BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030354
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 226 bits (576), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/210 (57%), Positives = 139/210 (66%), Gaps = 33/210 (15%)
Query: 1 MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
M + + K SD KG WGFFK+PFR S N S+++++
Sbjct: 1 MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60
Query: 39 ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
N + G H S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61 HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120
Query: 88 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180
Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
NEKPM Q+SR KFKI+S+KVK +DYVPEL
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 210
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/202 (61%), Positives = 144/202 (71%), Gaps = 25/202 (12%)
Query: 1 MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSAS---------HQHQNQSNQQ-- 49
MA+ + KS SD + WG FKLPFR S + + + S+SSS + H +QN +Q
Sbjct: 1 MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60
Query: 50 --------VEG-SKTHGSS-----SVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRS 95
VEG + H S S+SSVARSLLP +RRLKLDP+ KLYFPYE GKQVRS
Sbjct: 61 FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120
Query: 96 AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK 155
AIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNEKPM QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180
Query: 156 SRDKFKIISMKVKADVDYVPEL 177
S KFKI+S+K+K DY+PEL
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPEL 202
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/186 (61%), Positives = 138/186 (74%), Gaps = 15/186 (8%)
Query: 1 MAIADRKSASDSKGWGFFKL-PFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSS 59
M I DR++ S K F+L PF Q ST+SS+S Q+ NQ+ + G++ S
Sbjct: 1 MPIGDRQNPSVEKKKNLFRLCPFWQR------RSTTSSSSTQNPNQNYRSRHGNRNTDIS 54
Query: 60 SVS-------SVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQ 112
+VS SVARSLLP RRRL+LDP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQ
Sbjct: 55 AVSKPPLTMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQ 114
Query: 113 TTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK-PMYQKSRDKFKIISMKVKADV 171
TTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNEK P+ QKS+ KFKI+S+KVK V
Sbjct: 115 TTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV 174
Query: 172 DYVPEL 177
+YVPEL
Sbjct: 175 EYVPEL 180
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
++L F +E KQ +K+ N ++++VAFK +TT+PK F+RP ++ P +S I
Sbjct: 15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR--- 71
Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPE 176
V L E P + +DKF + S V DVD +P+
Sbjct: 72 -VTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 82 KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
+L FP+E KQ ++++ N T+ VAFK +TT P+ +RP ++ PG+S T
Sbjct: 13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT--- 69
Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV 167
V + E P+ + +DKF + ++ V
Sbjct: 70 -VTMQAQKEAPLDMQCKDKFLVQTVVV 95
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 99 IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-KSR 157
I N S +AFK +TTAPK +RP A++APGE++ V F+ L E+P K R
Sbjct: 27 ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL---TEEPAADFKCR 82
Query: 158 DKFKIISMKVKADVD 172
DKF +I++ D++
Sbjct: 83 DKFLVITLPSPYDLN 97
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 141
KL F KQ IK++N + V FK +T+AP +RP AI+ ES+ + F
Sbjct: 7 KLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-F 65
Query: 142 VELPENNEKPMYQKSRDKFKIISMKVKA 169
+ LP++ + RDKF I+++ + A
Sbjct: 66 LGLPKSTADDEMDQKRDKFLIVTLPIPA 93
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L +DP + L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP ++ P S
Sbjct: 6 LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKI 162
V + E P + +DKF +
Sbjct: 65 EV----LVTMQAQKEAPADLQCKDKFLL 88
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L ++P + L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP ++ P
Sbjct: 23 LTVEPLD-LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR--- 78
Query: 135 IATVFKFVELPENNEKPMYQKSRDKF 160
+T V + E P + +DKF
Sbjct: 79 -STCEVLVTMQAQKEAPSDMQCKDKF 103
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
+ L+ + + FP + V+ ++++NT+ + FK +TTAPK +RP G + E+
Sbjct: 1 MALECDSTIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EAN 57
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171
A + + P ++E K RDKF + S ++K ++
Sbjct: 58 SAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPEL 94
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 83 LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
L F + KQ +++ NT+ +VAFK +TT+PK +RP ++AP + TV
Sbjct: 13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--- 69
Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKAD 170
+ E P +DKF I S V A+
Sbjct: 70 -MQAFKEPPPDMVCKDKFLIQSTAVSAE 96
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L LDP L F V + +K++N S V FK +TTAP+ +RP I+ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 135 IATVF 139
+V
Sbjct: 75 TVSVM 79
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L LDP L F V + +K++N S V FK +TTAP+ +RP I+ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 135 IATVF 139
+V
Sbjct: 75 TVSVM 79
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L LDP L F V + +K++N S V FK +TTAP+ +RP I+ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTV 74
Query: 135 IATVF 139
+V
Sbjct: 75 TVSVM 79
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+PA +L F V + +K+ N + + FK +TTAPK +RP IL P S+
Sbjct: 8 LILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSI 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
V L N P +K++ KF + SM
Sbjct: 68 AVAVM----LQPFNYDP-NEKNKHKFMVQSM 93
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L +DP + + FP E K+V ++ + N ++++VAFK +TT K ++RP ++ P S
Sbjct: 177 LIIDPVD-VQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSC 235
Query: 135 IATVFKFVELPENNEKPMYQKSRDKF 160
V + E P + RDK
Sbjct: 236 EVLVI----MQALKEAPADMQCRDKL 257
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 85 FPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP 130
FP E KQ ++ + N + ++VAFK QTT PK ++P ++ P
Sbjct: 16 FPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLP 61
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L LDP + L F V + +K++N S V FK +TTAP+ +RP I+ PG +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIV 74
Query: 135 IATVF 139
+V
Sbjct: 75 TVSVM 79
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L + PA +LYF + ++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 328 LHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
Query: 135 IATV 138
V
Sbjct: 388 DIVV 391
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L + PA +LYF + ++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 328 LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
Query: 135 IATV 138
V
Sbjct: 388 DIIV 391
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L LDP + L F V + +K++N S V FK +TTAP+ +RP ++ PG +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIV 74
Query: 135 IATVF 139
+V
Sbjct: 75 TVSVM 79
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+P ++L F V + +K+ N + +V FK +TTAP+ +RP I+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170
+V L + P +KS+ KF + SM AD
Sbjct: 68 NVSVM----LQPFDYDP-NEKSKHKFMVQSMFAPAD 98
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2 SV=2
Length = 126
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 79 PANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
PA K+ F + ++I N + F F+TT PK M PP +L P ES+
Sbjct: 13 PAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+P ++L F V + +K+ N + +V FK +TTAP+ +RP I+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
+V L + P +KS+ KF + SM
Sbjct: 68 NVSVM----LQPFDYDP-NEKSKHKFMVQSM 93
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2 SV=2
Length = 126
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 79 PANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
PA K+ F + ++I N + F F+TT PK M PP +L P ES+
Sbjct: 13 PAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L+++P L FP+E KQ+ ++ + N + ++VAFK +TT + +RP ++ P
Sbjct: 7 LEIEPM-YLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK--- 62
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
+T V + E P +S +KF I S+
Sbjct: 63 -STCKVLVTMQAQKEVPSDMQSFEKFMIQSV 92
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+P ++L F V + +K+ N + +V FK +TTAP+ +RP I+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
+V L + P +KS+ KF + SM
Sbjct: 68 NVSVM----LQPFDYDP-NEKSKHKFMVQSM 93
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+P ++L F V + +K+ N + +V FK +TTAP+ +RP ++ G SL
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASL 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
+V L + P +KS+ KF + SM
Sbjct: 68 NVSVM----LQPFDYDP-NEKSKHKFMVQSM 93
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
L L+P ++L F V + +K+ N + +V FK +TT P+ +RP ++ G SL
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASL 67
Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISM 165
+V L + P +KS+ KF + SM
Sbjct: 68 NVSVM----LQPFDYDP-NEKSKHKFMVQSM 93
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2 SV=2
Length = 126
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 79 PANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
P K+ F + +++ N + + F F+TT PK M PP +L P ES+
Sbjct: 13 PNQKVVFNAPFDNKATYYVRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|Q21244|MSP63_CAEEL Major sperm protein 63 OS=Caenorhabditis elegans GN=msp-63 PE=2
SV=3
Length = 127
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ R IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYR--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
+ ++ + +L+F + I + N + V FK +TTAPK +RP + P
Sbjct: 1 MSVECSGELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPK--- 57
Query: 135 IATVFKFVELPENNEKPMYQ-KSRDKFKIISMKVKADVD 172
+TV V L E+P K RDKF I SM + D D
Sbjct: 58 -STVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAI-GDAD 94
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2 SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q9TVW5|MSP77_CAEEL Major sperm protein 77/79 OS=Caenorhabditis elegans GN=msp-77 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 OS=Caenorhabditis elegans GN=msp-55 PE=2
SV=3
Length = 127
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIVYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 73 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 130
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 131 AVLLAVSCDAFAFGQEDTNNDR 152
>sp|P53019|MSP33_CAEEL Major sperm protein 33 OS=Caenorhabditis elegans GN=msp-33 PE=2
SV=2
Length = 127
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +TT K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
++ V F F + NN++
Sbjct: 68 AVFLAVSCDAFAFGQEDTNNDR 89
>sp|P53020|MSP38_CAEEL Major sperm protein 38 OS=Caenorhabditis elegans GN=msp-38 PE=2
SV=2
Length = 127
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ + IK+ N+S + + +TT K + PP + P E
Sbjct: 10 IQTQPGTKIVFNAPYD--DKHTDHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVFDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans GN=msp-10
PE=2 SV=4
Length = 127
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 97 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 150
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q18461|MSP49_CAEEL Major sperm protein 49 OS=Caenorhabditis elegans GN=msp-49 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 75 LKLDPANKLYF--PYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
++ P K+ F PY+ IK+ N+S + + +T K + PP +L P E
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTINMKRLGVDPPCGVLDPKE 67
Query: 133 SLIATV----FKFVELPENNEK 150
+++ V F F + NN++
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q8BZB3|CO027_MOUSE Transmembrane protein C15orf27 homolog OS=Mus musculus PE=2 SV=3
Length = 538
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 20 LPFRQSGNSSNTTSTSSSASHQHQNQ-SNQQVEGSKTHGSSSVSSVAR-SLLPKRRR 74
LP + SGNS+ ++TS + SH + Q S+T GSS+ S R LLP + R
Sbjct: 373 LPLKLSGNSTCASATSETTSHSTCGSVTRAQSASSQTLGSSTDCSTPREELLPSKPR 429
>sp|A1RVG3|RL3_PYRIL 50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl3p PE=3 SV=1
Length = 342
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 79 PANKLYFPYEAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
P + LY GK+V A+ + + + F+ T P + + R + AP L A
Sbjct: 65 PTSPLY-----GKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAP--ELPAY 117
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL 177
+ + + LPE + K ++FK +++ V+A V P L
Sbjct: 118 LRRVLTLPEKVDVDKQMKKVEEFKDVAVDVRALVATQPHL 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,577,372
Number of Sequences: 539616
Number of extensions: 2170591
Number of successful extensions: 9324
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 8209
Number of HSP's gapped (non-prelim): 942
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)