Query 030352
Match_columns 179
No_of_seqs 30 out of 32
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 20:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ecm_A Endo-oxabicyclic transi 71.6 1.2 4.2E-05 31.3 0.9 24 88-113 1-24 (109)
2 3na7_A HP0958; flagellar bioge 67.7 18 0.00061 28.6 7.0 59 48-106 104-162 (256)
3 3pkr_A FLIG, flagellar motor s 64.8 6.8 0.00023 32.7 4.3 51 59-114 217-267 (279)
4 4fhr_B Flagellar motor switch 64.6 7.4 0.00025 31.0 4.3 48 59-111 160-207 (216)
5 2ke4_A CDC42-interacting prote 59.5 18 0.00063 26.1 5.2 52 61-112 17-80 (98)
6 1ez3_A Syntaxin-1A; three heli 58.9 7.6 0.00026 26.9 3.0 65 45-110 9-77 (127)
7 3euj_A Chromosome partition pr 58.5 3.9 0.00013 36.1 1.8 44 71-114 232-281 (483)
8 1fio_A SSO1 protein; four heli 57.4 16 0.00056 26.8 4.8 29 80-108 46-74 (196)
9 3hjl_A Flagellar motor switch 56.6 11 0.00039 31.8 4.3 48 59-111 273-320 (329)
10 1ez3_A Syntaxin-1A; three heli 56.2 46 0.0016 22.8 7.3 53 64-120 17-69 (127)
11 3oja_B Anopheles plasmodium-re 53.8 83 0.0028 26.3 9.0 22 92-113 542-563 (597)
12 2e7s_A RAB guanine nucleotide 51.5 82 0.0028 24.4 8.1 74 37-111 11-113 (135)
13 3oja_A Leucine-rich immune mol 49.3 52 0.0018 27.1 7.0 54 52-105 378-446 (487)
14 2i1j_A Moesin; FERM, coiled-co 45.6 6.9 0.00024 35.0 1.3 61 64-124 368-435 (575)
15 3oja_B Anopheles plasmodium-re 45.3 65 0.0022 26.9 7.1 15 93-107 550-564 (597)
16 2d8d_A Aroag, phospho-2-dehydr 45.1 6.9 0.00024 26.5 0.9 19 95-113 4-22 (90)
17 1jzp_A Skeletal dihydropydrine 44.7 12 0.00041 22.4 1.8 15 45-59 3-17 (26)
18 2zqm_A Prefoldin beta subunit 43.5 55 0.0019 22.2 5.4 61 63-123 24-99 (117)
19 2eqb_B RAB guanine nucleotide 43.4 97 0.0033 22.9 7.9 37 74-110 45-92 (97)
20 2gtv_X CM, chorismate mutase; 42.9 7.1 0.00024 28.3 0.8 17 95-111 4-20 (104)
21 3rmi_A Chorismate mutase prote 42.8 9.7 0.00033 27.6 1.5 22 92-113 10-31 (114)
22 3ljc_A ATP-dependent protease 41.3 62 0.0021 25.0 6.0 42 45-86 205-249 (252)
23 1a73_A Intron 3 (I-PPO) encode 40.8 2.8 9.5E-05 34.0 -1.8 41 121-161 64-104 (163)
24 3r2p_A Apolipoprotein A-I; amp 40.5 83 0.0028 23.7 6.4 61 57-120 91-152 (185)
25 3iv1_A Tumor susceptibility ge 37.2 46 0.0016 23.8 4.2 50 60-109 12-68 (78)
26 2ve7_C Kinetochore protein NUF 37.2 47 0.0016 26.9 4.8 57 59-119 138-194 (250)
27 3a5t_A Transcription factor MA 37.1 22 0.00074 26.5 2.6 65 48-117 31-95 (107)
28 1q08_A Zn(II)-responsive regul 37.1 43 0.0015 22.0 3.9 30 59-88 39-68 (99)
29 2ctr_A DNAJ homolog subfamily 36.9 37 0.0013 22.5 3.5 48 48-95 19-66 (88)
30 3hd7_B Syntaxin-1A; membrane p 36.5 66 0.0023 22.8 5.1 80 37-125 7-86 (109)
31 2vkl_A RV0948C/MT0975; helical 36.3 11 0.00036 26.3 0.8 23 91-113 9-31 (90)
32 1fxk_A Prefoldin; archaeal pro 34.6 98 0.0034 20.6 5.5 60 63-122 19-93 (107)
33 2dfs_A Myosin-5A; myosin-V, in 33.3 1.5E+02 0.0053 28.5 8.4 34 80-113 1016-1049(1080)
34 1ybz_A Chorismate mutase; cons 31.0 18 0.00063 25.4 1.3 19 95-113 18-36 (91)
35 1s94_A S-syntaxin; three helix 30.9 98 0.0034 22.8 5.4 35 77-111 75-109 (180)
36 1q06_A Transcriptional regulat 30.8 48 0.0016 23.8 3.5 31 59-89 79-109 (135)
37 1go4_E MAD1 (mitotic arrest de 29.8 25 0.00086 26.0 1.9 20 92-111 10-29 (100)
38 2wuj_A Septum site-determining 28.7 54 0.0019 21.2 3.2 29 78-110 29-57 (57)
39 2wt7_B Transcription factor MA 28.2 1.3E+02 0.0046 21.7 5.5 60 53-117 26-85 (90)
40 3he5_A Synzip1; heterodimeric 28.0 24 0.00083 23.6 1.4 14 91-104 35-48 (49)
41 1ci6_A Transcription factor AT 27.9 1.3E+02 0.0044 19.7 5.2 36 68-103 25-60 (63)
42 3pbf_A Pulmonary surfactant-as 27.9 24 0.00084 24.0 1.5 26 91-117 13-38 (148)
43 1hdj_A Human HSP40, HDJ-1; mol 27.1 49 0.0017 21.1 2.8 23 73-95 40-62 (77)
44 3na7_A HP0958; flagellar bioge 27.0 2.3E+02 0.0078 22.2 8.9 36 71-106 134-169 (256)
45 3ret_A Salicylate biosynthesis 25.6 21 0.00073 24.7 0.9 19 95-113 9-27 (101)
46 4emc_A Monopolin complex subun 25.3 53 0.0018 26.9 3.2 30 94-124 41-70 (190)
47 1wvt_A Hypothetical protein ST 25.1 1.1E+02 0.0036 23.9 4.8 23 93-115 77-99 (172)
48 2kho_A Heat shock protein 70; 24.4 2.5E+02 0.0087 24.4 7.6 82 29-115 505-600 (605)
49 2ctp_A DNAJ homolog subfamily 24.4 55 0.0019 20.9 2.6 24 72-95 43-66 (78)
50 3jxy_A Alkylpurine DNA glycosy 24.4 40 0.0014 25.9 2.3 17 79-95 7-23 (232)
51 4e81_A Chaperone protein DNAK; 24.0 2.5E+02 0.0087 21.7 7.0 21 95-115 192-212 (219)
52 3axj_A GM27569P, translin; tra 23.9 1.7E+02 0.0058 23.6 6.0 69 44-113 22-90 (249)
53 3trt_A Vimentin; cytoskeleton, 23.9 89 0.0031 20.4 3.6 65 41-112 9-74 (77)
54 1t06_A Hypothetical protein; s 23.9 43 0.0015 26.1 2.4 19 78-96 3-21 (235)
55 1yke_B RNA polymerase II holoe 22.9 62 0.0021 24.8 3.1 50 70-119 86-135 (151)
56 3oja_A Leucine-rich immune mol 22.9 2.2E+02 0.0077 23.3 6.6 23 91-113 453-475 (487)
57 2p2u_A HOST-nuclease inhibitor 22.8 72 0.0025 24.4 3.4 34 71-104 18-51 (171)
58 2g2d_A ATP:cobalamin adenosylt 22.4 1.6E+02 0.0055 23.2 5.5 22 93-114 94-115 (193)
59 2ej7_A HCG3 gene; HCG3 protein 22.0 80 0.0027 20.3 3.1 24 72-95 47-70 (82)
60 4g63_A Cytosolic IMP-GMP speci 21.9 1.1E+02 0.0039 27.2 5.0 29 89-117 370-398 (470)
61 3hnw_A Uncharacterized protein 21.5 1.1E+02 0.0038 22.9 4.2 51 63-113 79-129 (138)
62 2lw1_A ABC transporter ATP-bin 21.5 70 0.0024 21.8 2.8 23 66-88 63-85 (89)
63 2zhy_A ATP:COB(I)alamin adenos 21.5 1.7E+02 0.006 22.8 5.5 22 93-114 86-107 (183)
64 2cug_A Mkiaa0962 protein; DNAJ 20.8 72 0.0025 21.1 2.7 48 48-95 29-76 (88)
65 1nog_A Conserved hypothetical 20.8 1.5E+02 0.0051 23.1 4.9 21 94-114 81-101 (177)
66 2f3o_A PFLD, PFL2, pyruvate fo 20.8 1.2E+02 0.0043 28.4 5.2 50 71-133 206-257 (776)
67 1s94_A S-syntaxin; three helix 20.8 64 0.0022 23.8 2.7 53 64-120 48-100 (180)
68 1sum_B Phosphate transport sys 20.6 2.2E+02 0.0074 21.2 5.6 52 46-98 45-102 (235)
69 2ccy_A Cytochrome C; electron 20.6 37 0.0013 24.3 1.3 44 75-118 68-119 (128)
70 4i0x_B ESAT-6-like protein MAB 20.5 44 0.0015 22.5 1.6 30 85-114 16-45 (103)
71 3gwk_C SAG1039, putative uncha 20.4 45 0.0016 21.6 1.6 28 86-113 14-41 (98)
72 1woz_A 177AA long conserved hy 20.1 1.6E+02 0.0056 22.8 5.0 21 94-114 80-100 (177)
73 3rkv_A Putative peptidylprolyl 20.1 1.9E+02 0.0064 18.7 4.7 50 61-110 103-152 (162)
74 2idx_A COB(I)yrinic acid A,C-d 20.0 1.7E+02 0.0057 23.2 5.1 21 94-114 94-114 (196)
No 1
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=71.57 E-value=1.2 Score=31.30 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=15.7
Q ss_pred ccchhHHHHHHHHHHhhhhhcccccc
Q 030352 88 LADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 88 laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
|+|| .+++.+|+.||.++++|=-|
T Consensus 1 M~~~--~~L~~lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 1 MTSE--NPLLALREKISALDEKLLAL 24 (109)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHH
Confidence 5666 35888899999998887554
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=67.65 E-value=18 Score=28.59 Aligned_cols=59 Identities=8% Similarity=0.210 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~v 106 (179)
.+-...|..-.++-+++...-..+++...+|+.+.++|+..-.-...+++.+.+.++.+
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555444444444444444433
No 3
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=64.82 E-value=6.8 Score=32.69 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=40.4
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
+||+|+++-+.. |.=..|++|||.||-.-.+||+..||+|=.+=|.|---|
T Consensus 217 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~G 267 (279)
T 3pkr_A 217 DLTDKFLNNMSS-----RAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKG 267 (279)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 678999887752 344568999999999889999999999988777664333
No 4
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=64.58 E-value=7.4 Score=31.00 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=36.9
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
+||+++..-+. .|.=+.|++|+|.+|---.+||+..||.|=.+=|+|-
T Consensus 160 e~~e~il~nmS-----~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~ 207 (216)
T 4fhr_B 160 ELKEKIFKNMS-----KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLE 207 (216)
T ss_dssp HHHHHHHTTSC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888877764 2344578999999997777999999999976656553
No 5
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.49 E-value=18 Score=26.13 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=38.3
Q ss_pred HHHHHHHhchhHHHHhhHHHHHHHHH----------hccchhH--HHHHHHHHHhhhhhccccc
Q 030352 61 REKVQAHLGRVEEETKRLATIREELE----------ALADPMR--KEVAVVRKKIDSVNKELKP 112 (179)
Q Consensus 61 ReKVqaqLGRvEEETKRLA~IREELE----------~laDPmR--KEVa~VRKKID~vNReLKP 112 (179)
|.++++.|.+++.+-.+-..=|+-|+ .||||+- .+++.+.++||.+.-+|.=
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777776 4688875 5677888999998887743
No 6
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=58.92 E-value=7.6 Score=26.90 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchhHHH----HhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEE----TKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 45 ~FrAKEEEIERKKmEVReKVqaqLGRvEEE----TKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
.|-.+=++|..-=..++..|. .|+..=++ +.....++++|+.+.+-..+=...|+.+|+.+.++.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~-~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVE-EVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554555444444444443 23322222 223346888999998888888888888888776554
No 7
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=58.46 E-value=3.9 Score=36.13 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=25.6
Q ss_pred hHHHHhhHHHHHHHHH------hccchhHHHHHHHHHHhhhhhcccccch
Q 030352 71 VEEETKRLATIREELE------ALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 71 vEEETKRLA~IREELE------~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
+++-...|.+.|.||- .++--+|+.+..++++|+.+|+.|+-+.
T Consensus 232 ~q~~~~~~~~~r~~~~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~ 281 (483)
T 3euj_A 232 FQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIA 281 (483)
T ss_dssp HHC-----------------CHHHHHHHHHHHHHHHHHHHHHGGGGSSCC
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444467777788875 5667899999999999999999998554
No 8
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=57.41 E-value=16 Score=26.81 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=16.4
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhc
Q 030352 80 TIREELEALADPMRKEVAVVRKKIDSVNK 108 (179)
Q Consensus 80 ~IREELE~laDPmRKEVa~VRKKID~vNR 108 (179)
.++++|+.+.+-+.+=+..++++|..+..
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666665555555555555555443
No 9
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=56.64 E-value=11 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.372 Sum_probs=38.8
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
+||+|++.-+.. |.=..|++|||.||-.-.+||+..||+|=.+=|.|-
T Consensus 273 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 273 DIKQKFLSNMSK-----RAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999887752 334568999999998889999999999987777664
No 10
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=56.17 E-value=46 Score=22.84 Aligned_cols=53 Identities=11% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
|+..|..++....+|...-+++ |+.|-. ...++..+|.+..+++-++..|..+
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~--L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~ 69 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAI--LASPNP--DEKTKEELEELMSDIKKTANKVRSK 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555543 443332 2235555555555555555544433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.85 E-value=83 Score=26.28 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhhhhcccccc
Q 030352 92 MRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 92 mRKEVa~VRKKID~vNReLKPL 113 (179)
.++|+..++++|+...+.+.=|
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHH
Confidence 3455555555555554444433
No 12
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.49 E-value=82 Score=24.38 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=46.9
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHH------------------HHHHHHHhccch-------
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLA------------------TIREELEALADP------- 91 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA------------------~IREELE~laDP------- 91 (179)
--+|..|+.-+++..+.|+-+-+.. .....|.-++.|..+|. .|-.|||.|+--
T Consensus 11 ~~~r~~l~~~~~~~~~le~l~~~l~-~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~ 89 (135)
T 2e7s_A 11 NKSLKTIASQKAAIENYNQLKEDYN-TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 89 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888776643 33345555666655554 477788876532
Q ss_pred ----hHHHHHHHHHHhhhhhcccc
Q 030352 92 ----MRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 92 ----mRKEVa~VRKKID~vNReLK 111 (179)
-|++-+.+-+|.+.+-++|+
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666777666655553
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.31 E-value=52 Score=27.15 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhchhHH---------------HHhhHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 030352 52 EIEKKKLEVREKVQAHLGRVEE---------------ETKRLATIREELEALADPMRKEVAVVRKKIDS 105 (179)
Q Consensus 52 EIERKKmEVReKVqaqLGRvEE---------------ETKRLA~IREELE~laDPmRKEVa~VRKKID~ 105 (179)
++.+..-+.+..++...+++|. -.++...+..|+|..=+-+++++...+..|+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (487)
T 3oja_A 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHH
Confidence 3445556677778888888873 33444445555555555566666666655544
No 14
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.56 E-value=6.9 Score=34.99 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHH-------HHHHhhhhhcccccchhhhhhhhhhc
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAV-------VRKKIDSVNKELKPLGHTCQKKVKFN 124 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~-------VRKKID~vNReLKPLGqsCQKKEke~ 124 (179)
+..++.++|+|+.+|+.-+.|+|.+-.-++.+..+ +..+|+.+..++.-|..--++||+|.
T Consensus 368 l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~ 435 (575)
T 2i1j_A 368 LEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSET 435 (575)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888777776665554332 44555555555555655555555553
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.34 E-value=65 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhhh
Q 030352 93 RKEVAVVRKKIDSVN 107 (179)
Q Consensus 93 RKEVa~VRKKID~vN 107 (179)
++.....++++..++
T Consensus 550 e~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 550 EKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHH
Confidence 333333333333333
No 16
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=45.12 E-value=6.9 Score=26.52 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
+++.+|+.||.++++|--|
T Consensus 4 ~L~~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888899888887654
No 17
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=44.67 E-value=12 Score=22.35 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHH
Q 030352 45 TFRAKEEEIEKKKLE 59 (179)
Q Consensus 45 ~FrAKEEEIERKKmE 59 (179)
+=+++|||++|+||-
T Consensus 3 aqKekeEe~kr~k~~ 17 (26)
T 1jzp_A 3 AQKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999964
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.46 E-value=55 Score=22.21 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHHhccch---------------hHHHHHHHHHHhhhhhcccccchhhhhhhhhh
Q 030352 63 KVQAHLGRVEEETKRLATIREELEALADP---------------MRKEVAVVRKKIDSVNKELKPLGHTCQKKVKF 123 (179)
Q Consensus 63 KVqaqLGRvEEETKRLA~IREELE~laDP---------------mRKEVa~VRKKID~vNReLKPLGqsCQKKEke 123 (179)
.+.+++..++.+-+.+.-.-+||+.+.|. .-.=+..|-++++.+..+++-|-......+++
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888889999988653 22234556777777777777777666665554
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.41 E-value=97 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHhhHHHHHHHHHhccch-----------hHHHHHHHHHHhhhhhccc
Q 030352 74 ETKRLATIREELEALADP-----------MRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 74 ETKRLA~IREELE~laDP-----------mRKEVa~VRKKID~vNReL 110 (179)
.-+.+..|-.|||.|+-- -|++-+.+-+|.+.+-.+|
T Consensus 45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567788888877532 2666666666666655554
No 20
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=42.86 E-value=7.1 Score=28.34 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhcccc
Q 030352 95 EVAVVRKKIDSVNKELK 111 (179)
Q Consensus 95 EVa~VRKKID~vNReLK 111 (179)
+++.+|++||.++++|-
T Consensus 4 ~L~~lR~~ID~ID~~il 20 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKIL 20 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999999987
No 21
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=42.81 E-value=9.7 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhhhhcccccc
Q 030352 92 MRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 92 mRKEVa~VRKKID~vNReLKPL 113 (179)
+-.+++.+|.+||.++++|--|
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4456888889999988887655
No 22
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=41.27 E-value=62 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchhHHH---HhhHHHHHHHHH
Q 030352 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEE---TKRLATIREELE 86 (179)
Q Consensus 45 ~FrAKEEEIERKKmEVReKVqaqLGRvEEE---TKRLA~IREELE 86 (179)
.+=.+|-||-+-+.+++.+|+.++..--.| -..|..|++||-
T Consensus 205 ~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 205 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567777778888999999988877666 445777777774
No 23
>1a73_A Intron 3 (I-PPO) encoded endonuclease; complex (homing endonuclease/DNA), zinc, DNA binding, protein folding, hydrolase/DNA complex; HET: DNA; 1.80A {Physarum polycephalum} SCOP: d.4.1.3 PDB: 1a74_A* 1ipp_A* 1evw_A* 2o6m_A 1evx_A 1cz0_A 1cyq_A
Probab=40.78 E-value=2.8 Score=34.01 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=31.4
Q ss_pred hhhcceeEeeehhhHHHHHHHhhcccccccccccccccccc
Q 030352 121 VKFNGIFLCLQWTIHVYWFFFSLGQLWHPMKTYDNVCHRKE 161 (179)
Q Consensus 121 Eke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (179)
+|-+|+|.-.||..|..|||+-.+..=-|--+-.-.||++.
T Consensus 64 ~ki~g~~~~~~i~~H~l~~~~e~~~~~~~~~~vSHLCHNg~ 104 (163)
T 1a73_A 64 YKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCHNTR 104 (163)
T ss_dssp EEEEETTEEEEEETTTGGGTTSCSEETTEEEEEEETTCCTT
T ss_pred EEEccEEEEEEeeceeEEEEeecCCCCcccceeeeeecCCC
Confidence 67899999999999999999988866333333345788874
No 24
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=40.53 E-value=83 Score=23.67 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhchhHHH-HhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 57 KLEVREKVQAHLGRVEEE-TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 57 KmEVReKVqaqLGRvEEE-TKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
--++|.++.-.++.+-.- .+.+..+|+.|+-+++-+|. .|++.++.+...|.|++..-+.|
T Consensus 91 lee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~---~~~~~~e~Lr~~L~p~~e~lr~~ 152 (185)
T 3r2p_A 91 LEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE---GARQKLHELQEKLSPLGEEMRDR 152 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTTTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666666655544322 34566777777766666665 56788899999999998775544
No 25
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.20 E-value=46 Score=23.77 Aligned_cols=50 Identities=28% Similarity=0.465 Sum_probs=27.6
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHHHH-------HhccchhHHHHHHHHHHhhhhhcc
Q 030352 60 VREKVQAHLGRVEEETKRLATIREEL-------EALADPMRKEVAVVRKKIDSVNKE 109 (179)
Q Consensus 60 VReKVqaqLGRvEEETKRLA~IREEL-------E~laDPmRKEVa~VRKKID~vNRe 109 (179)
+|.+++..++..--|-.-|..+.+|| +.|-.-+-.|.+.+.|-|+.+-+-
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554 445555666666666666654433
No 26
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=37.17 E-value=47 Score=26.91 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhh
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQK 119 (179)
+....+...+.+.|+-..|+.++.+|+.. +..+++.++..++..+-++-|..+.|..
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~----le~~Ie~Lk~e~~e~~te~~p~~k~~~q 194 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQE----ALMKLERLEKEVDEDTTVTIPSAVYVAQ 194 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH----HHHSCC-------------CTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 33444566667788888888888888766 5677778888888888888898887764
No 27
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=37.15 E-value=22 Score=26.51 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhh
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsC 117 (179)
+..-+|-.++--.+.|+-||--| +||++++ ++||.--+-+..|++.+..-.+.+.+|+.-|.+-|
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR----~rk~~~~-~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~ 95 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCR----VKRVTQK-EELEKQKAELQQEVEKLASENASMKLELDALRSKY 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788899998877 5788765 56764333334444444444444444444444444
No 28
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=37.15 E-value=43 Score=22.03 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=22.8
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEAL 88 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~l 88 (179)
++++-+..|+..++++-.+|..++..|+.+
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888887777653
No 29
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.90 E-value=37 Score=22.52 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
|-.+||.+.=...--+.+--.+.-++...+...|.+--+.|.||.++.
T Consensus 19 as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 19 ASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp CCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 345566554444433433333334566778899999999999997643
No 30
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=36.47 E-value=66 Score=22.82 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=52.2
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhh
Q 030352 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (179)
Q Consensus 37 EmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqs 116 (179)
..+|+||+..+++++||.+--..+.| +-+=-+-||.+=+|=..+-|..-.-|....-.++..|++|+--. .
T Consensus 7 ~~a~~~l~~i~eR~~eI~~Ie~~I~e--------L~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~-~ 77 (109)
T 3hd7_B 7 SISKQALSEIETRHSEIIKLENSIRE--------LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV-K 77 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 57889999999999998765444443 33334456666666666667777777778888888888887643 3
Q ss_pred hhhhhhhcc
Q 030352 117 CQKKVKFNG 125 (179)
Q Consensus 117 CQKKEke~~ 125 (179)
.||+=+...
T Consensus 78 yqk~~rkk~ 86 (109)
T 3hd7_B 78 YQSKARRKK 86 (109)
T ss_dssp HHHHHHHHH
T ss_pred HHHhccCcc
Confidence 466555443
No 31
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=36.30 E-value=11 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHhhhhhcccccc
Q 030352 91 PMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 91 PmRKEVa~VRKKID~vNReLKPL 113 (179)
|.-.+++.+|+.||.++++|--|
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~L 31 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILAL 31 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHH
Confidence 44446888999999999988655
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.61 E-value=98 Score=20.65 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHHhccchh---------------HHHHHHHHHHhhhhhcccccchhhhhhhhh
Q 030352 63 KVQAHLGRVEEETKRLATIREELEALADPM---------------RKEVAVVRKKIDSVNKELKPLGHTCQKKVK 122 (179)
Q Consensus 63 KVqaqLGRvEEETKRLA~IREELE~laDPm---------------RKEVa~VRKKID~vNReLKPLGqsCQKKEk 122 (179)
.+.+++..++.+-+.+...-+||+.+.|-. -.=+..|-++++.+..+++-|-......++
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888998886521 122345667777777777766665555444
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.28 E-value=1.5e+02 Score=28.54 Aligned_cols=34 Identities=12% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 80 TIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 80 ~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+..++|+....-+.+|.+.+|.-+|.+|..+.-.
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777778889999999999888655433
No 34
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=31.04 E-value=18 Score=25.37 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
+++.+|+.||.++++|--|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~L 36 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISL 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5888999999999988655
No 35
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.93 E-value=98 Score=22.79 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccc
Q 030352 77 RLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 77 RLA~IREELE~laDPmRKEVa~VRKKID~vNReLK 111 (179)
....++++|+.+.+-..+=...|+++|..+.++.+
T Consensus 75 ~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 75 TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888998888888888888888888776543
No 36
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.76 E-value=48 Score=23.78 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=24.7
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHHhcc
Q 030352 59 EVREKVQAHLGRVEEETKRLATIREELEALA 89 (179)
Q Consensus 59 EVReKVqaqLGRvEEETKRLA~IREELE~la 89 (179)
++++-++.++..++++-.+|..+++.|+.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 79 DVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888887654
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.81 E-value=25 Score=26.01 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhhhhcccc
Q 030352 92 MRKEVAVVRKKIDSVNKELK 111 (179)
Q Consensus 92 mRKEVa~VRKKID~vNReLK 111 (179)
++-+|..+|++||.+++|-.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~ 29 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERS 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666543
No 38
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.72 E-value=54 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=14.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 78 LATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 78 LA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
|++|-++++.| .+|+..++.+|+.++..|
T Consensus 29 Ld~v~~~~~~l----~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIV----LRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 44555555554 467777777777666543
No 39
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.23 E-value=1.3e+02 Score=21.67 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhh
Q 030352 53 IEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (179)
Q Consensus 53 IERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsC 117 (179)
|-.+.-..+.|+-||--| +||+.++ .+||.=-.-+..|++.++.-...+.+|+.-+.+-|
T Consensus 26 lKq~RRtlKNRgyAq~CR----~Kr~~q~-~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQSCR----YKRVQQK-HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777766 5777665 66665555555566666666665555555444443
No 40
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.97 E-value=24 Score=23.59 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHhh
Q 030352 91 PMRKEVAVVRKKID 104 (179)
Q Consensus 91 PmRKEVa~VRKKID 104 (179)
-+-||++-+||||+
T Consensus 35 ylekeianlrkkie 48 (49)
T 3he5_A 35 YLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 35689999999996
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.87 E-value=1.3e+02 Score=19.67 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=23.8
Q ss_pred hchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHh
Q 030352 68 LGRVEEETKRLATIREELEALADPMRKEVAVVRKKI 103 (179)
Q Consensus 68 LGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKI 103 (179)
.-.+|.+.+-|.....+|+.=.+-+++|+..++-=|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777777777777776433
No 42
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=27.85 E-value=24 Score=24.00 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhhhhcccccchhhh
Q 030352 91 PMRKEVAVVRKKIDSVNKELKPLGHTC 117 (179)
Q Consensus 91 PmRKEVa~VRKKID~vNReLKPLGqsC 117 (179)
-|..+++.+++.+ .+..-..+.|..|
T Consensus 13 ~l~~~l~~~~~~~-~~~~~~~~~~~~C 38 (148)
T 3pbf_A 13 EIKHQILQTMGVL-SLQGSMLSVGDKV 38 (148)
T ss_dssp HHHHHHHHHHHHH-HHTTSCEEETTEE
T ss_pred HHHHHHHHHHHHH-HHHhcceeeCCEE
Confidence 3444555555555 4444455666655
No 43
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=27.13 E-value=49 Score=21.15 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=18.6
Q ss_pred HHHhhHHHHHHHHHhccchhHHH
Q 030352 73 EETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 73 EETKRLA~IREELE~laDPmRKE 95 (179)
+.+.+...|.+--+.|.||.++.
T Consensus 40 ~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 40 GAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCHHHHH
Confidence 45667888999999999997754
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.95 E-value=2.3e+02 Score=22.18 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=17.3
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 030352 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKEVa~VRKKID~v 106 (179)
+++-...|+..+.+++.-..-..+|++.++++.+.+
T Consensus 134 l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 134 MLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555544444555555555555433
No 45
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=25.60 E-value=21 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhcccccc
Q 030352 95 EVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPL 113 (179)
+++.+|..||.++++|=-|
T Consensus 9 ~L~~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQA 27 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4667888888888876443
No 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.26 E-value=53 Score=26.93 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhcccccchhhhhhhhhhc
Q 030352 94 KEVAVVRKKIDSVNKELKPLGHTCQKKVKFN 124 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPLGqsCQKKEke~ 124 (179)
.|+..+++++++++.+.++ .++=..|+.||
T Consensus 41 ~ei~~L~~ql~sl~~~~~~-~~~~~~~~~e~ 70 (190)
T 4emc_A 41 TEIKQLQKQIDSLNAQVKE-LKTQTSQQAEN 70 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh-hhhHHHHHHHh
Confidence 3566666666666666665 33333444443
No 47
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=25.11 E-value=1.1e+02 Score=23.88 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhhcccccchh
Q 030352 93 RKEVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPLGq 115 (179)
-.+|..+-+.||..|.+|.||..
T Consensus 77 ~~~v~~LE~~id~~~~~l~pl~~ 99 (172)
T 1wvt_A 77 DEKVKGIEELITNYSKELEPLRN 99 (172)
T ss_dssp THHHHHHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCcc
Confidence 37899999999999999999853
No 48
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=24.45 E-value=2.5e+02 Score=24.44 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=42.0
Q ss_pred CCCCchh-HHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhchh------------HHHHhhHHHHHHHHH-hccchhHH
Q 030352 29 SNLSKDD-EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRV------------EEETKRLATIREELE-ALADPMRK 94 (179)
Q Consensus 29 s~~~~~e-EEmsRsALS~FrAKEEEIERKKmEVReKVqaqLGRv------------EEETKRLA~IREELE-~laDPmRK 94 (179)
+.+++++ +.|-+.|- .| +.+++..|.+.|.|......+-.+ +++-..+...-++++ .|.+.
T Consensus 505 ~~ls~~~i~~~~~~~~-~~-~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~--- 579 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAE-AN-AEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE--- 579 (605)
T ss_dssp SSCCHHHHHHHHHHHH-HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---
T ss_pred cCCCHHHHHHHHHHHH-HH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 3444433 34444443 33 334444444455444444333333 233334444444444 23222
Q ss_pred HHHHHHHHhhhhhcccccchh
Q 030352 95 EVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPLGq 115 (179)
+.+.++++++.++.-+.|+..
T Consensus 580 ~~~~~~~~~~~l~~~~~~~~~ 600 (605)
T 2kho_A 580 DKAAIEAKMQELAQVSQKLME 600 (605)
T ss_dssp CHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999888888865
No 49
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=55 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHhhHHHHHHHHHhccchhHHH
Q 030352 72 EEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 72 EEETKRLA~IREELE~laDPmRKE 95 (179)
...+.+...|.+--+.|.||.++.
T Consensus 43 ~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 43 PGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCHHHHH
Confidence 345667888999999999997543
No 50
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=24.37 E-value=40 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHhccchhHHH
Q 030352 79 ATIREELEALADPMRKE 95 (179)
Q Consensus 79 A~IREELE~laDPmRKE 95 (179)
+.|+++|+.++||-+++
T Consensus 7 ~~i~~~L~~~ad~~~a~ 23 (232)
T 3jxy_A 7 KALQEHFTAHQNPEKAE 23 (232)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 67999999999998887
No 51
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=23.99 E-value=2.5e+02 Score=21.75 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhcccccchh
Q 030352 95 EVAVVRKKIDSVNKELKPLGH 115 (179)
Q Consensus 95 EVa~VRKKID~vNReLKPLGq 115 (179)
+.+.++.+++.+.....|+++
T Consensus 192 ~~~~i~~~~~~L~~~~~~i~~ 212 (219)
T 4e81_A 192 DKAAIEAKMQELAQVSQKLME 212 (219)
T ss_dssp CHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887777765
No 52
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=23.94 E-value=1.7e+02 Score=23.58 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=37.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 44 TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 44 S~FrAKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+.|..=.++++. +-++||++..---.++..+|+.-++-.=...-..+..+-.+..+++|+.+...++-|
T Consensus 22 ~iF~~~~~~Ld~-~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L 90 (249)
T 3axj_A 22 DIFSNYQKYIDN-EQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKL 90 (249)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554 456778777777778888888766544333221223333444455555544443333
No 53
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.87 E-value=89 Score=20.36 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=36.5
Q ss_pred HHHhhhhhhHHHHHHHHH-HHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccccc
Q 030352 41 SALTTFRAKEEEIEKKKL-EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKP 112 (179)
Q Consensus 41 sALS~FrAKEEEIERKKm-EVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKP 112 (179)
++|.-.||.=|+|-.+-. |+-.--+. .+|+-+.-.+.--++|. ..+-|+..+|..|..+.-||-.
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~----~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKS---KFADLSEAANRNNDALR----QAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777666655432 33222222 23333333333333433 2678888888888888777644
No 54
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=23.87 E-value=43 Score=26.07 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.3
Q ss_pred HHHHHHHHHhccchhHHHH
Q 030352 78 LATIREELEALADPMRKEV 96 (179)
Q Consensus 78 LA~IREELE~laDPmRKEV 96 (179)
+.+|+++|+.++||-+++.
T Consensus 3 ~~~i~~~L~~l~d~~~a~~ 21 (235)
T 1t06_A 3 FKTVMQELEALGKERTKKI 21 (235)
T ss_dssp HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHH
Confidence 4679999999999998764
No 55
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.90 E-value=62 Score=24.80 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=36.9
Q ss_pred hhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhh
Q 030352 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (179)
Q Consensus 70 RvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQK 119 (179)
--|+..+||+.+-+|++..+.-.++.|..-.+....|+.-|.-+..+|..
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~ 135 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIAN 135 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677899999999999999888887777666666666666666666643
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.85 E-value=2.2e+02 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHhhhhhcccccc
Q 030352 91 PMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 91 PmRKEVa~VRKKID~vNReLKPL 113 (179)
-.+||...+-+.|+.+|-.++-+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHH
Confidence 45566666666666666655543
No 57
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.83 E-value=72 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=17.3
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhh
Q 030352 71 VEEETKRLATIREELEALADPMRKEVAVVRKKID 104 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKEVa~VRKKID 104 (179)
|+...+.++.++.++..+..-|-.|++.|..+..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~ 51 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARAS 51 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555554443
No 58
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=22.41 E-value=1.6e+02 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhcccccch
Q 030352 93 RKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPLG 114 (179)
-.+|..+-+.||..|.+|.||.
T Consensus 94 ~~~v~~LE~~id~~~~~l~pl~ 115 (193)
T 2g2d_A 94 QSYIDRLEGWCDAYNAGLPALK 115 (193)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCC
Confidence 3789999999999999999985
No 59
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.03 E-value=80 Score=20.26 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=19.9
Q ss_pred HHHHhhHHHHHHHHHhccchhHHH
Q 030352 72 EEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 72 EEETKRLA~IREELE~laDPmRKE 95 (179)
++.+.+...|.+--+.|.||.++.
T Consensus 47 ~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 47 EEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHH
Confidence 456778899999999999998754
No 60
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=21.88 E-value=1.1e+02 Score=27.19 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=19.5
Q ss_pred cchhHHHHHHHHHHhhhhhcccccchhhh
Q 030352 89 ADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (179)
Q Consensus 89 aDPmRKEVa~VRKKID~vNReLKPLGqsC 117 (179)
+.....|+..++..|+.+..+++++-+..
T Consensus 370 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 398 (470)
T 4g63_A 370 SQQYDQEIHDLQLQISTVDLQISRLLQEQ 398 (470)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777777765543
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.55 E-value=1.1e+02 Score=22.90 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 63 KVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
...+++...++|.-.|.+=..++..=.+-..+|++..+++|+...++++-|
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554443333333334556778888888888777776655
No 62
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.55 E-value=70 Score=21.79 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=10.2
Q ss_pred HHhchhHHHHhhHHHHHHHHHhc
Q 030352 66 AHLGRVEEETKRLATIREELEAL 88 (179)
Q Consensus 66 aqLGRvEEETKRLA~IREELE~l 88 (179)
++|..++.+--.+-.=|+|||.+
T Consensus 63 ~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 63 ADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445555544
No 63
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=21.51 E-value=1.7e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhhcccccch
Q 030352 93 RKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 93 RKEVa~VRKKID~vNReLKPLG 114 (179)
-..|..+-+.||..|.+|.||.
T Consensus 86 ~~~v~~LE~~id~~~~~l~pl~ 107 (183)
T 2zhy_A 86 DAHLARLDGWLAHYNGQLPPLE 107 (183)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCc
Confidence 3779999999999999999874
No 64
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.82 E-value=72 Score=21.05 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHH
Q 030352 48 AKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (179)
Q Consensus 48 AKEEEIERKKmEVReKVqaqLGRvEEETKRLA~IREELE~laDPmRKE 95 (179)
|-.+||.+.=...--+.+---+.-...+.+...|.+--+.|.||.++.
T Consensus 29 as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 29 ASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp CCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 556677665444333333222222445678889999999999997654
No 65
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=20.82 E-value=1.5e+02 Score=23.12 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhhcccccch
Q 030352 94 KEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPLG 114 (179)
.+|..+-+.||..|.+|.||.
T Consensus 81 ~~v~~LE~~id~~~~~l~~l~ 101 (177)
T 1nog_A 81 EMIDYLEARVKEMKAEIGKIE 101 (177)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhhCCCCC
Confidence 789999999999999999885
No 66
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=20.79 E-value=1.2e+02 Score=28.44 Aligned_cols=50 Identities=28% Similarity=0.378 Sum_probs=29.5
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhh--hhhhcceeEeeehh
Q 030352 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK--KVKFNGIFLCLQWT 133 (179)
Q Consensus 71 vEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQK--KEke~~~~~~~~~~ 133 (179)
|-.=++|.|..++||-.-.||.||+ ||+-+++.|.+ .+.-....=.+||.
T Consensus 206 vi~~a~Rya~la~e~A~~ed~~rk~-------------EL~~ia~~~~~v~~~pa~tf~EAlQ~~ 257 (776)
T 2f3o_A 206 VINYGLRYSKLAEELAESEDGERRE-------------ELLKIAEICRKVPAEKPETFWEAVQFV 257 (776)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTHHHH-------------HHHHHHHHHHHTTTSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHH-------------HHHHHHHHhCcCccCCCCCHHHHHHHH
Confidence 3344678889988876545998873 34445666665 22223333445553
No 67
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.75 E-value=64 Score=23.80 Aligned_cols=53 Identities=9% Similarity=0.344 Sum_probs=25.1
Q ss_pred HHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcccccchhhhhhh
Q 030352 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (179)
Q Consensus 64 VqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReLKPLGqsCQKK 120 (179)
|+..|..+..-..+|....+.+ |+.|- ....++.+||.+..+++-+++.|.++
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~--L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~ 100 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDI--LSAPQ--TDDQMKEELEELMTDIKRTANKVRGK 100 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCC--chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555543 22222 22345666666666666666665554
No 68
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=20.64 E-value=2.2e+02 Score=21.17 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhc---hhHHHHhhHH---HHHHHHHhccchhHHHHHH
Q 030352 46 FRAKEEEIEKKKLEVREKVQAHLG---RVEEETKRLA---TIREELEALADPMRKEVAV 98 (179)
Q Consensus 46 FrAKEEEIERKKmEVReKVqaqLG---RvEEETKRLA---~IREELE~laDPmRKEVa~ 98 (179)
-...|++|.+...++.+.+-.-|. -+....+++. .|--.||.+||=... ++.
T Consensus 45 V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~ 102 (235)
T 1sum_B 45 VIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHD-IAK 102 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345677888888888888765433 3445555554 344689999998775 443
No 69
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=20.58 E-value=37 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=32.5
Q ss_pred HhhHHHHH----HHHHhccchhHHHHHHHHHHh----hhhhcccccchhhhh
Q 030352 75 TKRLATIR----EELEALADPMRKEVAVVRKKI----DSVNKELKPLGHTCQ 118 (179)
Q Consensus 75 TKRLA~IR----EELE~laDPmRKEVa~VRKKI----D~vNReLKPLGqsCQ 118 (179)
|+=+..|| ++...+++-+++.++.+-.-. +.+-..+.++|++|.
T Consensus 68 s~A~p~IW~~~~~~F~~~~~~~~~aa~~l~~aA~~gd~~~~~a~~~v~~~Ck 119 (128)
T 2ccy_A 68 GETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCK 119 (128)
T ss_dssp CCBCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhHHH
Confidence 56778888 677778888888877766543 455667888999994
No 70
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.46 E-value=44 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=12.2
Q ss_pred HHhccchhHHHHHHHHHHhhhhhcccccch
Q 030352 85 LEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 85 LE~laDPmRKEVa~VRKKID~vNReLKPLG 114 (179)
|+..++-++.-...|+-.++.++..|.||.
T Consensus 16 l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 16 IEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444444444444443
No 71
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.38 E-value=45 Score=21.60 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=10.7
Q ss_pred HhccchhHHHHHHHHHHhhhhhcccccc
Q 030352 86 EALADPMRKEVAVVRKKIDSVNKELKPL 113 (179)
Q Consensus 86 E~laDPmRKEVa~VRKKID~vNReLKPL 113 (179)
+..|.-++.-...|+..++.++..|.+|
T Consensus 14 ~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 14 RSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444433333
No 72
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=20.14 E-value=1.6e+02 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhcccccch
Q 030352 94 KEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPLG 114 (179)
.+|..+-+.||..|.+|-||.
T Consensus 80 ~~v~~LE~~id~~~~~l~~l~ 100 (177)
T 1woz_A 80 KYVKWLEERTVEYRKESGPVK 100 (177)
T ss_dssp HHHHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHHHHhhCCCCC
Confidence 778888899999999999884
No 73
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=20.06 E-value=1.9e+02 Score=18.73 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=27.0
Q ss_pred HHHHHHHhchhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhccc
Q 030352 61 REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (179)
Q Consensus 61 ReKVqaqLGRvEEETKRLA~IREELE~laDPmRKEVa~VRKKID~vNReL 110 (179)
+-.+...+|+.+++..-+....+--..-.+..+++++.+.+++..-++.-
T Consensus 103 ~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 103 RAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777776555444332211111134667777777776655444
No 74
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=20.01 E-value=1.7e+02 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhcccccch
Q 030352 94 KEVAVVRKKIDSVNKELKPLG 114 (179)
Q Consensus 94 KEVa~VRKKID~vNReLKPLG 114 (179)
.+|..+-+.||..|.+|.||.
T Consensus 94 ~~v~~LE~~Id~~~~~lppl~ 114 (196)
T 2idx_A 94 GPILELEQWIDKYTSQLPPLT 114 (196)
T ss_dssp HHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHhhCCCCC
Confidence 678899999999999999985
Done!