Query 030353
Match_columns 179
No_of_seqs 111 out of 262
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:12:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnx_A Syntaxin-12; snare, HAB 100.0 4.8E-33 1.7E-37 213.4 15.2 118 30-147 9-128 (130)
2 1hs7_A Syntaxin VAM3; UP-and-D 99.8 5.7E-19 2E-23 128.9 11.1 89 32-142 7-96 (97)
3 1fio_A SSO1 protein; four heli 99.5 7.2E-13 2.5E-17 105.8 14.3 110 30-142 4-116 (196)
4 2xhe_B Syntaxin1; exocytosis, 99.2 1E-10 3.5E-15 98.6 13.8 114 30-143 43-171 (279)
5 1dn1_B Syntaxin 1A, syntaxin b 99.0 3.3E-09 1.1E-13 89.2 13.5 113 29-141 29-149 (267)
6 1s94_A S-syntaxin; three helix 98.8 1.5E-08 5E-13 80.2 8.1 112 31-142 39-158 (180)
7 1ez3_A Syntaxin-1A; three heli 98.2 4.4E-05 1.5E-09 56.4 12.9 110 31-140 8-125 (127)
8 3c98_B Syntaxin-1A; protein co 96.9 0.016 5.6E-07 46.5 12.3 110 30-139 42-159 (279)
9 2p7n_A Pathogenicity island 1 81.9 5.4 0.00018 35.2 8.1 74 33-126 178-252 (407)
10 2ym9_A Cell invasion protein S 76.5 6.1 0.00021 34.2 6.7 75 33-127 134-209 (346)
11 3nzz_A Cell invasion protein S 70.9 12 0.0004 31.9 7.0 75 33-127 96-171 (308)
12 3ghg_A Fibrinogen alpha chain; 70.2 22 0.00076 32.5 9.0 101 31-141 60-193 (562)
13 2dnx_A Syntaxin-12; snare, HAB 67.9 32 0.0011 25.0 9.1 97 43-147 15-121 (130)
14 1m1j_A Fibrinogen alpha subuni 66.5 74 0.0025 28.6 12.1 92 33-130 49-141 (491)
15 1deq_A Fibrinogen (alpha chain 65.7 52 0.0018 28.8 10.2 26 36-61 54-79 (390)
16 1lyp_A CAP18; lipopolysacchari 64.4 16 0.00055 20.3 4.4 26 70-95 2-27 (32)
17 1n7s_D SNAP-25A; neuronal snar 54.9 34 0.0012 21.8 5.6 60 36-95 4-64 (66)
18 3b5n_D Protein transport prote 52.6 29 0.00097 22.5 4.9 33 36-68 4-36 (64)
19 3r9v_A Invasin IPAD; type III 51.8 45 0.0015 28.0 7.1 76 33-128 95-172 (286)
20 1sfc_D Protein (SNAP-25B), pro 51.2 39 0.0013 22.9 5.7 64 33-96 20-84 (87)
21 3zqe_A Protein PRGI, cell inva 50.7 61 0.0021 27.4 7.8 86 42-127 58-168 (305)
22 2j0o_A Invasin IPAD; type III 49.7 58 0.002 27.7 7.6 76 33-128 117-194 (318)
23 1zl8_A LIN-7; heterodimer, alp 49.1 23 0.0008 22.3 3.8 42 84-125 5-47 (53)
24 4h8s_A DCC-interacting protein 47.8 1.3E+02 0.0043 25.4 14.2 27 30-56 39-65 (407)
25 1jcd_A Major outer membrane li 43.0 31 0.001 21.7 3.7 25 37-61 6-30 (52)
26 3nft_A Translocator protein BI 41.2 13 0.00045 31.5 2.2 52 75-127 141-192 (303)
27 1l4a_D S-SNAP25 fusion protein 40.1 36 0.0012 23.2 4.0 62 34-95 22-84 (87)
28 3ghg_A Fibrinogen alpha chain; 37.8 1.5E+02 0.0051 27.1 8.7 27 35-61 50-76 (562)
29 2zvf_A Alanyl-tRNA synthetase; 34.9 1.2E+02 0.0042 22.2 6.8 49 47-97 9-57 (171)
30 1gl2_D Syntaxin 8, vesicle tra 34.1 55 0.0019 20.7 4.0 57 39-95 6-63 (65)
31 3f6n_A Virion-associated prote 32.0 1.5E+02 0.0052 21.8 7.0 14 111-124 45-58 (129)
32 2q12_A DIP13 alpha, DCC-intera 30.3 2E+02 0.0068 22.6 8.7 72 65-139 14-102 (265)
33 1zva_A E2 glycoprotein; membra 30.0 1.3E+02 0.0044 20.3 6.2 18 78-95 59-76 (77)
34 1naf_A ADP-ribosylation factor 29.1 1.9E+02 0.0064 21.9 7.5 78 39-130 57-142 (158)
35 3fx7_A Putative uncharacterize 26.9 1.6E+02 0.0056 20.5 9.0 44 32-77 10-53 (94)
36 2yy0_A C-MYC-binding protein; 26.2 1E+02 0.0035 19.1 4.1 35 63-97 17-51 (53)
37 1bgc_A Granulocyte colony-stim 25.7 2.3E+02 0.008 21.9 7.1 57 41-99 72-128 (174)
38 2nps_D Syntaxin-6; vesicle fus 25.7 99 0.0034 20.5 4.3 57 41-97 18-75 (82)
39 3f6n_A Virion-associated prote 25.0 1.4E+02 0.0049 22.0 5.2 30 34-63 5-34 (129)
40 1z23_A CRK-associated substrat 25.0 2.3E+02 0.008 21.7 7.6 107 32-138 8-117 (163)
41 3gwk_C SAG1039, putative uncha 24.8 1.5E+02 0.0051 19.4 8.5 30 32-61 12-41 (98)
42 1t3j_A Mitofusin 1; coiled coi 24.7 1.8E+02 0.0063 20.3 8.5 32 30-61 35-66 (96)
43 1lq7_A Alpha3W; three helix bu 23.9 1.4E+02 0.0049 18.9 7.6 51 47-97 7-62 (67)
44 2bez_C E2 glycoprotein; coiled 23.5 1.7E+02 0.006 19.7 5.7 29 33-61 14-42 (77)
45 4aj5_A SKA1, spindle and kinet 23.3 1.9E+02 0.0066 20.1 7.8 46 45-97 11-58 (91)
46 3u0c_A Invasin IPAB, 62 kDa an 23.2 2.6E+02 0.0089 21.8 6.7 30 113-142 106-135 (201)
47 2l3l_A Tubulin-specific chaper 22.0 2.2E+02 0.0074 20.2 8.2 78 39-142 32-109 (111)
48 2jqq_A Conserved oligomeric go 21.3 3.1E+02 0.011 21.7 11.0 26 112-137 158-183 (204)
49 4dnd_A Syntaxin-10, SYN10; str 20.9 2.4E+02 0.0084 20.4 9.9 92 32-127 28-125 (130)
50 1oxz_A ADP-ribosylation factor 20.8 3E+02 0.01 21.3 7.0 21 41-61 75-95 (186)
51 3t98_B Nucleoporin NUP58/NUP45 20.6 2.2E+02 0.0074 19.7 5.3 32 32-63 9-40 (93)
52 1eq1_A Apolp-III, apolipophori 20.4 2.1E+02 0.0071 21.6 5.5 83 37-133 44-126 (166)
53 2vs0_A Virulence factor ESXA; 20.3 1.8E+02 0.0062 18.6 7.5 29 33-61 11-39 (97)
No 1
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=213.36 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=111.4
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCchh
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH--TEVSPI 107 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~--~~~~~~ 107 (179)
+|||++|++.|+++||+||++|++|++++++|||++|+++||++||.++++|++|+|+|++.|++|++|++. ..++++
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999731 135678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 030353 108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKE 147 (179)
Q Consensus 108 ~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ar~a 147 (179)
++++++||++||+++|++||++||.++++||+++..|++.
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ar~~ 128 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSGPS 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999999999999999999988855
No 2
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.79 E-value=5.7e-19 Score=128.95 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=80.8
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKI 110 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~-~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~ 110 (179)
||..|++.++++|+ .|++++.+|||++|+++||++|. .++.+|+.|.|+|+ +|..++
T Consensus 7 d~~~li~t~s~niq-------~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~----------- 64 (97)
T 1hs7_A 7 ELSNLIETFAEQSR-------VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH----------- 64 (97)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------
T ss_pred cHHHHHHHHHHHHH-------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------
Confidence 67888888888887 89999999999999999999999 99999999999999 444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353 111 ADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (179)
Q Consensus 111 ~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~ 142 (179)
+++||++||..++++||.+||.|+++++.++.
T Consensus 65 qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e~~~ 96 (97)
T 1hs7_A 65 QNGKLSADFKNLKTKYQSLQQSYNQRKSLFPL 96 (97)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 58999999999999999999999999999875
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.48 E-value=7.2e-13 Score=105.75 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCC-CCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT-PKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSP 106 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT-~kDt~--~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~ 106 (179)
.|+|-..++.|..+|++|+.+|..|+++...+++ +.+.. .+|.+|+.+...|+.+++.+...|+.|.... ..++
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r 80 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDT 80 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhh
Confidence 3579999999999999999999999999999555 44432 6999999999999999999999999999985 3468
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353 107 IRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (179)
Q Consensus 107 ~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~ 142 (179)
.++.+..+|.++|++++.+|+.+|+.|.++.|..+.
T Consensus 81 ~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~ 116 (196)
T 1fio_A 81 NKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999876654
No 4
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.25 E-value=1e-10 Score=98.60 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=100.3
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH----- 101 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~-~LGT~kDt~--~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~----- 101 (179)
.|+|..+++.|...|+.|+.+|..|.++.+ .|||+.+.. .++..|+.++..|+.+++.+...|+.|......
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~ 122 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG 122 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 568999999999999999999999999986 589999988 899999999999999999999999999874321
Q ss_pred -----CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 030353 102 -----TE--VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF 143 (179)
Q Consensus 102 -----~~--~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ 143 (179)
.+ ..+.++.+..+|.++|+.++.+|+.+|+.|.++.|..+.+
T Consensus 123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R 171 (279)
T 2xhe_B 123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR 171 (279)
T ss_dssp CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 2256888999999999999999999999999999876653
No 5
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.04 E-value=3.3e-09 Score=89.22 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=96.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------
Q 030353 29 NQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH------- 100 (179)
Q Consensus 29 ~~~eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kD-t~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~------- 100 (179)
.-|+|-..++.|..+|..|+.+|..|+++.+.+++..+ .+.++.+|+.+...|+.+++.+...|+.|.....
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~ 108 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 108 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 36789999999999999999999999999999887544 4789999999999999999999999999976421
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030353 101 HTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYA 141 (179)
Q Consensus 101 ~~~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~ 141 (179)
+....+.++.+...|.+.|++++.+|+.+|..|.++.|..+
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i 149 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 149 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122567889999999999999999999999999987643
No 6
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.79 E-value=1.5e-08 Score=80.23 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=90.3
Q ss_pred CcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 030353 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT 102 (179)
Q Consensus 31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~~ 102 (179)
++|-.-++.|...|..|..+|..|+++-.. |+++.+...++.+|..+...|+.+++.+...|+.|..... ..
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 118 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSS 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 368899999999999999999999998877 8888888899999999999999999999999999986431 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (179)
Q Consensus 103 ~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~ 142 (179)
...+.++.+...|.+.|..++++||.+|..|.++.|..+.
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~ 158 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK 158 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335678889999999999999999999999998877765
No 7
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.19 E-value=4.4e-05 Score=56.42 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=90.6
Q ss_pred CcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 030353 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT 102 (179)
Q Consensus 31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~-------~~ 102 (179)
++|-.-++.|...|..|..+|..|.++-.. |.++.....++.+|..+...|+.+++.+-..|+.|..-.. ..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 87 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 87 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 468888999999999999999999886655 5566667789999999999999999999999999876321 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030353 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY 140 (179)
Q Consensus 103 ~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~~ 140 (179)
...+.++-+..-|.+-|.+++.+|+.+|..|-++-+.-
T Consensus 88 ~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 88 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12245777888899999999999999999999887653
No 8
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=96.90 E-value=0.016 Score=46.54 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=86.6
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH------- 101 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~-LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~------- 101 (179)
-.+|-.-++.|...|.+|..+|..|.++... +.++.+.......+..+...+..++..+...++.+..+...
T Consensus 42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~ 121 (279)
T 3c98_B 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS 121 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4578888999999999999999999987665 57888888899999999999999998888888777665321
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030353 102 TEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETT 139 (179)
Q Consensus 102 ~~~~~~~k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek~ 139 (179)
...-+...-+...|...|.....+|...|+.+.+.-+.
T Consensus 122 ~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~ 159 (279)
T 3c98_B 122 SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 159 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112344556679999999999999999988865443
No 9
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=81.89 E-value=5.4 Score=35.15 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 030353 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (179)
Q Consensus 33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (179)
...|+..|+..|-.|+.+ +--+. ++..+-.+.++++|+.|.+++.+...-......++-
T Consensus 178 ~aeLw~~Isd~I~nIksdYldvYa--------------------~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd 237 (407)
T 2p7n_A 178 DSDLWDMISDQIGKIKDNYLGVYE--------------------NVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLN 237 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH--------------------HHHHHHHHHHHHHHHHHHHHGGGCC---------CC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeec
Confidence 345566666666666655 44343 344556788999999999999998642233368888
Q ss_pred HHHHHHHHHHHHHHH
Q 030353 112 DAKLAKDFQSVLKEF 126 (179)
Q Consensus 112 ~eKL~~dF~~aL~~F 126 (179)
..++.++|...++.|
T Consensus 238 ~~sfk~al~kl~~KY 252 (407)
T 2p7n_A 238 VDALKAALEKLKKDF 252 (407)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 889999999998888
No 10
>2ym9_A Cell invasion protein SIPD; type 3 secretion, T3SS, needle TIP protein, H pathogen interaction, bacterial pathogenesis, TIP complex; 3.00A {Salmonella enterica subsp}
Probab=76.46 E-value=6.1 Score=34.18 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 030353 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (179)
Q Consensus 33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (179)
...|+..|+..|-.|+.+ +--+..++ .+-.+.++++++.|.+++.+..........++-
T Consensus 134 ~aeLW~~Is~~I~~I~sdYldvYa~Iv--------------------k~YTdyyQd~Ne~LSKlSd~IsaGkDGN~IkFd 193 (346)
T 2ym9_A 134 DAEIWDMVSQNISAIGDSYLGVYENVV--------------------AVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLD 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH--------------------HHHHHHHHHHHHHHGGGGGGEEECSSSSEEEEC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhccCCCCCeeeec
Confidence 578999999999999977 55555544 446788999999999999988632233358888
Q ss_pred HHHHHHHHHHHHHHHH
Q 030353 112 DAKLAKDFQSVLKEFQ 127 (179)
Q Consensus 112 ~eKL~~dF~~aL~~FQ 127 (179)
..++.++|...++.|-
T Consensus 194 ~~s~k~~l~~l~~KY~ 209 (346)
T 2ym9_A 194 VTSLKNDLNSLVNKYN 209 (346)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999888885
No 11
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=70.88 E-value=12 Score=31.88 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 030353 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (179)
Q Consensus 33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (179)
+.+|...|+..|-.|+.+ +..+..++ ..-.+.++++++.|.+++.+.......+..++-
T Consensus 96 ~aElw~~I~~~I~~Ik~dYldvYa~IV--------------------k~YTdyyQdfN~aLSklS~~IsaGkDGN~IKFd 155 (308)
T 3nzz_A 96 DAEIWDMVSQNISAIGDSYLGVYENVV--------------------AVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLD 155 (308)
T ss_dssp --HHHHHHHHHHHHHHHHTHHHHHHHH--------------------HHHHHHHHHHHHHHTTGGGGEEECSSTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhcCCCCCeeeec
Confidence 567888999999999977 55555544 456788999999999999988642333358888
Q ss_pred HHHHHHHHHHHHHHHH
Q 030353 112 DAKLAKDFQSVLKEFQ 127 (179)
Q Consensus 112 ~eKL~~dF~~aL~~FQ 127 (179)
...|.++|...++.|-
T Consensus 156 ~~sfkkaL~~li~KY~ 171 (308)
T 3nzz_A 156 VTSLKNDLNSLVNKYN 171 (308)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888888887775
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.16 E-value=22 Score=32.47 Aligned_cols=101 Identities=13% Similarity=0.178 Sum_probs=58.7
Q ss_pred CcchhHHHHHHHHHHHHHhhHHHHHHHHHh----cCCC----CCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030353 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS----LGTP----KDT--------LDLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (179)
Q Consensus 31 ~eF~~L~~~Is~~If~In~nVs~L~klv~~----LGT~----kDt--------~~LR~kl~~~~~~t~~L~K~t~~~lk~ 94 (179)
.+|...+++|..+|+.|..+-+.....++. |-.. .|+ .+||.+|..+..++..-+ ++
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-------sn 132 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-------QH 132 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-------HH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 367777888888888887775555554443 3211 111 145555555554444444 33
Q ss_pred hhhhccCCCCchhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhcC
Q 030353 95 ASEADHHTEVSPIRKIADAKLAKDFQSV-----------------LKEFQKAQRLAAERETTYA 141 (179)
Q Consensus 95 L~~~~~~~~~~~~~k~~~eKL~~dF~~a-----------------L~~FQ~~Qr~~aekek~~~ 141 (179)
|..|.. .+ ..+....+||-.|+..- +..|..+||+..+.....+
T Consensus 133 IrvLQs--nL-edq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 133 IQLLQK--NV-RAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHH--HH-HHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH--HH-HHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 333321 01 23556667777777655 4679999999988875444
No 13
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.91 E-value=32 Score=25.02 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhccC-CCCc---hhHHHHH
Q 030353 43 AIFQINTAVSSFYRLVNSLGTPKDTLDLRDKL------HKTRLHIGQLVKDTSSKLKQASEADHH-TEVS---PIRKIAD 112 (179)
Q Consensus 43 ~If~In~nVs~L~klv~~LGT~kDt~~LR~kl------~~~~~~t~~L~K~t~~~lk~L~~~~~~-~~~~---~~~k~~~ 112 (179)
....|.++|..|..-+..| ..+...| .++.+++..+...|++.+++.+..... .... ....-..
T Consensus 15 l~~~is~~I~~In~~vs~l------~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 15 IIQTCSGNIQRISQATAQI------KNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 4455666666666666665 2344444 667777777777777777776665431 0111 0111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 030353 113 AKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKE 147 (179)
Q Consensus 113 eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~~ar~a 147 (179)
.|+. ..-..++|+.+-+.|...+|.+..+-+..
T Consensus 89 ~k~q--~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 89 QRLQ--KERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 34556777777777777777666644333
No 14
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=66.46 E-value=74 Score=28.59 Aligned_cols=92 Identities=7% Similarity=-0.041 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 030353 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLG-TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (179)
Q Consensus 33 F~~L~~~Is~~If~In~nVs~L~klv~~LG-T~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (179)
-=+|...|..+=..|...|..|++.+..+. +..+...+-..|.++..+.-..+++....+.+++. ++.+++.|.
T Consensus 49 GCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~-----eLe~ri~yI 123 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVST-----ELRRRIVTL 123 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-----HHHHHHHHH
Confidence 345667777777777888888888777764 55554444444444444444444444444444443 456678888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030353 112 DAKLAKDFQSVLKEFQKAQ 130 (179)
Q Consensus 112 ~eKL~~dF~~aL~~FQ~~Q 130 (179)
++|+...| ..|+-.|.+=
T Consensus 124 K~kVd~qi-~~IrvLq~~l 141 (491)
T 1m1j_A 124 KQRVATQV-NRIKALQNSI 141 (491)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 88877777 5555555443
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.73 E-value=52 Score=28.79 Aligned_cols=26 Identities=0% Similarity=-0.038 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 36 PSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 36 L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
|...|..+=..|...|..|+..+..+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55555555566666666666655554
No 16
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=64.39 E-value=16 Score=20.26 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353 70 LRDKLHKTRLHIGQLVKDTSSKLKQA 95 (179)
Q Consensus 70 LR~kl~~~~~~t~~L~K~t~~~lk~L 95 (179)
||.++.....++.+-.|.+.+.|.-|
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgl 27 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68888888888888888888877654
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=54.92 E-value=34 Score=21.78 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (179)
Q Consensus 36 L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~-~LR~kl~~~~~~t~~L~K~t~~~lk~L 95 (179)
+=.....+|-.|.+.|+.|+.+-..+|+--|.+ .+-+.|......+...++.++..++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999998876654 366666777777777777777666654
No 18
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=52.62 E-value=29 Score=22.47 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH
Q 030353 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL 68 (179)
Q Consensus 36 L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~ 68 (179)
.=+.+..+|-++.+.|+.|+.+-..+|+--|.+
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~Q 36 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQ 36 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345789999999999999999999998877765
No 19
>3r9v_A Invasin IPAD; type III secretion system, TIP protein, deoxycholate, cell I; HET: DXC; 1.90A {Shigella flexneri} SCOP: a.250.1.1 PDB: 2jaa_A 2j0n_A
Probab=51.76 E-value=45 Score=28.01 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CchhHHH
Q 030353 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTE-VSPIRKI 110 (179)
Q Consensus 33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~-~~~~~k~ 110 (179)
+..++..|+..|-.|+.+ +..+..++ .+-.+.++++++.|.++..+..... ..+..++
T Consensus 95 yaElwa~Is~~I~~IksdYld~Ya~lv--------------------k~yTdyyQd~N~~lsk~s~~I~agg~DGN~IkF 154 (286)
T 3r9v_A 95 HRELWAKIANSINDINEQYLKVYEHAV--------------------SSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKL 154 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH--------------------HHHHHHHHHHHHHHHHHGGGEEEESSSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCCeeee
Confidence 457888888888888877 55555544 4467888999999999999886312 2334788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030353 111 ADAKLAKDFQSVLKEFQK 128 (179)
Q Consensus 111 ~~eKL~~dF~~aL~~FQ~ 128 (179)
-...+.+.|...+.+|..
T Consensus 155 d~~~lk~~l~~f~~kY~~ 172 (286)
T 3r9v_A 155 QVNSLKKALEELKEKYKD 172 (286)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 888888888888877763
No 20
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.24 E-value=39 Score=22.93 Aligned_cols=64 Identities=8% Similarity=0.148 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030353 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (179)
Q Consensus 33 F~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~-~LR~kl~~~~~~t~~L~K~t~~~lk~L~ 96 (179)
-+..-+....+|-.|.+.|+.|+.+-..+|+--|.+ .+-+.|..-...+...++.++..+++|.
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 356777999999999999999999999999877755 3667777777777777777777776654
No 21
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=50.65 E-value=61 Score=27.45 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHHHHhh-HHHHHHHHHhc------CCCC---CcHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhh
Q 030353 42 AAIFQINTA-VSSFYRLVNSL------GTPK---DTLDLRDKL---------------HKTRLHIGQLVKDTSSKLKQAS 96 (179)
Q Consensus 42 ~~If~In~n-Vs~L~klv~~L------GT~k---Dt~~LR~kl---------------~~~~~~t~~L~K~t~~~lk~L~ 96 (179)
+.++.|++. +..++.++..+ |.++ --.+|=++| .++...-.+.++++++.|.+++
T Consensus 58 s~~~n~~s~~~k~~kd~~~~Iiqki~~~~~~~~~S~selw~~I~~~I~~I~~~Yld~Ya~ivk~YTdyyQd~N~~LSkls 137 (305)
T 3zqe_A 58 NLYRNAQSNTVKVFKDIDAAIIQNFRGGSGGTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMG 137 (305)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHCC----------CCHHHHHHHHHTSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTSG
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777 66677776665 1222 123455555 5566677788899999999999
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 030353 97 EADHHTEVSPIRKIADAKLAKDFQSVLKEFQ 127 (179)
Q Consensus 97 ~~~~~~~~~~~~k~~~eKL~~dF~~aL~~FQ 127 (179)
.+.......+..++-...|.++|...+..|-
T Consensus 138 ~~IsaGkDGN~IkFd~~s~k~al~~l~~KY~ 168 (305)
T 3zqe_A 138 GWLLPGKDGNTVKLDVTSLKNDLNSLVNKYN 168 (305)
T ss_dssp GGC-------CEEECHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCeeeecHHHHHHHHHHHHHhcc
Confidence 8876422333578888888888888887774
No 22
>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS, plasmid, virulence; 3.00A {Shigella flexneri} SCOP: a.250.1.1
Probab=49.75 E-value=58 Score=27.74 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CchhHHH
Q 030353 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTE-VSPIRKI 110 (179)
Q Consensus 33 F~~L~~~Is~~If~In~n-Vs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~-~~~~~k~ 110 (179)
...++..|+..|-.|+.+ +.-+..++ .+-.+.++++++.|.+++.+..... .....++
T Consensus 117 ~~elw~~Is~~I~~I~sdYld~Ya~iv--------------------k~yTdyyQ~~ne~lskls~~I~aGg~DGn~IkF 176 (318)
T 2j0o_A 117 HRELWAKIANSINDINEQYLKVYEHAV--------------------SSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKL 176 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH--------------------HHHHHHHHHHHHHHHHHGGGEEECSSSSSCEEE
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCeeee
Confidence 467899999999999877 55555444 4467888999999999999886312 2335888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030353 111 ADAKLAKDFQSVLKEFQK 128 (179)
Q Consensus 111 ~~eKL~~dF~~aL~~FQ~ 128 (179)
-...+.++|...+..|..
T Consensus 177 d~~~~k~~l~~~~~kY~~ 194 (318)
T 2j0o_A 177 QVNSLKKALEELKEKYKD 194 (318)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 888888888888887774
No 23
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=49.09 E-value=23 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHH
Q 030353 84 LVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKE 125 (179)
Q Consensus 84 L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eK-L~~dF~~aL~~ 125 (179)
|.+++++.|.=|..+..+.++.....-..+| |..||-.++.+
T Consensus 5 L~RDv~RaiELle~lq~sgevp~~KL~aLq~VLqSdF~~aVRE 47 (53)
T 1zl8_A 5 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVRE 47 (53)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555443444433333455 78888888766
No 24
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=47.78 E-value=1.3e+02 Score=25.44 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=17.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHH
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYR 56 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~k 56 (179)
+|.|..........|-.+...+..|-+
T Consensus 39 SP~FRa~l~~~E~~~~~l~~~l~kl~k 65 (407)
T 4h8s_A 39 SPQTRSLLSVFEEDAGTLTDYTNQLLQ 65 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577877777777777666655444333
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.97 E-value=31 Score=21.68 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 37 SQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 37 ~~~Is~~If~In~nVs~L~klv~~L 61 (179)
.+.+++.|..+|..|..|...+..|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888766553
No 26
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=41.25 E-value=13 Score=31.46 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 030353 75 HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQ 127 (179)
Q Consensus 75 ~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL~~dF~~aL~~FQ 127 (179)
..+..+-.+.++++|+.|.+++.+... ...+..++-...+.+.|...+..|.
T Consensus 141 a~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~kY~ 192 (303)
T 3nft_A 141 ATIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDHLP 192 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHhcC
Confidence 445666788899999999999998875 3344488888888888888877774
No 27
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=40.06 E-value=36 Score=23.24 Aligned_cols=62 Identities=5% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353 34 QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (179)
Q Consensus 34 ~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~-~LR~kl~~~~~~t~~L~K~t~~~lk~L 95 (179)
+..-+.+..+|-.|.+.|+.|+.+-..+|+--|.+ .+-+.|......+...++..+..+++|
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999999999877755 255566666666666666665555544
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.81 E-value=1.5e+02 Score=27.10 Aligned_cols=27 Identities=0% Similarity=-0.045 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 35 DPSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 35 ~L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
+|...|..+=..|...|..|+..+..|
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 345555555566666666666666665
No 29
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.88 E-value=1.2e+02 Score=22.21 Aligned_cols=49 Identities=6% Similarity=-0.021 Sum_probs=35.2
Q ss_pred HHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030353 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (179)
Q Consensus 47 In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~ 97 (179)
+...-..+..+...|.++.+ ++.++|..+.+...++-|++...-.++..
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~--~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPA--KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677777877654 68899999998888888887777666544
No 30
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.11 E-value=55 Score=20.68 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (179)
Q Consensus 39 ~Is~~If~In~nVs~L~klv~~LGT~kDt~-~LR~kl~~~~~~t~~L~K~t~~~lk~L 95 (179)
....+|-.|.+.|+.|+.+...+|.--+.+ .+-+.|..-...+...++.++..++++
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888888888888888765544 355666666666666666666665544
No 31
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=31.95 E-value=1.5e+02 Score=21.78 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 030353 111 ADAKLAKDFQSVLK 124 (179)
Q Consensus 111 ~~eKL~~dF~~aL~ 124 (179)
.-.|+.+|+...+.
T Consensus 45 iAAKIIkDisdkId 58 (129)
T 3f6n_A 45 VAAKIVNDLTKLIN 58 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34555555555444
No 32
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=30.34 E-value=2e+02 Score=22.61 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHH-----------------HHHHHH
Q 030353 65 KDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQS-----------------VLKEFQ 127 (179)
Q Consensus 65 kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL~~dF~~-----------------aL~~FQ 127 (179)
.|+|..|..|...-..+..+-+-+...+|....+. +..+.-.-...+++.-+.. +|..|-
T Consensus 14 ~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~---~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~ 90 (265)
T 2q12_A 14 EDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIY---DAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFS 90 (265)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 030353 128 KAQRLAAERETT 139 (179)
Q Consensus 128 ~~Qr~~aekek~ 139 (179)
...+....-...
T Consensus 91 ~~l~ei~~~~~~ 102 (265)
T 2q12_A 91 KVIDELSSCHAV 102 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 33
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=30.04 E-value=1.3e+02 Score=20.31 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030353 78 RLHIGQLVKDTSSKLKQA 95 (179)
Q Consensus 78 ~~~t~~L~K~t~~~lk~L 95 (179)
....++|++++|++|-.|
T Consensus 59 v~~~r~lA~~iNEcV~~~ 76 (77)
T 1zva_A 59 IDRLNEVAKNLNESLIDL 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455677777788777443
No 34
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.07 E-value=1.9e+02 Score=21.92 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCC---CC-cH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH
Q 030353 39 AVAAAIFQINTAVSSFYRLVNSLGTP---KD-TL----DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKI 110 (179)
Q Consensus 39 ~Is~~If~In~nVs~L~klv~~LGT~---kD-t~----~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~ 110 (179)
+..+-|-.+++++.-|..++..+-.. .+ .. +|-..+...+..+.+|+.++. .+-....
T Consensus 57 k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~--------------ddee~L~ 122 (158)
T 1naf_A 57 KRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTE--------------DNDEALA 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCC--------------SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHcc--------------CCHHHHH
Confidence 33448888999999999999987321 11 11 233333444444444443321 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030353 111 ADAKLAKDFQSVLKEFQKAQ 130 (179)
Q Consensus 111 ~~eKL~~dF~~aL~~FQ~~Q 130 (179)
..=.+..++..++..|..+-
T Consensus 123 elL~~ND~Ln~vl~kY~~~~ 142 (158)
T 1naf_A 123 EILQANDNLTQVINLYKQLV 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 22346667888888888773
No 35
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.88 E-value=1.6e+02 Score=20.51 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=34.5
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKT 77 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~ 77 (179)
|...+...+..=...++..++.|..-...|||.+|.. |.+..+.
T Consensus 10 Elr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqk--r~kFee~ 53 (94)
T 3fx7_A 10 EVREFVGHLERFKELLREEVNSLSNHFHNLESWRDAR--RDKFSEV 53 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHH--HHHHHHH
Confidence 5667777888888888889999999999999999954 4444333
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.20 E-value=1e+02 Score=19.09 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030353 63 TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (179)
Q Consensus 63 T~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~ 97 (179)
+.-|-..|+..+.+++.++..|.+...+.=.+|..
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566678888899999888888877776666653
No 37
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=25.69 E-value=2.3e+02 Score=21.90 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030353 41 AAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (179)
Q Consensus 41 s~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~ 99 (179)
...+-+|.+-+-.++-.+.-|..... ++.+++..++-.|..|+..+.+.++.+....
T Consensus 72 e~CL~~i~sGL~~yQ~~L~~L~~~~~--~~~~~~~~Lq~d~~~L~~~i~q~~k~~~~~~ 128 (174)
T 1bgc_A 72 RGCLNQLHGGLFLYQGLLQALAGISP--ELAPTLDTLQLDVTDFATNIWLQMEDLGAAP 128 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSST--TTHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhCc--ccchHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 45666777777777777777755443 4668999999999999999999999986653
No 38
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=25.65 E-value=99 Score=20.47 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030353 41 AAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (179)
Q Consensus 41 s~~If~In~nVs~L~klv~~LGT~kDt~-~LR~kl~~~~~~t~~L~K~t~~~lk~L~~ 97 (179)
..+|-.|...|..|+.+...+|.--|.. .+-+.|..-...+...++.++..++++..
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777655543 36666777777777777777777766655
No 39
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=25.04 E-value=1.4e+02 Score=21.95 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 030353 34 QDPSQAVAAAIFQINTAVSSFYRLVNSLGT 63 (179)
Q Consensus 34 ~~L~~~Is~~If~In~nVs~L~klv~~LGT 63 (179)
..+...|+.-+..+-.-+..++.++..+|.
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445556666666666666677777777776
No 40
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=25.02 E-value=2.3e+02 Score=21.65 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCCchhH
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH---TEVSPIR 108 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~---~~~~~~~ 108 (179)
|.+...+.+...=+.+.+.|+.|-.|+...|...+-....+.+...+..+...+-.+...|..+-.+... .......
T Consensus 8 dld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d 87 (163)
T 1z23_A 8 ELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSD 87 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5566778888888888899999999987765443311000112222222222333333333333332110 0111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030353 109 KIADAKLAKDFQSVLKEFQKAQRLAAERET 138 (179)
Q Consensus 109 k~~~eKL~~dF~~aL~~FQ~~Qr~~aekek 138 (179)
+....||.+.++..-..||-+.+.......
T Consensus 88 ~~L~~kl~r~Lq~l~ds~qiL~~~~~~Ld~ 117 (163)
T 1z23_A 88 RTLHAKLSRQLQKMEDVYQTLVVHGQVLDS 117 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 456778888888888888888887666543
No 41
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=24.80 E-value=1.5e+02 Score=19.36 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=20.9
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
+....+..+...-..|...+..|...+..|
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777766
No 42
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.73 E-value=1.8e+02 Score=20.34 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=20.6
Q ss_pred CCcchhHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 30 ~~eF~~L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
+.-|.+|+..|..--..++.-|..|++-+..|
T Consensus 35 s~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666555
No 43
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.92 E-value=1.4e+02 Score=18.87 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=38.2
Q ss_pred HHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 030353 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQL-----VKDTSSKLKQASE 97 (179)
Q Consensus 47 In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L-----~K~t~~~lk~L~~ 97 (179)
+-..|..|+.-++.||....-.+|..+-.++..++.+| +|.+.+.|++|..
T Consensus 7 leekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkklee 62 (67)
T 1lq7_A 7 LEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEE 62 (67)
T ss_dssp HHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 44567888999999999888888888888887777665 5666666666543
No 44
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=23.48 E-value=1.7e+02 Score=19.67 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 33 F~~L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
|+.....|+..+-..+..++.++..|+.=
T Consensus 14 FN~A~~~i~~g~~tts~AL~kiQdVVN~q 42 (77)
T 2bez_C 14 FNKAISQIQESLTTTSTALGKLQDVVNQN 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777777666653
No 45
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.31 E-value=1.9e+02 Score=20.08 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHhhHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030353 45 FQINTAVSSFYRLVNS--LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (179)
Q Consensus 45 f~In~nVs~L~klv~~--LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~ 97 (179)
..||..|+.|++++.. +| +| |.++.-+..+- +=+-.+++.+.++..
T Consensus 11 ~hineKIs~ikk~L~Lr~~g--qd-P~lk~~L~Kig----~Ei~~l~eLLn~~E~ 58 (91)
T 4aj5_A 11 SHVNEKIGNIKKTLSLRNCG--QE-PTLKTVLNKIG----DEIIVINELLNKLEL 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HC-HHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cC-hhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4678888888886654 55 44 66774444433 334556666666654
No 46
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=23.22 E-value=2.6e+02 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 030353 113 AKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (179)
Q Consensus 113 eKL~~dF~~aL~~FQ~~Qr~~aekek~~~~ 142 (179)
++..+++..+++.|-.+++.+-..++....
T Consensus 106 Q~AtD~y~~Ainny~~Ads~~~~lekKvn~ 135 (201)
T 3u0c_A 106 EGLTRDYEKQINKLKNADSKIKDLENKINQ 135 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 567888889999998888888777765443
No 47
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=21.97 E-value=2.2e+02 Score=20.18 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHH
Q 030353 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKD 118 (179)
Q Consensus 39 ~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL~~d 118 (179)
.+..=...|+.....|+.++..+| +.+.+..+...|..|-+.+++..-=|..+ |
T Consensus 32 ~~~~F~~~F~~~~~~Ie~~l~~~~-------~~~~ld~i~~~I~~Lqk~v~das~fLp~Y-------------------D 85 (111)
T 2l3l_A 32 NSHFFVATFARERAAVEELLERAE-------SVERLEEAASRLQGLQKLINDSVFFLAAY-------------------D 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------SHHHHHHHHHHHHHHHHHHHHSTTTSCHH-------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHHHHHHHHHHHHhhhccHH-------------------H
Confidence 444555567777888888888776 45556666555555555444443323222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 030353 119 FQSVLKEFQKAQRLAAERETTYAP 142 (179)
Q Consensus 119 F~~aL~~FQ~~Qr~~aekek~~~~ 142 (179)
.+.+...-+.+|....+......|
T Consensus 86 ~R~~q~~i~~L~~~l~e~r~~l~P 109 (111)
T 2l3l_A 86 LRQGQEALARLQAALAERRRGLQP 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555555666666666555554
No 48
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.35 E-value=3.1e+02 Score=21.73 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030353 112 DAKLAKDFQSVLKEFQKAQRLAAERE 137 (179)
Q Consensus 112 ~eKL~~dF~~aL~~FQ~~Qr~~aeke 137 (179)
..++.+||+..+++||..=+...+|=
T Consensus 158 l~h~RN~yq~i~q~Fqi~lk~LtdkC 183 (204)
T 2jqq_A 158 IHHLRNDYQDLLQEFQISLKILTEKC 183 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999877763
No 49
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.95 E-value=2.4e+02 Score=20.41 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCCCC--CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPK--DTL----DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVS 105 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT~k--Dt~----~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~ 105 (179)
.|....+.|..+|-++.+......++...-+++. +-. +|+..|..+.....+|.+.+.-.=+....+ ..+
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF----~l~ 103 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF----KLP 103 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----CCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc----CCC
Confidence 4888899999999999998888877666544431 212 234444444444444443333222222111 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030353 106 PIRKIADAKLAKDFQSVLKEFQ 127 (179)
Q Consensus 106 ~~~k~~~eKL~~dF~~aL~~FQ 127 (179)
..-.-.+.+.+.+.+..+.+.+
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233345556666666665543
No 50
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.85 E-value=3e+02 Score=21.33 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhc
Q 030353 41 AAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 41 s~~If~In~nVs~L~klv~~L 61 (179)
.+-|-.++++|.-|..++..+
T Consensus 75 ~~eLe~V~~nv~LL~EML~~~ 95 (186)
T 1oxz_A 75 VNAIEEVNNNVKLLTEMVMSH 95 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 346777888888888898887
No 51
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.65 E-value=2.2e+02 Score=19.66 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 030353 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT 63 (179)
Q Consensus 32 eF~~L~~~Is~~If~In~nVs~L~klv~~LGT 63 (179)
=|..++.+-...|..--+.|..+++.+..+..
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 37888889999999999999999988877643
No 52
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=20.44 E-value=2.1e+02 Score=21.63 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHH
Q 030353 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLA 116 (179)
Q Consensus 37 ~~~Is~~If~In~nVs~L~klv~~LGT~kDt~~LR~kl~~~~~~t~~L~K~t~~~lk~L~~~~~~~~~~~~~k~~~eKL~ 116 (179)
.+.-.+-|++++.-.++|+..+..-... -.+-.+.++.-+..|.+.|.+..- +++++-.-.++||.
T Consensus 44 KdGsDsvLqqls~~s~slq~al~dangk---------akeALEq~R~nlektAeeLRkaHP-----dVE~qA~~lrdkLq 109 (166)
T 1eq1_A 44 KDGSDSVLQQLSAFSSSLQGAISDANGK---------AKEALEQARQNVEKTAEELRKAHP-----DVEKEANAFKDKLQ 109 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSST---------HHHHHHHHHHHHHHHHHGGGGCSH-----HHHHTCSSSHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHhcccch---------HHHHHHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHHH
Confidence 3344455666666666666655433211 112223333333334333332211 22333333456666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030353 117 KDFQSVLKEFQKAQRLA 133 (179)
Q Consensus 117 ~dF~~aL~~FQ~~Qr~~ 133 (179)
--.+..+++-|++-+..
T Consensus 110 aAVQ~t~qesqkLaKeV 126 (166)
T 1eq1_A 110 AAVQTTVQESQKLAKEV 126 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666555554443
No 53
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.27 E-value=1.8e+02 Score=18.63 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 030353 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (179)
Q Consensus 33 F~~L~~~Is~~If~In~nVs~L~klv~~L 61 (179)
.......+......|...+..|+..+..|
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555
Done!