BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030355
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3BDI7|DSG1_PIG Desmoglein-1 OS=Sus scrofa GN=DSG1 PE=2 SV=1
          Length = 1045

 Score = 35.0 bits (79), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 78  LQSQSHVGVIYSAEVNNTAQDEFVETQYYNQLVSIDKDHHTTGTGFIRVANEGNGYNIRV 137
           L   S  G+I         Q   +  +Y   ++SID     T TG I +  EG+G+  R 
Sbjct: 433 LAIDSKTGIITLRNKVTREQYNLLGKKYQGTILSIDDALQRTCTGTINIDLEGSGWEDRQ 492

Query: 138 GKGCDSGDRPVYKSNPATNDWIPSVEY 164
             G  +G   +     +TND+ PS EY
Sbjct: 493 TDGAVTGGGTI----TSTNDFTPSYEY 515


>sp|B2JDY9|SYI_BURP8 Isoleucine--tRNA ligase OS=Burkholderia phymatum (strain DSM 17167
           / STM815) GN=ileS PE=3 SV=1
          Length = 945

 Score = 31.6 bits (70), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANQVRAQIDS 39
           +D+WT+ +  RSD V  A+E+ R+ANQ+ + + +
Sbjct: 823 LDKWTLLRAVRSD-VTKALEEARVANQIGSSLQA 855


>sp|Q7NAT4|HMW1_MYCGA Cytadherence high molecular weight protein 1 OS=Mycoplasma
            gallisepticum (strain R(low / passage 15 / clone 2))
            GN=hlp1 PE=3 SV=2
          Length = 1969

 Score = 30.4 bits (67), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 19   EVLDAVEQVRIANQVRAQIDSMAPKRPTKPNRSEPDFIAPTNDQSAANGNIPELDKLRSL 78
            +V+  +EQV++ NQ R+ +D + PK   KP+  + D I P       N ++  +++L+  
Sbjct: 1307 DVIKPLEQVQL-NQSRSLLDDLTPKFEVKPSLIKDDVIQP-----KYNDDLEPIEQLQFK 1360

Query: 79   QSQS 82
            Q +S
Sbjct: 1361 QERS 1364


>sp|B5YIF8|DNLJ_THEYD DNA ligase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
           DSM 11347 / YP87) GN=ligA PE=3 SV=1
          Length = 670

 Score = 30.0 bits (66), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 14  PSRSDEVLDAVEQVRIANQVRAQIDSMAPKRPTKPNRSEPDFIAPTNDQSAANGNIPELD 73
           P R + V    E++ I  +V   ID        +  + EP F  P N   AA+G++ +LD
Sbjct: 159 PLRIEGVDKIPEEIDIRGEVYLNIDEFERINKERIEKGEPVFANPRN---AASGSVRQLD 215

Query: 74  KLRSLQSQSHV---GVIYSAEVNNTAQDEFVE 102
              +   + ++   G+ Y   +   +Q EF+E
Sbjct: 216 PSITASRRLYMSCYGIGYVKGIEFKSQIEFIE 247


>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
           GN=NSUN2 PE=2 SV=1
          Length = 796

 Score = 30.0 bits (66), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 13  KPSRSDEVLDAVEQVRIA-NQVRAQIDSMAPKRPTKPNRSEPDFIAPTNDQSAANGN 68
           +P++++E +D  ++ R A  ++ A+ID  +P+ P + +  E +  +  +DQ + N N
Sbjct: 723 RPAQTEEGMDVEDKERDAVTKMEAEIDEESPRSPVESSAMEIENKSEDSDQCSKNTN 779


>sp|Q1WVE0|Y162_LACS1 UPF0210 protein LSL_0162 OS=Lactobacillus salivarius (strain
           UCC118) GN=LSL_0162 PE=3 SV=1
          Length = 447

 Score = 30.0 bits (66), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 105 YYNQLVSIDKDHHTTGTGFIRVANEGNGYNIRVGKGCDSGDRPVYKSNP 153
           Y     ++DK   T G  FI       GY+  V KG  +GDR + KS P
Sbjct: 92  YVKYAKALDKAAQTLGIDFI------GGYSALVQKGYQNGDRTLIKSLP 134


>sp|Q09847|NU146_SCHPO Nucleoporin nup146 OS=Schizosaccharomyces pombe (strain 972 / ATCC
           24843) GN=nup146 PE=1 SV=1
          Length = 1325

 Score = 29.6 bits (65), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 43  KRPTKPNRSEPDFIAPTNDQSAANGNIPE----LDKLRSLQSQSHVGVIYSAEVNNTAQD 98
           K+P     ++P   AP+ D+S    NIP     LD+ ++ ++    G+   +E +N   +
Sbjct: 729 KKPENNVLTKPFSFAPS-DKSMFAANIPSAGEGLDQQKTSKALPSTGITKLSENDNEKAE 787

Query: 99  EFVETQYYNQLVSIDKDHHTTGTGFIRVAN 128
           E  ET+ +N  ++   D  +   G   VAN
Sbjct: 788 ESNETKGFNTTIAKQNDKSSKSEGKASVAN 817


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,086,117
Number of Sequences: 539616
Number of extensions: 2931746
Number of successful extensions: 5103
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5095
Number of HSP's gapped (non-prelim): 22
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)