BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030353
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1
Length = 279
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)
Query: 1 MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
MSFQDLEAG R P N F + QQ S DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1 MSFQDLEAGTRSPAPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56
Query: 61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
+GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H S I+KIADAKLAKDFQ
Sbjct: 57 IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116
Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143
>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
Length = 268
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 118/151 (78%), Gaps = 12/151 (7%)
Query: 1 MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
MSFQDLE+G R FN + QD +QAVA+ IFQINT VS+F RLVN+
Sbjct: 1 MSFQDLESG-RGRSTRKFNGGR-----------QDSTQAVASGIFQINTGVSTFQRLVNT 48
Query: 61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLK+ASE DH + V+P +KIADAKLA+DFQ
Sbjct: 49 LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQ 108
Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
+VLKEFQKAQ+ AAERETTY PFVP+ +L S
Sbjct: 109 AVLKEFQKAQQTAAERETTYTPFVPQSALPS 139
>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1
Length = 255
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 113/151 (74%), Gaps = 7/151 (4%)
Query: 1 MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
MSFQDLEAG + N QD +Q VA+ IFQINT+VS+F+RLVN+
Sbjct: 1 MSFQDLEAGRGRSLASSRNI-------NGGGSRQDTTQDVASGIFQINTSVSTFHRLVNT 53
Query: 61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
LGTPKDT +LR+KLHKTRL+IGQLVKDTS+KLK+ASE DH V+ +KI DAKLAKDFQ
Sbjct: 54 LGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQ 113
Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
+VLKEFQKAQRLAAERET YAP V K SL S
Sbjct: 114 AVLKEFQKAQRLAAERETVYAPLVHKPSLPS 144
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%)
Query: 75 HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134
HK L IGQLVKDTS+ L++ASE DH +V+ +KIADAKLAKDF++ LKEFQKAQ +
Sbjct: 154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213
Query: 135 ERETTYAPFVPKESLSS 151
ERET+Y PF PK S SS
Sbjct: 214 ERETSYIPFDPKGSFSS 230
>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1
Length = 261
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 35 DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
DP+Q +++ I +I + R +N LGTP+D+ +LR +L + + + QL K+T
Sbjct: 10 DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69
Query: 92 LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFV------- 144
+K+ RKI +L +F + L FQK QR AAERE + V
Sbjct: 70 IKEFGSLPTTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEREKEFVARVRASSRVS 129
Query: 145 ---PKESLSSRCCLIHW 158
P+ES R L+ W
Sbjct: 130 GGFPEESSKER-NLVSW 145
>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3
Length = 261
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 35 DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
DP+Q +++ I +I + R +N LGTP+D+ +LR +L + + + QL K+T
Sbjct: 10 DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKY 69
Query: 92 LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
+K+ RKI +L +F + L FQK QR AAERE FV + SS
Sbjct: 70 IKEFGSLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126
Query: 152 RC 153
R
Sbjct: 127 RV 128
>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4
Length = 261
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 35 DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
DP+Q +++ I +I R +N LGTP+D+ +LR +L + + + QL K+T
Sbjct: 10 DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69
Query: 92 LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
+K+ RKI +L +F + L FQK QR AAERE FV + SS
Sbjct: 70 IKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126
Query: 152 RCC 154
R
Sbjct: 127 RVS 129
>sp|Q96NA8|TSNA1_HUMAN t-SNARE domain-containing protein 1 OS=Homo sapiens GN=TSNARE1 PE=2
SV=2
Length = 513
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 14 PQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDK 73
P F+ + Q + Q+ Q ++A +F+IN++V+S R + SLGTP DT +LRD
Sbjct: 238 PSEGFSLEPPRATQVDPCNLQELFQEMSANVFRINSSVTSLERSLQSLGTPSDTQELRDS 297
Query: 74 LHKTRLHIGQLVKDTSSKLKQASE 97
LH + + + ++S +KQ +E
Sbjct: 298 LHTAQQETNKTIAASASSVKQMAE 321
>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1
Length = 356
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
Q+ I QI AV +LV LGTPKD++D R+K+ L+ S K+K +
Sbjct: 89 QSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTTHLISSESGKVKNLTS 148
Query: 98 ADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE-TTYAPFVP 145
+ S K+ KL K+F + L++F+ ++A ++E TT P P
Sbjct: 149 LASRSRDSK-NKLLYQKLVKEFNNCLQQFKDIAQVATKKEKTTPLPVAP 196
>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4
Length = 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 35 DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
DP+Q +++ I +I + R +N LGTP+DT +LR +L + + + QL K+T
Sbjct: 10 DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKY 69
Query: 92 LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
+K+ RKI +L +F + L FQK QR AAERE FV + SS
Sbjct: 70 IKEFGFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAERE---KEFVARVRASS 126
Query: 152 RC 153
R
Sbjct: 127 RV 128
>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3
Length = 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96
+Q +++ I +I R +N LGTP+D+ +LR L + + + QL K+T +K+
Sbjct: 15 AQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFG 74
Query: 97 EADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRC 153
RKI +L +F + L FQKAQR AAERE FV + SSR
Sbjct: 75 SLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAERE---KEFVARVRASSRV 128
>sp|Q9ER00|STX12_MOUSE Syntaxin-12 OS=Mus musculus GN=Stx12 PE=1 SV=1
Length = 274
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
Q + I +I+ A + L++ LGT +D+ L++ L + + QL K+T+ LK+
Sbjct: 27 QTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 86
Query: 98 ADHHTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
S R K+ +L DF S L FQ QR +E+E
Sbjct: 87 LPLPLSASEQRQQKLQKERLMNDFSSALNNFQVVQRKVSEKE 128
>sp|G3V7P1|STX12_RAT Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1
Length = 274
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
Q + I +I+ A + L++ LGT +D+ L++ L + + QL K+T+ LK+
Sbjct: 27 QTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQFQHSTNQLAKETNELLKELGS 86
Query: 98 ADHHTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
S R K+ +L DF S L FQ QR +E+E
Sbjct: 87 LPLPLSASEQRQQKLQKERLMNDFSSALNNFQVVQRKVSEKE 128
>sp|Q54X86|STX7B_DICDI Probable syntaxin-7B OS=Dictyostelium discoideum GN=syn7B PE=3 SV=1
Length = 286
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 49 TAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIR 108
T ++ F +++ +GT +DT LR LHK ++++ +K + ++KQ S +
Sbjct: 23 TELTEFEKIIKDVGTGRDTTTLRSTLHKKKVNLADDLKVIAQQIKQLPS-------SKLP 75
Query: 109 KIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVP 145
K K+ K F+ +F++ + ++E+++ P VP
Sbjct: 76 KFQQEKIVKQFKEASSKFEELLSTSNKKESSHEPIVP 112
>sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
Q + I +I+ A + L++ LGT +D+ L++ L + + QL K+T+ LK+
Sbjct: 27 QTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 86
Query: 98 ADHHTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
S R ++ +L DF + L FQ QR +E+E
Sbjct: 87 LPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 128
>sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1
Length = 276
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
Q + I +I+ A + ++ LGT +D+ L++ L + + QL K+T+ LK+
Sbjct: 27 QTCSGNIQRISQATAQIKNSMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 86
Query: 98 ADHHTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
S R ++ +L DF + L FQ QR +E+E
Sbjct: 87 LPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 128
>sp|P32854|PEP12_YEAST Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PEP12 PE=1 SV=2
Length = 288
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLR----DKLHKTRL----HIGQLVKDTS 89
+ VAA +F+IN +S+ + +L + D D+ ++++K + IG L+K +
Sbjct: 31 EEVAAELFEINGQISTLQQFTATLKSFIDRGDVSAKVVERINKRSVAKIEEIGGLIKKVN 90
Query: 90 SKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQR 131
+ +K+ +A + + IA KL +D +EFQ QR
Sbjct: 91 TSVKKM-DAIEEASLDKTQIIAREKLVRDVSYSFQEFQGIQR 131
>sp|O42364|APOEB_DANRE Apolipoprotein Eb OS=Danio rerio GN=apoeb PE=2 SV=1
Length = 281
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 51 VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKI 110
V F++ V+ L T D + K + + L+ DT ++L SE + T+++P
Sbjct: 35 VDRFWQYVSELNTQTDGMVQNIKGSQLSRELDTLITDTMAELSSYSE-NLQTQMTPYASD 93
Query: 111 ADAKLAKDFQSVLKEFQKAQRLAAERETTY 140
A +L+KD Q + + Q A ER T Y
Sbjct: 94 AAGQLSKDLQLLAGKLQTDMTDAKERSTQY 123
>sp|Q148R9|R9BP_MOUSE Regulator of G-protein signaling 9-binding protein OS=Mus
musculus GN=Rgs9bp PE=1 SV=2
Length = 237
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQA 95
+N + ++ LV ++G DT DLR++L KTR +L T ++L A
Sbjct: 13 LNKTTACYHHLVLTVGGSADTQDLREELQKTRQKARELAVATGARLTVA 61
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 2 SFQDLEAGVRVPPQNPFNAAKRKQ--QQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVN 59
S DL++ +R PP + AA++ Q +QQ+ S QD + + A T V +
Sbjct: 2213 SIADLQSKLRSPPGPRYQAAQQLQTLEQQSISLQQDTERLGSQA-----TGVQG--QAGQ 2265
Query: 60 SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
L T + TL KL ++ +G+ + + +S++ Q S D
Sbjct: 2266 LLDTTESTLGRAQKLLESVRAVGRALNELASRMGQGSPGD 2305
>sp|B8FUJ0|SYGB_DESHD Glycine--tRNA ligase beta subunit OS=Desulfitobacterium hafniense
(strain DCB-2 / DSM 10664) GN=glyS PE=3 SV=1
Length = 690
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 112 DAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKK 163
DA LA+ + + +KAQ LAA+RETT FVP RC NL+KK
Sbjct: 551 DAVLAQGSNQITRAARKAQVLAAKRETT--EFVPYSQAYIRCL----NLSKK 596
>sp|Q24SX0|SYGB_DESHY Glycine--tRNA ligase beta subunit OS=Desulfitobacterium hafniense
(strain Y51) GN=glyS PE=3 SV=1
Length = 690
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 112 DAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSRCCLIHWNLAKKC 164
DA LA+ + + +KAQ LAA+RETT FVP RC NL+KK
Sbjct: 551 DAVLAQGSNQITRAARKAQVLAAKRETT--EFVPYSQAYIRCL----NLSKKA 597
>sp|A9BF22|SYL_PETMO Leucine--tRNA ligase OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=leuS PE=3 SV=1
Length = 828
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 1 MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
M QD + P P K ++ Q+ + + FQ NTAVSS L+N
Sbjct: 641 MKIQDKIIHLENKPNYPLKNKSEKDLRRKLHQTIEKITSDIEGNFQFNTAVSSLMELLNE 700
Query: 61 LGTPKDTLDLRD 72
L + + D +D
Sbjct: 701 LNSYLNNTDDKD 712
>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1
SV=2
Length = 607
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 10 VRVPPQNP---FNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSF 54
V VPPQNP N+A Q QSQ DP QA ++ + + + S+
Sbjct: 345 VGVPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSY 392
>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1
SV=2
Length = 521
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 10 VRVPPQNP---FNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSF 54
V VPPQNP N+A Q QSQ DP QA ++ + + + S+
Sbjct: 259 VGVPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSY 306
>sp|P35341|L_SV41 RNA-directed RNA polymerase L OS=Simian virus 41 GN=L PE=3 SV=1
Length = 2269
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 80 HIGQLVKDTSSKLKQASEADHHTEVSPIRKIADA--KLAKDFQSVLKEFQKAQRLAAERE 137
H G+L+K+ + Q S +S I I++ + +D ++ F K QR A +
Sbjct: 585 HAGKLMKENGVVMNQISLTKSLLTMSQIGLISEKAQRYTRDNIALGALFSKGQRTRAHPQ 644
Query: 138 TTYAPF-------VPKESLSSRCCLIHWNLAKKCDKYTH 169
T + +P +SL C I +L K C ++ +
Sbjct: 645 TQLSSIDSSQNRELPDDSLELSACFITTDLTKYCPQWRY 683
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,161,014
Number of Sequences: 539616
Number of extensions: 1844003
Number of successful extensions: 10534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10450
Number of HSP's gapped (non-prelim): 106
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)