.2 30 0.00066 24.1 3.7 30 55-84 9-45 (51)
36 PF00804 Syntaxin: Syntaxin; 50.2 49 0.0011 22.0 4.7 54 64-121 12-65 (103)
37 PF07851 TMPIT: TMPIT-like pro 48.9 88 0.0019 28.4 7.4 60 69-131 39-102 (330)
38 KOG2391 Vacuolar sorting prote 48.3 1.7E+02 0.0036 27.5 9.2 65 41-108 210-274 (365)
39 PRK03918 chromosome segregatio 47.7 79 0.0017 29.5 7.1 15 75-89 639-653 (880)
40 cd07664 BAR_SNX2 The Bin/Amphi 47.5 82 0.0018 26.6 6.6 69 42-110 131-208 (234)
41 PF09712 PHA_synth_III_E: Poly 46.7 13 0.00028 32.2 1.8 31 84-114 262-292 (293)
42 PRK02224 chromosome segregatio 46.6 62 0.0014 30.4 6.3 56 59-114 520-592 (880)
43 COG1340 Uncharacterized archae 46.0 1.1E+02 0.0023 27.7 7.4 68 40-107 33-103 (294)
44 COG3352 FlaC Putative archaeal 45.6 45 0.00097 28.0 4.7 53 58-114 50-106 (157)
45 PF07956 DUF1690: Protein of U 44.8 38 0.00082 26.9 4.0 47 58-106 34-94 (142)
46 PF06216 RTBV_P46: Rice tungro 42.3 49 0.0011 30.6 4.8 49 47-95 67-118 (389)
47 PRK11637 AmiB activator; Provi 41.9 1.4E+02 0.0029 26.4 7.3 25 94-118 110-134 (428)
48 TIGR01795 CM_mono_cladeE monof 41.7 16 0.00034 26.9 1.3 20 94-113 3-22 (94)
49 PRK01433 hscA chaperone protei 41.6 1.2E+02 0.0025 28.6 7.2 24 96-119 556-580 (595)
50 PF04523 Herpes_U30: Herpes vi 41.4 96 0.0021 31.2 7.0 93 36-128 692-796 (887)
51 PRK07194 fliG flagellar motor 41.3 59 0.0013 28.4 5.0 46 59-110 271-317 (334)
52 TIGR00606 rad50 rad50. This fa 40.6 1.3E+02 0.0028 30.6 7.8 29 93-121 908-936 (1311)
53 COG1605 PheA Chorismate mutase 39.1 21 0.00046 26.1 1.7 24 90-113 4-27 (101)
54 PF06705 SF-assemblin: SF-asse 38.8 2.1E+02 0.0046 23.4 7.7 75 44-118 59-134 (247)
55 PF11932 DUF3450: Protein of u 38.6 84 0.0018 25.8 5.3 52 62-113 52-106 (251)
56 PF07798 DUF1640: Protein of u 37.4 1.6E+02 0.0036 23.2 6.6 43 91-134 117-159 (177)
57 PF06102 DUF947: Domain of unk 37.3 1.4E+02 0.0031 24.0 6.3 43 58-100 78-120 (168)
58 KOG3335 Predicted coiled-coil 36.9 81 0.0018 26.9 5.0 63 37-118 89-152 (181)
59 COG1579 Zn-ribbon protein, pos 35.5 2E+02 0.0044 25.0 7.3 49 73-121 70-123 (239)
60 PRK11637 AmiB activator; Provi 35.5 2E+02 0.0044 25.3 7.4 45 40-84 169-216 (428)
61 TIGR01808 CM_M_hiGC-arch monof 35.4 18 0.0004 25.3 0.8 19 95-113 1-19 (74)
62 PRK07248 hypothetical protein; 34.7 16 0.00035 25.7 0.5 18 96-113 3-20 (87)
63 COG4026 Uncharacterized protei 34.3 1.9E+02 0.0042 26.2 7.2 62 49-110 143-207 (290)
64 PRK06285 chorismate mutase; Pr 34.2 20 0.00044 25.9 0.9 21 93-113 6-26 (96)
65 PF06476 DUF1090: Protein of u 34.0 1.2E+02 0.0027 23.3 5.2 51 44-111 63-113 (115)
66 PF05377 FlaC_arch: Flagella a 33.7 36 0.00078 24.0 2.1 21 90-110 17-37 (55)
67 COG4942 Membrane-bound metallo 33.3 1.5E+02 0.0033 27.9 6.6 46 61-113 61-106 (420)
68 PF13874 Nup54: Nucleoporin co 33.2 2E+02 0.0042 22.1 6.2 70 43-112 46-125 (141)
69 PRK03918 chromosome segregatio 32.9 1.7E+02 0.0036 27.4 6.8 15 95-109 460-474 (880)
70 PRK11032 hypothetical protein; 32.6 1.1E+02 0.0023 25.2 4.9 56 60-118 11-67 (160)
71 PRK14287 chaperone protein Dna 32.3 78 0.0017 27.9 4.4 48 49-96 17-64 (371)
72 KOG3654 Uncharacterized CH dom 32.1 81 0.0018 31.4 4.8 38 50-87 415-452 (708)
73 KOG0979 Structural maintenance 31.9 70 0.0015 33.5 4.5 55 59-120 255-309 (1072)
74 PRK10622 pheA bifunctional cho 31.8 26 0.00057 31.4 1.4 18 93-110 4-21 (386)
75 PRK14298 chaperone protein Dna 31.4 75 0.0016 28.1 4.2 49 48-96 17-65 (377)
76 PF15290 Syntaphilin: Golgi-lo 31.4 1.8E+02 0.004 26.7 6.6 17 92-108 122-138 (305)
77 TIGR01807 CM_P2 chorismate mut 30.8 21 0.00046 24.5 0.6 17 97-113 2-18 (76)
78 COG1536 FliG Flagellar motor s 30.8 95 0.002 27.9 4.7 49 57-110 275-323 (339)
79 PF15275 PEHE: PEHE domain; PD 30.5 99 0.0021 23.5 4.2 30 34-63 23-52 (123)
80 COG4353 Uncharacterized conser 30.2 73 0.0016 27.5 3.7 23 71-95 150-172 (192)
81 PRK13182 racA polar chromosome 30.2 1.5E+02 0.0032 24.3 5.4 46 62-110 88-141 (175)
82 TIGR01803 CM-like chorismate m 29.9 27 0.00058 24.5 0.9 17 97-113 2-18 (82)
83 PF03962 Mnd1: Mnd1 family; I 29.9 3.1E+02 0.0066 22.3 8.5 53 39-91 67-134 (188)
84 COG0370 FeoB Fe2+ transport sy 29.7 97 0.0021 30.7 4.9 72 62-145 204-294 (653)
85 PF11239 DUF3040: Protein of u 29.7 51 0.0011 23.2 2.3 19 72-91 5-23 (82)
86 PHA02675 ORF104 fusion protein 29.6 1.2E+02 0.0026 23.6 4.5 36 71-106 49-84 (90)
87 PRK01156 chromosome segregatio 29.5 3.1E+02 0.0067 26.2 8.0 33 81-114 714-746 (895)
88 PRK12595 bifunctional 3-deoxy- 29.3 31 0.00067 30.7 1.5 21 92-112 2-22 (360)
89 PF12709 Kinetocho_Slk19: Cent 29.2 63 0.0014 24.6 2.9 32 76-111 49-80 (87)
90 TIGR01799 CM_T chorismate muta 28.9 19 0.00041 25.3 0.1 17 97-113 2-18 (83)
91 PRK09239 chorismate mutase; Pr 28.8 33 0.00071 25.7 1.3 19 95-113 11-29 (104)
92 COG1340 Uncharacterized archae 28.8 2.2E+02 0.0048 25.7 6.6 34 57-90 153-186 (294)
93 TIGR02169 SMC_prok_A chromosom 28.6 3.4E+02 0.0073 25.7 8.0 18 96-113 471-488 (1164)
94 PRK14474 F0F1 ATP synthase sub 28.5 3.6E+02 0.0078 22.7 8.0 21 78-98 92-112 (250)
95 KOG3088 Secretory carrier memb 28.4 47 0.001 30.4 2.4 15 49-63 65-79 (313)
96 TIGR01805 CM_mono_grmpos monof 28.2 20 0.00043 25.0 0.0 17 97-113 2-18 (81)
97 PF13870 DUF4201: Domain of un 28.2 1.8E+02 0.0038 22.6 5.3 64 48-119 3-74 (177)
98 PF05841 Apc15p: Apc15p protei 27.7 46 0.00099 25.5 1.9 25 38-62 69-93 (125)
99 PF07889 DUF1664: Protein of u 27.4 3.1E+02 0.0068 21.7 6.6 59 51-113 57-115 (126)
100 COG4396 Mu-like prophage host- 27.3 1E+02 0.0022 26.2 4.0 66 41-115 9-86 (170)
101 TIGR00606 rad50 rad50. This fa 27.2 3E+02 0.0065 28.1 7.9 39 78-116 774-821 (1311)
102 COG2433 Uncharacterized conser 27.2 3.1E+02 0.0068 27.5 7.8 19 93-111 473-491 (652)
103 PF14988 DUF4515: Domain of un 27.1 3.6E+02 0.0079 22.4 7.2 64 46-109 27-100 (206)
104 TIGR00634 recN DNA repair prot 27.1 2.3E+02 0.0049 26.1 6.6 49 70-119 323-371 (563)
105 cd04770 HTH_HMRTR Helix-Turn-H 26.9 1E+02 0.0022 22.4 3.5 31 59-89 79-109 (123)
106 PLN03229 acetyl-coenzyme A car 26.9 2.4E+02 0.0052 28.7 7.1 74 37-110 489-613 (762)
107 PF10805 DUF2730: Protein of u 26.9 2.5E+02 0.0054 20.8 5.7 63 48-111 32-96 (106)
108 PF05529 Bap31: B-cell recepto 26.8 2E+02 0.0044 22.5 5.5 68 53-123 123-190 (192)
109 COG4847 Uncharacterized protei 26.8 1.1E+02 0.0025 24.2 4.0 38 58-95 62-99 (103)
110 KOG1161 Protein involved in va 26.6 78 0.0017 28.7 3.5 94 44-141 62-166 (310)
111 PF15035 Rootletin: Ciliary ro 26.5 1.2E+02 0.0025 24.9 4.2 22 67-88 65-93 (182)
112 smart00503 SynN Syntaxin N-ter 26.4 1.8E+02 0.0038 20.1 4.6 10 81-90 44-53 (117)
113 PF13851 GAS: Growth-arrest sp 26.3 3.4E+02 0.0073 22.3 6.9 62 37-109 20-84 (201)
114 COG1283 NptA Na+/phosphate sym 26.2 2.6E+02 0.0056 27.1 7.0 37 69-105 393-432 (533)
115 PF13166 AAA_13: AAA domain 26.2 3.6E+02 0.0078 24.7 7.6 17 99-115 457-473 (712)
116 PRK11199 tyrA bifunctional cho 26.1 30 0.00065 30.1 0.8 21 93-113 2-22 (374)
117 KOG0346 RNA helicase [RNA proc 26.1 1.5E+02 0.0032 29.3 5.3 63 16-86 395-476 (569)
118 PRK09039 hypothetical protein; 26.1 3.6E+02 0.0078 23.8 7.4 11 96-106 174-184 (343)
119 PF14000 Packaging_FI: DNA pac 26.0 1.4E+02 0.0031 23.8 4.5 37 49-90 2-45 (125)
120 PF13870 DUF4201: Domain of un 26.0 3.2E+02 0.0069 21.2 7.9 31 61-91 107-141 (177)
121 KOG0717 Molecular chaperone (D 25.9 55 0.0012 31.7 2.5 28 68-95 42-69 (508)
122 PF07321 YscO: Type III secret 25.7 2.7E+02 0.0058 22.4 6.1 59 30-88 63-121 (152)
123 PRK02224 chromosome segregatio 25.7 3.4E+02 0.0073 25.7 7.5 38 46-83 319-356 (880)
124 PF07743 HSCB_C: HSCB C-termin 25.5 1.1E+02 0.0024 20.7 3.3 10 57-66 10-19 (78)
125 TIGR01797 CM_P_1 chorismate mu 25.3 30 0.00065 24.3 0.5 17 97-113 2-18 (83)
126 PF13160 DUF3995: Protein of u 25.2 35 0.00076 26.0 0.9 10 132-141 6-15 (125)
127 PF07798 DUF1640: Protein of u 25.2 3.4E+02 0.0074 21.4 8.3 22 86-107 130-151 (177)
128 cd02677 MIT_SNX15 MIT: domain 25.1 79 0.0017 22.4 2.6 37 37-73 27-65 (75)
129 PRK14292 chaperone protein Dna 24.9 1.1E+02 0.0023 26.8 3.9 24 73-96 39-62 (371)
130 PF08766 DEK_C: DEK C terminal 24.7 1.3E+02 0.0028 19.6 3.4 30 58-87 3-32 (54)
131 TIGR01801 CM_A chorismate muta 24.6 43 0.00093 24.9 1.3 19 95-113 5-23 (102)
132 PRK14280 chaperone protein Dna 24.5 1.1E+02 0.0024 26.9 4.0 50 48-97 16-65 (376)
133 cd00179 SynN Syntaxin N-termin 24.3 1.9E+02 0.0041 21.1 4.6 27 80-106 41-67 (151)
134 PRK14276 chaperone protein Dna 24.1 1E+02 0.0023 27.1 3.7 49 48-96 16-64 (380)
135 PF05010 TACC: Transforming ac 23.9 3.7E+02 0.008 22.7 6.8 66 60-125 116-192 (207)
136 TIGR03185 DNA_S_dndD DNA sulfu 23.8 4.5E+02 0.0097 24.6 7.9 16 95-110 270-285 (650)
137 PF09551 Spore_II_R: Stage II 23.8 1.2E+02 0.0027 24.2 3.8 17 55-71 20-36 (130)
138 PF03967 PRCH: Photosynthetic 23.5 44 0.00096 27.3 1.2 18 127-144 10-27 (136)
139 TIGR01791 CM_archaeal chorisma 23.5 27 0.00058 24.2 0.0 17 97-113 2-18 (83)
140 PRK09546 zntB zinc transporter 23.5 2.1E+02 0.0045 24.1 5.3 50 71-120 159-208 (324)
141 PF15188 CCDC-167: Coiled-coil 23.4 1.4E+02 0.0031 22.4 3.9 29 80-115 36-64 (85)
142 PF04568 IATP: Mitochondrial A 23.4 1.6E+02 0.0034 22.6 4.1 17 94-110 83-99 (100)
143 PF14182 YgaB: YgaB-like prote 23.2 3.3E+02 0.0071 20.6 5.7 37 64-105 29-65 (79)
144 smart00280 KAZAL Kazal type se 23.2 28 0.00061 21.6 0.1 11 151-161 19-29 (46)
145 TIGR03321 alt_F1F0_F0_B altern 23.0 4.3E+02 0.0094 21.8 8.0 37 76-112 90-127 (246)
146 PF07352 Phage_Mu_Gam: Bacteri 23.0 3.2E+02 0.0069 20.9 5.8 24 41-64 7-30 (149)
147 TIGR02051 MerR Hg(II)-responsi 22.9 1.3E+02 0.0028 22.3 3.5 31 59-89 76-106 (124)
148 KOG0810 SNARE protein Syntaxin 22.8 2.7E+02 0.0057 24.8 6.0 69 41-109 33-104 (297)
149 PHA01750 hypothetical protein 22.8 44 0.00096 25.1 1.0 26 90-115 45-70 (75)
150 PRK07857 hypothetical protein; 22.8 48 0.001 25.6 1.3 20 94-113 28-47 (106)
151 PF13949 ALIX_LYPXL_bnd: ALIX 22.7 4.2E+02 0.009 21.5 7.2 65 42-106 23-96 (296)
152 PF13019 Telomere_Sde2: Telome 22.7 1.3E+02 0.0028 24.9 3.8 21 41-61 129-149 (162)
153 PF13874 Nup54: Nucleoporin co 22.7 1.4E+02 0.0031 22.9 3.8 55 59-117 34-88 (141)
154 PF09236 AHSP: Alpha-haemoglob 22.5 68 0.0015 24.9 2.0 26 68-93 53-78 (89)
155 PF05791 Bacillus_HBL: Bacillu 22.5 4.1E+02 0.0088 21.3 7.7 42 70-111 139-180 (184)
156 PRK07075 isochorismate-pyruvat 22.4 48 0.001 24.5 1.2 15 96-110 10-24 (101)
157 PRK14286 chaperone protein Dna 22.3 1.6E+02 0.0034 26.0 4.5 49 48-96 16-65 (372)
158 PF10174 Cast: RIM-binding pro 22.2 4.2E+02 0.0091 26.6 7.8 72 40-111 321-409 (775)
159 PF15066 CAGE1: Cancer-associa 22.1 1.4E+02 0.0031 29.1 4.5 55 67-124 454-508 (527)
160 PF12128 DUF3584: Protein of u 22.0 3.9E+02 0.0084 27.3 7.6 69 49-118 474-542 (1201)
161 PF06320 GCN5L1: GCN5-like pro 22.0 3.7E+02 0.0081 20.6 6.1 41 75-115 49-89 (121)
162 PF10212 TTKRSYEDQ: Predicted 21.9 3E+02 0.0065 26.8 6.5 78 3-90 277-358 (518)
163 PRK09514 zntR zinc-responsive 21.8 1.3E+02 0.0029 22.9 3.5 31 59-89 81-111 (140)
164 PHA02562 46 endonuclease subun 21.6 5.1E+02 0.011 22.8 7.5 18 71-88 353-370 (562)
165 PRK04098 sec-independent trans 21.6 1.7E+02 0.0037 24.2 4.3 26 77-102 55-80 (158)
166 PF08317 Spc7: Spc7 kinetochor 21.5 2.1E+02 0.0045 24.7 5.0 21 95-115 224-244 (325)
167 COG1306 Uncharacterized conser 21.4 45 0.00097 31.3 1.0 34 88-130 109-142 (400)
168 PF12840 HTH_20: Helix-turn-he 21.2 55 0.0012 21.1 1.1 13 85-97 4-16 (61)
169 KOG2185 Predicted RNA-processi 21.2 1.9E+02 0.0042 28.0 5.1 61 44-124 414-481 (486)
170 PF00261 Tropomyosin: Tropomyo 21.2 4.7E+02 0.01 21.5 7.2 42 49-90 170-211 (237)
171 PF09177 Syntaxin-6_N: Syntaxi 21.1 2.5E+02 0.0055 20.0 4.6 23 59-81 5-27 (97)
172 PRK14278 chaperone protein Dna 21.1 1.4E+02 0.0031 26.3 4.0 25 72-96 39-63 (378)
173 cd07621 BAR_SNX5_6 The Bin/Amp 21.0 3.1E+02 0.0066 23.4 5.8 60 41-108 131-191 (219)
174 cd04785 HTH_CadR-PbrR-like Hel 20.8 1.7E+02 0.0037 21.7 3.8 31 59-89 79-109 (126)
175 PF02346 Vac_Fusion: Chordopox 20.8 3.1E+02 0.0068 19.3 5.2 51 51-105 4-54 (57)
176 smart00787 Spc7 Spc7 kinetocho 20.7 5.9E+02 0.013 22.5 8.4 29 58-86 228-256 (312)
177 PRK00409 recombination and DNA 20.5 6.1E+02 0.013 25.0 8.4 20 91-110 604-623 (782)
178 TIGR02044 CueR Cu(I)-responsiv 20.4 1.6E+02 0.0034 21.9 3.5 31 59-89 79-109 (127)
179 PF09726 Macoilin: Transmembra 20.3 4.7E+02 0.01 25.8 7.6 25 36-60 455-479 (697)
180 PF08713 DNA_alkylation: DNA a 20.3 78 0.0017 24.0 1.9 17 81-97 1-17 (213)
181 PRK10227 DNA-binding transcrip 20.2 1.5E+02 0.0033 22.7 3.5 33 58-90 78-110 (135)
182 PF09766 FimP: Fms-interacting 20.1 1.6E+02 0.0034 26.1 4.1 62 65-126 90-154 (355)
183 COG2096 cob(I)alamin adenosylt 20.1 84 0.0018 26.6 2.3 22 93-114 87-108 (184)
184 TIGR02135 phoU_full phosphate 20.1 3.7E+02 0.008 19.8 6.1 76 44-119 41-127 (212)
185 KOG0018 Structural maintenance 20.0 6.8E+02 0.015 26.9 8.9 99 10-120 635-733 (1141)
186 PF01496 V_ATPase_I: V-type AT 20.0 3.3E+02 0.0071 26.0 6.3 68 37-104 204-271 (759)
No 1
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=100.00 E-value=4.5e-52 Score=334.95 Aligned_cols=108 Identities=74% Similarity=1.029 Sum_probs=104.1
Q ss_pred hcccCccccccCCCC-CchhHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 17 LQQSSGNLSFSSSNL-SKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 17 ~~~~sg~ls~~~s~~-~~~eEEmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
+++++|+++++|+++ ++++|+|||||+|+|+||||||||||||||||||+|||||||||||||+||+|||+|+||||||
T Consensus 6 ~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkE 85 (159)
T PF04949_consen 6 RVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKE 85 (159)
T ss_pred hcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 478999999988777 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccchhhhhhhhhhc
Q 030352 96 VAVVRKKIDSVNKELKPLGHTCQKKVKFN 124 (179)
Q Consensus 96 Va~VRKKID~vNReLKPLGqsCQKKEke~ 124 (179)
|++||||||+|||||||||++|||||||-
T Consensus 86 v~~vRkkID~vNreLkpl~~~cqKKEkEy 114 (159)
T PF04949_consen 86 VEMVRKKIDSVNRELKPLGQSCQKKEKEY 114 (159)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999984
No 2
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=95.62 E-value=0.035 Score=42.05 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 51 EEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
++++..--+|+++.+.+.+.+|+-..+ .+..=|..|+-|+|.||..+++|||.+...|..|.
T Consensus 55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555566777777777777776553 56778999999999999999999999999887664
No 3
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=95.37 E-value=0.061 Score=42.28 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 51 EEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
++++..--.|++++..+++++|..-.. .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566777777777777764321 13445889999999999999999999999886553
No 4
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.18 E-value=0.75 Score=34.24 Aligned_cols=51 Identities=27% Similarity=0.485 Sum_probs=34.5
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchh
Q 030352 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 63 KVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGq 115 (179)
.+.+--.++.+-.+||+.+-.+++.| |++++|..++..|..++.+++-++.
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333345555678999999999988 7777777777766666655555443
No 5
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=81.01 E-value=12 Score=27.14 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 40 RsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
...+..|.++-+++..---....++...-.+.++=|+-|. -|+++++.|.|||..++..|
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~-----------~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLK-----------EMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777765444444444333333333333333 37888899999999998765
No 6
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=80.49 E-value=6.7 Score=37.35 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHhhhhh
Q 030352 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (179)
Q Consensus 45 ~FrAKEEEIERKKmEVReKVqaqLGRvEEET---KRLA~IREELE~laDPmRKEVa~VRKKID~vN 107 (179)
.+=.+|-|+-+-+.+++++|+.++.+-..|- ..|..|++||-... .--.|++.+|+||+..+
T Consensus 196 ~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~-~~~~~~~~~~~k~~~~~ 260 (775)
T TIGR00763 196 ELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEK-DDKDELEKLKEKLEELK 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhHHHHHHHHHHhcC
Confidence 3445577777788899999999998766553 36778999995443 44579999999998766
No 7
>PF14293 YWFCY: YWFCY protein
Probab=80.48 E-value=0.79 Score=33.01 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=16.8
Q ss_pred hhhHHHHHHHhhcccccccc
Q 030352 132 WTIHVYWFFFSLGQLWHPMK 151 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (179)
-.||+|||-|..-+-||.-.
T Consensus 24 l~ih~Y~~CY~af~~wg~t~ 43 (61)
T PF14293_consen 24 LVIHFYWFCYEAFQEWGLTI 43 (61)
T ss_pred HHHHHHHHHHHHHHHhCCcH
Confidence 36999999999999998643
No 8
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=79.12 E-value=4.1 Score=29.63 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=33.8
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 60 VReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
++++|.+-++ .++=..|++|++.++....++|+..|+.|=..=|+|
T Consensus 56 ~~~~il~nms-----~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l 101 (110)
T PF01706_consen 56 LREKILSNMS-----KRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRL 101 (110)
T ss_dssp HHHHHHTTS------HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899988875 244457999999999999999999999986655444
No 9
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=78.77 E-value=4.5 Score=39.18 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=48.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHhhhhh
Q 030352 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (179)
Q Consensus 45 ~FrAKEEEIERKKmEVReKVqaqLGRvEEET---KRLA~IREELE~laDPmRKEVa~VRKKID~vN 107 (179)
.+=.+|-|+-+-+.++.++|+.++.+-..|- ..|..|++|| |..|.--.|++.+|+||+..|
T Consensus 198 ~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~el-g~~~~~~~~~~~~~~~~~~~~ 262 (784)
T PRK10787 198 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL-GEMDDAPDENEALKRKIDAAK 262 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccc-cCCCcchhHHHHHHHHHHhcC
Confidence 3446677777888899999999998776653 4688889999 455666679999999998765
No 10
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.89 E-value=20 Score=28.44 Aligned_cols=75 Identities=19% Similarity=0.384 Sum_probs=49.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhH----------HHHHHHHHHhhhhhcc
Q 030352 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR----------KEVAVVRKKIDSVNKE 109 (179)
Q Consensus 40 RsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmR----------KEVa~VRKKID~vNRe 109 (179)
..+...-++.-++.+.+-..+++++..+--++++.-++++.+++.|+....-+. +.+..+...++.....
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666677778888888888888888888888888877554433 4445555555555555
Q ss_pred cccch
Q 030352 110 LKPLG 114 (179)
Q Consensus 110 LKPLG 114 (179)
|.-+.
T Consensus 135 l~~l~ 139 (302)
T PF10186_consen 135 LSQLQ 139 (302)
T ss_pred HHHHH
Confidence 55433
No 11
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=76.16 E-value=5.7 Score=35.71 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=45.1
Q ss_pred HHHHhchhHHHHh-hHHHHHH-HHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcc
Q 030352 64 VQAHLGRVEEETK-RLATIRE-ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNG 125 (179)
Q Consensus 64 VqaqLGRvEEETK-RLA~IRE-ELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~ 125 (179)
|+.+|..+.-+-| .+.++-+ =|+.|.=|+|.||..|-|+|..+-|+++-|...-...++.+|
T Consensus 257 ~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~~ 320 (320)
T TIGR01834 257 VHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANPG 320 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3344444333332 3334433 478999999999999999999999999999888777777654
No 12
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.99 E-value=14 Score=25.45 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=40.4
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhccch----------------------hHHHHHHHHHHhhhhhcccccchhhhhh
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALADP----------------------MRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~laDP----------------------mRKEVa~VRKKID~vNReLKPLGqsCQK 119 (179)
..|.+++..++.+-+++....+||+.+.|. +.+..+.+.+.|+.+++.++.+.....+
T Consensus 15 ~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999877 2344455555555555555555544433
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.37 E-value=28 Score=27.61 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhhhhhcccccchhh
Q 030352 92 MRKEVAVVRKKIDSVNKELKPLGHT 116 (179)
Q Consensus 92 mRKEVa~VRKKID~vNReLKPLGqs 116 (179)
+...++..|+.+=.-=..+=|+.+.
T Consensus 138 l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceee
Confidence 4555555555544444446666443
No 14
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=71.31 E-value=16 Score=28.35 Aligned_cols=55 Identities=27% Similarity=0.543 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHH
Q 030352 47 RAKEEEIEKKKLEV----------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRK 101 (179)
Q Consensus 47 rAKEEEIERKKmEV----------ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRK 101 (179)
..-+.++.+++-.+ -+||......+++..+|...++.+++.+++-+++|+..--+
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~ 202 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK 202 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566655443 27888888889999999999999999999999999886543
No 15
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.32 E-value=18 Score=30.66 Aligned_cols=46 Identities=33% Similarity=0.435 Sum_probs=33.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccch
Q 030352 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADP 91 (179)
Q Consensus 42 ALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDP 91 (179)
+|.-.+.|..+.++.|-+|.. .++.+|.|.+.|.+.+.|.+.|-+-
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~----e~~~~e~ee~~L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQ----EVESLENEEKCLEEYRKEMEELLQE 47 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888887766654 4566788888888888776665444
No 16
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.45 E-value=16 Score=30.76 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHHHHHH------HHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHH-------HHhhhhhccccc
Q 030352 46 FRAKEEEIEKKKLEVRE------KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR-------KKIDSVNKELKP 112 (179)
Q Consensus 46 FrAKEEEIERKKmEVRe------KVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VR-------KKID~vNReLKP 112 (179)
++.-+++.++...++++ .+..++.++|+|..+|..-+.|++.+-.-++.+..+-- .+|+.+..++.-
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~ 93 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIAR 93 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666655554 34678889999999999999998888777776555443 488888888888
Q ss_pred chhhhhhhhhhc
Q 030352 113 LGHTCQKKVKFN 124 (179)
Q Consensus 113 LGqsCQKKEke~ 124 (179)
|-..-++|++|.
T Consensus 94 l~ee~~~ke~Ea 105 (246)
T PF00769_consen 94 LEEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888774
No 17
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=65.88 E-value=32 Score=22.94 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 52 EIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
.|+..=-+++......|...-.+ ..+++||+.|++-..+-...++++|..+....
T Consensus 18 ~i~~~~~~l~~l~~~~l~~~~~d----~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 18 KIKEKLNELRKLHKKILSSPDQD----SELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555666666544 67888899999888888888888888877764
No 18
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=61.28 E-value=53 Score=22.83 Aligned_cols=73 Identities=15% Similarity=0.384 Sum_probs=45.0
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHH---hc-cchhHHHHHHHHHHhhhhhcccc
Q 030352 39 SRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELE---AL-ADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 39 sRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE---~l-aDPmRKEVa~VRKKID~vNReLK 111 (179)
+..=+++|...=+++..+=-+++..=..-+..++.+...|..+.+-.. .| -+|-.+=+..+||++..+|.-+.
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555557788899999988887322 12 34556667777788777776554
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.92 E-value=64 Score=26.92 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 78 LA~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+.+.-.+|+.=-+-+++|++..++++|.++.++.-+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455545556888888999988888776544
No 20
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.00 E-value=28 Score=29.57 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHhhhhhhHHHHHHHHHH--H-HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHH
Q 030352 41 SALTTFRAKEEEIEKKKLE--V-REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmE--V-ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VR 100 (179)
.|-+.-+.|.+..+|-|+- + .+||..-+.-+||.+++-.+....++.+++-|+.|+...=
T Consensus 133 qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~ 195 (230)
T cd07625 133 QAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWT 195 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888873 3 5799999999999999999999999999999999987653
No 21
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=59.14 E-value=21 Score=23.04 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHhc
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEAL 88 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~l 88 (179)
-++.+-+..++..+++.-..|+.++.+|+.|
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~l 65 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQLEHL 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556778888899999999999999988764
No 22
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=58.77 E-value=12 Score=27.72 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 60 VReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
.|+=-+.||..|.+--+.|-....--+-.+|..+.-.+-.+-||-.||++|.-|.
T Consensus 29 ~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~~L~~~~~~Iqevn~~l~~l~ 83 (84)
T PF11414_consen 29 ERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHREQLEFLLAQIQEVNRCLFGLI 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCcccccccchhhHHHHHHHHHHHHHHHhc
Confidence 4677788999999999999888887778889999999999999999999987654
No 23
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=57.31 E-value=46 Score=27.12 Aligned_cols=73 Identities=11% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHhhhhhhHHHHHHHHHHH--------HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHH-HHHhhhhhccccc
Q 030352 42 ALTTFRAKEEEIEKKKLEV--------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKELKP 112 (179)
Q Consensus 42 ALS~FrAKEEEIERKKmEV--------ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~V-RKKID~vNReLKP 112 (179)
|+..++.-+.++.+++..+ -|||..----|.+...+....+++.+.+++-+++|+... +.|+...+.-|.-
T Consensus 121 a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~ 200 (224)
T cd07623 121 VWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIK 200 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554431 245555455566667788899999999999999999987 5667666655554
Q ss_pred ch
Q 030352 113 LG 114 (179)
Q Consensus 113 LG 114 (179)
..
T Consensus 201 ~l 202 (224)
T cd07623 201 YL 202 (224)
T ss_pred HH
Confidence 33
No 24
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=56.52 E-value=40 Score=34.10 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 030352 49 KEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDS 105 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGRvEEET---KRLA~IREELE~laDPmRKEVa~VRKKID~ 105 (179)
+|-++-+-..+++.||..|+.+-..|- .-|..|++||-...|.- .||+.+|+||+.
T Consensus 203 ~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~ 261 (782)
T COG0466 203 KEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEK 261 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhh
Confidence 344444566778999999998766663 46888999998776655 999999999984
No 25
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=55.89 E-value=54 Score=26.42 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=39.1
Q ss_pred HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHH-HHHhhhh
Q 030352 61 REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSV 106 (179)
Q Consensus 61 ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~V-RKKID~v 106 (179)
.+||...-..+++..++.....++.|.+++-+++||... +.|+...
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~df 188 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDF 188 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888889999999999999999999999999999987 4444433
No 26
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=55.54 E-value=40 Score=29.02 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHhhhh
Q 030352 89 ADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 89 aDPmRKEVa~VRKKID~v 106 (179)
|+-||+||+.--+||-.+
T Consensus 103 a~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567999999999988766
No 27
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.41 E-value=14 Score=26.67 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
+-+.+...+.--.++..+.+||-++|.|-|||
T Consensus 67 ~l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (98)
T cd01279 67 IIELYPQVLLLQCRSCEHATELIGCAKPCRKE 98 (98)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhcccccccC
Confidence 33556667777788899999999999999986
No 28
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=53.94 E-value=36 Score=27.82 Aligned_cols=44 Identities=36% Similarity=0.434 Sum_probs=38.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHH
Q 030352 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIRE 83 (179)
Q Consensus 40 RsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IRE 83 (179)
..+|+-++.+|++.-+++-+.-.-+...--.||++-+++|.=|.
T Consensus 61 ~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~ 104 (149)
T PF15346_consen 61 EEALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERL 104 (149)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999988999999888886543
No 29
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=53.80 E-value=21 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=16.1
Q ss_pred eEeeehhhHHHHHHHhhccccccc
Q 030352 127 FLCLQWTIHVYWFFFSLGQLWHPM 150 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~ 150 (179)
++|.||.+=.||.|+-+| |.-|
T Consensus 101 ~l~~q~~~l~rLTf~e~s--WDvM 122 (180)
T PF04678_consen 101 LLVVQFGILARLTFWEYS--WDVM 122 (180)
T ss_pred HHHHHHHHHHHHHhhccc--cchh
Confidence 567899998888777554 6544
No 30
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.22 E-value=36 Score=28.97 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=30.5
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHH
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV 99 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~V 99 (179)
||++.-..-|.+..+|..+.+.+.+.+++-||+||...
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665556667777888889999999999999999765
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.60 E-value=1.3e+02 Score=25.91 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=42.4
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHh-------ccchhHHHHHHHHHHhhhhh
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEA-------LADPMRKEVAVVRKKIDSVN 107 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~-------laDPmRKEVa~VRKKID~vN 107 (179)
+.-|..|+...++=++..+.-.+++..+++--+.+++-+...++..+|+.. --..++.||..++.+++.+=
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 444555555555444444445555666666666666666665555555443 33467888888888887764
No 32
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=52.13 E-value=32 Score=30.11 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=38.0
Q ss_pred HHHHHHHHHhchhHHHHhhH-HHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 59 EVREKVQAHLGRVEEETKRL-ATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRL-A~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
++|+++..-+. +|. ..|++|++.||-.--+||+..|+.|=.+=|+|-
T Consensus 274 e~~~~il~nmS------~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L~ 321 (338)
T TIGR00207 274 PLREKFLNNMS------QRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKLE 321 (338)
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47777777663 444 467999999999999999999999988877773
No 33
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=51.37 E-value=33 Score=29.65 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=37.7
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
++|+++.+-+. .|.=..|++||+.|+=.-..||+..|+.|=.+=|+|
T Consensus 277 ~~~~~il~nmS-----~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l 323 (339)
T PRK05686 277 ELREKFLSNMS-----KRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRL 323 (339)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 47888877774 234456899999999999999999999997776666
No 34
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.11 E-value=50 Score=24.66 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=17.3
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
+.++++++.++.....+....+.|+.|.
T Consensus 23 ~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 23 EALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666666666666665
No 35
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=50.20 E-value=30 Score=24.06 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhc-------hhHHHHhhHHHHHHH
Q 030352 55 KKKLEVREKVQAHLG-------RVEEETKRLATIREE 84 (179)
Q Consensus 55 RKKmEVReKVqaqLG-------RvEEETKRLA~IREE 84 (179)
+..|||-.+++.||. |+|+..|.|..|.|.
T Consensus 9 r~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek 45 (51)
T PF14379_consen 9 RMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEK 45 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 567899989988888 889999999888764
No 36
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=50.15 E-value=49 Score=22.00 Aligned_cols=54 Identities=15% Similarity=0.450 Sum_probs=35.0
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhh
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKV 121 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKE 121 (179)
|+..|-.++....+|...-..+-.-.| .+ ..+++.||.+..+++-+.+.|.++=
T Consensus 12 i~~~i~~i~~~~~~l~~l~~~~l~~~~---~d-~~~~~el~~l~~~i~~~~~~~~~~l 65 (103)
T PF00804_consen 12 IREDIDKIKEKLNELRKLHKKILSSPD---QD-SELKRELDELTDEIKQLFQKIKKRL 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSS---HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC---cc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556655555444444 33 6788888888888888888887653
No 37
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.86 E-value=88 Score=28.39 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=44.3
Q ss_pred chhHHHHhhHHHHHHHHHhc----cchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcceeEeee
Q 030352 69 GRVEEETKRLATIREELEAL----ADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNGIFLCLQ 131 (179)
Q Consensus 69 GRvEEETKRLA~IREELE~l----aDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~~~~~~~ 131 (179)
..+...-+||..+...|..+ .+.-++.++.+++.|......+.-....+-+| ||.||-+-
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk---NGlyL~li 102 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFLPKK---NGLYLRLI 102 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCC---CCccccee
Confidence 44555667788888877777 44567788888888888777777677777766 99998764
No 38
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.33 E-value=1.7e+02 Score=27.50 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=37.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhc
Q 030352 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK 108 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNR 108 (179)
|-+|+.+.|=..--+.+|+=--..|+-|-|-|||- +.+-+||+.+---+-.++..+-|-||.+|+
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL---~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEEL---NIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444443332223333333445677788888874 444555555555556788888888888775
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=47.68 E-value=79 Score=29.51 Aligned_cols=15 Identities=53% Similarity=0.791 Sum_probs=7.3
Q ss_pred HhhHHHHHHHHHhcc
Q 030352 75 TKRLATIREELEALA 89 (179)
Q Consensus 75 TKRLA~IREELE~la 89 (179)
..+++.+.++++.+.
T Consensus 639 ~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 639 EKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555553
No 40
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.46 E-value=82 Score=26.60 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=44.5
Q ss_pred HHhhhhhhHHHHHHHHHHH--------HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHH-HHHhhhhhccc
Q 030352 42 ALTTFRAKEEEIEKKKLEV--------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKEL 110 (179)
Q Consensus 42 ALS~FrAKEEEIERKKmEV--------ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~V-RKKID~vNReL 110 (179)
++..+++-+.++.+|+-.+ -||++.----|.+.-.+..+.+.+.|.+++-+|+||... +.|++....-|
T Consensus 131 ~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 131 CWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776442 133333333444555677888999999999999999987 55665544333
No 41
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=46.68 E-value=13 Score=32.16 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.9
Q ss_pred HHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 84 ELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
=|+.|.=|+|.||..|-|+|..+=|+++-|.
T Consensus 262 ~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 262 YLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999988763
No 42
>PRK02224 chromosome segregation protein; Provisional
Probab=46.55 E-value=62 Score=30.42 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=33.7
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchh-----------------HHHHHHHHHHhhhhhcccccch
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPM-----------------RKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPm-----------------RKEVa~VRKKID~vNReLKPLG 114 (179)
++.+.+...+-++++...++..+++|++.+-+-. ..++..+.+++..++.+++-|.
T Consensus 520 ~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667777778888887777662222 2355566666666666655554
No 43
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.98 E-value=1.1e+02 Score=27.65 Aligned_cols=68 Identities=29% Similarity=0.399 Sum_probs=50.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhchh---HHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhh
Q 030352 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRV---EEETKRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (179)
Q Consensus 40 RsALS~FrAKEEEIERKKmEVReKVqaqLGRv---EEETKRLA~IREELE~laDPmRKEVa~VRKKID~vN 107 (179)
+..++.++++-++.-.+.-|.+++++..--+- =++..-|...|.|+-.=++-.++++..++.++|-.|
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45677888888888888888888877654433 344455555566777778889999999999999655
No 44
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.56 E-value=45 Score=27.96 Aligned_cols=53 Identities=28% Similarity=0.510 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhchh----HHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 58 LEVREKVQAHLGRV----EEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 58 mEVReKVqaqLGRv----EEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
|+.-+.|..+||++ +--.|-++.|++|||.|- +++.+|-+-...|-+++-|++
T Consensus 50 mer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe----~~iKdl~~lye~Vs~d~Npf~ 106 (157)
T COG3352 50 MERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLE----ENIKDLVSLYELVSRDFNPFM 106 (157)
T ss_pred HHHHHHHHhhcccccccccchhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHH
Confidence 55566677777744 344667777777777653 556666666666666666664
No 45
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=44.80 E-value=38 Score=26.87 Aligned_cols=47 Identities=34% Similarity=0.580 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHh--cc----c--------hhHHHHHHHHHHhhhh
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEA--LA----D--------PMRKEVAVVRKKIDSV 106 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~--la----D--------PmRKEVa~VRKKID~v 106 (179)
.-|.+||.+.|-++++++. +.+.+-|+. ++ | ..-++|+.+|+|++..
T Consensus 34 ~~iq~Rva~eL~~L~~~~~--~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~ 94 (142)
T PF07956_consen 34 LHIQERVAEELKRLEEEEL--KKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEER 94 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 3577899999999998873 233333322 22 1 2456777788887743
No 46
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=42.25 E-value=49 Score=30.57 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 47 RAKEEEIEKKKLE---VREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 47 rAKEEEIERKKmE---VReKVqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
--+|-||+--+.| +||.|-----.+|+--.|||+.|+-||||-.|..|-
T Consensus 67 y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kkp 118 (389)
T PF06216_consen 67 YNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKKP 118 (389)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Confidence 3578888888876 677776666678888999999999999999998753
No 47
>PRK11637 AmiB activator; Provisional
Probab=41.88 E-value=1.4e+02 Score=26.37 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhhcccccchhhhh
Q 030352 94 KEVAVVRKKIDSVNKELKPLGHTCQ 118 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPLGqsCQ 118 (179)
++++..+++|+.....|+-+-..=.
T Consensus 110 ~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 110 ASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 48
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=41.67 E-value=16 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhcccccc
Q 030352 94 KEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPL 113 (179)
++++.+|+.||.++++|=-|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46778899999999887443
No 49
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=41.56 E-value=1.2e+02 Score=28.62 Aligned_cols=24 Identities=8% Similarity=0.286 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhccccc-chhhhhh
Q 030352 96 VAVVRKKIDSVNKELKP-LGHTCQK 119 (179)
Q Consensus 96 Va~VRKKID~vNReLKP-LGqsCQK 119 (179)
...++++++.+...|+| |.+-|.-
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (595)
T PRK01433 556 IILINNSIKEFKSKIKKSMDTKLNI 580 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35788888888888998 8777764
No 50
>PF04523 Herpes_U30: Herpes virus tegument protein U30; InterPro: IPR007611 This family is named after the human herpesvirus protein, but has been characterised in cytomegalovirus as UL47. Cytomegalovirus UL47 is a component of the tegument, which is a protein layer surrounding the viral capsid. UL47 co-precipitates with UL48 and UL69 tegument proteins, and the major capsid protein UL86. A UL47-containing complex is thought to be involved in the release of viral DNA from the disassembling virus particle [].; GO: 0019068 virion assembly
Probab=41.43 E-value=96 Score=31.16 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=82.8
Q ss_pred HHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccc----------hhHHHHHHHHHHhhh
Q 030352 36 EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALAD----------PMRKEVAVVRKKIDS 105 (179)
Q Consensus 36 EEmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laD----------PmRKEVa~VRKKID~ 105 (179)
+..-...+++|+.-=+.|+++--++-++++.-=++.+-.-.||.+|-++++.+++ +.++=+..++|=.+.
T Consensus 692 ~~~~~v~l~~f~~ti~~l~~~~~~l~~~l~~~~~~l~~~~~rl~~~l~d~~~i~~h~~~~~~~~~~~~~~~~~~~~~~~~ 771 (887)
T PF04523_consen 692 KQILSVSLPTFKSTIKALQDQCRELIDRLTQLSERLQTIYRRLLQILEDIEKIKQHPIWISFSHPNFRELKKSYLKCFSR 771 (887)
T ss_pred CcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHH
Confidence 4556667899999999999999999999999999999999999999999999887 567777888888888
Q ss_pred hhcccccchhhhhh--hhhhcceeE
Q 030352 106 VNKELKPLGHTCQK--KVKFNGIFL 128 (179)
Q Consensus 106 vNReLKPLGqsCQK--KEke~~~~~ 128 (179)
+|.=.--+..+|.. -.+.|.+|.
T Consensus 772 ~~~l~~~l~~s~~~~l~~~fn~lf~ 796 (887)
T PF04523_consen 772 LKTLESRLSNSCEYSLTKRFNRLFQ 796 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999 999998874
No 51
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=41.26 E-value=59 Score=28.36 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=35.7
Q ss_pred HHHHHHHHHhchhHHHHhhH-HHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 59 EVREKVQAHLGRVEEETKRL-ATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRL-A~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
++|++|.+-+. +|. ..||+||+.||=.-..||+..|++|=.+=|+|
T Consensus 271 e~r~~il~nmS------~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L 317 (334)
T PRK07194 271 ALRQAILRVMP------KRQAQALEAQIERLGPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHHHHHHcc------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 46666665553 444 46799999999999999999999997776666
No 52
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.56 E-value=1.3e+02 Score=30.64 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhcccccchhhhhhhh
Q 030352 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKV 121 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPLGqsCQKKE 121 (179)
..+++-+..+++.+..++.-+-.....++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1311)
T TIGR00606 908 KEQDSPLETFLEKDQQEKEELISSKETSN 936 (1311)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 53
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=39.10 E-value=21 Score=26.11 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHhhhhhcccccc
Q 030352 90 DPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 90 DPmRKEVa~VRKKID~vNReLKPL 113 (179)
.++.-+++.+|.+||.++++|=.|
T Consensus 4 ~~~~~~L~~lR~~Id~iD~~ll~L 27 (101)
T COG1605 4 TIMMEELEELREEIDEIDRELLDL 27 (101)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999988554
No 54
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.79 E-value=2.1e+02 Score=23.42 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=55.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHh-chhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhh
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHL-GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqL-GRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQ 118 (179)
..+++-...+|..-..+.++|++++ .+++.-..+|..|-..+..+.+-++.|.+..+..|+..+..|.--=..|+
T Consensus 59 E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~ 134 (247)
T PF06705_consen 59 ESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQ 134 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566677776664 46677778899999999999999999999999999998887765544443
No 55
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.57 E-value=84 Score=25.76 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=37.3
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhh---cccccc
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVN---KELKPL 113 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vN---ReLKPL 113 (179)
+...+.+..++.|...|....+.|+..-+-.++|++.+..+|+.+. ++|.|+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888888888888888888888888887777654 455554
No 56
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.44 E-value=1.6e+02 Score=23.15 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcceeEeeehhh
Q 030352 91 PMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNGIFLCLQWTI 134 (179)
Q Consensus 91 PmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~~~~~~~~~~ 134 (179)
-+|-|.+....||..+|..+.--=. =.|.+-|.--+--++|.+
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~-~lr~~iE~~K~~~lr~~~ 159 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIA-NLRTEIESLKWDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444555555566655555433211 145555554444566654
No 57
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=37.32 E-value=1.4e+02 Score=23.98 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHH
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VR 100 (179)
.+-++.++..|.+++...+.......+-|.+.+-.++|.+.|.
T Consensus 78 ~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~ 120 (168)
T PF06102_consen 78 PEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVK 120 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999998888888888877777776654
No 58
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.94 E-value=81 Score=26.94 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=39.4
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchh-
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH- 115 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGq- 115 (179)
|.+|.+... +-|||.-+.-.||.|++|+..=. =.+-|++.++.+++++...-++|+|+-+
T Consensus 89 Ey~R~~~~e-~~kee~~~~e~~elr~~~~~l~~------------------~i~~~~~~~~~L~~~l~~~~~el~~~~q~ 149 (181)
T KOG3335|consen 89 EYWRQARKE-RKKEEKRKQEIMELRLKVEKLEN------------------AIAELTKFFSQLHSKLNKPESELKPIRQA 149 (181)
T ss_pred hhHHhhhcc-hhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCccccccccccC
Confidence 456655543 34567777777888887754322 2334566677777777777778887743
Q ss_pred hhh
Q 030352 116 TCQ 118 (179)
Q Consensus 116 sCQ 118 (179)
+|.
T Consensus 150 ~p~ 152 (181)
T KOG3335|consen 150 PPN 152 (181)
T ss_pred CCC
Confidence 344
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.54 E-value=2e+02 Score=24.97 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHhccc-----hhHHHHHHHHHHhhhhhcccccchhhhhhhh
Q 030352 73 EETKRLATIREELEALAD-----PMRKEVAVVRKKIDSVNKELKPLGHTCQKKV 121 (179)
Q Consensus 73 EETKRLA~IREELE~laD-----PmRKEVa~VRKKID~vNReLKPLGqsCQKKE 121 (179)
+...|++..++-|-+..| -+-.|+...-+++.+++.+|-+|-.--.+.+
T Consensus 70 ~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 70 EIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555533333 2335667777777777777766654444433
No 60
>PRK11637 AmiB activator; Provisional
Probab=35.46 E-value=2e+02 Score=25.32 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=26.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH---HHHHHhchhHHHHhhHHHHHHH
Q 030352 40 RSALTTFRAKEEEIEKKKLEVRE---KVQAHLGRVEEETKRLATIREE 84 (179)
Q Consensus 40 RsALS~FrAKEEEIERKKmEVRe---KVqaqLGRvEEETKRLA~IREE 84 (179)
+..|..|++..++++..+.++.+ .+...+...+.+-..|...+.|
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777776643 3344555555555555544444
No 61
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=35.38 E-value=18 Score=25.35 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
|++.+|..||.++++|--|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5677899999999998654
No 62
>PRK07248 hypothetical protein; Provisional
Probab=34.70 E-value=16 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhcccccc
Q 030352 96 VAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 96 Va~VRKKID~vNReLKPL 113 (179)
++.+|+.||.++++|-.|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVAL 20 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567899999999998665
No 63
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.28 E-value=1.9e+02 Score=26.23 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhH---HHHHHHHHHhhhhhccc
Q 030352 49 KEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR---KEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmR---KEVa~VRKKID~vNReL 110 (179)
|=+|.-+-|-++++....-=|-+|+=-.||..|+-|+-.|-.-.+ -||..++||.|.+--.+
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 334455556667766666666666666677777766555444333 38999999998765543
No 64
>PRK06285 chorismate mutase; Provisional
Probab=34.21 E-value=20 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhcccccc
Q 030352 93 RKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPL 113 (179)
.++++.+|+.||.++++|-.|
T Consensus 6 ~~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888877554
No 65
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=33.95 E-value=1.2e+02 Score=23.27 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=32.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
+++.....+|+.++.+|.++= +++++. ..=||| .-|+-=++|++....||+
T Consensus 63 ~l~~e~q~ki~~~~~kV~ere--------------~eL~eA-~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 63 GLKAERQQKIAEKQQKVAERE--------------AELKEA-QAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--------------HHHHHH-HHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 356667777887777776542 122221 222788 567777778888888875
No 66
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.70 E-value=36 Score=23.97 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHhhhhhccc
Q 030352 90 DPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 90 DPmRKEVa~VRKKID~vNReL 110 (179)
+-.|+|...||+-|+.+|.-+
T Consensus 17 ~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555433
No 67
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.32 E-value=1.5e+02 Score=27.91 Aligned_cols=46 Identities=33% Similarity=0.493 Sum_probs=34.4
Q ss_pred HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 61 REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 61 ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+.+++++|...|.+..+|. .+|-..+| ++..++|+|+..|..|.-|
T Consensus 61 ~~kL~~~lk~~e~~i~~~~---~ql~~s~~----~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 61 RAKLEKQLKSLETEIASLE---AQLIETAD----DLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHh----HHHHHHhhHHHHHHHHHHH
Confidence 5688999999998866554 44444433 6778899999999988765
No 68
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.15 E-value=2e+02 Score=22.12 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=25.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHH----------HHHHHhccchhHHHHHHHHHHhhhhhccccc
Q 030352 43 LTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATI----------REELEALADPMRKEVAVVRKKIDSVNKELKP 112 (179)
Q Consensus 43 LS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~I----------REELE~laDPmRKEVa~VRKKID~vNReLKP 112 (179)
++.++.+=.+|..+-.+++..-..-..|+++--+|..+| -|-|...|=|+..|-+.++.+++.+.++|.-
T Consensus 46 ~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 46 IAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 345555555565555555444445555666655554444 4567888889999999999999999998864
No 69
>PRK03918 chromosome segregation protein; Provisional
Probab=32.94 E-value=1.7e+02 Score=27.44 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhhhcc
Q 030352 95 EVAVVRKKIDSVNKE 109 (179)
Q Consensus 95 EVa~VRKKID~vNRe 109 (179)
++..+++.|..++.+
T Consensus 460 ei~~l~~~~~~l~~~ 474 (880)
T PRK03918 460 ELKRIEKELKEIEEK 474 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 70
>PRK11032 hypothetical protein; Provisional
Probab=32.60 E-value=1.1e+02 Score=25.19 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=44.2
Q ss_pred HHHHHHHHhchhHHHHhhH-HHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhh
Q 030352 60 VREKVQAHLGRVEEETKRL-ATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (179)
Q Consensus 60 VReKVqaqLGRvEEETKRL-A~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQ 118 (179)
+=++|...|...|++.+++ ...++=+...+|=+|.|++-|. +-|.|+|+-++++-.
T Consensus 11 ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~---~ylkRDL~ef~~~~~ 67 (160)
T PRK11032 11 LVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLIT---RAVRRDLEEFARSYE 67 (160)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4467778888888777665 6667777788888999999886 678899999998765
No 71
>PRK14287 chaperone protein DnaJ; Provisional
Probab=32.30 E-value=78 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHH
Q 030352 49 KEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEV 96 (179)
-.+||.+.=...--+.+--..--.++..+.++|.+.-|.|+||.++.+
T Consensus 17 ~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~ 64 (371)
T PRK14287 17 SVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64 (371)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHH
Confidence 344554433333233333332224556788999999999999986543
No 72
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=32.14 E-value=81 Score=31.43 Aligned_cols=38 Identities=39% Similarity=0.448 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHh
Q 030352 50 EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEA 87 (179)
Q Consensus 50 EEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~ 87 (179)
|-|.|-|+-|.|.|.+..--+.|||.-|-.+||+|-+.
T Consensus 415 eae~e~kreearrkaeeer~~keee~arrefirqey~r 452 (708)
T KOG3654|consen 415 EAEKEQKREEARRKAEEERAPKEEEVARREFIRQEYER 452 (708)
T ss_pred HHHHHHHHHHHHHhhHhhhcchhhhhhHHHHHHHHHHH
Confidence 44667777888888888888889998888999999763
No 73
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.93 E-value=70 Score=33.48 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=38.1
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
++++++..+|--++++.+-++--.+|||. |++..+.+|+.+-++|.--+..|+.+
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~ 309 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELES-------EKKETRSKISQKQRELNEALAKVQEK 309 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655555555554 88899999999999988877776654
No 74
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=31.80 E-value=26 Score=31.37 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhhccc
Q 030352 93 RKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 93 RKEVa~VRKKID~vNReL 110 (179)
.++++.+|+.||.++++|
T Consensus 4 ~~~L~~lR~~ID~ID~~i 21 (386)
T PRK10622 4 ENPLLALREKISALDEKL 21 (386)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455556666666666654
No 75
>PRK14298 chaperone protein DnaJ; Provisional
Probab=31.38 E-value=75 Score=28.10 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEV 96 (179)
|-++||.+.=...--+.+--..--.+...++++|.+.-|.|+||.++.+
T Consensus 17 a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~ 65 (377)
T PRK14298 17 ASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65 (377)
T ss_pred CCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhh
Confidence 3444555433333233333333223455788999999999999986644
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.35 E-value=1.8e+02 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhhhhc
Q 030352 92 MRKEVAVVRKKIDSVNK 108 (179)
Q Consensus 92 mRKEVa~VRKKID~vNR 108 (179)
.|||+..++--||++--
T Consensus 122 ARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35555555555555533
No 77
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=30.81 E-value=21 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|..||.++++|=.|
T Consensus 2 ~~lR~~ID~iD~~iv~L 18 (76)
T TIGR01807 2 EELRNKIDAIDDRILDL 18 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999887554
No 78
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=30.75 E-value=95 Score=27.94 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 57 KLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 57 KmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
.-++||||++-.+ .|+...|++|++.++==--++|+..+|+|=.+=|.|
T Consensus 275 ~~~lrekilsnms-----kR~~e~i~~el~~~gpi~~~dve~aq~~il~~~r~l 323 (339)
T COG1536 275 SEELREKILSNMS-----KRAAEMLKEELEFLGPVRLSDVETAQKAILNIVRRL 323 (339)
T ss_pred CHHHHHHHHHhcc-----HHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 3578999988774 355667899999998756789999999997665554
No 79
>PF15275 PEHE: PEHE domain; PDB: 2Y0N_G 2Y0M_B.
Probab=30.46 E-value=99 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=20.8
Q ss_pred hhHHhhHHHHhhhhhhHHHHHHHHHHHHHH
Q 030352 34 DDEEMSRSALTTFRAKEEEIEKKKLEVREK 63 (179)
Q Consensus 34 ~eEEmsRsALS~FrAKEEEIERKKmEVReK 63 (179)
+.|.+|-.|+..=++|=||.|||+-.+...
T Consensus 23 e~EdlSDe~f~~RH~k~Ee~ERkRw~~~~~ 52 (123)
T PF15275_consen 23 EVEDLSDEAFLKRHEKYEERERKRWDWQRI 52 (123)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 478999999999999999999998776544
No 80
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=30.22 E-value=73 Score=27.49 Aligned_cols=23 Identities=52% Similarity=0.738 Sum_probs=18.0
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHH
Q 030352 71 VEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKE 95 (179)
-|++.+-|+.||+|+|.+ -.|+|
T Consensus 150 ~e~~~R~le~~r~e~enf--i~~~e 172 (192)
T COG4353 150 SEEGIRQLETIREEIENF--IIRKE 172 (192)
T ss_pred hHHHHHHHHHHHHHHHHH--Hhhcc
Confidence 367788899999999987 45555
No 81
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.19 E-value=1.5e+02 Score=24.25 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=30.7
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhccchh--------HHHHHHHHHHhhhhhccc
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALADPM--------RKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~laDPm--------RKEVa~VRKKID~vNReL 110 (179)
+-+.+|+-.|++ |++++.+-|+.+||-. |+|++.+.++|..+---|
T Consensus 88 ~lLe~~~~~l~~---ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 88 EQLEAQLNTITR---RLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555555543 7788888888888864 777777777776654433
No 82
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=29.93 E-value=27 Score=24.47 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|++||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 2 ADIREAIDRIDLALVQA 18 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999987443
No 83
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.92 E-value=3.1e+02 Score=22.35 Aligned_cols=53 Identities=36% Similarity=0.531 Sum_probs=28.5
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------------hchhHHHHhhHHHHHHHHH--hccch
Q 030352 39 SRSALTTFRAKEEEIEKKKLEVREKVQAH-------------LGRVEEETKRLATIREELE--ALADP 91 (179)
Q Consensus 39 sRsALS~FrAKEEEIERKKmEVReKVqaq-------------LGRvEEETKRLA~IREELE--~laDP 91 (179)
-+..+...+++-++++.+.-++.+++... |.+.++-.+.++++..||+ .-.||
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp 134 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDP 134 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455555666566666666666655432 3344444445555556666 44555
No 84
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=29.71 E-value=97 Score=30.66 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=44.4
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhc-----------------
Q 030352 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFN----------------- 124 (179)
Q Consensus 62 eKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~----------------- 124 (179)
+-+++.++..+ +++.+++++|+.--++ +..+++.|+..+.+ +-+.|.+.+.++
T Consensus 204 ~~~~~~~~~~~---~~~~~~~~~l~~~~~~---~~~i~~~ry~~~~~----i~~~~v~~~~~~~~slt~~iD~vllh~~l 273 (653)
T COG0370 204 ELVEAVLKEPE---KRVEELLEELSEEEGH---LLLIADARYALIER----ILRSVVKQEEEEKSSLTDKIDRVLLHPVL 273 (653)
T ss_pred HHHHHHhccch---hhHHHHHHHhhhhccc---hhHHHHHHHHHHHH----HHHHHhcccccccccHHHHhhHHHhchHH
Confidence 33555556555 7788888888876666 66777777766554 334455544332
Q ss_pred c--eeEeeehhhHHHHHHHhhcc
Q 030352 125 G--IFLCLQWTIHVYWFFFSLGQ 145 (179)
Q Consensus 125 ~--~~~~~~~~~~~~~~~~~~~~ 145 (179)
| ||+-+-|. +|+|-|++|+
T Consensus 274 G~pifl~vm~l--~F~~~f~~g~ 294 (653)
T COG0370 274 GLPIFLLVMFL--MFQLTFTIGG 294 (653)
T ss_pred HHHHHHHHHHH--HHHHHHHHcc
Confidence 2 34444554 6777788877
No 85
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.65 E-value=51 Score=23.20 Aligned_cols=19 Identities=47% Similarity=0.775 Sum_probs=15.3
Q ss_pred HHHHhhHHHHHHHHHhccch
Q 030352 72 EEETKRLATIREELEALADP 91 (179)
Q Consensus 72 EEETKRLA~IREELE~laDP 91 (179)
|+|-++|++|-+.|.. .||
T Consensus 5 e~E~r~L~eiEr~L~~-~DP 23 (82)
T PF11239_consen 5 EHEQRRLEEIERQLRA-DDP 23 (82)
T ss_pred HHHHHHHHHHHHHHHh-cCc
Confidence 7888999999999954 455
No 86
>PHA02675 ORF104 fusion protein; Provisional
Probab=29.57 E-value=1.2e+02 Score=23.57 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=29.3
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 030352 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKEVa~VRKKID~v 106 (179)
+.+.-+.++.+-.-||-=+|-.|+-.-.+-||||.-
T Consensus 49 i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDVQ 84 (90)
T PHA02675 49 ITDCCRETGARLDRLERHLETLREALLKLNTKIDVQ 84 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Confidence 455666777777788889999999999999999963
No 87
>PRK01156 chromosome segregation protein; Provisional
Probab=29.51 E-value=3.1e+02 Score=26.21 Aligned_cols=33 Identities=6% Similarity=0.300 Sum_probs=16.0
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 81 IREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 81 IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
+.++|+.+.+ ...++..+++.|+.+++.-+=|+
T Consensus 714 l~eel~~~~~-~~~~l~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 714 LSDRINDINE-TLESMKKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445544433 23345666666665555433333
No 88
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.30 E-value=31 Score=30.69 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhhhhhccccc
Q 030352 92 MRKEVAVVRKKIDSVNKELKP 112 (179)
Q Consensus 92 mRKEVa~VRKKID~vNReLKP 112 (179)
|..+++.+|++||.++++|=-
T Consensus 2 ~~~~L~~lR~~ID~ID~eIl~ 22 (360)
T PRK12595 2 MNEELEQLRKEIDEINLQLLE 22 (360)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776633
No 89
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.20 E-value=63 Score=24.56 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 76 KRLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
+++..+..++.++ ..||..+++++|..|.|=+
T Consensus 49 k~v~~L~~e~~~l----~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 49 KKVDELENENKAL----KRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3555555666554 5699999999999988743
No 90
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=28.90 E-value=19 Score=25.26 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|+.||.++++|-.|
T Consensus 2 ~~lR~~ID~ID~~il~L 18 (83)
T TIGR01799 2 EDLRGEIDGVDQELLHL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788899888887654
No 91
>PRK09239 chorismate mutase; Provisional
Probab=28.84 E-value=33 Score=25.73 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
+++.+|+.||.++++|=-|
T Consensus 11 ~L~~lR~~ID~ID~eIv~L 29 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887543
No 92
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.77 E-value=2.2e+02 Score=25.71 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccc
Q 030352 57 KLEVREKVQAHLGRVEEETKRLATIREELEALAD 90 (179)
Q Consensus 57 KmEVReKVqaqLGRvEEETKRLA~IREELE~laD 90 (179)
.+++-++++.-+-.+.+.-.-...|++++..++|
T Consensus 153 ~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 153 ALEENEKLKELKAEIDELKKKAREIHEKIQELAN 186 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444444444444444443
No 93
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=28.55 E-value=3.4e+02 Score=25.71 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhcccccc
Q 030352 96 VAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 96 Va~VRKKID~vNReLKPL 113 (179)
+..++..++.++.+|..+
T Consensus 471 l~~~~~~l~~l~~~l~~l 488 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKL 488 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 94
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=28.55 E-value=3.6e+02 Score=22.72 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHhccchhHHHHHH
Q 030352 78 LATIREELEALADPMRKEVAV 98 (179)
Q Consensus 78 LA~IREELE~laDPmRKEVa~ 98 (179)
|++.++|.+.+-.-.|.+++.
T Consensus 92 l~~A~~ea~~~~~~a~~~ie~ 112 (250)
T PRK14474 92 LNEAREDVATARDEWLEQLER 112 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655543
No 95
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.35 E-value=47 Score=30.41 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHH
Q 030352 49 KEEEIEKKKLEVREK 63 (179)
Q Consensus 49 KEEEIERKKmEVReK 63 (179)
|+.|..||..|+|.|
T Consensus 65 kq~eL~~rqeEL~Rk 79 (313)
T KOG3088|consen 65 KQAELLKKQEELRRK 79 (313)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555554444433
No 96
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=28.24 E-value=20 Score=24.99 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|+.||.++++|-.|
T Consensus 2 ~~lR~~Id~iD~~i~~L 18 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVL 18 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788999999888665
No 97
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=28.20 E-value=1.8e+02 Score=22.63 Aligned_cols=64 Identities=30% Similarity=0.397 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchh--------HHHHHHHHHHhhhhhcccccchhhhhh
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPM--------RKEVAVVRKKIDSVNKELKPLGHTCQK 119 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPm--------RKEVa~VRKKID~vNReLKPLGqsCQK 119 (179)
++..+|++-.... -..+.+|++++.- -...|.|||.+ .=|+....+|||.=|.||.-|-..|.+
T Consensus 3 ~k~~~i~~~Rl~~-~~lk~~l~k~~~q-------l~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 3 QKRNEISKLRLKN-ITLKHQLAKLEEQ-------LRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555443332 1344455555443 34455566554 468889999999999999999888754
No 98
>PF05841 Apc15p: Apc15p protein; InterPro: IPR008402 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. Members of this family are components of the anaphase-promoting complex homologous to subunit Apc15/MND2 [].; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, 0005680 anaphase-promoting complex
Probab=27.70 E-value=46 Score=25.51 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=23.1
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHHHH
Q 030352 38 MSRSALTTFRAKEEEIEKKKLEVRE 62 (179)
Q Consensus 38 msRsALS~FrAKEEEIERKKmEVRe 62 (179)
..++.|+.|.+.|+.+++++.-||-
T Consensus 69 ~~~~~l~~L~~~e~~~~~r~~~Ir~ 93 (125)
T PF05841_consen 69 SSRSSLARLSMEEQQLERRKQNIRN 93 (125)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHH
Confidence 6889999999999999999999985
No 99
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.44 E-value=3.1e+02 Score=21.67 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 51 EEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+.|..-|-++-.|++.-=+.+++-..--+.|++|+.. +|-+|+.|+-.|+.|+.-..-|
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~----v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTE----VREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444555555555556666543 3455666666666665544333
No 100
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=27.32 E-value=1e+02 Score=26.19 Aligned_cols=66 Identities=32% Similarity=0.542 Sum_probs=47.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHH--------HHHHHHHhccchhHHHHHHHHHHhhh---hhc-
Q 030352 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLA--------TIREELEALADPMRKEVAVVRKKIDS---VNK- 108 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA--------~IREELE~laDPmRKEVa~VRKKID~---vNR- 108 (179)
-|...|+.+|| |.. --.++|.+..|.+||+ .|-++--.-+.||.+|+..+-|+|.. +||
T Consensus 9 ~A~~a~q~~ee--------V~~-~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCeanrD 79 (170)
T COG4396 9 PAIEAAQDKEE--------VTA-FIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEANRD 79 (170)
T ss_pred hHHhccccHHH--------HHH-HHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCHH
Confidence 45556666554 222 2347999999999985 57888888889999999999999974 455
Q ss_pred ccccchh
Q 030352 109 ELKPLGH 115 (179)
Q Consensus 109 eLKPLGq 115 (179)
||---|+
T Consensus 80 ELTe~GK 86 (170)
T COG4396 80 ELTENGK 86 (170)
T ss_pred HHhcCCC
Confidence 3444443
No 101
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.18 E-value=3e+02 Score=28.14 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHH---Hhccchh------HHHHHHHHHHhhhhhcccccchhh
Q 030352 78 LATIREEL---EALADPM------RKEVAVVRKKIDSVNKELKPLGHT 116 (179)
Q Consensus 78 LA~IREEL---E~laDPm------RKEVa~VRKKID~vNReLKPLGqs 116 (179)
|..+..++ +.|..|+ .+|+..++++|+.+..++.+.+.+
T Consensus 774 l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~ 821 (1311)
T TIGR00606 774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821 (1311)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33444444 6666666 889999999999888888877763
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.16 E-value=3.1e+02 Score=27.53 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhhcccc
Q 030352 93 RKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLK 111 (179)
++|+.+...+|+.++++|.
T Consensus 473 ~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 473 DREIRARDRRIERLEKELE 491 (652)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777764
No 103
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=27.13 E-value=3.6e+02 Score=22.38 Aligned_cols=64 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhchhHH----HHhhHHHHHHHHHhccchhH------HHHHHHHHHhhhhhcc
Q 030352 46 FRAKEEEIEKKKLEVREKVQAHLGRVEE----ETKRLATIREELEALADPMR------KEVAVVRKKIDSVNKE 109 (179)
Q Consensus 46 FrAKEEEIERKKmEVReKVqaqLGRvEE----ETKRLA~IREELE~laDPmR------KEVa~VRKKID~vNRe 109 (179)
+...-++|++.+.++-..-..+...++. -.+-++.++.+|.+|.|=.+ +|+..+++-++.++.+
T Consensus 27 ~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e 100 (206)
T PF14988_consen 27 YIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAE 100 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.07 E-value=2.3e+02 Score=26.07 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=22.5
Q ss_pred hhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhh
Q 030352 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (179)
Q Consensus 70 RvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQK 119 (179)
-+++=..++..+++||+.+.+.-- +++.+.++++.+..++.-+++..-+
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~-~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDE-SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444322 3444444444444444444444333
No 105
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.92 E-value=1e+02 Score=22.38 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=22.4
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
++.+-++.++..++++.++|..+++.|+.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 79 EVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888888887776543
No 106
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.89 E-value=2.4e+02 Score=28.70 Aligned_cols=74 Identities=22% Similarity=0.433 Sum_probs=0.0
Q ss_pred HhhHHHHhhhhh--------hHHHHHHHHHHHHHHHHH---------HhchhHHHHh---------hHHHHHHHH-----
Q 030352 37 EMSRSALTTFRA--------KEEEIEKKKLEVREKVQA---------HLGRVEEETK---------RLATIREEL----- 85 (179)
Q Consensus 37 EmsRsALS~FrA--------KEEEIERKKmEVReKVqa---------qLGRvEEETK---------RLA~IREEL----- 85 (179)
+|-|--+|--++ --|.|++-|.|+-.|+.+ .|.-+-++++ .-+.+-+||
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Q ss_pred Hhccch-hHHHHHHHHH-------------------Hhhhhhccc
Q 030352 86 EALADP-MRKEVAVVRK-------------------KIDSVNKEL 110 (179)
Q Consensus 86 E~laDP-mRKEVa~VRK-------------------KID~vNReL 110 (179)
|+|.+| ++++|..++- ||+.+|+|+
T Consensus 569 e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei 613 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEI 613 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHH
No 107
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.86 E-value=2.5e+02 Score=20.83 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhH--HHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRL--ATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRL--A~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
|+-++|+.-.-.+ +.+..+|..+|.+-+-| +.=-..|+..=--||-++..++.+|+.+|+.+.
T Consensus 32 a~~~~~~~l~~~~-~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 32 AKREDIEKLEERL-DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666666543222 23455666677665544 222222222222345555555666665555443
No 108
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.85 E-value=2e+02 Score=22.49 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhh
Q 030352 53 IEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKF 123 (179)
Q Consensus 53 IERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke 123 (179)
+-+.-...++++.+.-..++..++--..+ ++.-.++.-.|++...+.|+..+.++.-|-.-+..-++|
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~---~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKL---LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 109
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.78 E-value=1.1e+02 Score=24.16 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
..|+-++-+.+..-|+...+..++|+++|.||--.-|+
T Consensus 62 ~ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkk 99 (103)
T COG4847 62 LIVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKK 99 (103)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777778899999999999999998544443
No 110
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=26.59 E-value=78 Score=28.73 Aligned_cols=94 Identities=23% Similarity=0.153 Sum_probs=66.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHh-hHHHHHHHHHhccchhHHHHH----------HHHHHhhhhhccccc
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETK-RLATIREELEALADPMRKEVA----------VVRKKIDSVNKELKP 112 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqLGRvEEETK-RLA~IREELE~laDPmRKEVa----------~VRKKID~vNReLKP 112 (179)
+-|-+||+|.-.+=.++++++++ |-.|..+. ....||++|..+..-|++=.. -|=||-|.--.- -
T Consensus 62 ~F~lek~~el~~Rl~~L~e~~~~--~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~--~ 137 (310)
T KOG1161|consen 62 GFQLEKESELIIRLKELEEKIDA--LSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGY--R 137 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccc--c
Confidence 35678999988899999999998 76666555 458899999999998887433 344666665541 2
Q ss_pred chhhhhhhhhhcceeEeeehhhHHHHHHH
Q 030352 113 LGHTCQKKVKFNGIFLCLQWTIHVYWFFF 141 (179)
Q Consensus 113 LGqsCQKKEke~~~~~~~~~~~~~~~~~~ 141 (179)
|-..-+.+=+..-+|---|..-|||=..+
T Consensus 138 l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~ 166 (310)
T KOG1161|consen 138 LRPYFQVRLLHQPFFTTEQLFRLVYEISI 166 (310)
T ss_pred cccHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 22334555566666677788888884443
No 111
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.51 E-value=1.2e+02 Score=24.92 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=16.8
Q ss_pred HhchhHHHHhhHHH-------HHHHHHhc
Q 030352 67 HLGRVEEETKRLAT-------IREELEAL 88 (179)
Q Consensus 67 qLGRvEEETKRLA~-------IREELE~l 88 (179)
-|+|+|||..|-+. +|+.||.+
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~ 93 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQA 93 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 78889999988887 66666543
No 112
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.41 E-value=1.8e+02 Score=20.15 Aligned_cols=10 Identities=60% Similarity=0.906 Sum_probs=3.8
Q ss_pred HHHHHHhccc
Q 030352 81 IREELEALAD 90 (179)
Q Consensus 81 IREELE~laD 90 (179)
+++.|+.+.|
T Consensus 44 ~~~~l~~~~~ 53 (117)
T smart00503 44 LREKLERLID 53 (117)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.35 E-value=3.4e+02 Score=22.26 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=41.6
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchh---HHHHHHHHHHhhhhhcc
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPM---RKEVAVVRKKIDSVNKE 109 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPm---RKEVa~VRKKID~vNRe 109 (179)
++++.=|..-+.--+||+..|. +.+.-.+.++.|..|-..|+.|. ++||+.++|.+....++
T Consensus 20 dIT~~NL~lIksLKeei~emkk-----------~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKK-----------KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776554 22334566777777777777776 56777777777655544
No 114
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=26.16 E-value=2.6e+02 Score=27.07 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=31.5
Q ss_pred chhHHHHhhHHHHHH---HHHhccchhHHHHHHHHHHhhh
Q 030352 69 GRVEEETKRLATIRE---ELEALADPMRKEVAVVRKKIDS 105 (179)
Q Consensus 69 GRvEEETKRLA~IRE---ELE~laDPmRKEVa~VRKKID~ 105 (179)
+--|+|++|.+.|-. .||-.||=+.+=++.+.||++-
T Consensus 393 ~Lse~es~r~~~iid~a~~lE~IgDiie~l~~~~~kk~~~ 432 (533)
T COG1283 393 GLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIAN 432 (533)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 345999999999876 8999999999978888888863
No 115
>PF13166 AAA_13: AAA domain
Probab=26.16 E-value=3.6e+02 Score=24.74 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=12.6
Q ss_pred HHHHhhhhhcccccchh
Q 030352 99 VRKKIDSVNKELKPLGH 115 (179)
Q Consensus 99 VRKKID~vNReLKPLGq 115 (179)
+..=+|.+|.+|+-||.
T Consensus 457 ~~~~~~~iN~~L~~~g~ 473 (712)
T PF13166_consen 457 TEPAADRINEELKRLGF 473 (712)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 34445789999999973
No 116
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.09 E-value=30 Score=30.15 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhcccccc
Q 030352 93 RKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPL 113 (179)
..+++.+|+.||.++++|--|
T Consensus 2 ~~~L~~lR~~ID~iD~~iv~L 22 (374)
T PRK11199 2 VAELTALRDQIDEVDKQLLEL 22 (374)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777666443
No 117
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=26.08 E-value=1.5e+02 Score=29.26 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=32.3
Q ss_pred hhcccCc-cccccCCCCCchhHHhhHHHHhhhhhhHHHHHHH--------HHHHHHHHHHHhchhHHHH----------h
Q 030352 16 MLQQSSG-NLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK--------KLEVREKVQAHLGRVEEET----------K 76 (179)
Q Consensus 16 ~~~~~sg-~ls~~~s~~~~~eEEmsRsALS~FrAKEEEIERK--------KmEVReKVqaqLGRvEEET----------K 76 (179)
++.+|+| .+||. +|.+.. -.+.|..+.+-|-+++.+ +|| -|.+-.=|+|+.. -
T Consensus 395 aRg~n~GtalSfv-~P~e~~----g~~~le~~~~d~~~~~~~qilqPY~f~~e---evesfryR~eD~~ravTkvAvrea 466 (569)
T KOG0346|consen 395 ARGNNKGTALSFV-SPKEEF----GKESLESILKDENRQEGRQILQPYQFRME---EVESFRYRAEDALRAVTKVAVREA 466 (569)
T ss_pred ccCCCCCceEEEe-cchHHh----hhhHHHHHHhhHHhhcCccccccccchHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777 67777 663221 123333343333233332 122 3444455555543 3
Q ss_pred hHHHHHHHHH
Q 030352 77 RLATIREELE 86 (179)
Q Consensus 77 RLA~IREELE 86 (179)
|+++|++||=
T Consensus 467 R~kEikqEll 476 (569)
T KOG0346|consen 467 RLKEIKQELL 476 (569)
T ss_pred HHHHHHHHHH
Confidence 8999999983
No 118
>PRK09039 hypothetical protein; Validated
Probab=26.05 E-value=3.6e+02 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=4.4
Q ss_pred HHHHHHHhhhh
Q 030352 96 VAVVRKKIDSV 106 (179)
Q Consensus 96 Va~VRKKID~v 106 (179)
++.+..+|+.+
T Consensus 174 i~~L~~~L~~a 184 (343)
T PRK09039 174 IADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 119
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=26.03 E-value=1.4e+02 Score=23.85 Aligned_cols=37 Identities=38% Similarity=0.603 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhch-------hHHHHhhHHHHHHHHHhccc
Q 030352 49 KEEEIEKKKLEVREKVQAHLGR-------VEEETKRLATIREELEALAD 90 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGR-------vEEETKRLA~IREELE~laD 90 (179)
|||-|.|.+ -+-.+||| +-|=+.|+|+.-|||...+|
T Consensus 2 Kee~l~RL~-----eLa~~LGRE~d~SGSaAeiaqRVAEwEEEl~~~~~ 45 (125)
T PF14000_consen 2 KEENLARLR-----ELAAQLGREPDMSGSAAEIAQRVAEWEEELDDSSD 45 (125)
T ss_pred hHHHHHHHH-----HHHHHhCcCCCccccHHHHHHHHHHHHHHHhcccC
Confidence 566665543 35678988 67788999999999995544
No 120
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.96 E-value=3.2e+02 Score=21.23 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHhchhHHHHhh----HHHHHHHHHhccch
Q 030352 61 REKVQAHLGRVEEETKR----LATIREELEALADP 91 (179)
Q Consensus 61 ReKVqaqLGRvEEETKR----LA~IREELE~laDP 91 (179)
..++...|.++..+-.+ +..++.....++.|
T Consensus 107 ~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 107 LAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 34455556666555333 33445555555555
No 121
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=55 Score=31.68 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=24.5
Q ss_pred hchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 68 LGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 68 LGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
=-|+||.|.+.+.|+..-|+|+||--+.
T Consensus 42 pd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 42 PDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred CccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 3579999999999999999999996543
No 122
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=25.72 E-value=2.7e+02 Score=22.43 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCCchhHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhc
Q 030352 30 NLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEAL 88 (179)
Q Consensus 30 ~~~~~eEEmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~l 88 (179)
.++-++=+.++.-++.|+++|-+++..--+..++|....-.+++.-+-+.+-+...+-|
T Consensus 63 ~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf 121 (152)
T PF07321_consen 63 VVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKF 121 (152)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778888888888888776655555555555544444444444444444443
No 123
>PRK02224 chromosome segregation protein; Provisional
Probab=25.71 E-value=3.4e+02 Score=25.71 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHH
Q 030352 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIRE 83 (179)
Q Consensus 46 FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IRE 83 (179)
+..+.++++....++++.+....+.+++-.+.+..+..
T Consensus 319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~ 356 (880)
T PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE 356 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554445444443333333333333
No 124
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=25.53 E-value=1.1e+02 Score=20.68 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 030352 57 KLEVREKVQA 66 (179)
Q Consensus 57 KmEVReKVqa 66 (179)
-||+||.+..
T Consensus 10 ~mE~rE~le~ 19 (78)
T PF07743_consen 10 QMELREELEE 19 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3555555544
No 125
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=25.27 E-value=30 Score=24.33 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=12.6
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|+.||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (83)
T TIGR01797 2 LALREKISAIDEKLLKL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888887443
No 126
>PF13160 DUF3995: Protein of unknown function (DUF3995)
Probab=25.23 E-value=35 Score=25.98 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=7.7
Q ss_pred hhhHHHHHHH
Q 030352 132 WTIHVYWFFF 141 (179)
Q Consensus 132 ~~~~~~~~~~ 141 (179)
=.+|+||.|-
T Consensus 6 a~~H~YWA~G 15 (125)
T PF13160_consen 6 ALLHVYWAFG 15 (125)
T ss_pred HHHHHHHHcC
Confidence 3689999864
No 127
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.16 E-value=3.4e+02 Score=21.36 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=12.5
Q ss_pred HhccchhHHHHHHHHHHhhhhh
Q 030352 86 EALADPMRKEVAVVRKKIDSVN 107 (179)
Q Consensus 86 E~laDPmRKEVa~VRKKID~vN 107 (179)
..+...+-.|++.+|..|+.+-
T Consensus 130 ~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 130 QELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666543
No 128
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=25.10 E-value=79 Score=22.40 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=27.5
Q ss_pred HhhHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhchhHH
Q 030352 37 EMSRSALTTFRA--KEEEIEKKKLEVREKVQAHLGRVEE 73 (179)
Q Consensus 37 EmsRsALS~FrA--KEEEIERKKmEVReKVqaqLGRvEE 73 (179)
..=+.||..|.. |-|-=+.+|.-||.||..-|.|+|+
T Consensus 27 ~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~ 65 (75)
T cd02677 27 EFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEE 65 (75)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344566766654 3344468899999999999999997
No 129
>PRK14292 chaperone protein DnaJ; Provisional
Probab=24.90 E-value=1.1e+02 Score=26.77 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHHHHhccchhHHHH
Q 030352 73 EETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 73 EETKRLA~IREELE~laDPmRKEV 96 (179)
++..+.+.|.+..+.|+||..+.+
T Consensus 39 ~a~~~~~~i~~Ay~vL~d~~~r~~ 62 (371)
T PRK14292 39 GAAEKFAQINEAYAVLSDAEKRAH 62 (371)
T ss_pred hHHHHHHHHHHHHHHhcchhhhhh
Confidence 455688999999999999986544
No 130
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=24.67 E-value=1.3e+02 Score=19.62 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHh
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEA 87 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~ 87 (179)
-+++..|..-|..+.=++=-..+||+.||.
T Consensus 3 ~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~ 32 (54)
T PF08766_consen 3 EEIREAIREILREADLDTVTKKQVREQLEE 32 (54)
T ss_dssp HHHHHHHHHHHTTS-GGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHhhHHHHHHHHHH
Confidence 467888888888887777777888888874
No 131
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=24.57 E-value=43 Score=24.95 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
+++.+|..||.++++|=-|
T Consensus 5 ~L~~lR~~ID~ID~eIl~L 23 (102)
T TIGR01801 5 SLEDLRAEVDQLNRQILAL 23 (102)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4667888888888887443
No 132
>PRK14280 chaperone protein DnaJ; Provisional
Probab=24.47 E-value=1.1e+02 Score=26.92 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVA 97 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa 97 (179)
|-.+||.+.=...--+.+--...-.+...+.++|-+.-|.|+||..+.+-
T Consensus 16 a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~y 65 (376)
T PRK14280 16 ASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQY 65 (376)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHH
Confidence 34455655444443444444433344556889999999999999866543
No 133
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.28 E-value=1.9e+02 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhh
Q 030352 80 TIREELEALADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 80 ~IREELE~laDPmRKEVa~VRKKID~v 106 (179)
.+++.|+.+.+-+.+=+..++.+|+.+
T Consensus 41 ~~~~~l~~~~~~~~~~~~~ik~~lk~l 67 (151)
T cd00179 41 ELKQELESLVQEIKKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444
No 134
>PRK14276 chaperone protein DnaJ; Provisional
Probab=24.08 E-value=1e+02 Score=27.13 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEV 96 (179)
|-.+||.+.=-..--+.+--..--.+++.++++|-+.-|.|+||.++.+
T Consensus 16 a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 16 ASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 3445555433333333333332223456688999999999999987543
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.94 E-value=3.7e+02 Score=22.72 Aligned_cols=66 Identities=14% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHH-----------HHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcc
Q 030352 60 VREKVQAHLGRVEEETKRLATIRE-----------ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNG 125 (179)
Q Consensus 60 VReKVqaqLGRvEEETKRLA~IRE-----------ELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~ 125 (179)
++..|+..+.||..+..|...+.. |++.+-.-..-|+..++-.+...-=.+.+|-.++.-|.|||.
T Consensus 116 Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ 192 (207)
T PF05010_consen 116 LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENE 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777655543 444444444444544444455554556677777777777763
No 136
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.85 E-value=4.5e+02 Score=24.61 Aligned_cols=16 Identities=6% Similarity=0.137 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhhhccc
Q 030352 95 EVAVVRKKIDSVNKEL 110 (179)
Q Consensus 95 EVa~VRKKID~vNReL 110 (179)
++..++...+.+.++|
T Consensus 270 ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 270 QLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 137
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=23.78 E-value=1.2e+02 Score=24.17 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhchh
Q 030352 55 KKKLEVREKVQAHLGRV 71 (179)
Q Consensus 55 RKKmEVReKVqaqLGRv 71 (179)
..|.+|||+|-+.|...
T Consensus 20 ~lKl~VRD~Vl~~l~~~ 36 (130)
T PF09551_consen 20 ALKLKVRDAVLEYLSPW 36 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999998887643
No 138
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=23.54 E-value=44 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=13.8
Q ss_pred eEeeehhhHHHHHHHhhc
Q 030352 127 FLCLQWTIHVYWFFFSLG 144 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ 144 (179)
|-..|-++-+||+||..-
T Consensus 10 ~DvAql~lyaFwiFFagL 27 (136)
T PF03967_consen 10 FDVAQLVLYAFWIFFAGL 27 (136)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 445688999999999753
No 139
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=23.54 E-value=27 Score=24.18 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhcccccc
Q 030352 97 AVVRKKIDSVNKELKPL 113 (179)
Q Consensus 97 a~VRKKID~vNReLKPL 113 (179)
+.+|+.||.++++|-.|
T Consensus 2 ~~lR~~Id~iD~~i~~L 18 (83)
T TIGR01791 2 EELRQEIEEIDKSILDL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888887654
No 140
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.46 E-value=2.1e+02 Score=24.09 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=34.0
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
+|+-..++..|.+++-.=.+|.++++..+||.+-.+.|-|.|+...+.+=
T Consensus 159 l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L 208 (324)
T PRK09546 159 IEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARL 208 (324)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455444422123678899999999999999999998877653
No 141
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.45 E-value=1.4e+02 Score=22.38 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=24.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhcccccchh
Q 030352 80 TIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 80 ~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGq 115 (179)
+-|++|| +|...|.++++.--++|+-|-+
T Consensus 36 e~R~~lE-------~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 36 EARRSLE-------KELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHH-------HHHHHHHHHhhccHHHHHHHHH
Confidence 3566676 8999999999999999998865
No 142
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.43 E-value=1.6e+02 Score=22.59 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhhccc
Q 030352 94 KEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 94 KEVa~VRKKID~vNReL 110 (179)
+|++..+|.||.+.+.|
T Consensus 83 ~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 83 EEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45555666666555443
No 143
>PF14182 YgaB: YgaB-like protein
Probab=23.20 E-value=3.3e+02 Score=20.64 Aligned_cols=37 Identities=27% Similarity=0.554 Sum_probs=23.6
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDS 105 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~ 105 (179)
|..+|--.++++ .|..|++|+- -|||+++.|++....
T Consensus 29 IE~eL~~l~~ea-~l~~i~~EI~----~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 29 IEKELKELEREA-ELHSIQEEIS----QMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344444455554 4777787774 478888888876543
No 144
>smart00280 KAZAL Kazal type serine protease inhibitors. Kazal type serine protease inhibitors and follistatin-like domains.
Probab=23.20 E-value=28 Score=21.55 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=8.9
Q ss_pred ccccccccccc
Q 030352 151 KTYDNVCHRKE 161 (179)
Q Consensus 151 ~~~~~~~~~~~ 161 (179)
+||+|.||-..
T Consensus 19 ~TY~N~C~l~~ 29 (46)
T smart00280 19 VTYSNECHLCK 29 (46)
T ss_pred CEeCCHhHHHH
Confidence 79999999543
No 145
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.04 E-value=4.3e+02 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHh-hhhhccccc
Q 030352 76 KRLATIREELEALADPMRKEVAVVRKKI-DSVNKELKP 112 (179)
Q Consensus 76 KRLA~IREELE~laDPmRKEVa~VRKKI-D~vNReLKP 112 (179)
.-+++.++|.+.+-.-.+.++..=+++. ..+..++-.
T Consensus 90 ~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~ 127 (246)
T TIGR03321 90 RLLDEAREEADEIREKWQEALRREQAALSDELRRRTGA 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777666554443 334444333
No 146
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.98 E-value=3.2e+02 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=12.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHH
Q 030352 41 SALTTFRAKEEEIEKKKLEVREKV 64 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmEVReKV 64 (179)
.||....+-..+|.+.+-..-+.+
T Consensus 7 ~al~ki~~l~~~~~~i~~~~~~~I 30 (149)
T PF07352_consen 7 WALRKIAELQREIARIEAEANDEI 30 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554444433
No 147
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.85 E-value=1.3e+02 Score=22.34 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=22.6
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
.+++-++.++..++++-..|..++..|+.+.
T Consensus 76 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 76 EMYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888887777653
No 148
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.80 E-value=2.7e+02 Score=24.76 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=52.0
Q ss_pred HHHhhhhhhHHHHHHH---HHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcc
Q 030352 41 SALTTFRAKEEEIEKK---KLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKE 109 (179)
Q Consensus 41 sALS~FrAKEEEIERK---KmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNRe 109 (179)
+.++.|=.+=++|..- .-+--++|+.+=..+--.+.....|+++|+.+.|-.++=..+||.||...-++
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~ 104 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKE 104 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888777777543 23334455555577777788888999999999999999999999998765443
No 149
>PHA01750 hypothetical protein
Probab=22.76 E-value=44 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHhhhhhcccccchh
Q 030352 90 DPMRKEVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 90 DPmRKEVa~VRKKID~vNReLKPLGq 115 (179)
|-+|+|+..+.+|+|.+-++++-+..
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44567777777788877666655543
No 150
>PRK07857 hypothetical protein; Provisional
Probab=22.75 E-value=48 Score=25.65 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhhcccccc
Q 030352 94 KEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPL 113 (179)
.++..+|+.||.++++|--|
T Consensus 28 ~~L~~lR~eID~ID~eIl~L 47 (106)
T PRK07857 28 AEIDELREEIDRLDAEILAL 47 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56788999999999987544
No 151
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.73 E-value=4.2e+02 Score=21.46 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=47.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHH---------HhccchhHHHHHHHHHHhhhh
Q 030352 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREEL---------EALADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 42 ALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREEL---------E~laDPmRKEVa~VRKKID~v 106 (179)
+++.+...-.++.....++++.+..--..+++|..--...|... ..++.++|.++..+|+-++.+
T Consensus 23 g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A 96 (296)
T PF13949_consen 23 GIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQA 96 (296)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHH
Confidence 46667777778888888888887777777777777777777765 445678888888777665543
No 152
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=22.70 E-value=1.3e+02 Score=24.94 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=14.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHH
Q 030352 41 SALTTFRAKEEEIEKKKLEVR 61 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmEVR 61 (179)
.+|..+.|++.|-|+++.|-+
T Consensus 129 k~l~~~~~~~~er~k~~~e~~ 149 (162)
T PF13019_consen 129 KKLAEWLEKKPEREKKEKEKR 149 (162)
T ss_pred HHHHHHHhcChhHHHHHHHHH
Confidence 356778888888886665544
No 153
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.69 E-value=1.4e+02 Score=22.88 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=28.0
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhh
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsC 117 (179)
+++.++.+|-.-++.-..+|..|.+.|+.| ++--.....||..+-+.-.-|.+-|
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L----~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEEL----QKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888899998888877 2224455566666555544444443
No 154
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=22.49 E-value=68 Score=24.85 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=21.1
Q ss_pred hchhHHHHhhHHHHHHHHHhccchhH
Q 030352 68 LGRVEEETKRLATIREELEALADPMR 93 (179)
Q Consensus 68 LGRvEEETKRLA~IREELE~laDPmR 93 (179)
.|--.|--|-|.++++||.+||.|.=
T Consensus 53 ~GeqqeqdrAlqel~qeL~tla~pFL 78 (89)
T PF09236_consen 53 TGEQQEQDRALQELQQELNTLANPFL 78 (89)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777889999999999999963
No 155
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.46 E-value=4.1e+02 Score=21.26 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=21.7
Q ss_pred hhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 70 RvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
.....++-|...-.+|...=.-.--++..+++.|+.+|.+++
T Consensus 139 ~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 139 KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 344455555554444444433334566777777777776654
No 156
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=22.40 E-value=48 Score=24.51 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhhccc
Q 030352 96 VAVVRKKIDSVNKEL 110 (179)
Q Consensus 96 Va~VRKKID~vNReL 110 (179)
++.+|+.||.++++|
T Consensus 10 L~~lR~~ID~ID~~i 24 (101)
T PRK07075 10 LDDIREAIDRLDRDI 24 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666665
No 157
>PRK14286 chaperone protein DnaJ; Provisional
Probab=22.29 E-value=1.6e+02 Score=26.04 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchh-HHHHhhHHHHHHHHHhccchhHHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRV-EEETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRv-EEETKRLA~IREELE~laDPmRKEV 96 (179)
|-++||.+.=-..--|.+--...- .++..+.++|-+.-|.|+||.++.+
T Consensus 16 a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 16 ANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344556554444444444444332 3455789999999999999986543
No 158
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=22.21 E-value=4.2e+02 Score=26.64 Aligned_cols=72 Identities=33% Similarity=0.532 Sum_probs=45.8
Q ss_pred HHHHhhh----hhhHHHHHHHHHHH-------------HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHH
Q 030352 40 RSALTTF----RAKEEEIEKKKLEV-------------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKK 102 (179)
Q Consensus 40 RsALS~F----rAKEEEIERKKmEV-------------ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKK 102 (179)
|.=|..+ .|++.+.+.---+| =+|-++++-.+++|--|++-=-++|-.+-|-.=.+|..+++|
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 56776666554444 345566666677776666543344444445555689999999
Q ss_pred hhhhhcccc
Q 030352 103 IDSVNKELK 111 (179)
Q Consensus 103 ID~vNReLK 111 (179)
||.+...|+
T Consensus 401 ie~Lee~l~ 409 (775)
T PF10174_consen 401 IENLEEQLR 409 (775)
T ss_pred HHHHHHHHH
Confidence 998887764
No 159
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=22.11 E-value=1.4e+02 Score=29.10 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=38.7
Q ss_pred HhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhc
Q 030352 67 HLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFN 124 (179)
Q Consensus 67 qLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~ 124 (179)
-|+.-|||..||.+.+-|||.- ++-=+.-+.+--+.+-.|+-.|-.-.||.||+|
T Consensus 454 ~LskKeeeverLQ~lkgelEka---t~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 454 TLSKKEEEVERLQQLKGELEKA---TTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677788999999999999843 333334444444556667777778888988887
No 160
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.01 E-value=3.9e+02 Score=27.26 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhh
Q 030352 49 KEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQ 118 (179)
.+.+++....++. ...+.+..++.+-..+..-+++.+.=-+..+.++..++-.|+.+++.|-|-..|-.
T Consensus 474 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~ 542 (1201)
T PF12128_consen 474 ADKRLEQAQEQQN-QAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLL 542 (1201)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH
Confidence 3444444433333 33445555555555555555555554566788999999999999999999877643
No 161
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=21.98 E-value=3.7e+02 Score=20.64 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchh
Q 030352 75 TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 75 TKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGq 115 (179)
.|+|..=-.+|..-+.-.+|.....=+-+|..|..||-||-
T Consensus 49 qk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGD 89 (121)
T PF06320_consen 49 QKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGD 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444333456666666677777777788888888888774
No 162
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.87 E-value=3e+02 Score=26.78 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCCchhHHhhHHHHhh-hhhhHHHHHHHHHHHHH-HHHHHhch--hHHHHhhH
Q 030352 3 IEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTT-FRAKEEEIEKKKLEVRE-KVQAHLGR--VEEETKRL 78 (179)
Q Consensus 3 ~~~~~~~~~~~~m~~~~~sg~ls~~~s~~~~~eEEmsRsALS~-FrAKEEEIERKKmEVRe-KVqaqLGR--vEEETKRL 78 (179)
+-+||+.--|-..+ +.|.-.+..+ --||-+|.- ..--.|.|++..+|=-. ..++||+. .|.|++|+
T Consensus 277 ~~~p~~~svpy~~a-~~n~ril~ss---------tes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRi 346 (518)
T PF10212_consen 277 LKKPCPESVPYEEA-LANRRILLSS---------TESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRI 346 (518)
T ss_pred hcCCCCccCChHHH-HhhhHHHhhh---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555555 3343333333 112333321 22335677777776444 55677875 58999999
Q ss_pred HHHHHHHHhccc
Q 030352 79 ATIREELEALAD 90 (179)
Q Consensus 79 A~IREELE~laD 90 (179)
+++-.++.....
T Consensus 347 adLekevak~~v 358 (518)
T PF10212_consen 347 ADLEKEVAKGQV 358 (518)
T ss_pred HHHHHHHhcccc
Confidence 988888755443
No 163
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=21.81 E-value=1.3e+02 Score=22.90 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
++.+-++.++..++++...|..++..|+.+.
T Consensus 81 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 81 EVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888777887777776554
No 164
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.62 E-value=5.1e+02 Score=22.85 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=6.9
Q ss_pred hHHHHhhHHHHHHHHHhc
Q 030352 71 VEEETKRLATIREELEAL 88 (179)
Q Consensus 71 vEEETKRLA~IREELE~l 88 (179)
+++-.+++..+..|++.|
T Consensus 353 i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 353 LITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444333
No 165
>PRK04098 sec-independent translocase; Provisional
Probab=21.55 E-value=1.7e+02 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHH
Q 030352 77 RLATIREELEALADPMRKEVAVVRKK 102 (179)
Q Consensus 77 RLA~IREELE~laDPmRKEVa~VRKK 102 (179)
+++++++|+...-+++...++.||+.
T Consensus 55 ~~~elk~e~~k~k~~l~~~~~~l~~~ 80 (158)
T PRK04098 55 NIEEIKEEALKYKKEFESAVESLKKK 80 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788888888888888888888883
No 166
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.48 E-value=2.1e+02 Score=24.66 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhhhcccccchh
Q 030352 95 EVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPLGq 115 (179)
+++..|++++.++.+|.-|-.
T Consensus 224 ~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 167
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=45 Score=31.32 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=25.3
Q ss_pred ccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcceeEee
Q 030352 88 LADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNGIFLCL 130 (179)
Q Consensus 88 laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~~~~~~ 130 (179)
+.||.-|-+..|+|=||+ .+..||-||||||+..
T Consensus 109 s~d~~~~~~~sv~~f~Di---------~~~iKkaKe~giY~IA 142 (400)
T COG1306 109 SSDEINKYTKSVNKFKDI---------EPVIKKAKENGIYAIA 142 (400)
T ss_pred ccchhhhhhhcccccccc---------HHHHHHHHhcCeEEEE
Confidence 457777777777776554 4678999999999854
No 168
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=21.21 E-value=55 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.5
Q ss_pred HHhccchhHHHHH
Q 030352 85 LEALADPMRKEVA 97 (179)
Q Consensus 85 LE~laDPmRKEVa 97 (179)
+.+|+||.|.+|=
T Consensus 4 ~~aL~~p~R~~Il 16 (61)
T PF12840_consen 4 FKALSDPTRLRIL 16 (61)
T ss_dssp HHHHTSHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 5789999998763
No 169
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=21.21 E-value=1.9e+02 Score=28.00 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhch-------hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhh
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHLGR-------VEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqLGR-------vEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqs 116 (179)
.+|+ -|+||+|+|.+.+ ||+..|.| .+.-+.||+ .|||.|.++|++...|.+-
T Consensus 414 ~lv~-~edeirrlkrdm~-klkq~l~RN~gd~v~s~~lqe~L~------------------ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 414 ALVE-YEDEIRRLKRDML-KLKQMLNRNKGDLVVSEALQERLK------------------EVRKALASLLAQEAALSNE 473 (486)
T ss_pred HHHH-HHHHHHHHHHHHH-HHHHHHhhccccHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhHH
Confidence 4444 4788998887765 67777766 333444444 4566666667777777776
Q ss_pred hhhhhhhc
Q 030352 117 CQKKVKFN 124 (179)
Q Consensus 117 CQKKEke~ 124 (179)
-++++-++
T Consensus 474 q~sr~s~k 481 (486)
T KOG2185|consen 474 QVSRESEK 481 (486)
T ss_pred Hhhhhhhh
Confidence 66666544
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.20 E-value=4.7e+02 Score=21.45 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccc
Q 030352 49 KEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALAD 90 (179)
Q Consensus 49 KEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laD 90 (179)
+++..|.+-..+.+++...-.|+|..-++...+-.++..|-|
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555444444443
No 171
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.15 E-value=2.5e+02 Score=20.00 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=15.8
Q ss_pred HHHHHHHHHhchhHHHHhhHHHH
Q 030352 59 EVREKVQAHLGRVEEETKRLATI 81 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~I 81 (179)
.|++-|+.+|.+++.-..+...+
T Consensus 5 ~v~~ev~~sl~~l~~~~~~~~~~ 27 (97)
T PF09177_consen 5 VVKDEVQSSLDRLESLYRRWQRL 27 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777888888877665555444
No 172
>PRK14278 chaperone protein DnaJ; Provisional
Probab=21.08 E-value=1.4e+02 Score=26.29 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHhccchhHHHH
Q 030352 72 EEETKRLATIREELEALADPMRKEV 96 (179)
Q Consensus 72 EEETKRLA~IREELE~laDPmRKEV 96 (179)
.+.+.++.+|-+.-|.|+||.++.+
T Consensus 39 ~~a~~~f~~i~~Ay~vL~d~~~r~~ 63 (378)
T PRK14278 39 EEAQEKFKEISVAYEVLSDPEKRRI 63 (378)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhhh
Confidence 4456789999999999999987644
No 173
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=21.00 E-value=3.1e+02 Score=23.36 Aligned_cols=60 Identities=15% Similarity=0.366 Sum_probs=41.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHH-Hhhhhhc
Q 030352 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRK-KIDSVNK 108 (179)
Q Consensus 41 sALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRK-KID~vNR 108 (179)
.|+..|++-+...++++.- -++|+ -+|. ...+-++..|.|++-+|+|+....+ |+....+
T Consensus 131 ral~~~q~A~k~L~KaR~k-~~~v~----~AE~---~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~ 191 (219)
T cd07621 131 RCLANYENANKNLEKARAK-NKDVH----AAEA---AQQEACEKFESMSESAKQELLDFKTRRVAAFRK 191 (219)
T ss_pred HHHHHHHHHHHHHHHhHhc-hhhHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999988852 22222 2333 5578889999999999999987643 3443333
No 174
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.84 E-value=1.7e+02 Score=21.72 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=22.6
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
++..-++.++-.++++..+|..++..|+.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 79 EADAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777788888888888887776554
No 175
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=20.81 E-value=3.1e+02 Score=19.31 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 030352 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDS 105 (179)
Q Consensus 51 EEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~ 105 (179)
+.|+.+=+.+.+.+..-..+-+.-+.++.. ||.=.|-+||=+=.+=||||.
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~R----LE~H~ETlRk~mv~L~kKiDv 54 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKR----LEHHIETLRKYMVILAKKIDV 54 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 456666677766666555555555555444 566667789999999999996
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.67 E-value=5.9e+02 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHH
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELE 86 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE 86 (179)
.++++.++.--+++++-+...+++++++-
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666553
No 177
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.51 E-value=6.1e+02 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHhhhhhccc
Q 030352 91 PMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 91 PmRKEVa~VRKKID~vNReL 110 (179)
...+++..++++++.+.+.+
T Consensus 604 ~~~~~~~~~~~~l~~~~~~~ 623 (782)
T PRK00409 604 VKAHELIEARKRLNKANEKK 623 (782)
T ss_pred hhHHHHHHHHHHHHHhhhhh
Confidence 34556666666666655543
No 178
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=20.39 E-value=1.6e+02 Score=21.86 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=23.2
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
++.+.++.++..++++-..|..+++.|+.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02044 79 DVKARTLEKVAEIERKISELQSMRDQLEALA 109 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888777653
No 179
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.29 E-value=4.7e+02 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=17.5
Q ss_pred HHhhHHHHhhhhhhHHHHHHHHHHH
Q 030352 36 EEMSRSALTTFRAKEEEIEKKKLEV 60 (179)
Q Consensus 36 EEmsRsALS~FrAKEEEIERKKmEV 60 (179)
|...++.|+..|.+-|+++.|-.++
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888887765554
No 180
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.26 E-value=78 Score=24.03 Aligned_cols=17 Identities=59% Similarity=0.745 Sum_probs=12.3
Q ss_pred HHHHHHhccchhHHHHH
Q 030352 81 IREELEALADPMRKEVA 97 (179)
Q Consensus 81 IREELE~laDPmRKEVa 97 (179)
|+.+|+.++||-+++.-
T Consensus 1 i~~~L~~~~d~~~a~~~ 17 (213)
T PF08713_consen 1 IRAELEALADPKYAKFM 17 (213)
T ss_dssp HHHHHHHC--HHHHHHH
T ss_pred CHHHHHhcCCHHHHHHH
Confidence 78999999999887753
No 181
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.24 E-value=1.5e+02 Score=22.69 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhchhHHHHhhHHHHHHHHHhccc
Q 030352 58 LEVREKVQAHLGRVEEETKRLATIREELEALAD 90 (179)
Q Consensus 58 mEVReKVqaqLGRvEEETKRLA~IREELE~laD 90 (179)
.++++.+..++..+++.-.+|...+.+|..+.+
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888888775543
No 182
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.14 E-value=1.6e+02 Score=26.07 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=43.2
Q ss_pred HHHhchhHH---HHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhhhhhcce
Q 030352 65 QAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKVKFNGI 126 (179)
Q Consensus 65 qaqLGRvEE---ETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKKEke~~~ 126 (179)
+.+|.|++- +-++|..-++||+.-=.-+-+|+..-+++++.+...|+-|-.++.-=...-|+
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 344555553 34678888888888777788888888888888888888777666544443333
No 183
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=20.13 E-value=84 Score=26.57 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhhcccccch
Q 030352 93 RKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPLG 114 (179)
...|..+.+.||..|.+|.||-
T Consensus 87 ~e~v~~LE~~id~y~~~l~~l~ 108 (184)
T COG2096 87 EEDVKRLEKRIDAYNAELPPLK 108 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc
Confidence 4789999999999999999884
No 184
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=20.07 E-value=3.7e+02 Score=19.81 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=43.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhch---hHHHHhhH---HHHHHHHHhccchhHHHHHHHHHHh-----hhhhccccc
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHLGR---VEEETKRL---ATIREELEALADPMRKEVAVVRKKI-----DSVNKELKP 112 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqLGR---vEEETKRL---A~IREELE~laDPmRKEVa~VRKKI-----D~vNReLKP 112 (179)
.....+|++|.+...++...+-..|.+ .+++.+++ -.|--.||.+||=...=+..+.+.. +.+-++|..
T Consensus 41 ~~i~~~e~~id~l~~~i~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~lErigD~~~~ia~~~~~~~~~~~~~~~~~el~~ 120 (212)
T TIGR02135 41 RKVIEDDDQINALEVKIEEKCLRLIALQQPVAKDLRLIISIIKISSDLERIGDYAVNIAKRALRLKEEDAKPKHLEELEK 120 (212)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHH
Confidence 345567888888888887764444442 23344433 3455789999987655222233222 344566666
Q ss_pred chhhhhh
Q 030352 113 LGHTCQK 119 (179)
Q Consensus 113 LGqsCQK 119 (179)
+++.|.+
T Consensus 121 m~~~v~~ 127 (212)
T TIGR02135 121 MGKLALK 127 (212)
T ss_pred HHHHHHH
Confidence 6666654
No 185
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.05 E-value=6.8e+02 Score=26.86 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred cccchhhhcccCccccccCCCCCchhHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 10 QNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 10 ~~~~~m~~~~~sg~ls~~~s~~~~~eEEmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
+.++-|+ +++|| +.||+++=..-+.-=-.+...=.||..++++|+. |+.++..+| .||+-..-+|+.+-
T Consensus 635 ~ksGlms-GG~s~------~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~-v~~~i~~le---~~~~~~~~~~~~~k 703 (1141)
T KOG0018|consen 635 HKSGLMS-GGSSG------AKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSS-VESKIHGLE---MRLKYSKLDLEQLK 703 (1141)
T ss_pred eccceec-CCccC------CCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred chhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 90 DPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
+-.=..--.++.-.+-.+ ++.|=-..|+++
T Consensus 704 ~~l~~~~~El~~~~~~i~-~~~p~i~~i~r~ 733 (1141)
T KOG0018|consen 704 RSLEQNELELQRTESEID-EFGPEISEIKRK 733 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH-hhCchHHHHHHH
No 186
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.02 E-value=3.3e+02 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=32.9
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhh
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKID 104 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID 104 (179)
+--+..+..|.+..-++..-..+..+.++.--.+.++-.+.++.+.++|..+.+-.+.++..++-.++
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355667777777666544444444444444455555555666666666655555555554444433
Done!