Query 030354
Match_columns 179
No_of_seqs 138 out of 643
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 3.1E-30 1E-34 202.9 11.4 103 71-178 11-113 (147)
2 1z9l_A Vesicle-associated memb 100.0 7E-30 2.4E-34 195.9 12.5 103 71-178 7-109 (128)
3 1msp_A MSP, major sperm protei 100.0 4.2E-29 1.4E-33 192.3 12.0 102 72-178 6-109 (126)
4 1wic_A Hypothetical protein ri 100.0 8.7E-29 3E-33 196.2 9.2 100 71-178 15-118 (152)
5 1row_A SSP-19, MSP-domain prot 99.9 8.5E-27 2.9E-31 176.3 9.0 90 75-178 3-92 (109)
6 1m1s_A WR4; structural genomic 99.9 1.5E-25 5.3E-30 171.5 11.1 91 74-178 10-100 (116)
7 2ys4_A Hydrocephalus-inducing 98.3 2.7E-06 9.1E-11 63.5 9.2 80 73-164 24-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.0 2E-05 6.7E-10 57.0 8.0 67 73-140 8-78 (112)
9 3qbt_B Inositol polyphosphate 98.0 4.8E-05 1.6E-09 58.7 9.7 68 73-141 25-99 (140)
10 3qis_A Inositol polyphosphate 97.5 0.00043 1.5E-08 60.8 9.8 69 73-142 28-103 (366)
11 2qsv_A Uncharacterized protein 96.6 0.0085 2.9E-07 48.6 8.3 64 75-140 3-67 (220)
12 2qsv_A Uncharacterized protein 95.7 0.043 1.5E-06 44.4 8.3 66 72-140 117-183 (220)
13 3q48_A Chaperone CUPB2; IG fol 90.1 1.6 5.5E-05 36.5 9.0 63 74-140 29-101 (257)
14 2co7_B SAFB chaperone, putativ 88.0 4.3 0.00015 33.0 10.0 62 75-140 14-80 (221)
15 2xg5_A PAPD, chaperone protein 87.4 4.5 0.00015 32.8 9.7 62 75-140 2-71 (218)
16 4djm_A DRAB; chaperone, PILI; 85.4 5.7 0.0002 32.8 9.5 62 75-140 24-90 (239)
17 1yew_A Particulate methane mon 84.2 6.1 0.00021 35.2 9.5 69 71-141 246-335 (382)
18 1gyu_A Adapter-related protein 82.7 11 0.00039 28.5 9.4 68 91-166 47-120 (140)
19 1l4i_A SFAE protein; periplasm 81.7 10 0.00035 30.3 9.3 62 75-140 2-70 (206)
20 1klf_A FIMC chaperone, chapero 81.3 6.2 0.00021 31.6 7.9 62 75-140 2-69 (205)
21 3rfr_A PMOB; membrane, oxidore 81.1 5 0.00017 36.2 7.8 65 73-141 282-367 (419)
22 4ay0_A Chaperone protein CAF1M 79.8 23 0.00077 28.7 11.4 84 75-169 14-104 (218)
23 2g30_A AP-2 complex subunit be 78.2 3.4 0.00012 34.6 5.5 64 72-141 41-110 (258)
24 3zy7_A AP-1 complex subunit ga 77.7 15 0.00051 27.1 8.4 68 91-166 29-102 (122)
25 3gfu_C Chaperone protein FAEE; 77.1 21 0.00071 29.2 9.9 62 75-140 2-70 (224)
26 2r39_A FIXG-related protein; s 74.7 11 0.00038 27.2 6.9 59 82-140 21-81 (118)
27 3idu_A Uncharacterized protein 64.8 18 0.0006 27.0 6.3 52 88-140 30-82 (127)
28 3mnm_A ADP-ribosylation factor 58.0 53 0.0018 24.1 8.8 72 90-166 30-107 (123)
29 2eke_C Ubiquitin-like protein 57.4 16 0.00056 26.5 4.8 21 95-116 32-52 (106)
30 3isy_A Bsupi, intracellular pr 56.4 57 0.0019 24.2 7.7 52 89-140 16-86 (120)
31 3hs8_A Adaptor protein complex 50.9 41 0.0014 28.1 6.9 51 90-140 67-124 (273)
32 3hn9_A Lamin-B1; structural ge 46.9 24 0.0008 26.2 4.3 42 96-138 26-73 (123)
33 3jt0_A Lamin-B1; structural ge 44.6 63 0.0022 24.7 6.5 42 96-138 39-86 (144)
34 2lll_A Lamin-B2; immunoglobuli 43.0 30 0.001 26.4 4.4 42 96-138 35-83 (139)
35 2npi_A Protein CLP1; CLP1-PCF1 43.0 14 0.00048 32.9 2.9 47 71-121 37-83 (460)
36 3zy7_A AP-1 complex subunit ga 42.4 28 0.00097 25.5 4.1 49 65-113 50-98 (122)
37 3e38_A Two-domain protein cont 40.8 87 0.003 26.8 7.5 66 95-171 270-335 (343)
38 2xzz_A Protein-glutamine gamma 36.6 1.1E+02 0.0038 21.6 7.2 51 89-140 18-71 (102)
39 4gio_A Putative lipoprotein; u 36.3 77 0.0026 22.8 5.6 51 89-139 34-90 (107)
40 3o0l_A Uncharacterized protein 35.6 68 0.0023 23.2 5.2 52 88-139 35-93 (112)
41 1iu1_A Gamma1-adaptin; coated 31.8 1.6E+02 0.0055 22.1 9.3 68 91-166 53-126 (146)
42 1wm3_A Ubiquitin-like protein 31.4 48 0.0017 21.5 3.5 21 96-116 3-23 (72)
43 1gyu_A Adapter-related protein 30.9 55 0.0019 24.6 4.1 49 65-113 68-116 (140)
44 2huh_A Putative DNA mismatch r 29.9 1.9E+02 0.0065 22.3 7.3 67 95-172 30-96 (147)
45 3vta_A Cucumisin; subtilisin-l 29.4 1.9E+02 0.0064 26.4 8.2 50 91-140 537-589 (621)
46 2y78_A Peptidyl-prolyl CIS-tra 27.7 1E+02 0.0035 22.4 5.1 11 129-139 94-104 (133)
47 2io0_B Small ubiquitin-related 25.3 66 0.0023 22.2 3.5 22 95-116 6-27 (91)
48 2e9g_A AP-1 complex subunit ga 24.2 47 0.0016 24.5 2.6 49 65-113 59-107 (131)
49 1uh6_A Ubiquitin-like 5; beta- 24.1 78 0.0027 22.6 3.7 6 75-80 43-48 (100)
50 1klf_A FIMC chaperone, chapero 23.9 1.3E+02 0.0045 23.7 5.4 48 81-138 129-177 (205)
51 4ay0_A Chaperone protein CAF1M 23.6 82 0.0028 25.3 4.2 47 82-138 140-187 (218)
52 1iu1_A Gamma1-adaptin; coated 23.6 71 0.0024 24.1 3.6 53 61-113 69-122 (146)
53 3mnm_A ADP-ribosylation factor 23.4 1.3E+02 0.0046 21.9 5.0 49 65-113 52-103 (123)
54 3vta_A Cucumisin; subtilisin-l 22.5 1E+02 0.0035 28.2 5.1 39 69-109 561-599 (621)
55 2vhk_A Thaumatin-I; kinetics o 21.7 1E+02 0.0035 25.0 4.4 39 96-138 2-41 (206)
56 2io1_B Small ubiquitin-related 21.1 90 0.0031 21.6 3.5 22 95-116 8-29 (94)
57 1ifr_A Lamin A/C; immunoglobul 21.0 1E+02 0.0034 22.7 3.9 42 96-138 20-68 (121)
58 1kyf_A Alpha-adaptin C; protei 20.7 2.6E+02 0.0088 22.6 6.7 51 90-140 41-98 (247)
59 3nrf_A APAG protein; structura 20.5 2.1E+02 0.0073 20.9 5.5 47 93-139 29-85 (106)
60 1yfn_E Sigma-E factor negative 20.2 18 0.0006 21.3 -0.4 7 19-25 11-17 (32)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=3.1e-30 Score=202.90 Aligned_cols=103 Identities=27% Similarity=0.447 Sum_probs=93.1
Q ss_pred CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (179)
Q Consensus 71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~ 150 (179)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++ +|...+
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~- 86 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD- 86 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence 5678999998899999999999999999999999999999999999999999999999999999999998 675433
Q ss_pred CCCCCCCCeEEEEEEEeCCCccccCccC
Q 030354 151 PMYQKSRDKFKIISMKVKADVDYVPELV 178 (179)
Q Consensus 151 p~~~k~kDKFlVqs~~v~~~~d~~~elF 178 (179)
.+.+++|||+||++.++++.+.+.++|
T Consensus 87 -p~~~~kDKFlVqs~~~~~~~~d~~~~w 113 (147)
T 2cri_A 87 -PNEKSKHKFMVQTIFAPPNISDMEAVW 113 (147)
T ss_dssp -TTCCSCCCEEEEEEECCTTCCCHHHHH
T ss_pred -ccccCCCEEEEEEEEcCCCcccHHHHh
Confidence 357899999999999998775557776
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.96 E-value=7e-30 Score=195.91 Aligned_cols=103 Identities=26% Similarity=0.444 Sum_probs=92.7
Q ss_pred CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (179)
Q Consensus 71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~ 150 (179)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++ +|....
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~- 82 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD- 82 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999998 675433
Q ss_pred CCCCCCCCeEEEEEEEeCCCccccCccC
Q 030354 151 PMYQKSRDKFKIISMKVKADVDYVPELV 178 (179)
Q Consensus 151 p~~~k~kDKFlVqs~~v~~~~d~~~elF 178 (179)
.+.+++|||+||++.++++.+.+.++|
T Consensus 83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w 109 (128)
T 1z9l_A 83 -PNEKSKHKFMVQTIFAPPNISDMEAVW 109 (128)
T ss_dssp -TTCCCCCEEEEEEEECCTTCSCHHHHH
T ss_pred -cccccCCEEEEEEEECCCCcchHHHHh
Confidence 246899999999999998875557776
No 3
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=4.2e-29 Score=192.27 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCC
Q 030354 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 151 (179)
Q Consensus 72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p 151 (179)
...|.|+|.++|.|++++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|++ ++...+++
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~~ 82 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAATE 82 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGGS
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCCC
Confidence 345999999899999999999999999999999999999999999999999999999999999999998 67654432
Q ss_pred CCCCCCCeEEEEEEEeCCCc--cccCccC
Q 030354 152 MYQKSRDKFKIISMKVKADV--DYVPELV 178 (179)
Q Consensus 152 ~~~k~kDKFlVqs~~v~~~~--d~~~elF 178 (179)
...+|||+||++.++++. |+..++|
T Consensus 83 --~~~kDKf~Vq~~~~p~~~~~~~~~~wf 109 (126)
T 1msp_A 83 --DLNNDRITIEWTNTPDGAAKQFRREWF 109 (126)
T ss_dssp --CCSSCEEEEEEEECCTTCCSSCCTHHH
T ss_pred --ccCCCEEEEEEEECCCCcchhhhHHhh
Confidence 345999999999999886 6765554
No 4
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.95 E-value=8.7e-29 Score=196.21 Aligned_cols=100 Identities=26% Similarity=0.399 Sum_probs=88.2
Q ss_pred CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCC
Q 030354 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (179)
Q Consensus 71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~ 150 (179)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||++++|.|+| ++.. +
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~- 89 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T- 89 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999998 6653 2
Q ss_pred CCCCCCCCeEEEEEEEeC--CCc--cccCccC
Q 030354 151 PMYQKSRDKFKIISMKVK--ADV--DYVPELV 178 (179)
Q Consensus 151 p~~~k~kDKFlVqs~~v~--~~~--d~~~elF 178 (179)
.+++|||+||++.++ ++. +.+.++|
T Consensus 90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~w 118 (152)
T 1wic_A 90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFW 118 (152)
T ss_dssp ---CCSSCCEEEEEEECCSSCCCSHHHHHHHH
T ss_pred ---CCCCCEEEEEEEEcCCcCCCChhhHHHHH
Confidence 378999999999998 443 2335665
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=8.5e-27 Score=176.27 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=79.7
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 154 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~ 154 (179)
|.|+|. +|.|.++.+ .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|++ ++. .
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~ 68 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A 68 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence 789997 799998844 59999999999999999999999999999999999999999999998 553 2
Q ss_pred CCCCeEEEEEEEeCCCccccCccC
Q 030354 155 KSRDKFKIISMKVKADVDYVPELV 178 (179)
Q Consensus 155 k~kDKFlVqs~~v~~~~d~~~elF 178 (179)
.++|||+||++.++++...++|+|
T Consensus 69 ~~~dKflvq~~~~~~~~~d~~~~f 92 (109)
T 1row_A 69 PKEDKLVVHFASAPADATDAQAAF 92 (109)
T ss_dssp CEEEEEEEEEEECCTTCSCHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCHHHHh
Confidence 369999999999987754447777
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.93 E-value=1.5e-25 Score=171.50 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=80.6
Q ss_pred cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCC
Q 030354 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY 153 (179)
Q Consensus 74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~ 153 (179)
.+.++|. +|.|+++.| .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|++ +++ +
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~---~--- 76 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG---P--- 76 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC---C---
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC---C---
Confidence 5889995 999998754 69999999999999999999999999999999999999999999998 563 1
Q ss_pred CCCCCeEEEEEEEeCCCccccCccC
Q 030354 154 QKSRDKFKIISMKVKADVDYVPELV 178 (179)
Q Consensus 154 ~k~kDKFlVqs~~v~~~~d~~~elF 178 (179)
.++|||+||++.++++...++|+|
T Consensus 77 -~k~DKflVq~~~~~~d~~d~~~~f 100 (116)
T 1m1s_A 77 -PKEDKIVIQYAEVPAEETDPMAPF 100 (116)
T ss_dssp -SCEEEEEEEEEEECTTCCCTTHHH
T ss_pred -CCCCEEEEEEEECCCCCCCHHHHH
Confidence 359999999999997664458887
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=2.7e-06 Score=63.48 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=63.6
Q ss_pred CcEEEcCCCceEeecCC-CceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCC
Q 030354 73 RRLKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 151 (179)
Q Consensus 73 ~lL~I~P~~eL~F~~~~-~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p 151 (179)
..|++ | +.|.|..-. +......|.|+|.++.++.|++++.+ -|.|.|..|.|.||+++.|.|+. .|...
T Consensus 24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F---~P~~~--- 93 (122)
T 2ys4_A 24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEF---EPQSV--- 93 (122)
T ss_dssp CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEE---CCSSS---
T ss_pred cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEE---EcCCC---
Confidence 34555 6 589987644 77788999999999999999999854 69999999999999999999998 66532
Q ss_pred CCCCCCCeEEEEE
Q 030354 152 MYQKSRDKFKIIS 164 (179)
Q Consensus 152 ~~~k~kDKFlVqs 164 (179)
......+.|..
T Consensus 94 --g~~~~~l~v~~ 104 (122)
T 2ys4_A 94 --GDHSGRLIVCY 104 (122)
T ss_dssp --BCCCCBCEEEE
T ss_pred --ccEEEEEEEEE
Confidence 34566666554
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=2e-05 Score=57.03 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=57.1
Q ss_pred CcEEEcCCCceEeecC-CCceEEEEEEEEcCCCCeEEEEeccCCC---ceeEecCCeeEeCCCCeEEEEEEe
Q 030354 73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 73 ~lL~I~P~~eL~F~~~-~~k~~~s~LtL~N~s~~~VAFKVKTTaP---~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
..+.+++. .|.|-.- .|...+..++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 55889995 8999764 4777889999999999999999864221 569999999999999999999998
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.97 E-value=4.8e-05 Score=58.67 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=57.9
Q ss_pred CcEEEcCCCceEeec-CCCceEEEEEEEEcCCCCeEEEEeccC------CCceeEecCCeeEeCCCCeEEEEEEee
Q 030354 73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF 141 (179)
Q Consensus 73 ~lL~I~P~~eL~F~~-~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pgesv~I~I~l~ 141 (179)
+-+.|++ ++|.|-. ..++..+..|+|+|++.-+.-|++.-. .+..+.|.|..|.|.||+++.|.|++.
T Consensus 25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 4577888 5999985 457788899999999999999998853 345789999999999999999999984
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.53 E-value=0.00043 Score=60.77 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=58.2
Q ss_pred CcEEEcCCCceEeec-CCCceEEEEEEEEcCCCCeEEEEeccC------CCceeEecCCeeEeCCCCeEEEEEEeec
Q 030354 73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFV 142 (179)
Q Consensus 73 ~lL~I~P~~eL~F~~-~~~k~~~s~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pgesv~I~I~l~~ 142 (179)
.-+.|++ ++|.|.. .++...+..|+|+|++.-++.|++... .+..++|.|..|.|.||+++.|.|++.+
T Consensus 28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 4578888 5999965 568889999999999999999998753 2344789999999999999999999853
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.57 E-value=0.0085 Score=48.57 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=55.4
Q ss_pred EEEcCCCceEeecCC-CceEEEEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~-~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|+++| +.|.|..-. |+.....++++|+++.++-++.-.. |..+.+++..+.|.||++..|.|++
T Consensus 3 i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 3 LQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp EEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred eEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 88999 599998744 6666789999999999999886543 7778889999999999999999998
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.69 E-value=0.043 Score=44.35 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=56.3
Q ss_pred CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEE-EeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
...|.++ . .+.|-.-.|+..+..++|+|..+.++.. +|+++. +...+.++.+.|.||++..|.|++
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 3458888 4 8999854488888999999999999877 788765 678888999999999999999998
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=90.05 E-value=1.6 Score=36.47 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred cEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCC----------CceeEecCCeeEeCCCCeEEEEEEe
Q 030354 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----------PKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 74 lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTa----------P~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
-|.|+|. -+.|+..... .+|+|+|.++.++.--+-..+ ..-|.|-|+.--|+||+...|.|.+
T Consensus 29 ~v~i~~T-RvIy~~~~k~---~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~ 101 (257)
T 3q48_A 29 GLIAQGT-RVVFPASERE---VTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY 101 (257)
T ss_dssp --CCSCS-EEEEETTCSE---EEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE
T ss_pred eEEEcce-EEEEeCCCcE---EEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE
Confidence 4777884 7777754333 899999999887654433211 1249999999999999999999986
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=88.03 E-value=4.3 Score=33.00 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=47.1
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccC-----CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|.|++. -+.|+..... ..|+|+|.++.++.--+..- ...-|.|-|+.--|+||+...|.|.+
T Consensus 14 v~i~~T-RvIy~~~~k~---~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 80 (221)
T 2co7_B 14 VKLGAT-RVIYHAGTAG---ATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR 80 (221)
T ss_dssp CEESCS-EEEEETTSSC---EEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred EEEcce-EEEEcCCCCE---EEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence 677884 7777755544 79999999988665443221 12359999999999999999999987
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=87.37 E-value=4.5 Score=32.79 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=46.5
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEEeccCC-------CceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFKVKTTa-------P~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|.|++. -+.|+..... ..|+|+|.++. ++.--+...+ ..-|.|-|+.--|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 71 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSEKS---MTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST 71 (218)
T ss_dssp EEESCS-EEEEETTSSE---EEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred cEeCce-EEEEeCCCCE---EEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567773 7777755443 79999999987 6655443221 2349999999999999999999987
No 16
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=85.40 E-value=5.7 Score=32.77 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=46.0
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc-----CCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT-----TaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|.|++. -+.|+..... ..|+|+|..+.++.--+.. ....-|.|-|+.--|+||+...|+|.+
T Consensus 24 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 90 (239)
T 4djm_A 24 LHLGAT-RVVYNPASSG---ETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR 90 (239)
T ss_dssp CEESCS-EEEECTTSSC---EEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred EEEcce-EEEEeCCCCE---EEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 678884 7777755444 7999999988765433221 112349999999999999999999986
No 17
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=84.19 E-value=6.1 Score=35.23 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=52.5
Q ss_pred CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEe---------cCC------------eeEeC
Q 030354 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RPP------------GAILA 129 (179)
Q Consensus 71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V---------rP~------------~GiI~ 129 (179)
....+.++-. .-+|. .+|+.++.+++++|.++++|-..=-+|+.-+|.- -|- ..=|.
T Consensus 246 ~~~~V~~~v~-~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~ 323 (382)
T 1yew_A 246 PAPTVSVKVE-DATYR-VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA 323 (382)
T ss_dssp CCCSEEEEEE-EEEEE-SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred CCCceEEEee-ccEEe-cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence 3556777774 66665 6799999999999999999998877777777743 221 12389
Q ss_pred CCCeEEEEEEee
Q 030354 130 PGESLIATVFKF 141 (179)
Q Consensus 130 Pgesv~I~I~l~ 141 (179)
|||+.+|.|...
T Consensus 324 PGETr~~~v~a~ 335 (382)
T 1yew_A 324 PGETRTVDVTAS 335 (382)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCceeEEEEEee
Confidence 999999999874
No 18
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=82.69 E-value=11 Score=28.53 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=42.9
Q ss_pred ceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCCCCe--EEEEEEeeccCCCCCCCCCCCCCCCeEEEEE
Q 030354 91 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES--LIATVFKFVELPENNEKPMYQKSRDKFKIIS 164 (179)
Q Consensus 91 k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pges--v~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs 164 (179)
+...-.++..|.+..+| -|.++.--|+.|.++ |..| .|.|+.. +.-.+.+ ..+. ..+.+=|+.|.+
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I--~n~~------~~~l~LR~klsY 118 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTY 118 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEE--eCCC------CCCEEEEEEEEE
Confidence 44566788999887655 788888888888665 6666 6888433 3333332 1332 123566777766
Q ss_pred EE
Q 030354 165 MK 166 (179)
Q Consensus 165 ~~ 166 (179)
..
T Consensus 119 ~~ 120 (140)
T 1gyu_A 119 NH 120 (140)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=81.75 E-value=10 Score=30.35 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=45.6
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCC-CeEEEEeccC-----CCceeEecCCeeEeCCCCeEEEEEE-e
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-K 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~-~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pgesv~I~I~-l 140 (179)
|.|++ .-+.|+..... ..|+|+|.++ .++.--+..- ...-|.|-|+.--|+||+...|.|. +
T Consensus 2 v~l~~-TRvIy~~~~k~---~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 70 (206)
T 1l4i_A 2 VALGA-TRVIYPEGQKQ---VQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA 70 (206)
T ss_dssp EEESC-SEEEEETTCSE---EEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred eEeCc-eEEEEeCCCcE---EEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec
Confidence 56777 37777755443 7999999986 6654443221 1235999999999999999999998 6
No 20
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=81.29 E-value=6.2 Score=31.63 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=46.2
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEEecc-----CCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFKVKT-----TaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|.|++. -+.|+..... ..|+|+|.++. ++.--+-. ....-|.|-|+.--|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~k~---~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 69 (205)
T 1klf_A 2 VALGAT-RVIYPAGQKQ---VQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD 69 (205)
T ss_dssp EEESCS-EEEEETTCSE---EEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEE
T ss_pred eEecce-EEEEeCCCcE---EEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567773 7777755443 79999999987 65544322 122459999999999999999999986
No 21
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=81.12 E-value=5 Score=36.16 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=50.4
Q ss_pred CcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEe---------------------cCCeeEeCCC
Q 030354 73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------------------RPPGAILAPG 131 (179)
Q Consensus 73 ~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V---------------------rP~~GiI~Pg 131 (179)
..++++-. .-+|. .+|+..+.+|+++|.++++|-..=-+|+.-+|.= .|+ -|.||
T Consensus 282 ~~V~~~v~-~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYK-VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEE-SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEe-cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34666664 56666 6789999999999999999988866777777651 122 59999
Q ss_pred CeEEEEEEee
Q 030354 132 ESLIATVFKF 141 (179)
Q Consensus 132 esv~I~I~l~ 141 (179)
|+.+|+|...
T Consensus 358 ETrt~~V~a~ 367 (419)
T 3rfr_A 358 ESKEIVVKIQ 367 (419)
T ss_dssp CEEEEEEEEE
T ss_pred cceEEEEEee
Confidence 9999999875
No 22
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=79.83 E-value=23 Score=28.69 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=54.3
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc-------CCCceeEecCCeeEeCCCCeEEEEEEeeccCCCC
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-------TAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT-------TaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~ 147 (179)
|.|+- .-+.|+..... .+|+|+|.++.++.--... +...-|.|-|+.--|+||+...|+|.+. ..
T Consensus 14 v~l~~-TRvIy~~~~k~---~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~---~~- 85 (218)
T 4ay0_A 14 VTIGE-SRIIYPLDAAG---VMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA---GG- 85 (218)
T ss_dssp EEESC-CEEEEETTCSC---EEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEEC---SC-
T ss_pred EEECc-eEEEECCCCcE---EEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEec---CC-
Confidence 66666 36777654443 7899999988875444322 1123499999999999999999999862 21
Q ss_pred CCCCCCCCCCCeEEEEEEEeCC
Q 030354 148 NEKPMYQKSRDKFKIISMKVKA 169 (179)
Q Consensus 148 ~e~p~~~k~kDKFlVqs~~v~~ 169 (179)
.-|.+. ---|-+....++.
T Consensus 86 -~LP~DR--ESlf~lnv~eIPp 104 (218)
T 4ay0_A 86 -VFPRDK--ESLKWLCVKGIPP 104 (218)
T ss_dssp -CCCSSS--CEEEEEEEEEECC
T ss_pred -CCCcCc--EEEEEEEEEecCC
Confidence 122221 2236666666664
No 23
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=78.23 E-value=3.4 Score=34.57 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeE-EEEeccCCCceeEecCC----e-eEeCCCCeEEEEEEee
Q 030354 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPP----G-AILAPGESLIATVFKF 141 (179)
Q Consensus 72 ~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~----~-GiI~Pgesv~I~I~l~ 141 (179)
+.-|+|+= .|... +.++.-.|+++|.+..++ -|.|+-. .+.|-+.|. . .-|.||+++++.|-+.
T Consensus 41 g~GLeI~g----~f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 41 AKGLEISG----TFTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTTEEEEE----EEEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCcEEEEE----EEEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 55666654 34444 566779999999998754 3333332 222333332 1 3499999999999774
No 24
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=77.70 E-value=15 Score=27.08 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=45.7
Q ss_pred ceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEE
Q 030354 91 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 164 (179)
Q Consensus 91 k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--gesv~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs 164 (179)
....-.++.+|.+..+| -|.++.--|+.|.++ |..| .|.| +..+.-.+.+ ..+. ....+=|+.|.+
T Consensus 29 ~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~------~~~lklR~klsY 100 (122)
T 3zy7_A 29 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTF 100 (122)
T ss_dssp CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC------CCCEEEEEEEEE
Confidence 34567788899997665 788998888887655 7777 7999 6655544443 1332 234567777776
Q ss_pred EE
Q 030354 165 MK 166 (179)
Q Consensus 165 ~~ 166 (179)
..
T Consensus 101 ~~ 102 (122)
T 3zy7_A 101 NW 102 (122)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 25
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=77.06 E-value=21 Score=29.19 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=43.4
Q ss_pred EEEcCCCceEeecCCCceEEEEEEEEcCCCC-eEEEE--eccC----CCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFK--FQTT----APKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 75 L~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~-~VAFK--VKTT----aP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
|.|+. .-+.|+..... ..|+|+|..+. ++.-- |..- ...-|.|-|+.--|+||+...|+|.+
T Consensus 2 ~~l~~-TRvIy~~~~k~---~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 70 (224)
T 3gfu_C 2 LAVDQ-TRYIFRGDKDA---LTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIM 70 (224)
T ss_dssp EECSC-SEEEEETTSSC---EEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEE
T ss_pred ccccc-eEEEEeCCCce---EEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEE
Confidence 45566 36777755444 79999999875 43222 2211 12249999999999999999999986
No 26
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=74.73 E-value=11 Score=27.15 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=41.7
Q ss_pred ceEeecCCCc-eEEEEEEEEcCCCCeEEEEeccCCCceeEe-cCCeeEeCCCCeEEEEEEe
Q 030354 82 KLYFPYEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFK 140 (179)
Q Consensus 82 eL~F~~~~~k-~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V-rP~~GiI~Pgesv~I~I~l 140 (179)
.|+-....|. +-..+|+|.|.+..+..|.|+......+.+ .|..=.|+||+...+.|++
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEE
Confidence 4554444553 335999999999998999988776444554 4555588999988887776
No 27
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=64.77 E-value=18 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=39.4
Q ss_pred CCCceEEEEEEEEcCCCCe-EEEEeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 88 EAGKQVRSAIKIKNTSKSH-VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 88 ~~~k~~~s~LtL~N~s~~~-VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
..|+.++-.++++|..... =+|+|+-...+...-.-..+ |.+|++..|.+..
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 4688999999999999754 48888866555543332333 9999999999986
No 28
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=58.02 E-value=53 Score=24.12 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=45.1
Q ss_pred CceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCCC--CeEEEEEEeeccCCCCCCCCCCCCCCCeEEEE
Q 030354 90 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPG--ESLIATVFKFVELPENNEKPMYQKSRDKFKII 163 (179)
Q Consensus 90 ~k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg--esv~I~I~l~~~~p~~~e~p~~~k~kDKFlVq 163 (179)
.....-.++..|.+..+| -|.++.--|+.|.++ |..| .|.|+ ..+.-.+.+ ..+.+ +.....+=|+.|.
T Consensus 30 ~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I--~n~~~---~~~~~lklR~kls 104 (123)
T 3mnm_A 30 NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI--ENAPA---NPSKALXVKWKVN 104 (123)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE--ESCCC---C---CCEEEEEEE
T ss_pred CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE--ecCCC---CCCCCEEEEEEEE
Confidence 345667888899987766 799999899888655 7777 79998 444433332 13321 1123456677776
Q ss_pred EEE
Q 030354 164 SMK 166 (179)
Q Consensus 164 s~~ 166 (179)
+..
T Consensus 105 Y~~ 107 (123)
T 3mnm_A 105 YSV 107 (123)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 29
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=57.43 E-value=16 Score=26.45 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCeEEEEeccCCC
Q 030354 95 SAIKIKNTSKSHVAFKFQTTAP 116 (179)
Q Consensus 95 s~LtL~N~s~~~VAFKVKTTaP 116 (179)
-.|+++. ....+.|||+.+.+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~ 52 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTP 52 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSC
T ss_pred EEEEEec-CCcEEEEEeCCCCH
Confidence 5688888 78899999998776
No 30
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=56.38 E-value=57 Score=24.19 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCceEEEEEEEEcCCCCeEEEEeccCCCceeEecC-------------------CeeEeCCCCeEEEEEEe
Q 030354 89 AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRP-------------------PGAILAPGESLIATVFK 140 (179)
Q Consensus 89 ~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP-------------------~~GiI~Pgesv~I~I~l 140 (179)
.|+.+.-.|+|+|.++..+-+-+.+-.--.|.|+= ..=.|+||++....+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w 86 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVW 86 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEe
Confidence 55677888999999888777665544332333332 12368999999999986
No 31
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=50.87 E-value=41 Score=28.13 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=35.2
Q ss_pred CceEEEEEEEEcCCCCeEE-EEeccCCCc----ee--EecCCeeEeCCCCeEEEEEEe
Q 030354 90 GKQVRSAIKIKNTSKSHVA-FKFQTTAPK----SC--FMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 90 ~k~~~s~LtL~N~s~~~VA-FKVKTTaP~----~Y--~VrP~~GiI~Pgesv~I~I~l 140 (179)
+...+-.|.+.|.+..++. |++.-..++ .+ .++|.-..|.|++.+...|..
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v 124 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNI 124 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEE
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEE
Confidence 4567789999999987663 666443433 34 446666899999987666543
No 32
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=46.91 E-value=24 Score=26.21 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=27.0
Q ss_pred EEEEEcCCCCeEE---EEeccCCCc---eeEecCCeeEeCCCCeEEEEE
Q 030354 96 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 96 ~LtL~N~s~~~VA---FKVKTTaP~---~Y~VrP~~GiI~Pgesv~I~I 138 (179)
.|+|.|.+++.+. |+++-...+ .|+. |+.=+|+||+++.|.=
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVwa 73 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIWA 73 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEEE
Confidence 5778888766553 666643322 3544 5555899999987653
No 33
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=44.63 E-value=63 Score=24.65 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=25.2
Q ss_pred EEEEEcCCCCeE---EEEeccCCC---ceeEecCCeeEeCCCCeEEEEE
Q 030354 96 AIKIKNTSKSHV---AFKFQTTAP---KSCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 96 ~LtL~N~s~~~V---AFKVKTTaP---~~Y~VrP~~GiI~Pgesv~I~I 138 (179)
.|+|.|.+.+.+ -|+|+=... ..|+ =|+.=+|+||+++.|.-
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtVwa 86 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTIWA 86 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEEEE
Confidence 577888876655 355543222 1243 35555899999977653
No 34
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=43.00 E-value=30 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=25.2
Q ss_pred EEEEEcCCCCeE---EEEeccCCC----ceeEecCCeeEeCCCCeEEEEE
Q 030354 96 AIKIKNTSKSHV---AFKFQTTAP----KSCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 96 ~LtL~N~s~~~V---AFKVKTTaP----~~Y~VrP~~GiI~Pgesv~I~I 138 (179)
.|+|.|.+++.+ -|+|+=... ..|+ =|+.=+|+||+++.|.-
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~-Fp~~~~L~pg~~VtIws 83 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYK-FTPKYILRAGQMVTVWA 83 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEE-CCTTCEECTTCEEEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEE-ECCCcEECCCCEEEEEe
Confidence 467777776544 355664322 2233 35566899999876543
No 35
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=42.97 E-value=14 Score=32.93 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=31.0
Q ss_pred CCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEeccCCCceeEe
Q 030354 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM 121 (179)
Q Consensus 71 ~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~V 121 (179)
+.+.+.|.|..|++|..+++. .++|+..+..-+.|=+.=-....|.+
T Consensus 37 ~~~~~~l~~~~e~R~ev~~~~----~~~i~l~~g~~~i~G~~L~~~~~~t~ 83 (460)
T 2npi_A 37 EWHKLVIPKGSDWQIDLKAEG----KLIVKVNSGIVEIFGTELAVDDEYTF 83 (460)
T ss_dssp SCEEEECCTTEECCEECCTTC----EEEEEEEESCEEETTEECCBTSEEEE
T ss_pred CcEEEEeCCCcEEEEEECCCC----eEEEEEeeeEEEEEEEEecCCCeEEE
Confidence 457799999999999988775 44555555544444444444556666
No 36
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=42.42 E-value=28 Score=25.52 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=34.7
Q ss_pred eeecCCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc
Q 030354 65 ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113 (179)
Q Consensus 65 ~~~~~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT 113 (179)
..--+|..-.|++.|..-=....-.+..++..|+|.|+...++.-|+|-
T Consensus 50 fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kl 98 (122)
T 3zy7_A 50 FQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 98 (122)
T ss_dssp EEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEE
T ss_pred EEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEE
Confidence 4445788888999997533333333677999999999987666555554
No 37
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=40.81 E-value=87 Score=26.84 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCc
Q 030354 95 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171 (179)
Q Consensus 95 s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs~~v~~~~ 171 (179)
-.|.|+|.++- -|.++-+++..|.+.++.=-|+|+++..+.|-. .. . .....-+|-|.-+.+.+++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~~~~~~~~~~~~~~~~~~~ 335 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGF----KQ--G---IKGGDVNFEVTNFIVAPDK 335 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEE----CT--T---CCCCEEEEEEEEEEEETTE
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEec----cc--c---ccceEEEEEeeeeeecCCC
Confidence 57889998876 567778899999999999999999999999976 11 1 1234667888777666554
No 38
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=36.60 E-value=1.1e+02 Score=21.63 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCceEEEEEEEEcCCCC---eEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEe
Q 030354 89 AGKQVRSAIKIKNTSKS---HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 89 ~~k~~~s~LtL~N~s~~---~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
-|+.+...++++|+-.. ...|-|--..-.+=.... .|-|.||+++.+++.+
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEEE
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEEE
Confidence 48889999999999875 568887755442221111 3679999999999998
No 39
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=36.31 E-value=77 Score=22.83 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCceEEEEEEEEcCCCCeEEEEeccCCCceeEecCC------eeEeCCCCeEEEEEE
Q 030354 89 AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP------GAILAPGESLIATVF 139 (179)
Q Consensus 89 ~~k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~------~GiI~Pgesv~I~I~ 139 (179)
.+......++++|.++..+.|||.==+.+-+.|.+. .=+|.+++++.|.-.
T Consensus 34 ~nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~v 90 (107)
T 4gio_A 34 SNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKL 90 (107)
T ss_dssp TTSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEE
Confidence 444566889999999999999998778888888653 246889999888776
No 40
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=35.55 E-value=68 Score=23.24 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=40.5
Q ss_pred CCCceEEEEEEEEcCCCCe--EEEEeccCCCceeEecCC----ee-EeCCCCeEEEEEE
Q 030354 88 EAGKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP----GA-ILAPGESLIATVF 139 (179)
Q Consensus 88 ~~~k~~~s~LtL~N~s~~~--VAFKVKTTaP~~Y~VrP~----~G-iI~Pgesv~I~I~ 139 (179)
..+...+..+.|+|.+..+ |.||+-==+.+-+.|.|. .- +|.+++++.|.-.
T Consensus 35 ~~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~v 93 (112)
T 3o0l_A 35 AEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTAL 93 (112)
T ss_dssp CGGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEE
T ss_pred ecCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEE
Confidence 3566677999999999875 899987777777888765 22 5888998888776
No 41
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=31.84 E-value=1.6e+02 Score=22.06 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=42.8
Q ss_pred ceEEEEEEEEcCCCCeE-EEEeccCCCceeEec--CCee-EeCCCC--eEEEEEEeeccCCCCCCCCCCCCCCCeEEEEE
Q 030354 91 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGE--SLIATVFKFVELPENNEKPMYQKSRDKFKIIS 164 (179)
Q Consensus 91 k~~~s~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pge--sv~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs 164 (179)
+...-.++..|.+..+| -|.++.--|+.|.++ |..| .|.|+. .+.-.+.+ ..+. ..+.+=|+.|.+
T Consensus 53 ~~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I--~n~~------~~~lklR~klsY 124 (146)
T 1iu1_A 53 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTY 124 (146)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEE--ECTT------CCCCCCEEEEEE
T ss_pred CEEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEE--eCCC------CCCEEEEEEEEE
Confidence 34556788999887655 788888888888665 6666 688844 23333322 1332 134677777776
Q ss_pred EE
Q 030354 165 MK 166 (179)
Q Consensus 165 ~~ 166 (179)
..
T Consensus 125 ~~ 126 (146)
T 1iu1_A 125 NH 126 (146)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 42
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=31.37 E-value=48 Score=21.51 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEEcCCCCeEEEEeccCCC
Q 030354 96 AIKIKNTSKSHVAFKFQTTAP 116 (179)
Q Consensus 96 ~LtL~N~s~~~VAFKVKTTaP 116 (179)
.|+++......+.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 678888888899999998877
No 43
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=30.89 E-value=55 Score=24.63 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=31.6
Q ss_pred eeecCCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc
Q 030354 65 ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113 (179)
Q Consensus 65 ~~~~~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT 113 (179)
..--+|..-.|.+.|..-=....-.+..++..|+|.|....++.-|+|-
T Consensus 68 fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~~l~LR~kl 116 (140)
T 1gyu_A 68 FQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 116 (140)
T ss_dssp EEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCEEEEE
T ss_pred EEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 3445777888888885333332222345789999999877666655554
No 44
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=29.86 E-value=1.9e+02 Score=22.25 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCeEEEEeccCCCceeEecCCeeEeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCcc
Q 030354 95 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVD 172 (179)
Q Consensus 95 s~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pgesv~I~I~l~~~~p~~~e~p~~~k~kDKFlVqs~~v~~~~d 172 (179)
-.+-|-|.|+..+.|-.-+-..+.+++| ..|+|+|+.++.|.=+- .. +...-.+|.||-+.-..+.-
T Consensus 30 fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~---~~-------eln~~~~~~vQ~layK~~k~ 96 (147)
T 2huh_A 30 FEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFT---KD-------VLNEMERVAVQLIAFKDGKP 96 (147)
T ss_dssp EEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEEC---GG-------GGGGCSSEEEEEEEECSSSC
T ss_pred eEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeC---hh-------HhcCCceEEEEEEEEcCCCc
Confidence 5678899999999999888888888777 68999999999886653 11 12346788888888777553
No 45
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=29.42 E-value=1.9e+02 Score=26.42 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=38.9
Q ss_pred ceEEEEEEEEcCCCCeEEEEeccCCCcee--EecCCeeEe-CCCCeEEEEEEe
Q 030354 91 KQVRSAIKIKNTSKSHVAFKFQTTAPKSC--FMRPPGAIL-APGESLIATVFK 140 (179)
Q Consensus 91 k~~~s~LtL~N~s~~~VAFKVKTTaP~~Y--~VrP~~GiI-~Pgesv~I~I~l 140 (179)
..++-+-+++|.....-.||++.+.|.-. .|.|..=.+ +.||+..++|++
T Consensus 537 ~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 537 FNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred eEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 34455668999999999999998888644 667887655 568998888886
No 46
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=27.73 E-value=1e+02 Score=22.39 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=8.1
Q ss_pred CCCCeEEEEEE
Q 030354 129 APGESLIATVF 139 (179)
Q Consensus 129 ~Pgesv~I~I~ 139 (179)
..|+...|.|-
T Consensus 94 k~Ge~~~v~ip 104 (133)
T 2y78_A 94 KVGGVRRLTIP 104 (133)
T ss_dssp BTTCEEEEEEC
T ss_pred CCCCEEEEEEC
Confidence 46888887775
No 47
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=25.27 E-value=66 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCeEEEEeccCCC
Q 030354 95 SAIKIKNTSKSHVAFKFQTTAP 116 (179)
Q Consensus 95 s~LtL~N~s~~~VAFKVKTTaP 116 (179)
-.|+++......|.|||+.+.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 5788888888899999998877
No 48
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.16 E-value=47 Score=24.54 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=33.2
Q ss_pred eeecCCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc
Q 030354 65 ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113 (179)
Q Consensus 65 ~~~~~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT 113 (179)
..--+|..-.|.+.|..-=....-.+..++..|+|.|....++.-|+|-
T Consensus 59 fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~~~~~l~lR~kl 107 (131)
T 2e9g_A 59 CQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNPNKAPLRLKLRL 107 (131)
T ss_dssp EEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECTTCCCCCEEEEE
T ss_pred EEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 3445788888999995443333322345789999999987766666664
No 49
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.07 E-value=78 Score=22.58 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.6
Q ss_pred EEEcCC
Q 030354 75 LKLDPA 80 (179)
Q Consensus 75 L~I~P~ 80 (179)
|.|+|.
T Consensus 43 lev~p~ 48 (100)
T 1uh6_A 43 VKCNTD 48 (100)
T ss_dssp EEEETT
T ss_pred EEeCCC
Confidence 444443
No 50
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=23.92 E-value=1.3e+02 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=32.5
Q ss_pred CceEeecCCCceEEEEEEEEcCCCCeEEEE-eccCCCceeEecCCeeEeCCCCeEEEEE
Q 030354 81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 81 ~eL~F~~~~~k~~~s~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pgesv~I~I 138 (179)
..|.|... |+ .|+++|++..+|.|- ++. ..+.+ . .+.|.|+++..+.+
T Consensus 129 ~~L~~~~~-~~----~l~v~Nptpy~vtl~~l~~-~g~~~--~--~~mv~P~s~~~~~l 177 (205)
T 1klf_A 129 EKLRFRRS-AN----SLTLINPTPYYLTVTELNA-GTRVL--E--NALVPPMGESTVKL 177 (205)
T ss_dssp GGCEECCC-SS----EEEEEECSSSCEEEEEEES-SSSBC--C--CEEECTTEEEEEEC
T ss_pred heeEEEEc-CC----EEEEECCCCCEEEEEEEEe-CCccc--c--cceEcCCCcceeec
Confidence 36777753 22 499999999998875 333 32322 2 37999999987654
No 51
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=23.61 E-value=82 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=32.3
Q ss_pred ceEeecCCCceEEEEEEEEcCCCCeEEEE-eccCCCceeEecCCeeEeCCCCeEEEEE
Q 030354 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 82 eL~F~~~~~k~~~s~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pgesv~I~I 138 (179)
.|.|....+ .|+++|++..+|.|- ++. +.+ .+. .+.|.|+++..+.+
T Consensus 140 ~L~~~~~g~-----~l~v~NptPyyvtl~~l~~-~g~--~i~--~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 140 NLSWKVDGG-----KLIAENPSPFYMNIGELTF-GGK--SIP--SHYIPPKSTWAFDL 187 (218)
T ss_dssp GCEEEEETT-----EEEEEECSSSCEEEEEEEE-TTE--ECC--CCEECTTEEEEEEC
T ss_pred ceEEEEeCC-----EEEEECCCCCEEEEEEEEE-CCE--Ecc--CcEECCCCeeEEEC
Confidence 577776533 489999999999874 332 222 232 47999999887655
No 52
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=23.56 E-value=71 Score=24.13 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=34.0
Q ss_pred ccce-eeecCCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEEEecc
Q 030354 61 VSSV-ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113 (179)
Q Consensus 61 ~~~~-~~~~~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAFKVKT 113 (179)
++.+ ..--+|..-.|++.|..-=....-.+..++..++|.|....++.-|+|-
T Consensus 69 it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~~~lklR~kl 122 (146)
T 1iu1_A 69 MTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQQLRMRIKL 122 (146)
T ss_dssp BEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCCEEEE
T ss_pred cccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 4443 4445888889999995333333222345889999999876655555553
No 53
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=23.35 E-value=1.3e+02 Score=21.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=31.4
Q ss_pred eeecCCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCC---CCeEEEEecc
Q 030354 65 ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTS---KSHVAFKFQT 113 (179)
Q Consensus 65 ~~~~~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s---~~~VAFKVKT 113 (179)
..--+|..--|.+.|..-=....-....++..|+|.|+. ..++.-|+|-
T Consensus 52 fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~~~~~~~lklR~kl 103 (123)
T 3mnm_A 52 FLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPSKALXVKWKV 103 (123)
T ss_dssp EEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEEESCCCC---CCEEEEEE
T ss_pred EEEecCcccEEEeECCCcCccCCCCCCCEEEEEEEecCCCCCCCCEEEEEEE
Confidence 344578888899999743333322236789999999876 4566555554
No 54
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=22.48 E-value=1e+02 Score=28.16 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=26.7
Q ss_pred CCCCCcEEEcCCCceEeecCCCceEEEEEEEEcCCCCeEEE
Q 030354 69 LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF 109 (179)
Q Consensus 69 ~p~~~lL~I~P~~eL~F~~~~~k~~~s~LtL~N~s~~~VAF 109 (179)
.|.+--+.|+|. .|.|... ++..+-+|+++........|
T Consensus 561 ~p~gv~v~V~P~-~l~f~~~-~~~~~~~vt~~~~~~~~~~~ 599 (621)
T 3vta_A 561 APQGLTISVNPN-VLSFNGL-GDRKSFTLTVRGSIKGFVVS 599 (621)
T ss_dssp CCSSEEEEEESS-EEEECST-TCEEEEEEEEEECCCSSEEE
T ss_pred CCCCcEEEEecC-EEEEcCC-CcEEEEEEEEEecCCCceEE
Confidence 466778999995 9999844 55566777777655444433
No 55
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=21.71 E-value=1e+02 Score=24.95 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred EEEEEcCCCCeEEEEeccCCCceeEecCCee-EeCCCCeEEEEE
Q 030354 96 AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGA-ILAPGESLIATV 138 (179)
Q Consensus 96 ~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~G-iI~Pgesv~I~I 138 (179)
+|+|+|.....|---+.+-++. -|..| .|.||++..|.|
T Consensus 2 tfti~N~C~~tVWp~~~~g~~~----l~~gG~~L~~G~s~~~~v 41 (206)
T 2vhk_A 2 TFEIVNRCSYTVWAAASKGDAA----LDAGGRQLNSGESWTINV 41 (206)
T ss_dssp EEEEEECSSSCEEEEEECSSSE----EEEEEEEECTTCEEEEEC
T ss_pred EEEEEeCCCCCcCCEEcCCCCc----CCCCCeecCCCCEEEEEC
Confidence 6899999999887767653322 24455 799999988876
No 56
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.09 E-value=90 Score=21.58 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCeEEEEeccCCC
Q 030354 95 SAIKIKNTSKSHVAFKFQTTAP 116 (179)
Q Consensus 95 s~LtL~N~s~~~VAFKVKTTaP 116 (179)
-.|+++..+.+.|.|||+.+.+
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCH
Confidence 5788888888899999998876
No 57
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=21.02 E-value=1e+02 Score=22.69 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=25.2
Q ss_pred EEEEEcCCCCeE---EEEeccC-C--C-ceeEecCCeeEeCCCCeEEEEE
Q 030354 96 AIKIKNTSKSHV---AFKFQTT-A--P-KSCFMRPPGAILAPGESLIATV 138 (179)
Q Consensus 96 ~LtL~N~s~~~V---AFKVKTT-a--P-~~Y~VrP~~GiI~Pgesv~I~I 138 (179)
.|+|.|.+.+.+ -|+|+-. . . ..|. =|+.=+|+||+++.|.-
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~-Fp~~~~L~pg~~vtIws 68 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYR-FPPKFTLKAGQVVTIWA 68 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEE-CCSSCEECTTCEEEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEE-eCCCcEECCCCEEEEEe
Confidence 467777776544 3555543 1 1 2333 35666899999876543
No 58
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=20.67 E-value=2.6e+02 Score=22.58 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=38.0
Q ss_pred CceEEEEEEEEcCCCCeEE-EEeccCCCc------eeEecCCeeEeCCCCeEEEEEEe
Q 030354 90 GKQVRSAIKIKNTSKSHVA-FKFQTTAPK------SCFMRPPGAILAPGESLIATVFK 140 (179)
Q Consensus 90 ~k~~~s~LtL~N~s~~~VA-FKVKTTaP~------~Y~VrP~~GiI~Pgesv~I~I~l 140 (179)
+...+-.|.+.|.+..++. |++..-.+. ....+|.-..|.||+.+...|..
T Consensus 41 ~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v 98 (247)
T 1kyf_A 41 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNI 98 (247)
T ss_dssp TTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEE
T ss_pred CCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEE
Confidence 4466789999999987664 888665543 33446777899999998887765
No 59
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=20.55 E-value=2.1e+02 Score=20.92 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=35.4
Q ss_pred EEEEEEEEcCCCC-----eEEEEeccCCCceeEecC-----CeeEeCCCCeEEEEEE
Q 030354 93 VRSAIKIKNTSKS-----HVAFKFQTTAPKSCFMRP-----PGAILAPGESLIATVF 139 (179)
Q Consensus 93 ~~s~LtL~N~s~~-----~VAFKVKTTaP~~Y~VrP-----~~GiI~Pgesv~I~I~ 139 (179)
.+-.|.|-|.+++ .++||.-.-..+.|..+- ..|.|+||+++.=.+.
T Consensus 29 ktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~~vkG~av 85 (106)
T 3nrf_A 29 QAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAI 85 (106)
T ss_dssp EEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTCEEEEEEE
T ss_pred EEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCCceeeEEE
Confidence 3467889999875 568888887777776653 3599999999885444
No 60
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=20.25 E-value=18 Score=21.35 Aligned_cols=7 Identities=57% Similarity=1.037 Sum_probs=5.4
Q ss_pred ccccccC
Q 030354 19 KLPFRQS 25 (179)
Q Consensus 19 ~~~~~~~ 25 (179)
+||||+.
T Consensus 11 ~~pfw~k 17 (32)
T 1yfn_E 11 KMPFWQK 17 (32)
T ss_pred hChHHHH
Confidence 5699985
Done!