Query 030356
Match_columns 179
No_of_seqs 201 out of 1377
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 12:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.9 2.6E-23 5.7E-28 159.8 16.7 153 22-174 4-157 (412)
2 TIGR01299 synapt_SV2 synaptic 99.9 1.4E-22 2.9E-27 164.0 17.9 160 16-175 157-317 (742)
3 PRK09556 uhpT sugar phosphate 99.9 4.6E-23 1E-27 160.7 11.4 157 19-175 22-184 (467)
4 COG2814 AraJ Arabinose efflux 99.9 4.1E-22 8.8E-27 149.4 15.5 156 22-177 9-165 (394)
5 TIGR00891 2A0112 putative sial 99.9 7.3E-22 1.6E-26 150.6 17.0 157 21-177 7-164 (405)
6 PRK11663 regulatory protein Uh 99.9 2.6E-21 5.7E-26 149.6 18.5 156 22-177 19-175 (434)
7 PRK03545 putative arabinose tr 99.9 1.5E-21 3.2E-26 149.0 16.3 153 25-177 8-161 (390)
8 PRK10213 nepI ribonucleoside t 99.9 2.5E-21 5.4E-26 148.1 17.5 154 24-177 18-172 (394)
9 COG2271 UhpC Sugar phosphate p 99.9 4E-22 8.7E-27 148.6 12.2 157 20-176 23-182 (448)
10 PRK12307 putative sialic acid 99.9 4.1E-21 8.9E-26 147.9 18.2 156 22-177 14-170 (426)
11 PRK14995 methyl viologen resis 99.9 2.2E-21 4.7E-26 152.3 16.7 154 24-177 4-159 (495)
12 PRK11551 putative 3-hydroxyphe 99.9 9.5E-21 2.1E-25 145.1 17.5 156 21-176 10-166 (406)
13 PRK03699 putative transporter; 99.9 1.1E-20 2.4E-25 144.5 16.8 154 23-176 4-158 (394)
14 TIGR00895 2A0115 benzoate tran 99.9 2E-20 4.4E-25 142.1 17.8 158 20-177 11-169 (398)
15 PRK03893 putative sialic acid 99.9 2.4E-20 5.2E-25 146.3 18.0 156 22-177 16-172 (496)
16 KOG1330 Sugar transporter/spin 99.9 2.3E-22 4.9E-27 151.3 6.0 158 22-179 29-187 (493)
17 PRK10133 L-fucose transporter; 99.9 1.8E-20 4E-25 145.0 16.8 152 22-173 22-177 (438)
18 PRK10406 alpha-ketoglutarate t 99.9 2.2E-20 4.7E-25 144.4 17.2 152 22-173 18-184 (432)
19 TIGR00711 efflux_EmrB drug res 99.9 1.6E-20 3.5E-25 146.7 14.4 151 27-177 3-154 (485)
20 TIGR00903 2A0129 major facilit 99.9 2.2E-20 4.7E-25 141.6 14.3 140 38-177 3-142 (368)
21 PLN00028 nitrate transmembrane 99.9 5.6E-20 1.2E-24 143.7 17.0 154 19-172 29-182 (476)
22 PRK10504 putative transporter; 99.9 5.4E-20 1.2E-24 143.5 16.9 151 27-177 11-162 (471)
23 TIGR00710 efflux_Bcr_CflA drug 99.9 5.2E-20 1.1E-24 139.7 16.3 144 34-177 13-157 (385)
24 PRK09705 cynX putative cyanate 99.9 2.2E-20 4.9E-25 142.8 14.3 136 43-179 26-162 (393)
25 TIGR00806 rfc RFC reduced fola 99.9 5.2E-20 1.1E-24 140.7 15.5 133 41-173 41-174 (511)
26 PRK11273 glpT sn-glycerol-3-ph 99.8 7.7E-20 1.7E-24 142.1 16.9 148 21-169 24-177 (452)
27 PRK10091 MFS transport protein 99.8 5.7E-20 1.2E-24 140.0 15.6 149 29-177 6-155 (382)
28 PRK03633 putative MFS family t 99.8 7.2E-20 1.6E-24 139.4 16.0 148 28-175 8-156 (381)
29 PRK15034 nitrate/nitrite trans 99.8 2.2E-19 4.9E-24 138.4 18.5 148 22-170 30-184 (462)
30 TIGR00887 2A0109 phosphate:H+ 99.8 1.6E-19 3.4E-24 142.1 17.8 159 15-173 5-175 (502)
31 PF07690 MFS_1: Major Facilita 99.8 8.3E-20 1.8E-24 136.8 14.8 144 33-176 3-148 (352)
32 TIGR00894 2A0114euk Na(+)-depe 99.8 1.4E-19 2.9E-24 141.2 16.5 156 21-176 14-194 (465)
33 PRK15402 multidrug efflux syst 99.8 2.1E-19 4.6E-24 137.8 17.1 156 22-177 9-165 (406)
34 PRK10077 xylE D-xylose transpo 99.8 9.3E-20 2E-24 142.3 15.4 152 22-173 8-180 (479)
35 PRK10642 proline/glycine betai 99.8 2.8E-19 6.1E-24 140.3 17.8 149 25-173 15-178 (490)
36 PRK05122 major facilitator sup 99.8 7.8E-20 1.7E-24 139.8 14.3 148 30-177 19-176 (399)
37 PRK15075 citrate-proton sympor 99.8 2.3E-19 5E-24 138.8 16.6 150 24-173 13-177 (434)
38 PRK15403 multidrug efflux syst 99.8 2.5E-19 5.3E-24 137.9 16.3 147 31-177 21-168 (413)
39 TIGR00893 2A0114 d-galactonate 99.8 4.9E-20 1.1E-24 139.5 12.1 142 36-177 4-146 (399)
40 PRK12382 putative transporter; 99.8 2.3E-19 5.1E-24 136.9 15.6 145 33-177 22-176 (392)
41 PRK11652 emrD multidrug resist 99.8 7.1E-19 1.5E-23 134.4 17.2 153 25-177 7-160 (394)
42 PRK09952 shikimate transporter 99.8 7.3E-19 1.6E-23 136.2 17.3 150 24-174 20-186 (438)
43 TIGR00886 2A0108 nitrite extru 99.8 6E-19 1.3E-23 133.2 16.3 145 30-174 5-151 (366)
44 TIGR00890 2A0111 Oxalate/Forma 99.8 1.2E-19 2.6E-24 136.9 12.3 137 38-175 15-152 (377)
45 TIGR00900 2A0121 H+ Antiporter 99.8 3.6E-19 7.8E-24 133.9 14.6 144 34-177 7-156 (365)
46 TIGR00712 glpT glycerol-3-phos 99.8 4.9E-19 1.1E-23 137.1 15.4 151 23-174 24-179 (438)
47 PRK11195 lysophospholipid tran 99.8 1E-18 2.2E-23 133.7 16.0 139 34-175 11-150 (393)
48 cd06174 MFS The Major Facilita 99.8 1.1E-18 2.4E-23 130.4 15.4 145 32-176 5-150 (352)
49 TIGR00879 SP MFS transporter, 99.8 2E-19 4.4E-24 139.5 11.7 143 27-169 29-183 (481)
50 PRK10473 multidrug efflux syst 99.8 2.1E-18 4.5E-23 131.7 16.8 142 35-176 12-154 (392)
51 TIGR00881 2A0104 phosphoglycer 99.8 1.6E-19 3.5E-24 136.3 10.0 143 34-176 3-147 (379)
52 KOG2615 Permease of the major 99.8 2E-19 4.4E-24 132.6 10.1 122 53-174 60-181 (451)
53 TIGR00892 2A0113 monocarboxyla 99.8 7.5E-19 1.6E-23 136.7 13.6 156 21-177 14-171 (455)
54 TIGR00885 fucP L-fucose:H+ sym 99.8 3.5E-18 7.5E-23 131.4 16.5 147 28-174 5-155 (410)
55 PRK11043 putative transporter; 99.8 4.6E-18 1E-22 130.2 17.1 142 36-177 16-158 (401)
56 PRK10054 putative transporter; 99.8 6.6E-18 1.4E-22 129.3 16.6 140 35-174 16-157 (395)
57 PRK09874 drug efflux system pr 99.8 1E-17 2.2E-22 128.3 17.5 148 30-177 18-170 (408)
58 PRK11102 bicyclomycin/multidru 99.8 3.3E-18 7.1E-23 129.8 13.7 135 43-177 8-143 (377)
59 PRK10207 dipeptide/tripeptide 99.8 7.2E-18 1.6E-22 132.1 14.9 142 36-177 24-171 (489)
60 TIGR00897 2A0118 polyol permea 99.8 1.1E-17 2.4E-22 128.3 14.8 130 48-177 35-170 (402)
61 TIGR00805 oat sodium-independe 99.8 1.3E-18 2.9E-23 139.8 9.8 148 29-176 36-235 (633)
62 PRK11646 multidrug resistance 99.8 2.8E-17 6E-22 126.1 16.3 130 45-174 30-160 (400)
63 TIGR00898 2A0119 cation transp 99.8 6.3E-18 1.4E-22 133.0 12.6 127 47-173 110-240 (505)
64 TIGR00924 yjdL_sub1_fam amino 99.8 2.3E-17 4.9E-22 129.0 15.3 145 33-177 17-169 (475)
65 COG2223 NarK Nitrate/nitrite t 99.8 1.8E-17 3.8E-22 123.9 12.1 153 22-175 10-165 (417)
66 PRK11551 putative 3-hydroxyphe 99.7 1.6E-16 3.4E-21 121.8 15.5 134 44-177 238-372 (406)
67 PTZ00207 hypothetical protein; 99.7 1.8E-16 3.8E-21 125.6 15.9 149 22-173 24-180 (591)
68 TIGR00896 CynX cyanate transpo 99.7 2.7E-17 5.9E-22 124.0 10.8 132 43-176 17-149 (355)
69 TIGR00890 2A0111 Oxalate/Forma 99.7 1.5E-16 3.3E-21 120.0 14.5 130 48-177 227-359 (377)
70 KOG0254 Predicted transporter 99.7 8.6E-17 1.9E-21 127.0 12.9 112 61-172 89-201 (513)
71 PRK10489 enterobactin exporter 99.7 4.1E-17 8.9E-22 125.6 10.2 140 37-176 28-173 (417)
72 PRK09584 tppB putative tripept 99.7 6.6E-16 1.4E-20 121.5 16.6 142 36-177 31-178 (500)
73 TIGR00900 2A0121 H+ Antiporter 99.7 7.5E-16 1.6E-20 115.8 16.2 131 47-177 232-365 (365)
74 TIGR00899 2A0120 sugar efflux 99.7 7.7E-16 1.7E-20 116.6 15.9 143 35-177 6-153 (375)
75 PRK15462 dipeptide/tripeptide 99.7 8.8E-16 1.9E-20 119.7 16.4 141 37-177 20-166 (493)
76 TIGR00902 2A0127 phenyl propri 99.7 9.4E-16 2E-20 116.9 15.7 129 48-177 227-357 (382)
77 TIGR00895 2A0115 benzoate tran 99.7 2.6E-15 5.7E-20 114.1 17.2 138 36-173 260-398 (398)
78 TIGR00891 2A0112 putative sial 99.7 2.5E-15 5.5E-20 114.6 16.6 132 47-178 260-393 (405)
79 PRK15011 sugar efflux transpor 99.7 3.1E-15 6.8E-20 114.4 16.1 127 50-177 241-368 (393)
80 TIGR00883 2A0106 metabolite-pr 99.7 9.9E-16 2.2E-20 116.2 13.0 143 36-178 229-378 (394)
81 PRK08633 2-acyl-glycerophospho 99.7 2.7E-15 5.8E-20 128.2 16.5 131 45-175 29-165 (1146)
82 KOG0255 Synaptic vesicle trans 99.7 8E-16 1.7E-20 121.7 11.5 120 54-174 111-231 (521)
83 KOG2532 Permease of the major 99.7 2.9E-15 6.3E-20 116.2 14.3 126 54-179 66-194 (466)
84 TIGR00896 CynX cyanate transpo 99.7 1.1E-14 2.3E-19 109.9 16.2 135 44-179 215-352 (355)
85 PRK10642 proline/glycine betai 99.7 1.3E-14 2.7E-19 114.1 17.1 133 45-178 269-407 (490)
86 TIGR01299 synapt_SV2 synaptic 99.7 6.5E-15 1.4E-19 119.8 15.8 112 64-175 598-710 (742)
87 cd06174 MFS The Major Facilita 99.7 1.5E-14 3.3E-19 108.0 16.8 135 43-177 192-329 (352)
88 TIGR00899 2A0120 sugar efflux 99.7 1.2E-14 2.6E-19 110.1 16.2 127 50-177 224-351 (375)
89 TIGR00883 2A0106 metabolite-pr 99.7 3.7E-15 7.9E-20 113.1 13.3 137 37-173 4-156 (394)
90 TIGR00889 2A0110 nucleoside tr 99.6 4.1E-15 8.9E-20 114.7 13.4 128 50-177 232-373 (418)
91 PRK03545 putative arabinose tr 99.6 7.2E-14 1.6E-18 106.8 20.0 130 46-177 226-357 (390)
92 TIGR00897 2A0118 polyol permea 99.6 2.3E-14 4.9E-19 110.0 17.1 140 37-177 233-378 (402)
93 KOG3764 Vesicular amine transp 99.6 5.1E-16 1.1E-20 115.4 7.6 122 56-177 101-224 (464)
94 KOG2533 Permease of the major 99.6 1.4E-14 2.9E-19 113.0 15.2 146 30-175 49-196 (495)
95 COG0738 FucP Fucose permease [ 99.6 1.1E-14 2.4E-19 108.7 13.4 150 26-175 13-166 (422)
96 PRK10489 enterobactin exporter 99.6 2.5E-14 5.4E-19 110.2 15.8 130 48-177 245-376 (417)
97 PRK11010 ampG muropeptide tran 99.6 3E-14 6.5E-19 112.0 16.0 140 34-175 20-169 (491)
98 PRK09528 lacY galactoside perm 99.6 1.3E-14 2.8E-19 111.9 13.4 122 56-177 257-380 (420)
99 PRK09556 uhpT sugar phosphate 99.6 3.6E-14 7.9E-19 110.9 16.0 144 31-174 263-411 (467)
100 PRK11902 ampG muropeptide tran 99.6 3.7E-14 7.9E-19 108.9 15.7 141 34-176 7-157 (402)
101 KOG0252 Inorganic phosphate tr 99.6 2E-15 4.4E-20 114.1 8.2 150 21-170 36-201 (538)
102 TIGR00880 2_A_01_02 Multidrug 99.6 3.1E-15 6.8E-20 97.7 8.1 110 68-177 5-115 (141)
103 PF06609 TRI12: Fungal trichot 99.6 2.1E-14 4.5E-19 113.6 14.0 137 38-175 56-192 (599)
104 PRK11128 putative 3-phenylprop 99.6 4.7E-14 1E-18 107.6 15.5 127 50-177 229-357 (382)
105 PRK06814 acylglycerophosphoeth 99.6 3.7E-14 7.9E-19 121.3 16.4 150 28-177 17-172 (1140)
106 PRK03699 putative transporter; 99.6 3.2E-14 6.9E-19 108.9 14.4 141 36-177 215-357 (394)
107 PRK12382 putative transporter; 99.6 4.6E-14 9.9E-19 107.9 15.1 129 47-177 237-366 (392)
108 PRK15011 sugar efflux transpor 99.6 1.2E-13 2.7E-18 105.7 17.2 141 36-177 25-171 (393)
109 PRK09705 cynX putative cyanate 99.6 7.6E-14 1.6E-18 106.9 15.8 136 41-178 220-358 (393)
110 TIGR00893 2A0114 d-galactonate 99.6 4.1E-14 8.9E-19 107.2 14.1 142 35-177 224-375 (399)
111 TIGR00901 2A0125 AmpG-related 99.6 2.8E-14 6E-19 107.7 12.9 133 43-177 5-147 (356)
112 PRK09874 drug efflux system pr 99.6 1.2E-13 2.7E-18 105.8 16.5 115 63-177 260-375 (408)
113 PRK03633 putative MFS family t 99.6 6.5E-14 1.4E-18 106.7 14.8 128 47-177 221-349 (381)
114 PRK09952 shikimate transporter 99.6 2.2E-13 4.8E-18 105.7 17.9 130 47-176 272-407 (438)
115 TIGR00902 2A0127 phenyl propri 99.6 6.9E-14 1.5E-18 106.7 14.0 144 32-177 10-156 (382)
116 PRK12307 putative sialic acid 99.6 3.1E-13 6.7E-18 104.3 17.6 132 46-177 251-385 (426)
117 TIGR00892 2A0113 monocarboxyla 99.6 5.3E-14 1.1E-18 109.7 13.3 132 46-177 261-397 (455)
118 KOG0253 Synaptic vesicle trans 99.6 3.1E-14 6.8E-19 105.3 11.0 164 13-177 65-228 (528)
119 PRK15075 citrate-proton sympor 99.6 1.4E-13 3E-18 106.7 15.3 139 39-177 251-396 (434)
120 KOG2504 Monocarboxylate transp 99.6 1.1E-14 2.3E-19 114.3 7.9 157 20-177 40-198 (509)
121 PRK05122 major facilitator sup 99.6 5E-13 1.1E-17 102.3 16.7 127 49-177 239-366 (399)
122 PRK03893 putative sialic acid 99.6 1.4E-13 3E-18 108.2 13.8 131 47-177 296-430 (496)
123 PF11700 ATG22: Vacuole efflux 99.5 7.6E-13 1.6E-17 103.3 17.4 136 43-178 299-445 (477)
124 PRK11128 putative 3-phenylprop 99.5 2E-13 4.4E-18 104.1 13.5 138 36-177 14-156 (382)
125 PRK10406 alpha-ketoglutarate t 99.5 5.8E-13 1.3E-17 103.2 15.5 128 46-173 264-397 (432)
126 PF05977 MFS_3: Transmembrane 99.5 5.2E-13 1.1E-17 105.3 15.3 131 47-177 239-371 (524)
127 KOG0569 Permease of the major 99.5 5E-13 1.1E-17 103.5 14.5 108 64-171 63-174 (485)
128 TIGR00792 gph sugar (Glycoside 99.5 8.1E-13 1.7E-17 102.2 15.8 131 46-177 242-382 (437)
129 TIGR02332 HpaX 4-hydroxyphenyl 99.5 2E-13 4.4E-18 105.2 12.3 148 32-179 248-399 (412)
130 TIGR00711 efflux_EmrB drug res 99.5 2.1E-13 4.6E-18 106.7 12.5 133 42-174 271-409 (485)
131 PRK10504 putative transporter; 99.5 2.6E-13 5.6E-18 106.1 13.0 140 37-176 272-416 (471)
132 TIGR02718 sider_RhtX_FptX side 99.5 7.7E-13 1.7E-17 101.1 15.2 129 49-177 231-368 (390)
133 TIGR00901 2A0125 AmpG-related 99.5 7.1E-13 1.5E-17 100.0 14.7 116 44-159 227-355 (356)
134 TIGR01301 GPH_sucrose GPH fami 99.5 7.8E-13 1.7E-17 103.0 14.9 137 36-172 14-175 (477)
135 PF00083 Sugar_tr: Sugar (and 99.5 2.5E-16 5.4E-21 122.3 -4.6 140 33-172 7-161 (451)
136 TIGR00882 2A0105 oligosacchari 99.5 9.9E-13 2.1E-17 100.7 15.0 139 35-175 11-159 (396)
137 TIGR00879 SP MFS transporter, 99.5 9.7E-13 2.1E-17 102.2 15.1 135 43-177 301-447 (481)
138 TIGR00881 2A0104 phosphoglycer 99.5 9.4E-13 2E-17 99.4 14.6 128 50-177 241-374 (379)
139 TIGR00882 2A0105 oligosacchari 99.5 1.2E-12 2.7E-17 100.2 15.3 121 57-177 250-372 (396)
140 PRK14995 methyl viologen resis 99.5 9.1E-13 2E-17 103.8 14.8 128 47-174 280-412 (495)
141 PRK10213 nepI ribonucleoside t 99.5 1.1E-11 2.3E-16 95.1 19.9 130 46-177 237-368 (394)
142 PF05977 MFS_3: Transmembrane 99.5 7.9E-13 1.7E-17 104.3 13.9 134 44-177 28-167 (524)
143 COG2814 AraJ Arabinose efflux 99.5 2.3E-12 5E-17 97.3 15.3 138 38-177 224-363 (394)
144 PRK09528 lacY galactoside perm 99.5 1.5E-12 3.3E-17 100.5 14.7 138 36-175 20-167 (420)
145 TIGR01272 gluP glucose/galacto 99.5 2.8E-12 6E-17 95.4 15.4 145 30-177 144-292 (310)
146 PRK10091 MFS transport protein 99.5 9.4E-12 2E-16 95.0 18.5 129 47-177 221-352 (382)
147 PF07690 MFS_1: Major Facilita 99.5 1.1E-12 2.5E-17 98.2 12.9 126 41-166 221-352 (352)
148 PRK15402 multidrug efflux syst 99.5 5.6E-12 1.2E-16 96.8 16.3 128 49-177 238-372 (406)
149 PRK11646 multidrug resistance 99.5 2.1E-12 4.5E-17 99.2 13.4 130 47-176 229-360 (400)
150 COG2270 Permeases of the major 99.5 1.3E-12 2.9E-17 98.2 11.6 151 27-178 255-406 (438)
151 PRK08633 2-acyl-glycerophospho 99.4 5.5E-12 1.2E-16 108.0 16.4 128 46-173 253-382 (1146)
152 PRK11663 regulatory protein Uh 99.4 9.5E-12 2.1E-16 96.5 16.3 136 42-177 259-401 (434)
153 KOG2504 Monocarboxylate transp 99.4 2.6E-12 5.5E-17 101.1 12.5 153 26-178 298-453 (509)
154 PRK09848 glucuronide transport 99.4 6E-12 1.3E-16 98.0 14.5 134 43-176 245-389 (448)
155 TIGR00710 efflux_Bcr_CflA drug 99.4 1.8E-11 3.9E-16 93.0 16.7 121 48-169 228-356 (385)
156 PRK10054 putative transporter; 99.4 5.1E-12 1.1E-16 96.9 13.6 123 54-177 237-361 (395)
157 PRK11273 glpT sn-glycerol-3-ph 99.4 1E-11 2.2E-16 96.8 15.4 133 45-177 272-412 (452)
158 TIGR00887 2A0109 phosphate:H+ 99.4 1.3E-11 2.7E-16 97.5 15.9 133 43-175 305-454 (502)
159 COG3104 PTR2 Dipeptide/tripept 99.4 7E-13 1.5E-17 101.6 8.3 132 46-177 42-183 (498)
160 PF13347 MFS_2: MFS/sugar tran 99.4 3.3E-12 7.2E-17 98.9 11.9 142 35-177 234-386 (428)
161 PF03825 Nuc_H_symport: Nucleo 99.4 9.5E-12 2.1E-16 95.4 14.1 140 38-177 219-366 (400)
162 PRK11010 ampG muropeptide tran 99.4 1.7E-11 3.7E-16 96.6 15.7 132 46-177 243-380 (491)
163 PRK10077 xylE D-xylose transpo 99.4 2.7E-11 5.9E-16 94.9 16.7 129 44-172 289-423 (479)
164 TIGR00889 2A0110 nucleoside tr 99.4 9.4E-12 2E-16 96.2 13.8 131 36-172 12-153 (418)
165 KOG2325 Predicted transporter/ 99.4 5.2E-12 1.1E-16 97.5 12.0 154 22-175 30-191 (488)
166 COG2807 CynX Cyanate permease 99.4 8.6E-12 1.9E-16 92.3 12.6 140 38-179 24-164 (395)
167 TIGR00792 gph sugar (Glycoside 99.4 7.4E-12 1.6E-16 96.9 10.9 129 46-174 20-161 (437)
168 PRK11195 lysophospholipid tran 99.4 9.8E-11 2.1E-15 89.8 16.9 123 50-173 230-354 (393)
169 PF05631 DUF791: Protein of un 99.4 3.8E-11 8.3E-16 89.1 13.7 124 51-175 59-189 (354)
170 COG2223 NarK Nitrate/nitrite t 99.4 5.4E-12 1.2E-16 94.8 9.1 135 43-178 235-378 (417)
171 PRK06814 acylglycerophosphoeth 99.4 2.5E-11 5.5E-16 104.1 14.3 127 48-174 247-395 (1140)
172 PRK10133 L-fucose transporter; 99.3 3.3E-11 7.1E-16 93.7 13.6 128 47-177 280-409 (438)
173 PRK15034 nitrate/nitrite trans 99.3 1.1E-10 2.4E-15 90.6 16.2 135 43-178 269-431 (462)
174 TIGR00898 2A0119 cation transp 99.3 3.3E-11 7.2E-16 95.0 13.3 117 51-170 348-467 (505)
175 PRK10429 melibiose:sodium symp 99.3 9.1E-11 2E-15 92.0 15.6 137 41-177 246-395 (473)
176 PRK11102 bicyclomycin/multidru 99.3 1.8E-10 3.9E-15 87.5 16.4 120 50-170 219-344 (377)
177 PRK09669 putative symporter Ya 99.3 1.1E-10 2.3E-15 90.9 15.0 130 48-177 251-390 (444)
178 PRK10473 multidrug efflux syst 99.3 1.9E-10 4.2E-15 87.9 15.9 119 51-174 229-348 (392)
179 PRK11043 putative transporter; 99.3 1.8E-10 3.9E-15 88.4 15.7 128 47-175 224-357 (401)
180 TIGR00903 2A0129 major facilit 99.3 1.5E-10 3.4E-15 88.0 15.1 135 35-173 201-340 (368)
181 TIGR00712 glpT glycerol-3-phos 99.3 1.3E-10 2.8E-15 90.3 14.7 131 47-177 272-410 (438)
182 PRK11902 ampG muropeptide tran 99.3 3.1E-10 6.8E-15 87.2 15.2 125 49-177 233-367 (402)
183 KOG0569 Permease of the major 99.3 4.8E-10 1E-14 87.2 16.0 151 23-173 267-428 (485)
184 PF01306 LacY_symp: LacY proto 99.3 2.5E-10 5.3E-15 87.1 14.0 123 55-177 253-377 (412)
185 TIGR00886 2A0108 nitrite extru 99.3 4.4E-11 9.5E-16 90.4 10.0 111 50-161 250-365 (366)
186 COG2807 CynX Cyanate permease 99.3 4.7E-10 1E-14 83.2 14.3 150 29-179 211-363 (395)
187 KOG4686 Predicted sugar transp 99.2 1.1E-10 2.3E-15 84.3 10.4 127 50-178 289-417 (459)
188 PRK11652 emrD multidrug resist 99.2 1.4E-09 3E-14 83.3 16.2 124 51-175 233-360 (394)
189 TIGR02718 sider_RhtX_FptX side 99.2 1.4E-09 3E-14 83.3 15.8 150 28-177 3-161 (390)
190 TIGR00788 fbt folate/biopterin 99.2 1.6E-10 3.5E-15 90.5 10.1 150 26-177 26-186 (468)
191 PLN00028 nitrate transmembrane 99.2 1.1E-10 2.5E-15 91.6 9.1 121 49-170 276-404 (476)
192 TIGR00885 fucP L-fucose:H+ sym 99.2 1.1E-09 2.3E-14 84.6 13.9 127 47-176 253-382 (410)
193 PF06813 Nodulin-like: Nodulin 99.2 6.8E-10 1.5E-14 79.6 11.4 131 41-173 17-155 (250)
194 TIGR00894 2A0114euk Na(+)-depe 99.1 5E-10 1.1E-14 87.6 10.7 147 29-176 264-423 (465)
195 PRK09669 putative symporter Ya 99.1 7.2E-10 1.6E-14 86.3 11.4 129 45-173 29-170 (444)
196 PRK11462 putative transporter; 99.1 5.3E-09 1.2E-13 81.9 15.9 118 59-176 261-388 (460)
197 PF03209 PUCC: PUCC protein; 99.1 2.2E-08 4.8E-13 75.8 18.3 128 48-175 231-363 (403)
198 COG0477 ProP Permeases of the 99.1 5.3E-09 1.1E-13 76.0 14.9 136 40-175 16-158 (338)
199 COG2271 UhpC Sugar phosphate p 99.1 1E-09 2.2E-14 83.0 9.6 152 26-177 252-411 (448)
200 COG2211 MelB Na+/melibiose sym 99.1 1.2E-08 2.5E-13 79.0 15.0 144 34-177 244-398 (467)
201 COG0738 FucP Fucose permease [ 99.0 3.5E-09 7.5E-14 79.7 10.8 147 28-177 238-386 (422)
202 PRK10429 melibiose:sodium symp 99.0 5.7E-09 1.2E-13 82.0 12.5 127 46-172 27-166 (473)
203 PF05978 UNC-93: Ion channel r 99.0 1.2E-07 2.7E-12 63.2 15.8 117 58-175 34-151 (156)
204 KOG0253 Synaptic vesicle trans 99.0 3E-09 6.5E-14 79.4 8.7 97 70-169 390-490 (528)
205 PF06779 DUF1228: Protein of u 99.0 5.7E-09 1.2E-13 61.9 8.1 80 38-117 4-83 (85)
206 PF03825 Nuc_H_symport: Nucleo 99.0 2.8E-08 6E-13 76.4 13.3 109 35-143 11-121 (400)
207 TIGR00924 yjdL_sub1_fam amino 98.9 9.7E-08 2.1E-12 75.2 16.2 113 63-175 314-443 (475)
208 PRK11462 putative transporter; 98.9 4.1E-08 8.8E-13 77.0 12.8 129 46-174 30-171 (460)
209 PF13347 MFS_2: MFS/sugar tran 98.9 4.7E-09 1E-13 81.4 7.4 131 46-176 22-167 (428)
210 PRK09584 tppB putative tripept 98.9 7.4E-07 1.6E-11 70.7 18.1 108 63-170 318-439 (500)
211 TIGR00788 fbt folate/biopterin 98.8 9.8E-09 2.1E-13 80.6 7.4 124 54-177 281-415 (468)
212 PRK09848 glucuronide transport 98.8 1.4E-07 3.1E-12 73.6 13.4 125 46-170 29-172 (448)
213 KOG2563 Permease of the major 98.8 3.3E-08 7.1E-13 75.5 9.3 155 20-175 39-202 (480)
214 PF01306 LacY_symp: LacY proto 98.8 7.6E-08 1.6E-12 73.7 10.9 137 36-174 17-163 (412)
215 PF12832 MFS_1_like: MFS_1 lik 98.8 6E-08 1.3E-12 57.0 8.1 66 35-100 9-74 (77)
216 PRK10207 dipeptide/tripeptide 98.8 5.1E-07 1.1E-11 71.4 14.9 110 63-172 311-438 (489)
217 PRK15403 multidrug efflux syst 98.8 2.1E-06 4.5E-11 66.5 17.6 132 43-175 235-373 (413)
218 KOG3762 Predicted transporter 98.8 1.9E-08 4.2E-13 78.2 6.1 140 38-177 383-524 (618)
219 TIGR00926 2A1704 Peptide:H+ sy 98.7 7.9E-07 1.7E-11 72.3 13.2 127 48-174 10-149 (654)
220 KOG0254 Predicted transporter 98.6 1.4E-06 2.9E-11 69.4 13.8 140 24-164 293-446 (513)
221 KOG3764 Vesicular amine transp 98.6 1.5E-08 3.3E-13 76.2 2.2 125 53-177 298-431 (464)
222 KOG4686 Predicted sugar transp 98.6 1.1E-09 2.4E-14 79.2 -4.0 147 26-172 44-195 (459)
223 TIGR01301 GPH_sucrose GPH fami 98.6 7.8E-06 1.7E-10 64.3 16.5 114 64-177 308-446 (477)
224 PF03137 OATP: Organic Anion T 98.6 7.2E-09 1.6E-13 82.4 -0.3 147 30-176 7-204 (539)
225 KOG2532 Permease of the major 98.6 4E-07 8.8E-12 71.3 8.6 148 26-174 258-418 (466)
226 KOG2816 Predicted transporter 98.5 1.7E-06 3.6E-11 67.7 11.0 104 69-177 70-176 (463)
227 COG2211 MelB Na+/melibiose sym 98.5 3E-06 6.5E-11 65.9 11.9 132 46-177 33-177 (467)
228 PF03209 PUCC: PUCC protein; 98.5 7.7E-06 1.7E-10 62.2 13.2 123 53-176 7-152 (403)
229 KOG2816 Predicted transporter 98.4 4.8E-06 1E-10 65.2 11.8 124 51-174 267-391 (463)
230 KOG0637 Sucrose transporter an 98.4 3.7E-07 8.1E-12 69.9 5.2 140 32-171 38-201 (498)
231 KOG2615 Permease of the major 98.4 7.3E-06 1.6E-10 61.8 11.0 130 45-174 280-413 (451)
232 PF00083 Sugar_tr: Sugar (and 98.3 3.3E-10 7.1E-15 88.2 -14.4 132 43-176 270-412 (451)
233 PF01770 Folate_carrier: Reduc 98.3 2.6E-05 5.5E-10 59.9 12.2 130 46-175 24-155 (412)
234 PF06609 TRI12: Fungal trichot 98.3 1.9E-05 4.2E-10 63.5 11.7 146 28-173 312-465 (599)
235 PF03092 BT1: BT1 family; Int 98.3 2.5E-05 5.5E-10 60.9 12.0 131 46-177 10-152 (433)
236 KOG2533 Permease of the major 98.2 7.8E-06 1.7E-10 64.5 7.7 141 27-167 274-422 (495)
237 KOG0252 Inorganic phosphate tr 98.2 1.1E-06 2.4E-11 67.6 2.8 149 26-174 304-467 (538)
238 PRK15462 dipeptide/tripeptide 98.1 0.00033 7.1E-09 55.5 15.9 111 62-172 309-437 (493)
239 KOG0255 Synaptic vesicle trans 98.1 0.00027 5.8E-09 56.4 14.7 102 73-174 362-467 (521)
240 KOG3626 Organic anion transpor 98.1 7.9E-06 1.7E-10 66.5 5.7 151 27-177 98-301 (735)
241 PF02487 CLN3: CLN3 protein; 98.1 0.00066 1.4E-08 52.2 15.7 112 59-174 279-396 (402)
242 PF11700 ATG22: Vacuole efflux 98.1 0.00055 1.2E-08 54.2 15.7 112 62-173 71-212 (477)
243 PTZ00207 hypothetical protein; 98.0 8.2E-05 1.8E-09 60.0 10.4 145 28-174 355-513 (591)
244 TIGR00769 AAA ADP/ATP carrier 97.9 0.003 6.5E-08 49.9 17.2 141 27-174 8-190 (472)
245 TIGR00805 oat sodium-independe 97.8 0.00022 4.7E-09 58.4 9.9 73 33-105 337-413 (633)
246 PF06963 FPN1: Ferroportin1 (F 97.8 0.0034 7.4E-08 49.0 15.2 142 28-169 260-412 (432)
247 TIGR01272 gluP glucose/galacto 97.7 0.00016 3.5E-09 53.9 7.3 65 110-174 6-71 (310)
248 KOG3098 Uncharacterized conser 97.6 0.00046 1E-08 54.0 8.7 105 66-171 55-160 (461)
249 KOG4332 Predicted sugar transp 97.5 3.9E-05 8.6E-10 55.7 1.7 96 46-142 57-154 (454)
250 TIGR00939 2a57 Equilibrative N 97.3 0.016 3.4E-07 45.5 13.9 112 62-174 308-433 (437)
251 KOG3097 Predicted membrane pro 97.3 0.0046 1E-07 46.2 9.6 99 26-131 29-127 (390)
252 COG2270 Permeases of the major 97.3 0.0026 5.5E-08 49.0 8.4 105 61-165 58-167 (438)
253 KOG3762 Predicted transporter 97.3 9.3E-05 2E-09 58.3 0.8 72 39-110 24-96 (618)
254 KOG1330 Sugar transporter/spin 97.2 0.00051 1.1E-08 53.3 4.7 120 56-175 278-412 (493)
255 PRK03612 spermidine synthase; 97.1 0.086 1.9E-06 42.5 16.1 117 56-173 45-169 (521)
256 KOG1237 H+/oligopeptide sympor 97.0 0.037 7.9E-07 45.0 13.4 134 43-176 55-221 (571)
257 COG3104 PTR2 Dipeptide/tripept 97.0 0.04 8.6E-07 43.6 12.9 110 61-170 324-451 (498)
258 PF00854 PTR2: POT family; In 96.9 0.0024 5.3E-08 48.8 5.7 86 92-177 2-100 (372)
259 KOG2563 Permease of the major 96.6 0.015 3.3E-07 45.3 7.6 148 28-176 268-422 (480)
260 PF03092 BT1: BT1 family; Int 96.4 0.021 4.5E-07 44.8 7.8 120 58-177 252-382 (433)
261 PF03137 OATP: Organic Anion T 96.3 0.0011 2.3E-08 53.3 0.0 150 26-175 305-514 (539)
262 KOG3574 Acetyl-CoA transporter 96.3 0.059 1.3E-06 41.5 9.0 139 26-167 31-187 (510)
263 KOG3098 Uncharacterized conser 96.2 0.44 9.5E-06 37.7 14.1 102 62-164 280-403 (461)
264 PF01770 Folate_carrier: Reduc 95.7 0.4 8.7E-06 37.4 11.5 100 59-158 283-385 (412)
265 KOG2325 Predicted transporter/ 95.3 0.018 4E-07 45.5 3.2 158 20-177 256-452 (488)
266 PF02487 CLN3: CLN3 protein; 95.0 0.35 7.7E-06 37.6 9.4 103 64-171 62-165 (402)
267 COG3202 ATP/ADP translocase [E 94.2 2.3 5E-05 34.0 17.3 153 20-175 21-210 (509)
268 TIGR00806 rfc RFC reduced fola 94.1 0.69 1.5E-05 37.0 9.2 97 62-158 299-398 (511)
269 KOG1479 Nucleoside transporter 93.9 0.38 8.3E-06 37.3 7.3 109 63-173 284-403 (406)
270 PF01733 Nucleoside_tran: Nucl 93.8 0.022 4.8E-07 42.6 0.5 107 65-172 186-307 (309)
271 PF03219 TLC: TLC ATP/ADP tran 93.6 3.1 6.8E-05 33.5 18.5 151 20-174 18-205 (491)
272 KOG3880 Predicted small molecu 92.0 0.91 2E-05 34.2 6.6 109 62-172 289-401 (409)
273 KOG3626 Organic anion transpor 91.4 1.1 2.4E-05 37.6 7.2 76 27-102 393-472 (735)
274 KOG0637 Sucrose transporter an 91.1 3.9 8.3E-05 32.6 9.5 68 64-131 335-402 (498)
275 KOG3810 Micronutrient transpor 89.9 0.16 3.5E-06 38.7 1.2 129 47-175 26-156 (433)
276 KOG3810 Micronutrient transpor 89.5 8.3 0.00018 29.9 9.9 94 64-157 274-370 (433)
277 PF06963 FPN1: Ferroportin1 (F 87.7 12 0.00027 29.6 15.9 143 35-177 11-177 (432)
278 PF13000 Acatn: Acetyl-coenzym 85.5 5.6 0.00012 32.1 7.3 139 31-169 5-174 (544)
279 TIGR00880 2_A_01_02 Multidrug 84.4 7.6 0.00017 24.2 9.7 41 62-102 88-128 (141)
280 KOG3574 Acetyl-CoA transporter 84.3 19 0.0004 28.5 9.7 128 49-176 288-432 (510)
281 PF13000 Acatn: Acetyl-coenzym 80.5 30 0.00065 28.2 10.7 56 121-176 412-468 (544)
282 PF02694 UPF0060: Uncharacteri 79.2 4.3 9.3E-05 25.2 3.6 48 61-108 54-101 (107)
283 PRK02237 hypothetical protein; 76.0 8.8 0.00019 23.9 4.4 48 61-108 56-103 (109)
284 PF07672 MFS_Mycoplasma: Mycop 75.8 29 0.00064 25.6 11.8 100 64-164 144-254 (267)
285 KOG4332 Predicted sugar transp 73.8 36 0.00078 25.7 10.7 97 63-159 284-390 (454)
286 PF11947 DUF3464: Protein of u 71.7 19 0.00041 24.1 5.4 50 113-164 96-145 (153)
287 COG1268 BioY Uncharacterized c 71.5 28 0.00061 24.1 6.5 24 67-90 88-111 (184)
288 COG2233 UraA Xanthine/uracil p 69.0 58 0.0013 26.1 8.5 98 52-149 40-141 (451)
289 KOG1237 H+/oligopeptide sympor 68.6 22 0.00047 29.4 6.3 63 114-176 458-521 (571)
290 PF13955 Fst_toxin: Toxin Fst, 64.5 1.8 3.9E-05 18.3 -0.3 16 162-177 3-18 (21)
291 KOG4830 Predicted sugar transp 64.5 12 0.00025 27.9 3.7 60 34-93 25-93 (412)
292 KOG1479 Nucleoside transporter 64.1 71 0.0015 25.3 10.0 37 114-151 117-154 (406)
293 PF11299 DUF3100: Protein of u 63.7 6.8 0.00015 28.1 2.3 51 120-171 177-228 (241)
294 TIGR03173 pbuX xanthine permea 62.4 74 0.0016 24.9 9.2 100 50-149 16-117 (406)
295 COG5336 Uncharacterized protei 57.4 46 0.00099 20.9 6.5 33 64-96 45-78 (116)
296 PF02632 BioY: BioY family; I 55.4 59 0.0013 21.6 6.7 26 67-92 59-84 (148)
297 PF03219 TLC: TLC ATP/ADP tran 55.3 1.1E+02 0.0025 24.8 10.8 34 64-97 322-355 (491)
298 KOG3097 Predicted membrane pro 54.8 66 0.0014 24.9 6.2 45 59-103 308-352 (390)
299 TIGR00939 2a57 Equilibrative N 52.1 1.2E+02 0.0026 24.2 8.0 47 114-165 106-153 (437)
300 PF00860 Xan_ur_permease: Perm 50.6 63 0.0014 25.2 5.9 99 50-152 22-129 (389)
301 PLN02878 homogentisate phytylt 48.4 1.1E+02 0.0025 22.8 8.3 76 87-162 195-270 (280)
302 COG2119 Predicted membrane pro 47.4 95 0.0021 21.6 8.0 39 67-105 140-178 (190)
303 TIGR00769 AAA ADP/ATP carrier 47.0 1.5E+02 0.0034 23.9 17.3 58 120-177 272-331 (472)
304 PF10785 NADH-u_ox-rdase: NADH 46.9 62 0.0013 19.3 5.9 41 74-114 31-78 (86)
305 COG4769 Predicted membrane pro 45.9 56 0.0012 22.3 4.2 52 68-125 80-131 (181)
306 KOG2601 Iron transporter [Inor 44.7 1.6E+02 0.0035 23.5 7.1 71 30-100 31-102 (503)
307 PF06341 DUF1056: Protein of u 43.4 60 0.0013 18.2 4.5 17 132-148 46-62 (63)
308 COG4262 Predicted spermidine s 41.6 1.8E+02 0.0038 23.1 14.2 115 23-140 8-132 (508)
309 PRK08168 NADH dehydrogenase su 36.9 2.4E+02 0.0052 23.2 16.5 71 56-127 65-135 (516)
310 TIGR02230 ATPase_gene1 F0F1-AT 36.2 1.1E+02 0.0023 19.0 6.6 20 81-100 62-82 (100)
311 PF07760 DUF1616: Protein of u 35.8 1.8E+02 0.004 21.6 7.0 30 118-147 23-52 (287)
312 PF13493 DUF4118: Domain of un 35.0 1E+02 0.0023 18.5 4.7 23 69-91 83-105 (105)
313 COG3389 Uncharacterized protei 34.8 1.8E+02 0.0039 21.2 5.9 30 67-96 34-63 (277)
314 COG3086 RseC Positive regulato 34.7 1.4E+02 0.003 19.9 6.4 42 55-96 66-107 (150)
315 PF05232 BTP: Bacterial Transm 34.6 89 0.0019 17.6 5.0 42 50-91 23-64 (67)
316 PF04474 DUF554: Protein of un 34.6 1.4E+02 0.0031 21.5 5.2 56 70-126 11-66 (226)
317 PF00854 PTR2: POT family; In 34.2 2.1E+02 0.0046 21.8 7.0 46 64-109 75-120 (372)
318 PRK13743 conjugal transfer pro 33.6 1.4E+02 0.003 19.4 6.2 56 30-85 47-102 (141)
319 PF04281 Tom22: Mitochondrial 30.9 81 0.0018 20.7 3.2 23 138-160 60-82 (137)
320 PRK14229 camphor resistance pr 30.3 1.4E+02 0.0031 18.6 9.6 12 132-143 68-79 (108)
321 PF09605 Trep_Strep: Hypotheti 30.1 1.9E+02 0.0041 20.0 7.7 40 69-108 36-75 (186)
322 PF12173 BacteriocIIc_cy: Bact 29.9 27 0.00058 20.5 0.7 36 56-91 9-44 (91)
323 KOG4830 Predicted sugar transp 29.1 2E+02 0.0044 21.7 5.2 113 31-143 206-323 (412)
324 TIGR00210 gltS sodium--glutama 28.6 3E+02 0.0065 21.8 9.8 101 63-176 278-385 (398)
325 PF14494 DUF4436: Domain of un 28.2 2.2E+02 0.0048 21.0 5.4 42 58-99 198-244 (256)
326 TIGR00801 ncs2 uracil-xanthine 28.0 3.1E+02 0.0066 21.7 10.3 34 54-88 31-64 (415)
327 PF01810 LysE: LysE type trans 26.6 2.1E+02 0.0046 19.4 10.1 50 36-86 109-158 (191)
328 COG1811 Uncharacterized membra 25.9 2.6E+02 0.0056 20.1 5.7 46 71-116 13-58 (228)
329 KOG3880 Predicted small molecu 25.8 19 0.00042 27.5 -0.4 84 63-146 64-147 (409)
330 TIGR03802 Asp_Ala_antiprt aspa 25.6 4E+02 0.0086 22.2 11.1 99 62-165 451-551 (562)
331 PF11990 DUF3487: Protein of u 25.5 1.9E+02 0.0041 18.5 6.3 29 56-84 19-47 (121)
332 PRK10599 calcium/sodium:proton 25.4 3.3E+02 0.0072 21.3 8.9 54 44-100 240-296 (366)
333 COG1380 Putative effector of m 25.3 1.4E+02 0.0031 19.4 3.6 39 53-91 79-117 (128)
334 PRK11375 allantoin permease; P 25.2 3.2E+02 0.0069 22.2 6.3 34 56-89 55-88 (484)
335 PF09930 DUF2162: Predicted tr 24.4 2.8E+02 0.006 20.0 7.7 50 54-106 124-173 (224)
336 PF13940 Ldr_toxin: Toxin Ldr, 24.2 99 0.0022 14.8 2.5 19 69-87 16-34 (35)
337 TIGR00367 K+-dependent Na+/Ca+ 22.9 3.4E+02 0.0073 20.5 8.7 45 46-92 190-234 (307)
338 COG1009 NuoL NADH:ubiquinone o 22.7 4.8E+02 0.01 22.1 7.5 69 59-128 73-141 (606)
339 COG1742 Uncharacterized conser 22.0 56 0.0012 20.3 1.1 43 59-101 53-95 (109)
340 TIGR02185 Trep_Strep conserved 21.6 2.9E+02 0.0062 19.2 6.8 36 69-104 38-73 (189)
341 PF05631 DUF791: Protein of un 21.5 4E+02 0.0086 20.8 9.0 28 61-88 278-305 (354)
342 PRK10692 hypothetical protein; 21.3 2E+02 0.0043 17.3 4.4 19 90-108 3-21 (92)
343 PRK11469 hypothetical protein; 21.2 3E+02 0.0064 19.2 8.4 27 80-106 154-180 (188)
344 TIGR03733 lanti_perm_MutG lant 20.6 3.4E+02 0.0073 19.6 9.6 47 58-104 126-172 (248)
345 PRK14206 camphor resistance pr 20.4 2.5E+02 0.0054 18.0 10.9 42 132-173 79-122 (127)
346 PRK03612 spermidine synthase; 20.1 5E+02 0.011 21.4 9.6 34 61-94 145-179 (521)
347 PF07456 Hpre_diP_synt_I: Hept 20.1 2.8E+02 0.0061 18.5 6.4 51 67-123 67-117 (148)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.91 E-value=2.6e-23 Score=159.77 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.+|.....+++.+.+++++....++..|.+.+|+|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 34567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.++.+++++++|+..+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..++|.+++++.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 8888899999999999999999999999999999999998874
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.90 E-value=1.4e-22 Score=164.00 Aligned_cols=160 Identities=29% Similarity=0.651 Sum_probs=148.0
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356 16 NHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL 95 (179)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~ 95 (179)
++.+..+.+|.+++.+.++.+..+++....+...|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li 236 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL 236 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44556778888888888888889998998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 96 GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++.++.+++.++++++++++.+++.|++.|++.++. +....++.|++|+++|++.+++++..+.+|.++++.++..+..
T Consensus 237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999998887765
Q ss_pred c
Q 030356 175 L 175 (179)
Q Consensus 175 ~ 175 (179)
.
T Consensus 317 ~ 317 (742)
T TIGR01299 317 H 317 (742)
T ss_pred h
Confidence 3
No 3
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.89 E-value=4.6e-23 Score=160.73 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=140.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356 19 GFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
...+..+..+..+++.+...+.++...+...|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~ 101 (467)
T PRK09556 22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL 101 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence 34455667777888888888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 99 MLASVAGLLSAF-----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 99 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
++.++..+..+. ++++..+++.|++.|++++.. +....++.|++|+++|++++++++.+..+|..+++.+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 888777766554 578999999999999999988 88889999999999999999999999999999999888776
Q ss_pred hcc
Q 030356 173 ILL 175 (179)
Q Consensus 173 ~~~ 175 (179)
.+.
T Consensus 182 ~~~ 184 (467)
T PRK09556 182 ANY 184 (467)
T ss_pred HHh
Confidence 653
No 4
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.1e-22 Score=149.38 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+..+..++.+.++.+..+...+.....+|.+.+|+|.|+.++|+..+.+.++..+++|+...++||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34456677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+++++++||..+++.|++.|+..|.. +...+...+..|+++|++++++...+..++.++|.+++.++-+..|
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999998875
No 5
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.89 E-value=7.3e-22 Score=150.60 Aligned_cols=157 Identities=20% Similarity=0.325 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
++++|+....+.+..+...++........|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 101 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++.+.+.+++++..+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999988 8889999999999999999999999999999999999998876543
No 6
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.89 E-value=2.6e-21 Score=149.61 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
..++.......+..+....+........|.+.+++|.|+++.+++.+.+.++..+++++.|++.||+|||+++.++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 34555666666777777777777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+++.++++++.+++.|++.|++.|.. +....++.|++|+++|++++++++....+|..++|.+.+++.+..+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999887 8888999999999999999999999999999999999999887654
No 7
>PRK03545 putative arabinose transporter; Provisional
Probab=99.88 E-value=1.5e-21 Score=149.02 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356 25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104 (179)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~ 104 (179)
|.....+.++.+.............|.+.+|+|.|+++.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33334444443444344445556678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 105 GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.+.+++|++.+++.|++.|++.+.. +...+++.|++|+|+|+++++++..+..+|..++|++++.+.+..+
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 999999999999999999999999887 8888999999999999999999999999999999999999887654
No 8
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.88 E-value=2.5e-21 Score=148.08 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV 103 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~ 103 (179)
.|+....+..+.+......+......|.+.+++|.++++.++..+...++..+++++.|++.||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 44444444444444555555556667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.+.+.++++++.+++.|++.|++.+.. +...+++.|++|+|+|+++.++.....++|..++|.+++++.+..+
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g 172 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG 172 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998 8889999999999999999999999999999999999999987654
No 9
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4e-22 Score=148.62 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=149.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM 99 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~ 99 (179)
.++.++.+++.+++++...+..+-.+....|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++||.+.|+.+..+++
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhccC
Q 030356 100 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA--WGNILLN 176 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~~~~~~ 176 (179)
+.++..+++.++++...+.+..++.|..+|.. |++...+.+|+|+++||+..++++++.++|+.+.|++. +++.++.
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999 7777654
No 10
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.88 E-value=4.1e-21 Score=147.94 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.+++....+.+..+...++.....+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45556677778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+...++++++.+++.|++.|++.+.. +....++.|++|+|+|+++.++++.+..+|..+++.+...+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 999999999999999999999999999988 8889999999999999999999999999999999999888776543
No 11
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.88 E-value=2.2e-21 Score=152.33 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV 103 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~ 103 (179)
+|..+..++++.+....+..+.+...|.+.+|+|.++++.+|+.+.+.++..++.++.|+++||+|||++++.+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.+.+++++|++.+++.|+++|++.+.. +.....+.+.+ |+++|+++++++.....+|..++|.+++++.+..+
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999887 77777777776 67999999999999999999999999999998765
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.87 E-value=9.5e-21 Score=145.08 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
.+++|......++..+.++++........|.+.+++|.++++.+++.+...++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 34667777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 101 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
..+..+.+.+++++..+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.++..+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888888999999999999999999888 888999999999999999999999999999999999987776543
No 13
>PRK03699 putative transporter; Provisional
Probab=99.87 E-value=1.1e-20 Score=144.45 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356 23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS 102 (179)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~ 102 (179)
++++....+++.++..+......+...|.+.+++|.|+++.+++.+...++..+++++.|++.||+|||+++..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44566667777788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 103 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
++.++..++++++.+++.|++.|++.+.. +....++.|++|+++|+++++..+....+|+.++|.+.+++.+..
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 158 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS 158 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999887 788899999999999999999999999999999999988877543
No 14
>TIGR00895 2A0115 benzoate transport.
Probab=99.87 E-value=2e-20 Score=142.14 Aligned_cols=158 Identities=29% Similarity=0.418 Sum_probs=142.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM 99 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~ 99 (179)
.++++++......+..+...++.....+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 34455666666666777777778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 100 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+..++.++..+.+++..+++.+++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 99998888888899999999999999999988 8899999999999999999999999999999999999999887544
No 15
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.87 E-value=2.4e-20 Score=146.29 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.+++.+..+++..+...++........|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45667777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+.+.++++++.+++.|++.|++.+.. +....++.|.+|+++|+++++++.....+|..++|.+++.+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999887 8888999999999999999999999999999999999998887543
No 16
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.3e-22 Score=151.27 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+..++...++++...++..+.+.+....+...+.+|+++++.|++.+.+.+...+++|+.|+++||+.||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34456677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
.++.+..++++.++++.++|.+.|+|.+.. +..+++++|.+|.++|++.+++++.+..+|.++|.+++..+.++.+.|
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999998887755
No 17
>PRK10133 L-fucose transporter; Provisional
Probab=99.86 E-value=1.8e-20 Score=145.03 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.....+..+.+.++.............|.+++++|.|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 44455566667777888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 102 SVAGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 102 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
+++.+++ ..++++..+++.|++.|++.+.. +..+.++.|..|+++|...+++.+..+.+|..++|.++..+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998775 45789999999999999999998 888899999877777777899999999999999999988765
No 18
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.86 E-value=2.2e-20 Score=144.42 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccC---CCchhHHH---HHHHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWN---LSPAQETL---LTSVVFAGLLVGSYSWGFISDNYGRRKGLL 95 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~---~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~ 95 (179)
+++++.+....++.+.+.++...++...|.+.+|++ .+..+.+. +.+...++..+++++.|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344556667777888999999999999999999974 44554433 444555555599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356 96 GIAMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA 166 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 166 (179)
.+.++++++.+.+++++++. .+++.|+++|++.|.. +...+++.|++|+++|+++.++.+.....|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877653 5788999999999998 88999999999999999999998888888888887
Q ss_pred HHHHHHh
Q 030356 167 ALAWGNI 173 (179)
Q Consensus 167 ~i~~~~~ 173 (179)
.+...+.
T Consensus 178 ~~~~~~~ 184 (432)
T PRK10406 178 LVVVVLQ 184 (432)
T ss_pred HHHHHHH
Confidence 7655543
No 19
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.86 E-value=1.6e-20 Score=146.74 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
....++++.+...++........|.+.+++|.++++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44566667788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+++++..+++.|++.|++.+.. +...+++.|++|+++|+++.+++.....+|..++|.+++++.+..+
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 9999999999999999999999988 8899999999999999999999999999999999999999987654
No 20
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.85 E-value=2.2e-20 Score=141.63 Aligned_cols=140 Identities=18% Similarity=0.086 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
+........+..|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......+++..+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34455667788899999999999999999999999999999999999999999988766555544443333333689999
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 118 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 118 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.|++.|++.+........+.|++|+|+|++++++.+.+..+|..++++++.++.+..+
T Consensus 83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g 142 (368)
T TIGR00903 83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG 142 (368)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999998655556666999999999999999999999999999999999987654
No 21
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.85 E-value=5.6e-20 Score=143.74 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=129.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356 19 GFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
..++++++.........+..........+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 29 SFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34444556666666677777777777888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 99 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
++.+++.++.++++++..+++.|++.|++.+.......++.|++|+++|++++++.+....+|..+++.+...+
T Consensus 109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999998876644556789999999999999998877777777666555443
No 22
>PRK10504 putative transporter; Provisional
Probab=99.85 E-value=5.4e-20 Score=143.53 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
....++++.++...+........|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34555666777888888888888999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.++++.+.+++.|++.|++.+.. +.....+.|.+|+++|+++.++++....+|..++|.+++++.+..+
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 8888889999999999999999998 8889999999999999999999999999999999999999987654
No 23
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.85 E-value=5.2e-20 Score=139.71 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
.............+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.+.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 92 (385)
T TIGR00710 13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92 (385)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455556666777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+.+.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999988 8889999999999999999999999999999999999998877543
No 24
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.85 E-value=2.2e-20 Score=142.76 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=125.4
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (179)
....+..|.+.+|+|.|.++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+++++++..+++.|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
+.|++.+.. +.....+.|++| ++|+++++++..+...|..+++.++.++.++..+|
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 999999988 777888899987 88999999999999999999999998887765333
No 25
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.85 E-value=5.2e-20 Score=140.67 Aligned_cols=133 Identities=14% Similarity=0.057 Sum_probs=126.2
Q ss_pred HHHHHHhhhcchhcccCCCchh-HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 41 EIMILSFIGPAIKSEWNLSPAQ-ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVT 119 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (179)
.+...++..|++.+|+|+|++| .+.+.+.++.+++++.++.|+++||+|.|+++..+.+.+++...+..++++...+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 120 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 120 ~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
.|++.|++.|.......++.+++|+++|+++.++.+.+..+|.+++++++.++.
T Consensus 121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987778899999999999999999999999999999999999944
No 26
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.85 E-value=7.7e-20 Score=142.14 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
++++|..+..+.+.......+........|++.++ |.+..+.++..+...++..+++++.|+++||+|||++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 44555555555556666666666667778888888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHH
Q 030356 101 ASVAGLLSAFSL----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALA 169 (179)
Q Consensus 101 ~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~ 169 (179)
.++..+.+++.+ ++..+++.|++.|++.+.. +.....+.|++|+++|++++++++.+..+|..+ +|+++
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 998888877653 6778888999999999887 777788899999999999999999999998754 55543
No 27
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.85 E-value=5.7e-20 Score=140.00 Aligned_cols=149 Identities=17% Similarity=0.096 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
.......+.............|.+.+|+|.+.++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 34444556666677777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.++++++.+++.|++.|++.+.. +.....+.|++|+++|+++++++..+..+|..++|++++++.+..+
T Consensus 86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 155 (382)
T PRK10091 86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS 155 (382)
T ss_pred HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence 99999999999999999999987 7778888999999999999999999999999999999998877543
No 28
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.85 E-value=7.2e-20 Score=139.37 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL 107 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~ 107 (179)
...+.++.+..........+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677777888888899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+.++++++.+++.|++.|++.+.. +.....+.+..++++|+++++.++....+|..++|.+++.+.+.
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 899999999999999999999887 77777888899999999999999999999999999999987654
No 29
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.85 E-value=2.2e-19 Score=138.40 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
+..++.+....+.+..........++..+.+.+ |+|+|++|.+++.++..+++.+++++.|++.||+|.|+++..+.++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 334567777778888888888899998888876 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 101 ASVAGLLSAFS-----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 101 ~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
..+..+..+++ +++..+++.|++.|++ +.. +.....+++++|+++||++++++....++|..+++++..
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999988876 7999999999999998 455 888999999999999999999996556666655444443
No 30
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.85 E-value=1.6e-19 Score=142.08 Aligned_cols=159 Identities=19% Similarity=0.333 Sum_probs=139.7
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc-----CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 030356 15 LNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW-----NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG 89 (179)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G 89 (179)
.++.+..+.+++....+.++.+.++++....+...|.+.+++ +.+..+.+++.+...++..+++++.|+++||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G 84 (502)
T TIGR00887 5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG 84 (502)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566778888888899999999999999888888776542 345567789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 030356 90 RRKGLLGIAMLASVAGLLSAFSLN------YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT 162 (179)
Q Consensus 90 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 162 (179)
||+++..+.++..++.++++++++ +..+++.|++.|++.|.. +....++.|++|+++|+++.++.+....+|.
T Consensus 85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999888887654 678899999999999998 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 030356 163 IFEAALAWGNI 173 (179)
Q Consensus 163 ~~~~~i~~~~~ 173 (179)
.+++.++..+.
T Consensus 165 ~~g~~~~~~~~ 175 (502)
T TIGR00887 165 LAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHH
Confidence 99998887664
No 31
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.84 E-value=8.3e-20 Score=136.82 Aligned_cols=144 Identities=31% Similarity=0.392 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356 33 LGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS 111 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 111 (179)
+..+..........+..| .+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+...++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 445666666677777778 8889999999999999999999999999999999999999999999999999996666666
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
++.+.+++.|++.|++.+.. +....++.|++|+|+|++++++.+....+|..++|.+++.+.+..
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 148 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF 148 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence 77778899999999999888 889999999999999999999999999999999999999988554
No 32
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.84 E-value=1.4e-19 Score=141.16 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=139.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhc----------------------ccCCCchhHHHHHHHHHHHHHHHH
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKS----------------------EWNLSPAQETLLTSVVFAGLLVGS 78 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~~~i~~ 78 (179)
.+.++.+...++++....+.++...+...+.+.+ |++.+..+.+++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4566778888888888899999998888877766 788999999999999999999999
Q ss_pred HHHhhhhccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHH
Q 030356 79 YSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVIS 155 (179)
Q Consensus 79 ~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~ 155 (179)
++.|+++||+|||+++..+.++..+..++..++ .++..+++.|++.|++.+.. +....++.|++|+++|++++++.+
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999888888776543 45778889999999999998 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 030356 156 IFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 156 ~~~~~g~~~~~~i~~~~~~~~ 176 (179)
.+..+|..++|++++++.+..
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~ 194 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESW 194 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988763
No 33
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.84 E-value=2.1e-19 Score=137.77 Aligned_cols=156 Identities=17% Similarity=0.084 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
++.+.....+.+..+...+......+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+....
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44556666666666677777777777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+...++++++.+++.|++.|++.+.. +...+.+.|.+|+++|.++.++......++..++|.+++++.+..+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999988888999999999999999999887 7788999999999999999999888888999999999999887654
No 34
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.84 E-value=9.3e-20 Score=142.35 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc--------CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW--------NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG 93 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~ 93 (179)
+...+......++.+..+++...++...|.+.+++ +.++.+.+++.+.+.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44556667777788888888888887777777665 7888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH
Q 030356 94 LLGIAMLASVAGLLSAFS------------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL 160 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 160 (179)
++.+..+.+++.+..++. +.+..+++.|++.|++.|.. +...+++.|++|+++|++++++.+....+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999988887776652 23466789999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030356 161 GTIFEAALAWGNI 173 (179)
Q Consensus 161 g~~~~~~i~~~~~ 173 (179)
|..+++.++..+.
T Consensus 168 G~~~~~~~~~~~~ 180 (479)
T PRK10077 168 GQLVVYFVNYFIA 180 (479)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988877654
No 35
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.84 E-value=2.8e-19 Score=140.31 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchh-HHH-----HHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356 25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ-ETL-----LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
++......++.+++++|.....+..|.+.++++.+.++ ..+ ..++..++..+++++.|+++||+|||+++..+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566777888999999999999999999988644322 122 257788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 99 MLASVAGLLSAFSLNYLS--------LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 169 (179)
++++++.+++++++|+.. +++.|+++|++.|.. +....++.|++|+++|++..++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 788999999999998 88999999999999999999999988888888887666
Q ss_pred HHHh
Q 030356 170 WGNI 173 (179)
Q Consensus 170 ~~~~ 173 (179)
..+.
T Consensus 175 ~~~~ 178 (490)
T PRK10642 175 VLIS 178 (490)
T ss_pred HHHH
Confidence 5543
No 36
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.84 E-value=7.8e-20 Score=139.80 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
.+.+..+..........+..|. +.+++|.|+.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+.+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence 3444455566666666666665 567899999999999999999999999999999999999999999998887776654
Q ss_pred HHH--------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 109 AFS--------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 109 ~~~--------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.++ .++..+++.|++.|++.+.. +....++.|+.|+|+|+++++++.....+|..++|.+++.+.+..+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 432 25667889999999999988 8888889999999999999999999999999999999999887654
No 37
>PRK15075 citrate-proton symporter; Provisional
Probab=99.84 E-value=2.3e-19 Score=138.80 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHH-HHHHH-----HHHHHHHHHHHhhhhccccchhHHHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETL-LTSVV-----FAGLLVGSYSWGFISDNYGRRKGLLGI 97 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~-----~~~~~i~~~~~g~l~d~~G~r~~~~~~ 97 (179)
|++....++++.+.+++|........|.+.+|++.++.+.+. ..+.. .++..+++++.|+++||+|||++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 445677888899999999999999999999999988776543 33332 223347899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q 030356 98 AMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAAL 168 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 168 (179)
.++..++.+++++++++. .+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 3688999999999988 8788999999999999999999999888888888888
Q ss_pred HHHHh
Q 030356 169 AWGNI 173 (179)
Q Consensus 169 ~~~~~ 173 (179)
+..+.
T Consensus 173 g~~l~ 177 (434)
T PRK15075 173 GYLLN 177 (434)
T ss_pred HHHHH
Confidence 77764
No 38
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.84 E-value=2.5e-19 Score=137.87 Aligned_cols=147 Identities=16% Similarity=0.079 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 030356 31 AGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF 110 (179)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~ 110 (179)
+.+..+..........+.+|.+.++++.+.++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.+.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 33344445555566667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 111 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 111 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++++..+++.|+++|++.+.. +....++.|++|+++|++++++++....+|..++|.+++.+.+..+
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g 168 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH 168 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998766 6667888999999999999999999999999999999998886543
No 39
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.83 E-value=4.9e-20 Score=139.54 Aligned_cols=142 Identities=28% Similarity=0.340 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL 115 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 115 (179)
..+..+....+...|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+++..+.++.+++...++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 45667777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++.|++.|++.+.. +....++.|++|+|+|++++++.+....+|..++|.+++.+.+..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999988 8889999999999999999999999999999999999998876544
No 40
>PRK12382 putative transporter; Provisional
Probab=99.83 E-value=2.3e-19 Score=136.93 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---
Q 030356 33 LGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS--- 108 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~--- 108 (179)
+..+..........+..|. +.+|+|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.+...++.+..
T Consensus 22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (392)
T PRK12382 22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA 101 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555564 568899999999999999999999999999999999999999998887766654322
Q ss_pred H-----HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 109 A-----FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 109 ~-----~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
. ..+++..+++.|++.|++.+.. +...+++.|++|+|+|++++++++.+..+|..++|++++++.+..+
T Consensus 102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 102 AILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 1357888999999999999887 7778899999999999999999999999999999999998877654
No 41
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.83 E-value=7.1e-19 Score=134.36 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356 25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104 (179)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~ 104 (179)
++..........+.........+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.....++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 34444444445555566666667778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 105 GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.+.+++++..+++.|++.|++.+.. +.......|.+++++|+++.+.++.+..++..++|.+++++.+..+
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 160 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG 160 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 988888999999999999999998877 7777888999999999999999999999999999999999887544
No 42
>PRK09952 shikimate transporter; Provisional
Probab=99.83 E-value=7.3e-19 Score=136.20 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhccc--CCCchhHHHHH-----HHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPA-IKSEW--NLSPAQETLLT-----SVVFAGLLVGSYSWGFISDNYGRRKGLL 95 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~G~r~~~~ 95 (179)
+++......++.+.++++.....+..|. +.+++ +.++.+ +++. ++..++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 3456777777889999999998887764 45554 566653 4443 3455667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356 96 GIAMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA 166 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 166 (179)
.+.++++++.+++++++++. .+++.|+++|++.|.. +....++.|++|+++|++..+..+.+..+|..+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 4788999999999998 88889999999999999999999999999999988
Q ss_pred HHHHHHhc
Q 030356 167 ALAWGNIL 174 (179)
Q Consensus 167 ~i~~~~~~ 174 (179)
.+..++..
T Consensus 179 ~~~~~l~~ 186 (438)
T PRK09952 179 GLVSLISM 186 (438)
T ss_pred HHHHHHHH
Confidence 77776653
No 43
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.83 E-value=6e-19 Score=133.21 Aligned_cols=145 Identities=23% Similarity=0.273 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
..+++++..........+..|. +.+++|.|+.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3445556666677777888885 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 109 AFSL-NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 109 ~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.+++ +++.+++.|++.|++.+......+++.|++|+++|+++++++.....+|..+++.++..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999865446678899999999999999999997777777777776665543
No 44
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.82 E-value=1.2e-19 Score=136.91 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
.....+......|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33345567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
++.|++.|++.+.. +.....+.|++| |+|+++.++...+..+|..+++++...+.+.
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL 152 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence 99999999999877 777778888887 6799999999999999988776666655543
No 45
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.82 E-value=3.6e-19 Score=133.88 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL- 112 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~- 112 (179)
..+.............|.+.++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..++..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667888888999999999999999999999999999999999999999999998888888887777
Q ss_pred ----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 ----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 ----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus 87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999988 8889999999999999999999999999999999999999886543
No 46
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.82 E-value=4.9e-19 Score=137.13 Aligned_cols=151 Identities=18% Similarity=0.150 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356 23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS 102 (179)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~ 102 (179)
.++..+....+.......+........|.+.+ +|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 34555555556666666666666667777775 59999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 103 VAGLLSAFS----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 103 ~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++.+..... +++..+.+.|++.|++.+.. +.....+.|++|+++|++++++++....+|+.++|.+.+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888776653 45667788899999999988 7788889999999999999999999999999999887776544
No 47
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.82 E-value=1e-18 Score=133.71 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
+.++............+.+.+|++.++.+.+++.+.+.+++.+..++.|+++||+|||++++.+.++.+++.+.+.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~ 90 (393)
T PRK11195 11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH 90 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444443333344445567888989999999999999999999999999999999999999999998888877766665
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
. ++.|+++|++.+.. |...+++.|++|+|+|++++++.+....+|..++|.+++++.+.
T Consensus 91 ~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 91 P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 67899999999998 99999999999999999999999999999999999999998763
No 48
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.81 E-value=1.1e-18 Score=130.37 Aligned_cols=145 Identities=28% Similarity=0.358 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356 32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS 111 (179)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 111 (179)
.+..+.............|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.....++.+.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 34456667777777888888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+++..+++.|++.|++.+.. +...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 889999999999999999999999999999999999999988754
No 49
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.81 E-value=2e-19 Score=139.49 Aligned_cols=143 Identities=22% Similarity=0.362 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCC--------chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLS--------PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
....+.+..+...++........+.+..+++.+ ..+.+++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 108 (481)
T TIGR00879 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA 108 (481)
T ss_pred HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence 333444444556666667777778777777666 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 99 MLASVAGLLSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169 (179)
Q Consensus 99 ~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 169 (179)
++..++.++....+ +++.+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99988888875543 4457889999999999988 88899999999999999999999999999999999998
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.81 E-value=2.1e-18 Score=131.71 Aligned_cols=142 Identities=22% Similarity=0.189 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY 114 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 114 (179)
.+.............|.+.+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.+...++...+..+++.
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~ 91 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS 91 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34444444455567799999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
..+++.|++.|++.+.. +....++.|.+|+++|+++.++.+....++..++|.+++.+.+..
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~ 154 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF 154 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999887 788899999999999999999999999999999999998887654
No 51
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.81 E-value=1.6e-19 Score=136.34 Aligned_cols=143 Identities=23% Similarity=0.261 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
.++....+........|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 34566777788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhccC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA-ALAWGNILLN 176 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~~~~~~ 176 (179)
++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++| .++..+.+..
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 147 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY 147 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence 999999999999999988 88999999999999999999999999999999999 4666555443
No 52
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.81 E-value=2e-19 Score=132.57 Aligned_cols=122 Identities=25% Similarity=0.230 Sum_probs=112.8
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 030356 53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGP 132 (179)
Q Consensus 53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 132 (179)
.++.+.+..-.|.+-+.+.++..+.++.+|.++||+|||+++++++...++...+.+.++|+..+...|++.|+.-|...
T Consensus 60 ~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~ 139 (451)
T KOG2615|consen 60 GEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS 139 (451)
T ss_pred CCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH
Confidence 33444456678999999999999999999999999999999999999999999999999999777777999999999889
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+..++++|++++|+|+.+++...+++++|.++||.+++++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999999999999999999999886
No 53
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.81 E-value=7.5e-19 Score=136.73 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
..++|.++..+.+............+...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 34566666666666555555555567778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 101 ASVAGLLSAFSLNYLSLVT-LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..++.+.++++++++.+++ .|++.|++.+.. +.....+.+++| ++|+++.++.+.+..+|..++|.+++.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 9999998888888888765 468999999876 666778889986 789999999999999999999999999887654
No 54
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.80 E-value=3.5e-18 Score=131.39 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL 107 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~ 107 (179)
+..++..++..++......+..|.+++++|.|+.+.+++.+...+++.+++++.|++.||+|||+++..+.++.+++..+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34555666777777788888899999999999999999999999999999999999999999999999999999998877
Q ss_pred HHH---HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 108 SAF---SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 108 ~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+.. .++++.+++.+++.|++.+.. +...+++.+..|+++|++.+++.+...++|..++|.++..+..
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 644 357888999999999999998 8889999999999999999999999999999999999998864
No 55
>PRK11043 putative transporter; Provisional
Probab=99.80 E-value=4.6e-18 Score=130.15 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL 115 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 115 (179)
...........+..|.+.+++|.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+.+.++++++
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 95 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA 95 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33444445555666778899999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++.|++.|++.+.. +...+.+.|++|++++++..+..+....++..++|.+++++.+..+
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998877 7677889999999999999999988999999999999999887654
No 56
>PRK10054 putative transporter; Provisional
Probab=99.80 E-value=6.6e-18 Score=129.29 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHH-hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 35 LVAEAMEIMILS-FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
.++......... ...+++.+++|.|+.+.+++.+...++..+++++.|+++||+|||++++.+.+...++.+...+.++
T Consensus 16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~ 95 (395)
T PRK10054 16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN 95 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444 4445667789999999999999999999999999999999999999999999988888888889999
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++.+++.+.+.|.+.+.. +....+..|..|+++|+++.++.+....+|..++|.+++++.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888877766 7788999999999999999999999999999999999998875
No 57
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.79 E-value=1e-17 Score=128.30 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhcccCCCchh-----HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ-----ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~ 104 (179)
.+.++.++.........+..|.+.+++|.+..+ .+++.++..++..+++++.|+++||+|||+++..+.+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 334455566666667777888888899888655 488999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 105 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..++.+.++++.+++.|++.|++.+..+.....+.|.+|+++|++++++++....+|..++|.+++.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 170 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG 170 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888999999999999999765446677888999999999999999999999999999999999876543
No 58
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.79 E-value=3.3e-18 Score=129.81 Aligned_cols=135 Identities=17% Similarity=0.290 Sum_probs=124.8
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (179)
....+..|.+.+++|.|+++.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++...+.+.++++.+++.|+
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF 87 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 44456678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 143 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999888 8888999999999999999999999999999999999998887543
No 59
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.78 E-value=7.2e-18 Score=132.12 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=121.2
Q ss_pred HHHHHHHH-HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIM-ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 36 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
+...+.++ .......++.+++|.++++..++.+.+.....+..++.|+++|| +|||++++.+.++..++.+.+.++++
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~ 103 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL 103 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444 44455566778899999999999999998999999999999999 99999999999999999999888765
Q ss_pred HH-HHHHHHHHHHhhcCch-hhHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 114 YL-SLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 114 ~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.. .+++.+.++|++.|.. +...+++.|.+|++ +|+++.+++..+.++|..++|.+++++.+..|
T Consensus 104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33 3557899999999998 88899999999987 45789999999999999999999999988765
No 60
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.78 E-value=1.1e-17 Score=128.31 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=111.5
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHH
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---F-SLNYLSLVTLRGL 123 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l 123 (179)
..+.+.+|+|.|+++.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+.+. . .+++..+++.|++
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 114 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI 114 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 34556688999999999999999999999999999999999999999999988888766542 2 2467788889999
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhccCC
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT-IFEAALAWGNILLNS 177 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~ 177 (179)
.|++.+.. +.....+.+++|+++|++++++++....+|. .++|.+++++.+..+
T Consensus 115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99988776 6677888899999999999999999999996 578999888876544
No 61
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.77 E-value=1.3e-18 Score=139.80 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
+...+..+............++.+.++++++.++.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 44445566666777788888899999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhhcCch-hhHHH
Q 030356 109 AFSL---------------------------------------------------NYLSLVTLRGLVGIGLGSG-PVCLS 136 (179)
Q Consensus 109 ~~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~ 136 (179)
++.+ .+..+++.|+++|++.+.. +...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7653 2445678999999999998 88999
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 137 WFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 137 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
++.|++|+++|+.+.++++....+|..+++++++++.+.+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988654
No 62
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.77 E-value=2.8e-17 Score=126.05 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=119.6
Q ss_pred HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 45 LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 45 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
.+...+++.+++|.|+.+.++..+...+...+.+++.|+++||+|||+++..+..+.++..+.+.+.++.+.+++.|++.
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444567788999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
|++.+.. +...+++.|++|+|+|++++++......+|..++|.+++++.+
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877 7888999999999999999999999999999999999999873
No 63
>TIGR00898 2A0119 cation transport protein.
Probab=99.77 E-value=6.3e-18 Score=133.02 Aligned_cols=127 Identities=33% Similarity=0.611 Sum_probs=118.9
Q ss_pred hhhcchhcccCCC---chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLS---PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL 123 (179)
Q Consensus 47 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
...|.+.+|+|++ +.+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4557889999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
.|++.+.. +....++.|++|+++|+++.+++..+..+|..++|.++..+.
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998 889999999999999999999999999999999999887654
No 64
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.77 E-value=2.3e-17 Score=129.04 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhhhcch-hcc--cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHH
Q 030356 33 LGLVAEAMEIMILSFIGPAI-KSE--WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~ 108 (179)
...+.....++.....+|.+ .++ +|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 34455555555545555544 455 89999999999999999999999999999999 899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN---RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++++...+.+.+++.|++.|.. +...++++|++|+++ |+++.++++...++|..++|.+++++.+..+
T Consensus 97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888999999999988 888999999998764 8889999999999999999999999987644
No 65
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.8e-17 Score=123.93 Aligned_cols=153 Identities=22% Similarity=0.235 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.+.+.+....+.+.........++.+.+.+.+|+|+|++|.+++.++..+...+.+++.|.+.||+|.|++...+.++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 34445566666667777777888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 102 SVAGLLSAFSL---NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 102 ~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.+-++..+++. +++.+++.+++.|++.+...+..+.++++||||++|.+++++. ..++|..+...++-.++..
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 99998888765 4459999999999998877888999999999999999999998 7777776666665555443
No 66
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.74 E-value=1.6e-16 Score=121.82 Aligned_cols=134 Identities=20% Similarity=0.114 Sum_probs=113.9
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL 123 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
......|.+.++.|.++.+.+...+...++..+++++.|++.||+|||+.+..+.....++.+.....++...+.+..++
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444577777889999999999999999999999999999999999999888776666666666666666666777788
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.|++.+.. +...++..|.+|+++|+++.++.+....+|..++|.+++++.+..+
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~ 372 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR 372 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence 88877766 7788899999999999999999999999999999999999988654
No 67
>PTZ00207 hypothetical protein; Provisional
Probab=99.73 E-value=1.8e-16 Score=125.61 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
.++|..+........+.+ ..+.++...+.+.+++|+|.++.+++.++. ......+++.|++.||+|+|+++.++.++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 345554444443333333 334556677889999999999999988773 445567888999999999999999999999
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 030356 102 SVAGLLSAFS------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALAWGNI 173 (179)
Q Consensus 102 ~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~~ 173 (179)
.++.++++++ ++++.+++.|++.|++.+.. +.....+.+++| ++||++.++.....++|+.+ +++..+++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 58899999999999999887 777888899997 78999999999999999975 555555543
No 68
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.73 E-value=2.7e-17 Score=124.02 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=117.0
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (179)
....+..|.+.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.+...++.+.. ..++...+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 345677789999999999999999999999999999999999999999999999988887777766 6778888889999
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+.|++.+.. +.....+.|.+| ++|++++++++....+|..+++.+++.+.+..
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999887 667778888886 68999999999999999999999988887654
No 69
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.73 E-value=1.5e-16 Score=119.99 Aligned_cols=130 Identities=16% Similarity=0.051 Sum_probs=109.9
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY--LSLVTLRGLVG 125 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G 125 (179)
..+.+.++++.++++.+...+...++..+++++.|++.||+|||+.+..+.....++.+...+.++. ..+....++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3445567788898899999999999999999999999999999999998888888887776665532 23445567788
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+.. +..+.++.|.+|+++|+++.++++....+|..++|.+.+.+.+..+
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 359 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG 359 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888777 7778889999999999999999999999999999999999987654
No 70
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.73 E-value=8.6e-17 Score=126.96 Aligned_cols=112 Identities=29% Similarity=0.504 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFL 139 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~ 139 (179)
++.+++.+...++..+++++.|+++|++|||+.++++.+...++.+++++++|...++++|++.|+|.|.. ...+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 140 EFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 140 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
|..|++.||...+..+....+|..++..++...
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999988885544443
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.72 E-value=4.1e-17 Score=125.62 Aligned_cols=140 Identities=17% Similarity=0.090 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----H
Q 030356 37 AEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----S 111 (179)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~ 111 (179)
.............|.+.++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+.+++...... .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE 107 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence 34444455566678888888889999999999999999999999999999999999998887776666554432 4
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
++++.+++.|++.|++.+.. +...+.+.|+.|+++|+++.++.+....+|..++|.+++.+.+..
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~ 173 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG 173 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence 56788888999999988877 778889999999999999999999999999999999999887653
No 72
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.72 E-value=6.6e-16 Score=121.54 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=114.5
Q ss_pred HHHHHHHHHH-HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356 36 VAEAMEIMIL-SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL- 112 (179)
Q Consensus 36 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~- 112 (179)
+.....++.. .....++.+++|.++++.+++.+.+........++.|+++|| +|||+.+..+.++.+++..++++++
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~ 110 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH 110 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444333 344455668899999999888888776666677899999999 5999999999999999988887764
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+...+.+.+++.|++.|.. +...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+..|
T Consensus 111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4556677889999999988 888899999998654 4567888999999999999999999988654
No 73
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.71 E-value=7.5e-16 Score=115.85 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=115.5
Q ss_pred hhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 030356 47 FIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN-YLSLVTLRGLV 124 (179)
Q Consensus 47 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 124 (179)
...|.+.++ +|.++.+.+.+.+...++..++.++.+++.||++||+.+..+....++......+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455666665 8999999999999999999999999999999999999998887777777777766664 77778888999
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
|++.+.. +...+++.|..|+++|++..++++....++..++|.+++++.+..|
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999888 8888999999999999999999999999999999999999988654
No 74
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.71 E-value=7.7e-16 Score=116.56 Aligned_cols=143 Identities=22% Similarity=0.124 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLG-IAMLASVAGLLSAFSL 112 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~-~~~~~~~~~~~~~~~~ 112 (179)
.+..........+..|. +.+++|.|+.+.+++.+.+.+...+.+++.|+++||+||||.++. +.....+..+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555555554 567899999999999999999999999999999999999987654 5555566777788889
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHH--HHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMW--MVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+++.|++.|.+.+.. +....+..|..|+++|++. .+.......+|..++|.+++++.+..+
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~ 153 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG 153 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence 9998888999998877777 7778888898888877754 577888889999999999999887654
No 75
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.71 E-value=8.8e-16 Score=119.70 Aligned_cols=141 Identities=14% Similarity=0.045 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhhh-cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH-H
Q 030356 37 AEAMEIMILSFIG-PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSL-N 113 (179)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-~ 113 (179)
...+.++.....+ .++.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||+++.+.++..++.+++...+ +
T Consensus 20 ~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~ 99 (493)
T PRK15462 20 WEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444344 444566899999999999999999999999999999999 999999999999988887665433 2
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
...+.+...+..++.|.. +...++++|.+|++ +|.++.+++....++|+.++|.+.+++.+..+
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G 166 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS 166 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 223344444555666776 77788999999986 79999999999999999999999999987654
No 76
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.70 E-value=9.4e-16 Score=116.90 Aligned_cols=129 Identities=11% Similarity=-0.091 Sum_probs=117.4
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIG 127 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (179)
..|.+.+|.|.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+....+++.++.+.++...++.|++
T Consensus 227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 44555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356 128 LGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.. +....++.+. |+++|++++++++ ...++|..++|.++|++.+..+
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998 8888899988 9999999999986 5788999999999999998764
No 77
>TIGR00895 2A0115 benzoate transport.
Probab=99.70 E-value=2.6e-15 Score=114.12 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL 115 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 115 (179)
+.............|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+............+....++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
T TIGR00895 260 FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPT 339 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 33444444445556778888999999999999999999999999999999999999544443333333333333345666
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
...+..++.|++.+.. +...+++.|.+|+++|+++.++++....+|..++|.++++++
T Consensus 340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 6777888999998887 888899999999999999999999999999999999998763
No 78
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.69 E-value=2.5e-15 Score=114.63 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=106.6
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL-LSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G 125 (179)
...+++.+++|.++.+.+++.+...++..+++++.|++.||+|||+.+..+.....+... .....++...+.+..++.|
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 334455567899999999999999999999999999999999999998887766533332 2333345555556666777
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
...+.. +....++.|.+|+++|++++++.+....+|..++|++.+++.+..|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE 393 (405)
T ss_pred HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666665 77788899999999999999999999999999999999999997663
No 79
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.68 E-value=3.1e-15 Score=114.43 Aligned_cols=127 Identities=15% Similarity=0.075 Sum_probs=103.3
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 129 (179)
+++.+++|.++.+.+.+.+...++..+++++.|+++||+|||+.+..+.....+........++...+++.+++.+++.+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g 320 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG 320 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556789999999998888888888999999999999999998877766655555445556677777778888888777
Q ss_pred ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.. +....+..|.+|+ +|++++++++....+|..++|.+++.+.+..+
T Consensus 321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66 6667778898885 59999999999999999999999999988643
No 80
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.68 E-value=9.9e-16 Score=116.22 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH-H-HHHHH-
Q 030356 36 VAEAMEIMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG-L-LSAFS- 111 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~-~-~~~~~- 111 (179)
+.............|.+. +++|.++.+.+.......++..++.++.|+++||+|||+.+.....+..+.. . .....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T TIGR00883 229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444445554 6789999999999999999999999999999999999998775554443332 1 22222
Q ss_pred -HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 112 -LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 112 -~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
++...+....++.|++.+.. +...+++.|.+|+++|+++.++ ++....+|..++|.+++++.+..+.
T Consensus 309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 35555666778888888777 8888999999999999999998 5677778999999999999987763
No 81
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.68 E-value=2.7e-15 Score=128.15 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=110.5
Q ss_pred HHhhhcchhcccCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 030356 45 LSFIGPAIKSEWNLSP--AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FSLNYLSLVT 119 (179)
Q Consensus 45 ~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 119 (179)
.....+.+..+++.+. ...+++.+++.++..++++++|+++||+|||++++.+.++.++..++.. ..++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (1146)
T PRK08633 29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA 108 (1146)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 3344455555566544 3468999999999999999999999999999999988876665554433 3567889999
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.|++.|++.+.. +...+++.|++|+++|+++++++..+..+|..++|.+++++.+.
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 88899999999999999999999999999999999999998865
No 82
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.67 E-value=8e-16 Score=121.67 Aligned_cols=120 Identities=28% Similarity=0.345 Sum_probs=110.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-h
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-P 132 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~ 132 (179)
+.++.+.....+..+++.+|..+|++++|.++||+|||++++.+.++..++.+..++++|+..+++.|++.|++.+.. .
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 345667788899999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+...++.|++++++|+.+..+ ......++.++|..++++..
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999 77777777777888887765
No 83
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.9e-15 Score=116.24 Aligned_cols=126 Identities=22% Similarity=0.386 Sum_probs=115.3
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCch
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN--YLSLVTLRGLVGIGLGSG 131 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~ 131 (179)
.+++.+++|.+++.+.++.|+++++.+.|++.||+|.|+++..+.++.++.+++...+.+ ++.+++.|+++|+++|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 357889999999999999999999999999999999999999999999999999887653 456788999999999998
Q ss_pred -hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 132 -PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 132 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
+....+..+|.|+++|++..++...+..+|.+++-++++++.+...+|
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW 194 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW 194 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC
Confidence 999999999999999999999999999999999999999998873334
No 84
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.66 E-value=1.1e-14 Score=109.94 Aligned_cols=135 Identities=14% Similarity=-0.014 Sum_probs=104.9
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (179)
......|.+.++.|.++.+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.+...+.++.... ...+
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 293 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWAL 293 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHH
Confidence 334455666677899999999999999999999999999999999 56667777777777776666555433222 2456
Q ss_pred HHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
+.|++.+.. +...+.+.+..+ +++++...++.+....++..++|.+.+++.++.++|
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 789999887 776666665554 567799999999889999999999999999987754
No 85
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.66 E-value=1.3e-14 Score=114.14 Aligned_cols=133 Identities=17% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH
Q 030356 45 LSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL-S--AFSLNYLSLVTL 120 (179)
Q Consensus 45 ~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 120 (179)
.....|.+ .+++|.+..+..+..+...++..++++..|+++||+|||+++..+.+...+..+. . ..+++...+++.
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 33344544 4668998888888888899999999999999999999999988776644433322 2 223346667778
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
+++.|++.+.. .....++.|.+|++.|+++.+. ++. ..+++.++|.+.+++.+..++
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~-~~~~g~~~p~i~g~l~~~~~~ 407 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNI-SVLVAGLTPTLAAWLVESTQN 407 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 88888877666 6677888899999999999998 555 455677889999988765443
No 86
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.66 E-value=6.5e-15 Score=119.81 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI 142 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~ 142 (179)
.....+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+.. +...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466777899999999999999999999999999999999988888887777777788888877777 88889999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 143 PASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
|+++|++++++.+....+|.+++|++++.+.+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999877653
No 87
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.66 E-value=1.5e-14 Score=107.99 Aligned_cols=135 Identities=30% Similarity=0.304 Sum_probs=120.3
Q ss_pred HHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 43 MILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK-GLLGIAMLASVAGLLSAFSLNYLSLVTL 120 (179)
Q Consensus 43 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (179)
.......|.+.++ +|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.....+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334445555555 4889999999999999999999999999999999999 9999999999999888888888888899
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.++.|++.+.. +....++.|..|+++|++.+++++....+|..++|.+.+.+.+..+
T Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~ 329 (352)
T cd06174 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329 (352)
T ss_pred HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999998 8899999999999999999999999999999999999999987543
No 88
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.65 E-value=1.2e-14 Score=110.05 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=105.6
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 129 (179)
.++.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.+...+......+.++.+.+.+.+++.|++.+
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999998888888888899999999999999999888777666665555666777777778888999888
Q ss_pred ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.. +....+..|..|+ +|++++++++....+|..++|.+++.+.+..+
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77 7777888898875 56799999999999999999999999887654
No 89
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.65 E-value=3.7e-15 Score=113.12 Aligned_cols=137 Identities=19% Similarity=0.286 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhhcchhcccC--CCchhHHHHHHH-----HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356 37 AEAMEIMILSFIGPAIKSEWN--LSPAQETLLTSV-----VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109 (179)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~ 109 (179)
.++++++...+..+.+.+++. .++++.+...+. ..++..+++++.|+++||+|||+++..+.++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777743 445555554433 3333457899999999999999999999999999999888
Q ss_pred HHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 110 FSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 110 ~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
+++++. .+++.|+++|++.+.. +....++.|++|+++|++..++.+.+..+|..+++.++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887764 4778899999999988 888999999999999999999999999999999998876654
No 90
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.65 E-value=4.1e-15 Score=114.72 Aligned_cols=128 Identities=11% Similarity=0.005 Sum_probs=106.4
Q ss_pred cchhcccCCC--------chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 030356 50 PAIKSEWNLS--------PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL----NYLSL 117 (179)
Q Consensus 50 ~~~~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~ 117 (179)
+.+.++.|.+ .++.+...++..++..++.++.|+++||+|+|+++..+.+...+......... +...+
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l 311 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALL 311 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence 4445555543 35679999999999999999999999999999999999998888766665532 23556
Q ss_pred HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356 118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+++.|++.+.. +....++.|.+|+++|++++++.+ ...++|..++|.+++++.+..+
T Consensus 312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 67889999998877 777889999999999999999997 6789999999999999998754
No 91
>PRK03545 putative arabinose transporter; Provisional
Probab=99.65 E-value=7.2e-14 Score=106.79 Aligned_cols=130 Identities=21% Similarity=0.121 Sum_probs=103.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG-LLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 124 (179)
.+..|++.++.|.|+.+.+++.+...++..+++++.|+++||+|||+... +..+..+.. .+....++...+.+..++.
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 44445666668999999999999999999999999999999999887544 433333333 3334556677777888899
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
|++.+.. +.....+.|..| ++|++++++++....+|..++|.+++++.+..+
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g 357 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG 357 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9988776 666777788766 688999999999999999999999999998765
No 92
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.65 E-value=2.3e-14 Score=110.02 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHH-----
Q 030356 37 AEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL-GIAMLASVAGLLSAF----- 110 (179)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~-~~~~~~~~~~~~~~~----- 110 (179)
+............|.+.+++|.++.+.+.+.+...++..++++..|+++||+|||+.+. .+.+...+..+....
T Consensus 233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 312 (402)
T TIGR00897 233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF 312 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33334444455667777889999999999999999999999999999999999988764 333333333322222
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 111 SLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 111 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.++.....+..++.|++.+........+.|.. +++|+++.++++....+|..++|.+++.+.+..|
T Consensus 313 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 313 GHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 13455566778888887776633345566764 5689999999999999999999999999998765
No 93
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.1e-16 Score=115.40 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=115.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhH
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVC 134 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~ 134 (179)
.+.++++.|++.+...+.+.+.+++.|.+.||+|+|.++++++..+...++++++.++++.+++.|.++|+|.+.. +..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 5567789999999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred HHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 135 LSWFLEFIPASN-RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 135 ~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++++.||++. |++++|+...+.++|..++|++++.+-+..|
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G 224 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG 224 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence 999999999865 7999999999999999999999999887654
No 94
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.4e-14 Score=113.00 Aligned_cols=146 Identities=23% Similarity=0.357 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHh-hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSF-IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
.+++..+....+...+.. .+..+.+|.+....+.+.+.+++.++++++.++.+.+.||++-.+.+....+.+.+..++.
T Consensus 49 ~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~ 128 (495)
T KOG2533|consen 49 FLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLT 128 (495)
T ss_pred HHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 333333444444433322 2233557888899999999999999999999999999999998888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
...+|++.+++.|++.|+.++.. |....+++.||.+++|+..++++....++|++++.+++..+.++
T Consensus 129 ~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 129 AAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred HHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 77999999999999999999999 99999999999999999999999999999999999999997653
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.1e-14 Score=108.68 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG 105 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~ 105 (179)
.....+...++..+........+.|.+++.++++..|++.+...++.++.+.+++.|++.+|+|+|+-++.++.++++++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445555567777777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 106 LLSA---FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 106 ~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.++. ...++..+++.-++.|.|.+.. +..+++++...|++.-..-+++.+...++|..++|+++++++..
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 8874 4568888899999999999998 99999999999999999999999999999999999999998863
No 96
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.63 E-value=2.5e-14 Score=110.23 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=112.1
Q ss_pred hhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 48 IGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126 (179)
Q Consensus 48 ~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (179)
..|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+....+++.++..+.++.....+..++.|+
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY 324 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 44555555 89999999999999999999999999999999888888888887777777777777777777778888898
Q ss_pred hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.+.. +...+++.|..|++.|++++++++....+|..++|.+.+++.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 88776 6667888999999999999999999999999999999999998654
No 97
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.62 E-value=3e-14 Score=112.04 Aligned_cols=140 Identities=23% Similarity=0.223 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchhH-HHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRKG-LLGIAMLASVAGLL 107 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~~-~~~~~~~~~~~~~~ 107 (179)
..+..+..........|.+.++.|.|.++.+.. +.....+ ++++++|+++||+ |||+. ++.+.+..+++...
T Consensus 20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~ 97 (491)
T PRK11010 20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 345566666777788888899999999999986 3444444 6899999999999 99986 55667777677666
Q ss_pred HHHH---HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 108 SAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 108 ~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+++. ++++.+.+.+++.+++.+.. +...++..|++|+|+|+++.++...+..+|..+++.++.++.+.
T Consensus 98 ~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 98 MGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6664 46778888899999998887 88899999999999999999999999999999999999998873
No 98
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.62 E-value=1.3e-14 Score=111.94 Aligned_cols=122 Identities=16% Similarity=0.031 Sum_probs=107.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhH
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVC 134 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~ 134 (179)
.+.+..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.++..++..+.++.+.++..+++.|++.+.. +..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999999999999999999999999999999988888888888888888888888899999888776 667
Q ss_pred HHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356 135 LSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 135 ~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..++.|.+|++.|++..+. ++....+|..++|.+.+++.+..|
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7888999999999988766 788899999999999999998654
No 99
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.62 E-value=3.6e-14 Score=110.90 Aligned_cols=144 Identities=17% Similarity=0.088 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH--
Q 030356 31 AGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL-- 107 (179)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~-- 107 (179)
..+..++............| ++.+++|.|..+.++..+...++..++.++.|+++||+|||+.++.......+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~ 342 (467)
T PRK09556 263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV 342 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence 33334444443434444455 455679999999999999999999999999999999999998876654443333222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q 030356 108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNIL 174 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~ 174 (179)
....++.....+..++.|++.... ........|.+|+++|+++.++.+....+ |..++|.+.+++.+
T Consensus 343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 222345555566777788654333 33346677999999999999999988886 77999999999998
No 100
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.62 E-value=3.7e-14 Score=108.86 Aligned_cols=141 Identities=20% Similarity=0.109 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchh-HHHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRK-GLLGIAMLASVAGLL 107 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~-~~~~~~~~~~~~~~~ 107 (179)
.++.++.........+|.+.++.|.|.+|.|++..+... .+..+++|+++||+ |||| .++.+.+..++....
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 356677777788888899999999999999999777765 69999999999999 8876 677777787777777
Q ss_pred HHHH---HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 108 SAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 108 ~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+.+. .+++.+++..++.+...+.. +...+++.|++|+|+|+++.++...+..+|..+++.++..+.+..
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 6665 34666777777778777777 888999999999999999999999999999999999998888753
No 101
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2e-15 Score=114.08 Aligned_cols=150 Identities=19% Similarity=0.397 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc-C-------CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh
Q 030356 21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW-N-------LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK 92 (179)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~ 92 (179)
+++..+.+.+..++++.+.++.+.++...|.+...+ | .+....+.+..+..+|.++|+++.|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 566677888899999999999999998887665442 2 34556789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356 93 GLLGIAMLASVAGLLSAFSL-------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF 164 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 164 (179)
++...++++++++++++++. -..++.+.|++.|+|.|+- |...+..+|....+.||...+......++|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999998766532 2467788999999999998 888899999999999999988865555555544
Q ss_pred HHHHHH
Q 030356 165 EAALAW 170 (179)
Q Consensus 165 ~~~i~~ 170 (179)
|..++.
T Consensus 196 G~ivt~ 201 (538)
T KOG0252|consen 196 GGIVAL 201 (538)
T ss_pred ccHHHH
Confidence 444433
No 102
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.61 E-value=3.1e-15 Score=97.68 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc
Q 030356 68 SVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN 146 (179)
Q Consensus 68 ~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~ 146 (179)
+...++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+.. +....++.|.+|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 4567788899999999999999999999998888888888888888888899999999999887 888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 147 RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 147 r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
|++..++.+....+|..++|.+.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 9999999999999999999999999887543
No 103
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.61 E-value=2.1e-14 Score=113.60 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
.+.........++++.+|+|- .+...|+.+...++..+.+++.|+++|.+|||..++.+.++..++.+.++.++|...+
T Consensus 56 ~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ 134 (599)
T PF06609_consen 56 AYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF 134 (599)
T ss_pred HHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence 344444445667888899984 4778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 118 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 118 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+.+..+.|++.|........++|..|.|.|..+..+...........+|.++..+...
T Consensus 135 iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~ 192 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH 192 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence 9999999999776655566689999999999888877776666666778888766543
No 104
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.61 E-value=4.7e-14 Score=107.57 Aligned_cols=127 Identities=12% Similarity=-0.104 Sum_probs=109.2
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 129 (179)
|.+.+|.|.++.+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44546789999999999999999999999999999999999999999998888888778888888888889999999988
Q ss_pred ch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356 130 SG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.. +....++.+. +++++++..+.++ ....+|..++|.+++.+.|..+
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87 7777777776 6667789999876 6667888999999999998764
No 105
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.61 E-value=3.7e-14 Score=121.33 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCc-hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH---HHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSP-AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI---AMLAS 102 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~---~~~~~ 102 (179)
+...++..+.+.+.......... .+..+.+.+. ...++..+++.+.+.+.+++.|+++||+|||+++... .+...
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~ 96 (1140)
T PRK06814 17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIA 96 (1140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHH
Confidence 33444444444444444333332 3333333333 4578888999999999999999999999999976432 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 103 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+........++++.+++.|+++|++.+.. +...+++.+++|+++|++++++.+.+..+|..++|.+++++.+..+
T Consensus 97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~ 172 (1140)
T PRK06814 97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN 172 (1140)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22222233478999999999999999988 9999999999999999999999999999999999999999987654
No 106
>PRK03699 putative transporter; Provisional
Probab=99.61 E-value=3.2e-14 Score=108.91 Aligned_cols=141 Identities=14% Similarity=0.045 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY 114 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 114 (179)
++............|.+. +++|.|+.+.+.+.+.+.++..+++++.|+++||++||+.+.....+..+...+....++.
T Consensus 215 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK03699 215 LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 333333333444455555 6689999999999999999999999999999999999999888777766666666566666
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..+.+..++.|++.+.. +...+...|..| +++++..+.......+|..++|.+.+++.+..+
T Consensus 295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 295 SHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 66666778888877766 666677777766 456778888888889999999999999988654
No 107
>PRK12382 putative transporter; Provisional
Probab=99.61 E-value=4.6e-14 Score=107.85 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=107.7
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (179)
.+.+.+.++.+.+ +.+.......++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.....+..++.|+
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334444555554 34566677888889999999999999999999998888888888777777777777788899999
Q ss_pred hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.+.. +.....+.|.+|+++|+++.++++....+|..++|.+.+++.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98877 7778888999999999999999999999999999999999988654
No 108
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.60 E-value=1.2e-13 Score=105.65 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHh-hhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSF-IGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLL-GIAMLASVAGLLSAFSL 112 (179)
Q Consensus 36 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~-~~~~~~~~~~~~~~~~~ 112 (179)
+..........+ ..+++.+|+|.|+++.+++.+...+ +..++.+..++ +||+||||.++ .+.+..++...+.++++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 334444333333 4455678899999999999876655 55555555555 99999998754 55565567777777888
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR--GMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.+++.+.+.+...+.. +....+..|+.+++.| +...++.+...++|..++|++++++.+..|
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g 171 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS 171 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 8888766655555444455 7777788888776655 345678889999999999999999987654
No 109
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.60 E-value=7.6e-14 Score=106.87 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=105.0
Q ss_pred HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 030356 41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-NYLSLVT 119 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 119 (179)
.+.......|.+.+++|.++.+.+...+.+.++..++++..|++.||+|||+.+..+..+..++.......+ +....
T Consensus 220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 297 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-- 297 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--
Confidence 333344444555567899999999999999999999999999999999999998888777666665443322 22222
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
..++.|++.+.. +.......+..+ +++|++..++.+....++..++|.+.+++.+..|+
T Consensus 298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~ 358 (393)
T PRK09705 298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN 358 (393)
T ss_pred HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234567877777 766666677775 67899999999999999999999999999998764
No 110
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.60 E-value=4.1e-14 Score=107.17 Aligned_cols=142 Identities=16% Similarity=0.097 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHH------HHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK--GLLG------IAMLASVAG 105 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~--~~~~------~~~~~~~~~ 105 (179)
.+.............|.+ .+++|.++.+.+++.+...++..++.++.|++.||+|||+ .... +.....+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (399)
T TIGR00893 224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM 303 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence 333444444444444544 5568999999999999999999999999999999999996 1111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 106 LLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
......++.........+.+.+.+ . +...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 304 FATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 111112233333333444444444 5 8888999999999999999999999999999999999999998765
No 111
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.60 E-value=2.8e-14 Score=107.69 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=107.4
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchhHH-HHHHHHHHHHHHHHHHH---HH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRKGL-LGIAMLASVAGLLSAFS---LN 113 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~~~-~~~~~~~~~~~~~~~~~---~~ 113 (179)
....+..|.+.+|+|.|.+|.++.... .+...+ .+++|++.||+ ||||.+ +.+.+..++.....++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 344566788999999999999999755 555554 99999999998 899974 56666666666666655 35
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.+....++.+.+.+.. +...+++.|++|+|+|+++.++...+..+|..+++.+++.+.+..+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 555666777788877777 8889999999999999999999999999999999999998887654
No 112
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.59 E-value=1.2e-13 Score=105.77 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHh
Q 030356 63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEF 141 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~ 141 (179)
.+.+.++..++..++.+..|++.||+|||+.+..+.....+..+...+.++.+.+++.+++.|++.+.. +...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 456677778888999999999999999999999888887777777777777777888899999999888 8888888899
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 142 IPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 142 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.|+++|++.+++++....+|..++|.+++++.+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g 375 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG 375 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999987654
No 113
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.59 E-value=6.5e-14 Score=106.75 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=104.0
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (179)
.+.|.+.++.|.++++.+...+...++..+++++.|++.||+|+|+++..+.....++..... + ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 345666677899999999999999999999999999999999999999888777766655433 2 2223345666777
Q ss_pred hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.... +.....+.|..|+++++...+.++...++|..++|.+++++.+.++
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66666 8888888999999888888888889999999999999999988765
No 114
>PRK09952 shikimate transporter; Provisional
Probab=99.59 E-value=2.2e-13 Score=105.75 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=97.6
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---S-LNYLSLVTLRG 122 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 122 (179)
+..+++.+++|.++++...+.....+...++.++.|+++||+|||+.+..+.++..+..+.... . ++...+.+..+
T Consensus 272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T PRK09952 272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM 351 (438)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3334555678888877666666777788889999999999999999988877665554433322 1 22333344556
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+.+++.+.. +...+++.|.+|++.|+++.++ ++.+..+|+.++|.+.+++.+.+
T Consensus 352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777776 7788999999999999999999 55666789999999999998854
No 115
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.58 E-value=6.9e-14 Score=106.70 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHH-HHH
Q 030356 32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA-MLASVAGL-LSA 109 (179)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~-~~~~~~~~-~~~ 109 (179)
.+.++..........++.|.+.+|+|.|..+.+++.+.+.+...++++++|+++||+|||....... ....+..+ ...
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA 89 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778888999999999999999999999999999999999999999854332221 11112222 334
Q ss_pred HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++++.+++.|.+.|.+.+.. +...++..+. +++|++..+......++|..++|++++.+.+..|
T Consensus 90 ~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g 156 (382)
T TIGR00902 90 GAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD 156 (382)
T ss_pred hhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999999888877 7777776654 4788999999999999999999999999998765
No 116
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.58 E-value=3.1e-13 Score=104.29 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=99.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
....|.+.++.|.++.+.+...+...++..+++++.|++.||+|||+.+..+.++..+..+.....++.....+..++.|
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 33456666677889999999999999999999999999999999999988887776665544433222111222223333
Q ss_pred h--hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 I--GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~--~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
. +.... +..+.++.|.+|+++|++++++......+++.++|.+.+++.+..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 3 33333 4566788999999999999999999999999999999999987654
No 117
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.58 E-value=5.3e-14 Score=109.69 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=107.3
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLG--IAMLASVAGLLSAFSLNYLSLVTLR 121 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (179)
..+.|.+.++.|.++.+.+++.++..++..+++++.|+++||. ++|+.... +.+..++..++....++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3344555677899999999999999999999999999999974 34433333 3333344444556677888888899
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.|++.+.. +...+.+.|.+|++++++.+++++....+|..++|.+++++.+..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 9999999888 8888999999999999999999999999999999999999988654
No 118
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=105.35 Aligned_cols=164 Identities=44% Similarity=0.783 Sum_probs=148.4
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh
Q 030356 13 EALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK 92 (179)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~ 92 (179)
+..+..++.+.++...+...+..+...+.....+...|...+.+|.++.|..+++...+.+..+++..+|.++|++|||+
T Consensus 65 ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~ 144 (528)
T KOG0253|consen 65 EAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRK 144 (528)
T ss_pred hhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcch
Confidence 34455678889999999999999888888888888889898999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 93 GLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
......+...+..++...++|+..+.+.|.+.|+|.|+.|...++-.|..|..+|...+-.. ..+.+|.++...++..+
T Consensus 145 ~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 145 GFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred hhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888889999999999887777 99999999999999888
Q ss_pred hccCC
Q 030356 173 ILLNS 177 (179)
Q Consensus 173 ~~~~~ 177 (179)
+...|
T Consensus 224 m~~~g 228 (528)
T KOG0253|consen 224 MSNFG 228 (528)
T ss_pred HHhhh
Confidence 77654
No 119
>PRK15075 citrate-proton symporter; Provisional
Probab=99.57 E-value=1.4e-13 Score=106.71 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=98.6
Q ss_pred HHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH-HHH-H--HHH
Q 030356 39 AMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL-LSA-F--SLN 113 (179)
Q Consensus 39 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~-~~~-~--~~~ 113 (179)
.........+.|.+.+ ++|.++.+.++......++..+++++.|+++||+|||+++..+.....+... ... . .++
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3334444444555554 4899999999999999999999999999999999999988776544332221 111 1 123
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI-SIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
........++.+++.+.. +....+..|.+|+++|+++.++. +.+..+++.++|.+.+++.+..+
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 333333445556666655 55668889999999999999994 55555567889999999998765
No 120
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.1e-14 Score=114.34 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=135.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM 99 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~ 99 (179)
...+-|.+.+..++......-.......+.+.+.++++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+++.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44566766666666666555555666677799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 100 LASVAGLLSAFSLNYLSLVT-LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+..++.++..++++++.+++ ..++.|+|.+.. .+....+..+| +++|+.++++...+.++|.++-|.+..++.+..|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 99999999999999988776 579999999998 66677777555 5899999999999999999999999999998776
No 121
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.56 E-value=5e-13 Score=102.34 Aligned_cols=127 Identities=14% Similarity=0.066 Sum_probs=105.7
Q ss_pred hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030356 49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128 (179)
Q Consensus 49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 128 (179)
.+.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.......++...+++..++.|++.
T Consensus 239 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 316 (399)
T PRK05122 239 ITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGF 316 (399)
T ss_pred HHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhH
Confidence 3444445555 34566677888999999999999999999999998888888888777777777777778889999998
Q ss_pred Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.. +.......|..|+++|+++.++++....+|..++|.+.+++.+..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 366 (399)
T PRK05122 317 SLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG 366 (399)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 877 7777788899999999999999999999999999999999887643
No 122
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.55 E-value=1.4e-13 Score=108.19 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=102.0
Q ss_pred hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 030356 47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--LNYLSLVTLRGL 123 (179)
Q Consensus 47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 123 (179)
.+.|.+. +++|.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..+..+..... .+...+....++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3445555 5889999999999999999999999999999999999999888776665554433322 233334444444
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+...... +..+.++.|.+|+++|++++++++....+|..++|.+++.+.+..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 44433333 6667788999999999999999999999999999999999998764
No 123
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.55 E-value=7.6e-13 Score=103.34 Aligned_cols=136 Identities=20% Similarity=0.232 Sum_probs=117.4
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHH--------HH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR--KGLLGIAMLASVAGLLSAF--------SL 112 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r--~~~~~~~~~~~~~~~~~~~--------~~ 112 (179)
.+......+..+++|.+..+...+..+..+..++|++++|++.||+|.| +++..+...+.+..+.-.+ .+
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~ 378 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK 378 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 3334444556678999999999999999999999999999999999999 8888887777555544333 45
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
+.+.+.+..++.|++.|.. +...++.+|..|+++.+..+|++.......+.++|++.+.+.+.+++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~ 445 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS 445 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6678899999999999998 99999999999999999999999999999999999999999988763
No 124
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.54 E-value=2e-13 Score=104.08 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch----hHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR----KGLLGIAMLASVAGLLSAFS 111 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r----~~~~~~~~~~~~~~~~~~~~ 111 (179)
+..........+.+|.+.+|+|.|.++.+++.+++.++..+++++.|++.||+||| +.+.+..... ........
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA 91 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence 33444456667777888899999999999999999999999999999999999984 3332222211 22223345
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++++.+++.|++.|++.+.. +...++..++ +++|+++.+.......+|..++|.+++++.+..+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78888899999999988877 7777776666 4568888888888889999999999999988654
No 125
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.53 E-value=5.8e-13 Score=103.18 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=84.3
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA--FS--LNYLSLVTLR 121 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~ 121 (179)
.+..+++.+++|.+..+.+...++..++..+++++.|+++||+|||+.+.....+.++...... .. ++....+...
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3333445566899999999989988888899999999999999999988776554433332221 11 1222222222
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIF-WTLGTIFEAALAWGNI 173 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~~ 173 (179)
.+.+...+.. +....+..|.+|+|.|+++.++.+.. ..+.+...|.+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 2222233333 45667889999999999999996544 4444555788777553
No 126
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.53 E-value=5.2e-13 Score=105.31 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=118.8
Q ss_pred hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
..+|.+. +++|.++...|++.+..++|.++++++.+++.+|+++++.+..+.+..++..+.++++++.+...+..++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4456665 458999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.... ....+.+.+..|++.||+.++++++....+..+|.++.|.+.+..|
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 988887 7788899999999999999999999999999999999999988654
No 127
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5e-13 Score=103.50 Aligned_cols=108 Identities=28% Similarity=0.481 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCch-hhHHHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---SLNYLSLVTLRGLVGIGLGSG-PVCLSWFL 139 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~ 139 (179)
+.+.+++.+|.++|++..++++||+|||..+.++.++..++.+++.+ .+++..++++|++.|+..|.. ...+.++.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998888888776655 457888899999999999998 88999999
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 140 EFIPASNRGMWMVVISIFWTLGTIFEAALAWG 171 (179)
Q Consensus 140 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 171 (179)
|..|++.||....+.+.+..+|..++..++.-
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~ 174 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLP 174 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccH
Confidence 99999999999999999999999998666543
No 128
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.53 E-value=8.1e-13 Score=102.24 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=104.6
Q ss_pred Hhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 030356 46 SFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYLSLVTLRGL 123 (179)
Q Consensus 46 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 123 (179)
....+++.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+.+..+..+.+++.+...+. ++...+.+..++
T Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (437)
T TIGR00792 242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIIL 320 (437)
T ss_pred cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 3334555444 44 56677788888899999999999999999999999999988877777666554 355666677788
Q ss_pred HHhhcCch-hhHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 124 VGIGLGSG-PVCLSWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.|++.+.. +...++++|..+ ++++|...++++....+|..+++.+.+++.+..|
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 321 AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88988887 778888888765 5567999999999999999999999999987543
No 129
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.53 E-value=2e-13 Score=105.18 Aligned_cols=148 Identities=16% Similarity=0.069 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHhhhcchhccc--CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH-HHHHHHHHHHHHHHH
Q 030356 32 GLGLVAEAMEIMILSFIGPAIKSEW--NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG-LLGIAMLASVAGLLS 108 (179)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~-~~~~~~~~~~~~~~~ 108 (179)
.+.+++............|.+.+++ +.+..+.+.......++..++.+..|+++||++||+. .........+...+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 327 (412)
T TIGR02332 248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA 327 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555666676664 5678889999999999999999999999999997775 333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
...++.........+.+++.... +.......|.+|+++|+++.++.+....+|+.++|.+.+.+.+..++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 22222222222222223333222 333444567899999999999999999999999999999999887654
No 130
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.52 E-value=2.1e-13 Score=106.75 Aligned_cols=133 Identities=17% Similarity=0.078 Sum_probs=109.5
Q ss_pred HHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--H--HHHHH
Q 030356 42 IMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--S--LNYLS 116 (179)
Q Consensus 42 ~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~--~~~~~ 116 (179)
........|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++...+.+ . .+...
T Consensus 271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (485)
T TIGR00711 271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLA 350 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 3333444555554 48999999999999999999999999999999999999999888888777776652 1 24455
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+....++.|++.+.. +.......+..|+++|+++.++++....+|+.+++.+.+.+.+
T Consensus 351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 351 IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666678899998887 6677777888999999999999999999999999999988875
No 131
>PRK10504 putative transporter; Provisional
Probab=99.52 E-value=2.6e-13 Score=106.08 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---H
Q 030356 37 AEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS---L 112 (179)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~ 112 (179)
+............|++.+ .+|.++.+.++......++..++.++.+++.||+|+|+++..+..+.++...+..+. +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (471)
T PRK10504 272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG 351 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence 333334444555677666 488999999999999999999999999999999999999998888777776655542 2
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+...+.+..++.|++.+.. +.......+..|+++|+.++++++....+|..+++.+++.+.+..
T Consensus 352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333445567778888776 777888899999999999999999999999999999999887654
No 132
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.52 E-value=7.7e-13 Score=101.11 Aligned_cols=129 Identities=12% Similarity=-0.013 Sum_probs=95.0
Q ss_pred hcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHH
Q 030356 49 GPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-S-----LNYLSLVTLR 121 (179)
Q Consensus 49 ~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~ 121 (179)
.+.+.+|.|.++++.+++...... ...++.++.|++.||+|+|+.+..+....+........ . ++........
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 345556789999999999888764 66778999999999999999988776655333222211 1 1222333344
Q ss_pred HHHHhhcCch-hhHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPA-SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.+++.+.. +...+...+..++ +++++.+++.+....+|..++|.+++.+.+..|
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G 368 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG 368 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666 6667777777776 889999999999999999999999999987654
No 133
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.52 E-value=7.1e-13 Score=100.05 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=92.1
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHH-HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----------
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVF-AGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS----------- 111 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------- 111 (179)
......|.+.+++|.++++.+.+..... ++..++.++.|++.||+|||+.+..+.++.++......+.
T Consensus 227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (356)
T TIGR00901 227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITF 306 (356)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 3334445555568999999998887666 6788999999999999999999888888777766554432
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHH
Q 030356 112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWT 159 (179)
Q Consensus 112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 159 (179)
++.+.+....++.+++.+.. +...+++.|.+|+|+||+.+++++...+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34455666778889998888 8899999999999999999999887654
No 134
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.52 E-value=7.8e-13 Score=102.96 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHHHH-HHHHHHHHHHHHH
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLLGI-AMLASVAGLLSAF 110 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~~~-~~~~~~~~~~~~~ 110 (179)
+...+.+.......+.+.+++|.++.+.+++..+..+...+.+|+.|+++| |+||||+++.+ ....++..+++.+
T Consensus 14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555556677889999999999999999999999999999999 59999998875 5555566666666
Q ss_pred HHHHH-----------------HHHHHHHHHHhhcCch-hhHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHHHHH
Q 030356 111 SLNYL-----------------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR--GMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 111 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
+++.. ...++..+..++.... ++..+++.|..|+++| +.+.++.+...++|+.+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 2223333444566666 7788999999998865 67999999999999999999998
Q ss_pred HH
Q 030356 171 GN 172 (179)
Q Consensus 171 ~~ 172 (179)
+.
T Consensus 174 ~~ 175 (477)
T TIGR01301 174 YS 175 (477)
T ss_pred HH
Confidence 75
No 135
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=2.5e-16 Score=122.28 Aligned_cols=140 Identities=28% Similarity=0.532 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhhhcchh--cccCC---------CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 33 LGLVAEAMEIMILSFIGPAIK--SEWNL---------SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---------s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
++.+..+++........+... .+++. ++.+.++..+...+|..+|+++.|.++||+|||+.+..+.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 344566666666555443333 11111 2235689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 102 SVAGLLSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 102 ~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
.++.++..+++ ++..+.++|++.|++.|.. +....++.|..|+++|++..++.+..+.+|..++..++..+
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 9999999999999999998 89999999999999999999999999999988887776554
No 136
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.51 E-value=9.9e-13 Score=100.72 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HH
Q 030356 35 LVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AF 110 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~ 110 (179)
.++.........++.| ++.+++|.|+.+.+++.+...++..+++++.|+++||+|||+.++.+....++..... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 90 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVF 90 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444 4556789999999999999999999999999999999999999987766655443321 11
Q ss_pred HH-----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 111 SL-----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 111 ~~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.+ ......+.+++.|++.+.. +....+..|..+ +++...+.......+|..++|.+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 159 (396)
T TIGR00882 91 GPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI 159 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc
Confidence 11 2334456688888888877 666666666432 334566777777889999999999887654
No 137
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.51 E-value=9.7e-13 Score=102.17 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=102.8
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----H-----
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----L----- 112 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~----- 112 (179)
.......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.+...+. +
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 344556677888889999889999999999999999999999999999999998877777766655421 1
Q ss_pred -HHHHHHHHHHHHHh-hcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 -NYLSLVTLRGLVGI-GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 -~~~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+...+....++.+. +.+..+....++.|.+|+++|++++++.+....+|..++|.+.+++.+..+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~ 447 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG 447 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22222222222222 222225566778999999999999999999999999999999999887543
No 138
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.51 E-value=9.4e-13 Score=99.45 Aligned_cols=128 Identities=20% Similarity=0.063 Sum_probs=93.0
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHH-HHHHH-HHHHHHHHHH--HHHHHHHHHHHHHH
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLL-GIAML-ASVAGLLSAF--SLNYLSLVTLRGLV 124 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~-~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~ 124 (179)
+++.+++|.++.+.+...+...++..++.++.|++.||..+ |+... ..... ..+....... ..+.....+..++.
T Consensus 241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
T TIGR00881 241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL 320 (379)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 44456689999999999999999999999999999998643 33222 21111 1111122221 23444455566677
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
|...... +....+..|.+|+++|+++.++++....+|..++|.+.+.+.+..|
T Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 7655444 5566788999999999999999999999999999999999998765
No 139
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.51 E-value=1.2e-12 Score=100.17 Aligned_cols=121 Identities=16% Similarity=0.073 Sum_probs=102.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHH
Q 030356 57 NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCL 135 (179)
Q Consensus 57 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~ 135 (179)
+.+..+.+...++..+...++.+..|++.||+|+|+.+.++..+.++........++.+.+++..++.|++.... ....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888999999999999999999999999999999988888887777677778777888889999887655 5556
Q ss_pred HHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356 136 SWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 136 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+..+..|++.+++..+. ++....+|..++|.+++++.+..|
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 677888888888887777 788999999999999999998654
No 140
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.51 E-value=9.1e-13 Score=103.81 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=107.8
Q ss_pred hhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 030356 47 FIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS---LNYLSLVTLRG 122 (179)
Q Consensus 47 ~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 122 (179)
++.|. +++.+|.|+.+.+.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+... ++.+......+
T Consensus 280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (495)
T PRK14995 280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA 359 (495)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34444 445589999999999999999999999999999999999999888888877776655432 34455566788
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+.|++.+.. +.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus 360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999887 7788888899999999999999999999999999999998865
No 141
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.50 E-value=1.1e-11 Score=95.09 Aligned_cols=130 Identities=14% Similarity=0.076 Sum_probs=101.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML-ASVAGLLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
.+..|.+.+++|.++++.+.......++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++.
T Consensus 237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 315 (394)
T PRK10213 237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW 315 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34457777788999999999999999999999999999999965 4444444333 333334444556667777788899
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
|++.+.. +...+.+.+..| +++++..+.+.....+|..+||.+++++.+..+
T Consensus 316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9998887 777888888887 567788888888889999999999999998654
No 142
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.50 E-value=7.9e-13 Score=104.30 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=112.7
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----LNYLSLV 118 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 118 (179)
+.....+.+..+..-|+...+++.....+...+.+++.|.++||++||++++.+-++.++.....++. .+.+.++
T Consensus 28 ~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll 107 (524)
T PF05977_consen 28 MQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLL 107 (524)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 33333444555556688899999999999999999999999999999999999988776655444332 2667888
Q ss_pred HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 119 TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+..++.|++.+.. |...+.+.|..|+++...++++.+...++...+||.++|.++...|
T Consensus 108 ~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G 167 (524)
T PF05977_consen 108 ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG 167 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8999999999998 9999999999999999999999999999999999999999886543
No 143
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.3e-12 Score=97.25 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-NYLS 116 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~ 116 (179)
....+..+.|..|.+.+..|+|++..+++...+.++..+|+++.|++.|| +.|+.+.....+.++..+.+.+.+ +...
T Consensus 224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~ 302 (394)
T COG2814 224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPAL 302 (394)
T ss_pred HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34444566777799999999999999999999999999999999999999 989988888777777776665544 4455
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..+..++.|+..... ........+ .-+|.+..+.+++....++|..+|..+++.+.++.+
T Consensus 303 ~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 303 ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666777777665 555556666 446999999999999999999999999999998754
No 144
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.49 E-value=1.5e-12 Score=100.48 Aligned_cols=138 Identities=20% Similarity=0.063 Sum_probs=90.6
Q ss_pred HHHHHHHHH-HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HH
Q 030356 36 VAEAMEIMI-LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FS 111 (179)
Q Consensus 36 ~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~ 111 (179)
++....... .+....++.+++|.|+.+.+++.+...++..+++++.|+++||+|||++++++....++...... ..
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 99 (420)
T PRK09528 20 FFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333 34444555666999999999999999999999999999999999999999876655544432211 11
Q ss_pred H-----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 112 L-----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 112 ~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+ ......+.+++.|.+.... +....+. +.. .++++..++.......+|..++|++++.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 167 (420)
T PRK09528 100 PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence 1 1111222334444433333 3333333 222 24567778888888899999999999988764
No 145
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.49 E-value=2.8e-12 Score=95.37 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhc---ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKS---EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
...+..++............+.+.+ ++|.++++.+...+.+..+..++++..+++.||+|+|+.+..+..+.+++.+
T Consensus 144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444445544334333333344433 3689999999999999999999999999999999999998888877777765
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+....++... ...-++.|++.+.. |...+...+.+|++ .+++.++. ....+|+.+.|.+.+.+.|..+
T Consensus 224 l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g 292 (310)
T TIGR01272 224 GAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG 292 (310)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc
Confidence 5554443322 23455788888888 88888888888754 45666665 5566899999999999988654
No 146
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.48 E-value=9.4e-12 Score=94.97 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=95.1
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-SLNYLSLVTLRGLVG 125 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G 125 (179)
+..|++.+.+|.++.+.++..+...++..+++++.|++.||+|+|+.+..+..+.+++.+.... .++.....+..++.+
T Consensus 221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3446666668999999999999999999999999999999999999998888777777655443 444455555556666
Q ss_pred hhcCch-hhHH-HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 IGLGSG-PVCL-SWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~~~g~~-~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.... ++.. ....+..|++.++.+. .+....+|..++|.+++++.+.++
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~ 352 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL 352 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc
Confidence 655444 4333 3344444555566543 467788999999999999998644
No 147
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.48 E-value=1.1e-12 Score=98.20 Aligned_cols=126 Identities=29% Similarity=0.363 Sum_probs=103.9
Q ss_pred HHHHHHhhhcch-hcccCCC-chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---HHHHH
Q 030356 41 EIMILSFIGPAI-KSEWNLS-PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---SLNYL 115 (179)
Q Consensus 41 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~~~~~ 115 (179)
.........|.+ .+++|.+ ..+.+...++..+...+++++.|++.||+++|+..........+..+.... .++..
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333345555654 7778999 789999999999999999999999999999988877777666666654433 33556
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA 166 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 166 (179)
..+...++.|++.+.. +....++.|..|+++|+++.++.+....+|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6677888899988888 88999999999999999999999999999999987
No 148
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.47 E-value=5.6e-12 Score=96.83 Aligned_cols=128 Identities=20% Similarity=0.143 Sum_probs=101.2
Q ss_pred hcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 030356 49 GPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-----NYLSLVTLRG 122 (179)
Q Consensus 49 ~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 122 (179)
.|.+ .+++|.++.+.++......++..++.++.|+++||+++|+.+..+.....++.......+ +...+.+..+
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 3444 566899999999988888889999999999999999999999888877776666655432 4555667778
Q ss_pred HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.|++.+.. +........ .++++|++..+.++....++..+++.+++++.+..+
T Consensus 318 ~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 888888776 555444433 345899999999999999999999999999877654
No 149
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.46 E-value=2.1e-12 Score=99.23 Aligned_cols=130 Identities=18% Similarity=0.094 Sum_probs=104.2
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-NYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
...|.+.++.+.++.+.+++.+...++........+++.| |++.++.+..+..+.+++..++...++...+.+..++.+
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456666665557788898888888777766666666665 466666777777777777777777787777767777888
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
++.+.. +...+++.|..|+++|++++++++....+|..++|.+++++.+..
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 887777 778899999999999999999999999999999999999998864
No 150
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=98.24 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
..+++.-....++.. ........+-..++|++..|...+.....+..++++++.|+|.||+|.|+++..+.++..+.++
T Consensus 255 ~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 255 VLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence 333443333444432 2333333445568999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
...+...-..+.+..++.|...|.. ..+-++..+..|+++-++.+|+|+.....++.++|.+.+.+.+.+++
T Consensus 334 ~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 334 YLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 6666665666777889999999998 88999999999999999999999999999999999999999987764
No 151
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.45 E-value=5.5e-12 Score=108.04 Aligned_cols=128 Identities=16% Similarity=0.015 Sum_probs=110.8
Q ss_pred HhhhcchhcccCCCch-hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPA-QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
..+.+++.+++|.+.. +.+++.+...++.++++++.|++.||+++++.+.++.++.+++.++..+.++...+++..++.
T Consensus 253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344555667899998 999999999999999999999999999999999888888888887777777888888888999
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
|++.+.. +...+++.+..|+++|++++++.+....+|..+++.+++.+.
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 778899999999999999999999999999888887777654
No 152
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.45 E-value=9.5e-12 Score=96.52 Aligned_cols=136 Identities=13% Similarity=-0.023 Sum_probs=90.8
Q ss_pred HHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHH-HHHHHHHHHHHHHHH--HHHHHH
Q 030356 42 IMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGL-LGIAMLASVAGLLSA--FSLNYL 115 (179)
Q Consensus 42 ~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~-~~~~~~~~~~~~~~~--~~~~~~ 115 (179)
........|.+. +++|.+..+.+...+.+.++..++.++.|+++||+ ++|+.. ....+...+...... ...+..
T Consensus 259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK11663 259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYV 338 (434)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHH
Confidence 333334444444 67899999999999999999999999999999998 333332 221111111111111 122233
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
......+..|++.... ........|.+|+++|++++++.+....+|..++|.+.+++.+..+
T Consensus 339 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g 401 (434)
T PRK11663 339 MQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH 401 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence 3333344455443322 3334567899999999999999999999999999999999998755
No 153
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.6e-12 Score=101.05 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASV 103 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~ 103 (179)
+.+....+...+....+......+|.+.++.+.++.+++.+.++.++...++++..|+++|+.. ++.+..++.+..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 4455666666777777788888889999999999999999999999999999999999999988 45566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
....+++.+++..+.....+.|++.|.. ......+.|..+.++-..+.|+.....+++..++|++++++.|.+++
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~ 453 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN 453 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence 8888899999999999999999999988 66667889999999999999999999999999999999999888765
No 154
>PRK09848 glucuronide transporter; Provisional
Probab=99.43 E-value=6e-12 Score=97.96 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=103.8
Q ss_pred HHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 030356 43 MILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NYLSLVT 119 (179)
Q Consensus 43 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 119 (179)
.......|++.++ +|.++...++......++..++.++++++.||+|+|+.+..+.++.+++.+.+.+.+ +.+.+.+
T Consensus 245 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 324 (448)
T PRK09848 245 FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALV 324 (448)
T ss_pred HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3334445655554 776666555555555777889999999999999999999999888887777666543 5566666
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIPAS-------NRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
..++.|++.+.. +...+...|..|.+ ++|...++++....+|..+++.+.+.+.+..
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 778889998888 77888888887654 4599999999999999999999999887653
No 155
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.43 E-value=1.8e-11 Score=93.00 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=91.8
Q ss_pred hhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 030356 48 IGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----LNYLSLVTLR 121 (179)
Q Consensus 48 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 121 (179)
..|.+ .+++|.++.+.+.+.+...++..+++++.|++.||+|+|+.+..+..+..++.+++... ++...+....
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM 307 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 33444 45789999999999999999999999999999999999999888877777666555443 2334445566
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHH
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALA 169 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~ 169 (179)
++.|++.+.. +.......|..| ++|+++.++++..... |...+|.++
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888777 777777788876 6799999997766654 555555544
No 156
>PRK10054 putative transporter; Provisional
Probab=99.43 E-value=5.1e-12 Score=96.90 Aligned_cols=123 Identities=12% Similarity=0.001 Sum_probs=101.6
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCch-
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYLSLVTLRGLVGIGLGSG- 131 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~- 131 (179)
++.+.++...+.+.+...+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.+.+..++.|++.+..
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888999999999999999998888877777666654 56666677788999998776
Q ss_pred hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 132 PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.....+.+..|++.|+++.+..+ ...+|..++|.+++.+.|+.+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 777888999999999999988765 556899999999999998765
No 157
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.43 E-value=1e-11 Score=96.82 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=89.4
Q ss_pred HHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHH-HHHHHHHHHHHHHHH--HHHHHHHH
Q 030356 45 LSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLL-GIAMLASVAGLLSAF--SLNYLSLV 118 (179)
Q Consensus 45 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ 118 (179)
...+.|.+. ++.|.+..+.+....++.++..++.++.|+++||+ +||+... ....+..++.+.... .++.....
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM 351 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 334445554 55789999999999999999999999999999999 5554322 222222333222222 22333334
Q ss_pred HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Q 030356 119 TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALAWGNILLNS 177 (179)
Q Consensus 119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~~~~~~ 177 (179)
+..++.|.+.... .....+..|.+|+++|++++++.+....+|+.+ +|.+.+++.+..+
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 4445555543333 334456789999999999999998888887654 7999999988754
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.43 E-value=1.3e-11 Score=97.54 Aligned_cols=133 Identities=17% Similarity=0.029 Sum_probs=90.1
Q ss_pred HHHHhhhcchhcccCCCchhHHH------------HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETL------------LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF 110 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~ 110 (179)
+......|.+.++.|.+..+.+. ...+..++..++.++.+++.||+|||+.++.+..+.+++..+...
T Consensus 305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 33344457777777776542211 233445566778899999999999999998888777766655543
Q ss_pred HH----HHHHHHHHHHHHHhh-cCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 111 SL----NYLSLVTLRGLVGIG-LGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 111 ~~----~~~~~~~~~~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.. +...+....+...+. .+..+....+..|.+|++.|+++.++.+....++++++|.+.+++.+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 22 111111111122221 222255667789999999999999999999999999999999988874
No 159
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.42 E-value=7e-13 Score=101.59 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=114.1
Q ss_pred HhhhcchhcccC----CCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 030356 46 SFIGPAIKSEWN----LSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL--NYLSLV 118 (179)
Q Consensus 46 ~~~~~~~~~~~~----~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 118 (179)
..+.-++..+++ +|++++.-+.+.+..-.-+...+.||++|| +|+|+.++.+.++++++.+..+.++ +...++
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~ 121 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY 121 (498)
T ss_pred HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 333344444444 999999888888888888899999999999 8999999999999999999998874 677888
Q ss_pred HHHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 119 TLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++..++++|.|.. +...++++|.+|+++ |-.+++++..+.++|+.++|++.+++.+..+
T Consensus 122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 9999999999999 999999999998744 6788899999999999999999999988765
No 160
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.42 E-value=3.3e-12 Score=98.88 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356 35 LVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL- 112 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~- 112 (179)
.++............+++.++ ++.+ +..+.+.....++..++.+++++++||+|+|+.+..+..+.+++.++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence 344444444445455666655 4433 6778888899999999999999999999999999999999999998887775
Q ss_pred -HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 -NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPA-------SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 -~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+.+.+++..++.|++.+.. ....++++|..+. ++.|...+.++....++..+++.+.+.+.+..|
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999998 7788888887763 445999999999999999999999998886543
No 161
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.41 E-value=9.5e-12 Score=95.40 Aligned_cols=140 Identities=14% Similarity=0.004 Sum_probs=114.0
Q ss_pred HHHHHHHHHhhhcchhcccC-CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWN-LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYL 115 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~ 115 (179)
..........+.+.+.+|.| .+.+..+.+.++..++.++.-...+++..|+|.|+++.++.+..++=..+++.. ++.+
T Consensus 219 ~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~ 298 (400)
T PF03825_consen 219 IGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 33333433444455566766 777788888889999999999999999999999999999999999999888877 4433
Q ss_pred HHH----HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHhccCC
Q 030356 116 SLV----TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISI-FWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 116 ~~~----~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~~~ 177 (179)
... ....+.|+..+.. .....++.+..|++.|++++++++. ..++|..++..++|++.+..+
T Consensus 299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 332 2345799999998 8899999999999999999999765 678999999999999998765
No 162
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.41 E-value=1.7e-11 Score=96.58 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=99.2
Q ss_pred HhhhcchhcccCCCchhHHHHHH-HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HHH-HHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTS-VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AFS-LNYLSLVTL 120 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ 120 (179)
....|++.+++|.|+++.++... ...++..++.++.|+++||+|+|+.+.++.++.++....+ ... ++...+...
T Consensus 243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33446666778999999999874 6668999999999999999999988776665544443322 222 244344444
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.++..++.+.. +...+...+..+++.+++..++.+....+|..+++.+.+++.+..|
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555555555 6667888999999999999999999999999999889999988654
No 163
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.41 E-value=2.7e-11 Score=94.85 Aligned_cols=129 Identities=15% Similarity=0.057 Sum_probs=97.9
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HH--HHHHH
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NY--LSLVT 119 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ 119 (179)
...++.|.+.++.|.+..+..+......+...++.++.+++.||+|||+.++.+.++.+++.+.+.... +. .....
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344556788888898888888888888899999999999999999999999999988888877665432 11 12222
Q ss_pred HHHHHHhhcCc-h-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 120 LRGLVGIGLGS-G-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 120 ~~~l~G~~~g~-~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
..++.+.+.+. . +....++.|.+|+++|++++++.+....+|.++++.+...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444433 3 66789999999999999999999999999888886655443
No 164
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.41 E-value=9.4e-12 Score=96.16 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=96.0
Q ss_pred HHHHHHHHHH-HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHH
Q 030356 36 VAEAMEIMIL-SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 36 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
++.+..+... +++.+++.+++|++.+|.|++.+...++..++++++|+++||+|| |+++.++.+...+......+.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444 555567778899999999999999999999999999999999965 77888888887777777778888
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHH--------HhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFL--------EFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
++.+++.+++.|++.+.. +...+... |......|.+..+ .+|..++|.+++.+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l 153 (418)
T TIGR00889 92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL 153 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence 888889999999987766 55444321 2222223444444 35677777777766
No 165
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.40 E-value=5.2e-12 Score=97.48 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcc--cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSE--WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIA 98 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~ 98 (179)
+.+|+.+.+..+..++......+...-.-.+.++ .+.+.+-.|++.+...++.+++++..|+.+.|.+. |++++.+.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 4556766777667777776666555444445555 55567778999999999999999999999999997 88999999
Q ss_pred HHHHHHHHHH-HHH---H-HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 99 MLASVAGLLS-AFS---L-NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 99 ~~~~~~~~~~-~~~---~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
++.+++.++. +.. + ..+.++++|++.|+|.+.....-.++++....++|.++++....+..+|..+||.+...+.
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 9999999887 332 2 5678899999999999888889999999988999999999999999999999999887766
Q ss_pred cc
Q 030356 174 LL 175 (179)
Q Consensus 174 ~~ 175 (179)
..
T Consensus 190 ~L 191 (488)
T KOG2325|consen 190 PL 191 (488)
T ss_pred hh
Confidence 43
No 166
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.40 E-value=8.6e-12 Score=92.27 Aligned_cols=140 Identities=17% Similarity=0.103 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
--.......+.++.+.+|+|+|.+.++.++++..++..+.+++..++++|+|.++.+..++++.+++..+-... +...+
T Consensus 24 LR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L 102 (395)
T COG2807 24 LRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLL 102 (395)
T ss_pred cchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHH
Confidence 33445566788899999999999999999999999999999999999999999999999999999998877655 56778
Q ss_pred HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
+.+-.+.|.+.+.. ...++.+.+.|| |+.+..+++|....++++.+++.++-.+.++.++|
T Consensus 103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW 164 (395)
T COG2807 103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGW 164 (395)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccH
Confidence 88899999999988 788999999998 67799999999999999999999998888776555
No 167
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.37 E-value=7.4e-12 Score=96.88 Aligned_cols=129 Identities=17% Similarity=0.003 Sum_probs=102.0
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchh-HHHHHHHHHHHHHHHHHHHHH------H
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRK-GLLGIAMLASVAGLLSAFSLN------Y 114 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~-~~~~~~~~~~~~~~~~~~~~~------~ 114 (179)
.+..+++.+++|+++.+.+.+.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 455577778899999999999999999999999999999997 67755 466677777777776665442 3
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
..+++.+++.+++.+.. .+..++..|.. ++++|++..++.+....+|..+++.+.+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~ 161 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS 161 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888777 67778888876 56899999999998888888877776665553
No 168
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.36 E-value=9.8e-11 Score=89.81 Aligned_cols=123 Identities=16% Similarity=0.001 Sum_probs=99.7
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 129 (179)
++..+.+|.++.+.+++.+...++..++++..+++.||.++|+.+..+.. .++..+...+.++.+...+..++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 34445689999999999999999999999999999999999988877753 34444445566677666777788999888
Q ss_pred ch-hhHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 130 SG-PVCLSWFLEFIPASN-RGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
.. ++..+.+.|..|+|. +|++.++.+....++..++..+.+.+.
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 87 777778888766654 799999999999999999998888664
No 169
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.36 E-value=3.8e-11 Score=89.08 Aligned_cols=124 Identities=24% Similarity=0.179 Sum_probs=93.3
Q ss_pred chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356 51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS 130 (179)
Q Consensus 51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 130 (179)
.+.+++|.++.|++.+....+....+..++.|.++||+|||+..++-+++.++.++. -..+++..++++|++.|++...
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHH
Confidence 344689999999999999999999999999999999999999999999998888864 4567899999999999999988
Q ss_pred h-hhHHHHH-HHh----ccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 030356 131 G-PVCLSWF-LEF----IPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 131 ~-~~~~~~~-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~ 175 (179)
. .+--++. .|+ +|++..+.-++... ...++-.+.+.+++.++.+.
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 7 6666654 555 33333343333333 23334445555666666554
No 170
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.4e-12 Score=94.85 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=102.2
Q ss_pred HHHHhhh-cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-------HHH
Q 030356 43 MILSFIG-PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-------LNY 114 (179)
Q Consensus 43 ~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-------~~~ 114 (179)
...+... -++.++|++++.+++.......+...+.++..|+++||+|.+|++......++++....... ++.
T Consensus 235 vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 314 (417)
T COG2223 235 VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF 314 (417)
T ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence 3334444 45566799999999999999999999999999999999999999999988888888776654 233
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
.......+..++..|.. .....++...+| ++-|...++.....++|+..-|..-+...+.+++
T Consensus 315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~ 378 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS 378 (417)
T ss_pred HHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence 33333334444444443 445556666666 4788899999999999999989998888887663
No 171
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.35 E-value=2.5e-11 Score=104.12 Aligned_cols=127 Identities=14% Similarity=-0.009 Sum_probs=104.3
Q ss_pred hhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---------------
Q 030356 48 IGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--------------- 111 (179)
Q Consensus 48 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--------------- 111 (179)
..|.+ .+.+|.++.+.+++.+.+.++.++++++.|+++|+.++++.+..+.++.++..+.+.+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 34444 45589999999999999999999999999999998887776666655555544433332
Q ss_pred -----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 112 -----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 112 -----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++.+.+.+..++.|++.+.. +...+++.+..|++.||++++++++...+|..+++++.+.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888899998887 7889999999999999999999999999999999999988864
No 172
>PRK10133 L-fucose transporter; Provisional
Probab=99.35 E-value=3.3e-11 Score=93.67 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=99.4
Q ss_pred hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
+..+++. +++|.++.+.++....+.++..+++++.+++.||+|+|+++..+.++.++...+..+.++. .......+.|
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g 358 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCS 358 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 3334443 4589999999999999999999999999999999999999888877766666555554443 2345567889
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+.. |...+...|.+|+ +.+.+.++... ..+|+.++|.+.+.+.+..|
T Consensus 359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhcc
Confidence 999998 8899999988875 46677777654 44678888888888887654
No 173
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.35 E-value=1.1e-10 Score=90.61 Aligned_cols=135 Identities=12% Similarity=-0.001 Sum_probs=90.1
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH-HH-----HHHHH
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA-FS-----LNYLS 116 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~-----~~~~~ 116 (179)
...+...|++.++ +.+.........+..+...+.+++.|+++||+|+|+++..+.....+...... .. .+...
T Consensus 269 vg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~ 347 (462)
T PRK15034 269 IGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA 347 (462)
T ss_pred HHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 3334444555444 22333333334456778889999999999999999999988877666654322 22 23455
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhccc---------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPA---------------------SNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+.+..+...++.|.. .....++.+.+|+ ++-|...|+......+|+.+-|.+-+...+
T Consensus 348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~ 427 (462)
T PRK15034 348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN 427 (462)
T ss_pred HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 555544544555555 5666677777774 156788899999999999999988887777
Q ss_pred cCCC
Q 030356 175 LNSK 178 (179)
Q Consensus 175 ~~~~ 178 (179)
.+|+
T Consensus 428 ~~g~ 431 (462)
T PRK15034 428 MTGS 431 (462)
T ss_pred HcCC
Confidence 6554
No 174
>TIGR00898 2A0119 cation transport protein.
Probab=99.34 E-value=3.3e-11 Score=95.04 Aligned_cols=117 Identities=21% Similarity=0.126 Sum_probs=89.6
Q ss_pred chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc
Q 030356 51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY--LSLVTLRGLVGIGL 128 (179)
Q Consensus 51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~ 128 (179)
...++++.+.. .......+....+.++.+++.||+|||+.+..+.++.+++.+...+.++. ....+..++.+++.
T Consensus 348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI 424 (505)
T ss_pred ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 33444444432 33345567777889999999999999999999988888887777665533 33444455566666
Q ss_pred Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
+.. +..+.+..|.+|++.|++++++.+....+|+.++|.+.+
T Consensus 425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 665 777888999999999999999999999999999999987
No 175
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.34 E-value=9.1e-11 Score=92.04 Aligned_cols=137 Identities=14% Similarity=-0.020 Sum_probs=102.1
Q ss_pred HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----HHHHH
Q 030356 41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----SLNYL 115 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~ 115 (179)
.........+++.+...-+++..+.+.+...++.+++.+++++++||+|+|+.+..+..+.+++.+.... .++.+
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL 325 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence 3344444455666554335666777777778899999999999999999999998887766655544332 23455
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++..++.|++.+.. ....+++.|..+ +++.|..++.......+|..+++.+.+++.+..|
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6666778888888887 777888888855 3334668899999999999999999999887543
No 176
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.33 E-value=1.8e-10 Score=87.52 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=82.4
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHH
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FS-LNYLSLVTLRGLVG 125 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~G 125 (179)
+.+.+++|.++.+.+++.+...++..+++++.|++.||+|||+.+..+.....+..+... .. .+.+...+...+.+
T Consensus 219 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T PRK11102 219 FVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFV 298 (377)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345566899999999999999999999999999999999999998888765444332221 11 23333333333334
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHH-HHHHHHHHHHHHHH
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISI-FWTLGTIFEAALAW 170 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~ 170 (179)
.+.+.. ......+.|..| ++|+++.++.+. ...+|..++++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 299 GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334333 445556677766 889999999654 45567777776654
No 177
>PRK09669 putative symporter YagG; Provisional
Probab=99.32 E-value=1.1e-10 Score=90.90 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=95.3
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--SLNYLSLVTLRGLVG 125 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G 125 (179)
..+++.++.--+++..+.+.....+...++.+++++++||+|+|+.+..+.+..++..+...+ .++.+.+++..++.|
T Consensus 251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 330 (444)
T PRK09669 251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN 330 (444)
T ss_pred hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 334444443223344455666677888899999999999999999998887665544332222 346666777788999
Q ss_pred hhcCch-hhHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 126 IGLGSG-PVCLSWFLEFIPA-------SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
++.+.. +...++++|..+. +..|...+.++....+|..+++.+++.+.+..|
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988 8888899888752 334677889999999999999999999887543
No 178
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.31 E-value=1.9e-10 Score=87.95 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=79.5
Q ss_pred chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356 51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS 130 (179)
Q Consensus 51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 130 (179)
.+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.........+.+.+.+.
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466899999999999999999999999999999999999999999888888777776665544434444444444333
Q ss_pred hhhHHHHHHHhccccch-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 131 GPVCLSWFLEFIPASNR-GMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 131 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
. .......+..|.++| +.+.+++ .++..+++.+++++.+
T Consensus 309 ~-~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 309 G-FGVAMSQALGPFSLRAGVASSTL----GIAQVCGSSLWIWLAA 348 (392)
T ss_pred H-hHHHHHHHhccCcccccHHHHHH----HHHHHHHHHHHHHHHH
Confidence 2 112233455565555 4444444 4455555555555544
No 179
>PRK11043 putative transporter; Provisional
Probab=99.31 E-value=1.8e-10 Score=88.37 Aligned_cols=128 Identities=17% Similarity=0.132 Sum_probs=95.1
Q ss_pred hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHH
Q 030356 47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AF--SLNYLSLVTLR 121 (179)
Q Consensus 47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~ 121 (179)
...|.+.+++|.++.+.++......++..++.+..+++.||+|+|+.+.......++..+.. .. .++...+.+..
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34466677789999999998888889999999999999999999987665554444443322 11 23444455556
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.+.|++.+.. +.......|..| ++|+++.++++.....+...++.+.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6777777776 666666667765 6899999999988888888888888887653
No 180
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.31 E-value=1.5e-10 Score=88.01 Aligned_cols=135 Identities=20% Similarity=0.130 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch---hHHHH-HHHHHHHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR---KGLLG-IAMLASVAGLLSAF 110 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r---~~~~~-~~~~~~~~~~~~~~ 110 (179)
.++.....+......|.+.++.|.+.+ .+...++..+...++ .++++||..|| +.... ..+..++......+
T Consensus 201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~ 276 (368)
T TIGR00903 201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF 276 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556666677777754 566665555555555 46777776543 33332 33333443334444
Q ss_pred HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 111 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 111 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
..+.....+...+.+++.... +...++.+|.+|++.|+++.++.+....+|+..+|.+.+.+.
T Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 277 ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 433333344455566666665 667789999999999999999999999999999998888766
No 181
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.31 E-value=1.3e-10 Score=90.34 Aligned_cols=131 Identities=13% Similarity=0.028 Sum_probs=86.9
Q ss_pred hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH---HHHHHHHHH--HHHHHHHHH
Q 030356 47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS---VAGLLSAFS--LNYLSLVTL 120 (179)
Q Consensus 47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~ 120 (179)
...|.+. ++.|.++.+.++......++..+++++.|+++||+++++....+..... ++....... .+.......
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC 351 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 3445554 4578999999999999999999999999999999975432222322211 111111111 122333334
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhccCC
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT-IFEAALAWGNILLNS 177 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~ 177 (179)
.++.|.+.... ........|.+|+++|+++.++.+....+|+ .++|.+.+.+.+..+
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 45555543333 3334567899999999999999988877764 689999999988654
No 182
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.28 E-value=3.1e-10 Score=87.18 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred hcchhcccCCCchhHHHHHHHHH-HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHH
Q 030356 49 GPAIKSEWNLSPAQETLLTSVVF-AGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AFS-LNYLSLVTLRGL 123 (179)
Q Consensus 49 ~~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l 123 (179)
.+.+.+++|.++++.+++..... .+..++.++.|++.||+|+|+.+..+.....+..+.. +.. ++.+.+.+..++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35566778999999999886654 5688999999999999999998877766655554332 333 344444444433
Q ss_pred ----HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 124 ----VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 124 ----~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.|++.+.. .....++.+.+|.+ ..++++...+++..+++.+++.+.+..|
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444 44445555555544 4555666667777766778888887665
No 183
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.8e-10 Score=87.15 Aligned_cols=151 Identities=21% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356 23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS 102 (179)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~ 102 (179)
.++.....+.+...-+.-....+.++...+.++.|++..++.+.+........+..+...++.||+|||+.++.+..+..
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA 346 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 33443444444444444444556666778888899999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH---HHHH------HHHHHHHHHHh--hcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 103 VAGLLSAFS---LNYL------SLVTLRGLVGI--GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWG 171 (179)
Q Consensus 103 ~~~~~~~~~---~~~~------~~~~~~~l~G~--~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 171 (179)
+..+++... .+.. ..++..++..+ +.|..|..+-+.+|.+|++.|..++++-.....+..++-...--.
T Consensus 347 ~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~ 426 (485)
T KOG0569|consen 347 VALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP 426 (485)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766532 1111 11233333333 444347778888999999999999999877777776665444443
Q ss_pred Hh
Q 030356 172 NI 173 (179)
Q Consensus 172 ~~ 173 (179)
+.
T Consensus 427 l~ 428 (485)
T KOG0569|consen 427 LQ 428 (485)
T ss_pred HH
Confidence 33
No 184
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.27 E-value=2.5e-10 Score=87.11 Aligned_cols=123 Identities=12% Similarity=0.010 Sum_probs=108.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hh
Q 030356 55 EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PV 133 (179)
Q Consensus 55 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~ 133 (179)
+-+.+....|.+.++..+..++...+..++.+|+|.|+.++++..++++=...++++++.+.+.+.+.+.|+-.+.. ..
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33445566899999999999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred HHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356 134 CLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 134 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..-++++.+|+|..++...+ ++.+.++|..+.+.++|.+-|+.|
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence 89999999999999999988 689999999999999999887643
No 185
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.27 E-value=4.4e-11 Score=90.40 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHH
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--SL--NYLSLVTLRGLVG 125 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G 125 (179)
.++.+++|.++.+.+.+.++..+...+++++.|+++||+|+|+.+..+......+..+..+ .+ +.....+...+.+
T Consensus 250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
T TIGR00886 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF 329 (366)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 4444568999999999999999999999999999999999998887776665555544433 22 4444444445555
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHH
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLG 161 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 161 (179)
++.|.. ....+.+.+..| +++|+..|+.+....+|
T Consensus 330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555555 556677778776 69999999988776654
No 186
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.25 E-value=4.7e-10 Score=83.22 Aligned_cols=150 Identities=17% Similarity=0.032 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHH
Q 030356 29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLL 107 (179)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~ 107 (179)
.-+.+.+-.+...++.....+|.+..|.|+|+.+.|++.+...+.....++....+.+| ..+|+..+...+.+.++.+.
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 33344455667777777778899999999999999999999999999999999999996 55666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356 108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS-NRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN 179 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 179 (179)
+.+.+.-..+. ..++.|++.|.. +.....+.+..++. +-++-.++.+....+=..++|.+.|++-|.+|+|
T Consensus 291 ~~~~P~~~~~l-w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 291 LLLAPGQLPIL-WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHhhhhHHHH-HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 77766432222 258999999998 88888888776654 4466666677777777788999999999999987
No 187
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.1e-10 Score=84.32 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=102.7
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA-GLLSAFSLNYLSLVTLRGLVGIGL 128 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~~ 128 (179)
-.+.+.+|+|+.+++.+.+....-.++.+++.|.++||+|++...+.+..+..+. -....+ +...=+....+.|+.+
T Consensus 289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsy 366 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSY 366 (459)
T ss_pred HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhH
Confidence 4456779999999999999999999999999999999999998877765544333 222222 1222245667788888
Q ss_pred Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356 129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK 178 (179)
Q Consensus 129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 178 (179)
... -..++.++...|+++.|++.+..+...++|-.+.|++++.+.+..|+
T Consensus 367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 877 55788999999999999999999999999999999999999988763
No 188
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.22 E-value=1.4e-09 Score=83.26 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=90.7
Q ss_pred chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhh
Q 030356 51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS-VAGLLSAF--SLNYLSLVTLRGLVGIG 127 (179)
Q Consensus 51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~G~~ 127 (179)
.+.+.+|.++.+.+++.....++..++.++.+++.||++++........... +....... ..+.+.+....++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3344489999999999999999999999999999999984333322222211 11111111 12445566677888888
Q ss_pred cCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 128 LGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.+.. +...++..|.+| ++++...++.+....+|..+++.+++.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 8887 888888888887 6789999999999999999999998877543
No 189
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.21 E-value=1.4e-09 Score=83.26 Aligned_cols=150 Identities=13% Similarity=-0.091 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHH--HHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHH-HH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLL--TSVVFAGLLVGSYSWGF-ISDNYGRRKGLLGIAMLA-SV 103 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~i~~~~~g~-l~d~~G~r~~~~~~~~~~-~~ 103 (179)
.+.+...++.++.......+..|.+.+|.|.|.++.|.+ .+...+...+.+|+++. ..||+||||..++...+. .+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 345555678888888888899999999999999999997 46678888889999855 799999999875554332 21
Q ss_pred HHHHHH---HHHH-HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 104 AGLLSA---FSLN-YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 104 ~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
...... ...+ ...++...++..+..+.. +..-.+..|..++++++...+....+..+|..+++...+++.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g 161 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG 161 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222222 1222 223333444444555555 6667788888888888988888888889999999988888776654
No 190
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.20 E-value=1.6e-10 Score=90.54 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGIAML 100 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~~~~ 100 (179)
....++...++..+..........+.+.+++|+|.++.+...+...+...+-.+ +|.++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 344445545667777744445555667778999999999999999999999555 999999997 77777777666
Q ss_pred HH-HHHHHHHHHHHHHHHH-HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q 030356 101 AS-VAGLLSAFSLNYLSLV-TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV---ISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 101 ~~-~~~~~~~~~~~~~~~~-~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.. +....++..++..... +..++.+++.+.. ...-++..|..+ |++....+. ......+|..+++.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 3333333334433333 4778888988888 888999999998 555443333 333445899999999999887
Q ss_pred cCC
Q 030356 175 LNS 177 (179)
Q Consensus 175 ~~~ 177 (179)
..+
T Consensus 184 ~~~ 186 (468)
T TIGR00788 184 KTL 186 (468)
T ss_pred hcC
Confidence 654
No 191
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.19 E-value=1.1e-10 Score=91.59 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=80.9
Q ss_pred hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK-------GLLGIAMLASVAGLLSAFSLNYLSLVTLR 121 (179)
Q Consensus 49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (179)
.+++.+++|.++.+.+.+.++..++..+++++.|+++||++||+ .......+.++..++....++.....+..
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 355 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVM 355 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 34455668999999999999999999999999999999998762 22233333333333334444544444444
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
++.+++.+.. +...++..+.. +++|+...++.+....+|+.++|.+..
T Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 356 ILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH
Confidence 5555554433 44444455554 478999999988877777777776643
No 192
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.18 E-value=1.1e-09 Score=84.58 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=93.2
Q ss_pred hhhcchhccc--CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIKSEW--NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 47 ~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
.+.+.+.++. +.+....+...+.+..+..+++++.+++.||+++|+++.+......+..++....++... .....+.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3344444443 444445566677777888999999999999999999998888888888777777665433 4556677
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
|++.+.. |...+...+..+++.+.....+.. . .+|+.+.|++.+++.|..
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHh
Confidence 8888777 888899999988666543444333 2 299999999999999853
No 193
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.17 E-value=6.8e-10 Score=79.58 Aligned_cols=131 Identities=21% Similarity=0.133 Sum_probs=105.2
Q ss_pred HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-------HH
Q 030356 41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-------LN 113 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-------~~ 113 (179)
..+.++.+-|.+++.+|+|.+|...+.+...+|..+| ++.|.+.|++|.+.++.++.....++...+..+ ++
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 4455677779999999999999999999999999875 888999999999999999999999988766542 35
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
++.+.+..++.|.+.+.. ........+.|| ++||++.++.-...++++.+-..+-..+.
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 667777777777776655 566666678898 68999999999999988877655544443
No 194
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.15 E-value=5e-10 Score=87.62 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHH--------HHHHH
Q 030356 29 IYAGLGLVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGL--------LGIAM 99 (179)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~--------~~~~~ 99 (179)
....+..+.............|.+ .+++|.+..+.++..++..++..++.++.|+++||+++|+.. ..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 343 (465)
T TIGR00894 264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG 343 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 344444444444444444455554 556899999999999999999999999999999998755321 11111
Q ss_pred HHHHHHHH--HHH-HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 100 LASVAGLL--SAF-SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 100 ~~~~~~~~--~~~-~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
........ ... ..+.....+...+.+.+.+.. +.......|..| +.+|...++.+....+|+.++|.+.+++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 344 GLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 11111111 111 122333333444445554444 434444556665 5899999999999999999999999988765
Q ss_pred C
Q 030356 176 N 176 (179)
Q Consensus 176 ~ 176 (179)
.
T Consensus 423 ~ 423 (465)
T TIGR00894 423 D 423 (465)
T ss_pred C
Confidence 3
No 195
>PRK09669 putative symporter YagG; Provisional
Probab=99.14 E-value=7.2e-10 Score=86.30 Aligned_cols=129 Identities=15% Similarity=0.031 Sum_probs=96.0
Q ss_pred HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHH-HHHHHHHHHHHHHHHHH------H
Q 030356 45 LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLL-GIAMLASVAGLLSAFSL------N 113 (179)
Q Consensus 45 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~-~~~~~~~~~~~~~~~~~------~ 113 (179)
..+...++.+++|+++.+.+.+.++.-+..++..|+.|+++|| +||||..+ .+.+..++...+....+ .
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 3455567778899999999999999999999999999999999 77766544 56566666655444333 2
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
...+++...+.+.+.... .+..++..|+. ++++|.+..+.......+|..+++.+...+.
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~ 170 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV 170 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667666666 66778889987 5588999888888888888877776555444
No 196
>PRK11462 putative transporter; Provisional
Probab=99.13 E-value=5.3e-09 Score=81.91 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=80.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCch-hhHH
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NYLSLVTLRGLVGIGLGSG-PVCL 135 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~ 135 (179)
+++..+.+...+.++.+++.+++++++||+|+|+.+..+.....+..++..+.+ +...+++..++.|++.+.. +...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888899999999999999999999987755544444333332322 2223444556677776665 5556
Q ss_pred HHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 136 SWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 136 ~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+++.|..+ .+..|...+.+....-+|..+++.+++.+.+..
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67766655 233356567778889999999999999888653
No 197
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.13 E-value=2.2e-08 Score=75.75 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=110.0
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-NYGRRKGLLGIAMLASVAGLLSAFS---LNYLSLVTLRGL 123 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 123 (179)
+.|+-.+-+|++..|...++.....|..++....|++.. |.+.++.-..++...+++..+...+ .+.+.+...-++
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l 310 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL 310 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 346667779999999999999999999999999998877 6778887778887777776655443 466788888999
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.|++.|.. ....+...+..++++.|..+|.+..+..++..++-.+++.+.|.
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 77788889999999999999999999999999999999998874
No 198
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=99.13 E-value=5.3e-09 Score=76.04 Aligned_cols=136 Identities=32% Similarity=0.375 Sum_probs=107.7
Q ss_pred HHHHHHHhhhcchhcccCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HH
Q 030356 40 MEIMILSFIGPAIKSEWNLSP--AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN--YL 115 (179)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~--~~ 115 (179)
..........+.+..+++.+. .+.++..+...++..++.++.|.+.||+|||+.+..+.....++.+...+..+ ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 444444555566666666555 58899999999999999999999999999998888777655555555555554 78
Q ss_pred HHHHHHHHHHhhcCch-hhHHHHHHHhccc-cchhHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Q 030356 116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPA-SNRGMWMVVISI-FWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~ 175 (179)
.+.+.|++.|++.+.. +....++.|.+|+ ++|+...+.... ...+|..++|.+++.+...
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999877 8889999999998 788999999877 6888888888777776543
No 199
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1e-09 Score=82.97 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHH-HHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLGI-AMLA 101 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~~-~~~~ 101 (179)
+.+..++++.+..+..++.+.-..|.+ .|+.|.|..++++..+.+=++.+.|.+++|+++||+ |||.+..+. .+..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 445566667777777777666555554 556899999999999999999999999999999994 677665444 3334
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 030356 102 SVAGLLSAFSL--NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILLNS 177 (179)
Q Consensus 102 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~ 177 (179)
.++.+....++ |+....+..+.+|+...+. ........|..|++.-|++.|+...+..+ |...+....+++.|.+|
T Consensus 332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 44444455554 4577777888888877665 66677789999999999999999888877 88888888888877644
No 200
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.2e-08 Score=78.98 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL 112 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~ 112 (179)
..++.............++.+. +|.++.+..+.......+.+++.+++.++.+|+|+|+++..+.++.+++.+..-+.+
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444445555555666554 676777788888888888889999999999999999999999999999998887765
Q ss_pred --HHHHHHHHHHHHHhhcCch-hhHHHHHHHhc------cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 113 --NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI------PA-SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 113 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~------~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+...+++..++.+++.+.. +...++++|.. .. +.-|...+.+....-+|..++..+.+++....|
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6777888889999999888 77777776543 22 223778888999999999999988888887654
No 201
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.04 E-value=3.5e-09 Score=79.68 Aligned_cols=147 Identities=15% Similarity=0.053 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
...-.++.+++.........+++.+.+| .|.++.+.....+.+..+..+|+.+..++..|+...|.+....+...+.++
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444445666766677777777777666 888999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..++.++.. -+...++.|+..+.+ |...+...+..| ++... .|..-....+|+.+.|.+-+++.|+.+
T Consensus 318 ~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 318 AVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred HHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHHHHHHHHHHhhh
Confidence 888888844 344567889999998 999999999998 44333 344445556788889999999999865
No 202
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.04 E-value=5.7e-09 Score=81.98 Aligned_cols=127 Identities=16% Similarity=0.034 Sum_probs=92.8
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchh-HHHHHHHHHHHHHHHHHHHH------HH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRK-GLLGIAMLASVAGLLSAFSL------NY 114 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~-~~~~~~~~~~~~~~~~~~~~------~~ 114 (179)
.++..++.+.+|+++.+.|.+..+.-+-.++..|+.|.++| |+|||| .++.+.+..+++..++...+ .+
T Consensus 27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~ 106 (473)
T PRK10429 27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY 106 (473)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence 34445666678999999999999999999999999999999 569855 45556666666655543322 13
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
..+.+..++.+++.... .+..++..|+. ++++|.+..+.-.....+|+.+.+.+...+
T Consensus 107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777 77888999988 589999998886777777766665554443
No 203
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=99.00 E-value=1.2e-07 Score=63.23 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=96.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHH
Q 030356 58 LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLS 136 (179)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~ 136 (179)
.++...-.-.++......+++++.+.+.+++|.|+.++++.+...+..... +-++.+.++....+.|++.+.. .....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344445556677777788899999999999999999999999887665554 4556778889999999999998 77788
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 137 WFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 137 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
++.+...++.|++..+++......+.++|.++...+.+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~ 151 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG 151 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988888988888887776554
No 204
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.00 E-value=3e-09 Score=79.44 Aligned_cols=97 Identities=22% Similarity=0.230 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHhhcCchhhHHHHHHHhcccc
Q 030356 70 VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NY--LSLVTLRGLVGIGLGSGPVCLSWFLEFIPAS 145 (179)
Q Consensus 70 ~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 145 (179)
..+...-|.++.+++.||+|||+.+..+.++.+++.++...+. |. .+++..|++...+. .+.+.|..|++|.+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f---qvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF---QVAYVYTPEVYPTA 466 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh---eEEEEecCcccchh
Confidence 3455667889999999999999999999999998888766543 32 22334555543222 66788899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 030356 146 NRGMWMVVISIFWTLGTIFEAALA 169 (179)
Q Consensus 146 ~r~~~~~~~~~~~~~g~~~~~~i~ 169 (179)
.|+++.|.-.....+|+++.|+++
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH
Confidence 999999999999999999999998
No 205
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.99 E-value=5.7e-09 Score=61.95 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
.++.++.+.+.+|.+.+|.++|.++.+++.+...+|+.+|++...++.++..+++.+..+.+...+....+++.++....
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46678888999999999999999999999999999999999999999999888999999999999999999988776543
No 206
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.96 E-value=2.8e-08 Score=76.44 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-RRKGLLGIAMLASVAGLLSAFSLN 113 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-~r~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
++.++.......+..+.+.++.|+|..|+|.+.++..+..+++.+++|.++||.+ +|+.+.+..++.++........++
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555566666677888889999999999999999999999999999999986 566776777777776666667778
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP 143 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~ 143 (179)
++.++...++..+..... +...+...+...
T Consensus 91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 887777777778777666 766676666654
No 207
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.95 E-value=9.7e-08 Score=75.17 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhcc-ccchhHH--HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Q 030356 63 ETLLTSVVFAGLLVGSYSWGF----ISDN-YGRRKGL--LGIAMLASVAGLLSAF---------SLNYLSLVTLRGLVGI 126 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~----l~d~-~G~r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~ 126 (179)
.+++.++..+...+.+++..+ +.|| .+.+... .++.++.+++....++ ..+.+++....++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 678888888888888887554 4554 3333433 6777777777766654 3478888999999999
Q ss_pred hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
|.... |...+++.+..|++.||++++++.....+|..+++.+.....+.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 99999999999999999999999999999999998888876544
No 208
>PRK11462 putative transporter; Provisional
Probab=98.91 E-value=4.1e-08 Score=76.97 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=99.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHH-HHHHHHHHHHHHHHHHHH------H
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLL-GIAMLASVAGLLSAFSLN------Y 114 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~-~~~~~~~~~~~~~~~~~~------~ 114 (179)
.++..++.+..|+++..+|.+..+.-+-.++.-|+.|.++|| +||||+.+ .+.+..++..+++...++ .
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 344556667789999999999999999999999999999996 78877665 455666666665544332 3
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
..+.+.-.+..++.... .+..++..|+.+ +|+|.+..++...+..+|..+++.+...+.+
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~ 171 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN 171 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777 778889999877 6999999999999999988888777665554
No 209
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.91 E-value=4.7e-09 Score=81.38 Aligned_cols=131 Identities=21% Similarity=0.124 Sum_probs=103.7
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHH-HHHHHHHHHHHHHHHH-H-------
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLL-GIAMLASVAGLLSAFS-L------- 112 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~-~~~~~~~~~~~~~~~~-~------- 112 (179)
.+..+++.+..|+++...+.+..+.-+-.++..|+.|.++| |+||||..+ .+....+++.+++... +
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 45557777778999999999999999999999999999999 899887655 5667777777666644 3
Q ss_pred HHHHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
....+.+..++..++.... .+..++..|..+ +++|.+..+.-+....+|..+...+...+.+..
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~ 167 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF 167 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 2233456666678888887 778899999988 478999999999888888877777777666543
No 210
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.85 E-value=7.4e-07 Score=70.67 Aligned_cols=108 Identities=16% Similarity=0.042 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhhccccchhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhcC
Q 030356 63 ETLLTSVVFAGLLVGSYSW----GFISDNYGRRKGLLGIAMLASVAGLLSAFSLN---------YLSLVTLRGLVGIGLG 129 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~----g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g 129 (179)
.+++.++..+...+..++. +++.||++.++.+.++.++.+++.+.+....+ .+++....++.|++..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666777776666666665 67777777778888999999999888776655 3567888999999999
Q ss_pred ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
.. |...+++.+..|++.||+.+|++.....+|..++..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 999999999999999999999998888777777766654
No 211
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.85 E-value=9.8e-09 Score=80.57 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=105.2
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF----------SLNYLSLVTLRGL 123 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l 123 (179)
+.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++...... .++...+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 468999999999999999999999999999999999999999999888887754321 0232334455677
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+++.+.. .+...++.+..|++++++..++++...++|..+++.+++.+.+..|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888777 7789999999999999999999999999999999999999988654
No 212
>PRK09848 glucuronide transporter; Provisional
Probab=98.83 E-value=1.4e-07 Score=73.59 Aligned_cols=125 Identities=10% Similarity=-0.060 Sum_probs=82.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc----cchhHH-HHHHHHHHHHHHHHH-HH------HH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY----GRRKGL-LGIAMLASVAGLLSA-FS------LN 113 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----G~r~~~-~~~~~~~~~~~~~~~-~~------~~ 113 (179)
.++.+++.++.|+++.+.|.+.++..+..++..++.|+++||. ||||.. ..+.+...+...+.. .. ..
T Consensus 29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 3444666777899999999999999999999999999999996 777755 444444443333321 11 12
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHH-----HHHHHHHHHHH
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWT-----LGTIFEAALAW 170 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~i~~ 170 (179)
....+....+.+++.+.. ++..++..|..+ +++|.+..+....+.. ++..++|.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344456677777776 666677776654 4678887776554433 34445555554
No 213
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=75.45 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=115.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM 99 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~ 99 (179)
..++||..+...++..+.+...+-.++....+..+.|+ +.+.+.|...++.+.+....+..-|+.||+|-|....++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 34566777777666666666555555555455555677 77888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------HHH--HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 100 LASVAGLLSAFSL------NYL--SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 100 ~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
+.+++..+-..+. .+. ....+..+.+..+-.. ....-....|||+++|..+..+-..+..+|..++.++.-
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9999987654432 223 4455666666666555 333445567999999999999988888888887777766
Q ss_pred HHhcc
Q 030356 171 GNILL 175 (179)
Q Consensus 171 ~~~~~ 175 (179)
.++..
T Consensus 198 ilV~~ 202 (480)
T KOG2563|consen 198 ILVPS 202 (480)
T ss_pred eecCC
Confidence 66544
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.81 E-value=7.6e-08 Score=73.68 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH--HHHHHH-HHH
Q 030356 36 VAEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS--VAGLLS-AFS 111 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~--~~~~~~-~~~ 111 (179)
+.......+..++.+.+.+ +.|+|.+|.|.+.++..+...+.+|+.|.++||+|.||-++....... .+.+.. .+.
T Consensus 17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~ 96 (412)
T PF01306_consen 17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG 96 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566665 489999999999999999999999999999999997776554432222 222221 222
Q ss_pred H----HHH-HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 112 L----NYL-SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 112 ~----~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
| |.. ..+++.+..|+..... +..-+++.+.. ++.+.-.|-.-...++|.+++..++|.+.+
T Consensus 97 pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~ 163 (412)
T PF01306_consen 97 PLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN 163 (412)
T ss_dssp HHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence 2 221 2222333334444443 44444443332 222333344456667777777777777654
No 215
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.81 E-value=6e-08 Score=56.98 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
++..........++.|.+.++.|+++.|.|.+.++..+...++.+++|.++||+++++.++.....
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344445555566677778888999999999999999999999999999999999999988766544
No 216
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.78 E-value=5.1e-07 Score=71.38 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhH-------HHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHH
Q 030356 63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKG-------LLGIAMLASVAGLLSA-----FS-----LNYLSLVTLRGLVG 125 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G 125 (179)
..++.+...+...+.+++.+++.||+++|+. +.++.++.+++.+..+ +. .+.+.+...-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 4566666777788899999999999999973 6677777666654321 11 24566777889999
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
+|.+.. ++..+.+.+..|++.++.+++++++..++|+.++..++...
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 88899999999999999999999999999999998887655
No 217
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.76 E-value=2.1e-06 Score=66.50 Aligned_cols=132 Identities=13% Similarity=0.070 Sum_probs=83.9
Q ss_pred HHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 030356 43 MILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----SLNYLS 116 (179)
Q Consensus 43 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~ 116 (179)
.......|.+.+ .+|.++.+.++.......+..++..+.+++.+|..+++.+.....+..++..+... .+++..
T Consensus 235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~ 314 (413)
T PRK15403 235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW 314 (413)
T ss_pred HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 344445565554 46999999999988888888898888888765544444432222222222222211 223333
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.++..++.++|.+.. +...... ..-.+..+|++.++++.....+...++..++++.+.
T Consensus 315 ~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 315 SVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777778887776 5555322 122233579999999988888888888888887655
No 218
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.75 E-value=1.9e-08 Score=78.21 Aligned_cols=140 Identities=11% Similarity=-0.036 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL 117 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (179)
.+.....+..++-...+|++-.+.-.|.....-..+-+..-++.+++.+|+|+-+++..++...++-.+...+..|.|..
T Consensus 383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~v 462 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMV 462 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhe
Confidence 33334444444444567788777777888888888889999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Q 030356 118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI-SIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+...+++|+..+.. ....++++...||+.|.++.++. ....++|-.+|.+|++.+.+.++
T Consensus 463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 99999999999999 88999999999999999999995 57778899999999999887764
No 219
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.67 E-value=7.9e-07 Score=72.32 Aligned_cols=127 Identities=14% Similarity=0.083 Sum_probs=103.9
Q ss_pred hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 030356 48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL--------NYLSLV 118 (179)
Q Consensus 48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 118 (179)
+..++.+.+|.+++++..+...+....-+...+.|+++|+ +|+++.+..+.++..++..+.++.. .....+
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l 89 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL 89 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence 3345556688999999888888888888999999999996 9999999999999999888776642 123355
Q ss_pred HHHHHHHhhcCch-hhHHHHHHHhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 119 TLRGLVGIGLGSG-PVCLSWFLEFIPAS---NRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++-.+..+|.|+. +...+...|.++++ +|-+.+.++..+.++|+.+++.+..++.+
T Consensus 90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999 99999999998754 36778888899999999999998888764
No 220
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.64 E-value=1.4e-06 Score=69.37 Aligned_cols=140 Identities=19% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV 103 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~ 103 (179)
+++....+.+..+-+........++.+.+.++.+.+... .+...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~ 371 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI 371 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence 334444455555555555555666667777777766443 6666677777778888889999999999999999999999
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356 104 AGLLSAFSLNY--------------LSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF 164 (179)
Q Consensus 104 ~~~~~~~~~~~--------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 164 (179)
+.++++..... .......++..+..+..+....+.+|.+|.+.|+++.++-.....+...+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~ 446 (513)
T KOG0254|consen 372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFL 446 (513)
T ss_pred HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHH
Confidence 88877643211 11222233333344433666678899999999999999965555554443
No 221
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.5e-08 Score=76.22 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=95.6
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356 53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS 130 (179)
Q Consensus 53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 130 (179)
.|++..+.-+.|...-...+.+.+++.+.|.++||++ |-..-..+.+..........+++++..+.+-++..+++.+.
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~ 377 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGL 377 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHH
Confidence 3446644448898888899999999999999999999 43333444555555556677899999999888888888877
Q ss_pred h-hhHHHHHHHhcccc------chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 131 G-PVCLSWFLEFIPAS------NRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 131 ~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
. ........+....+ .-|...++...++.+|..+||.+++.+.+..|
T Consensus 378 ~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG 431 (464)
T KOG3764|consen 378 ADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG 431 (464)
T ss_pred HHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence 6 65555555544332 45788899999999999999999999988755
No 222
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.1e-09 Score=79.16 Aligned_cols=147 Identities=20% Similarity=0.131 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVA 104 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~ 104 (179)
..+...++.-+..++.+........+...+.+++.++..++.+++...+.+-+.+.|++.|| +|.|..-++-+....++
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 33334444445566666667777778888888898999999999999999999999999997 77776655555555666
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 105 GLLSA---FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 105 ~~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
-++++ ..+.++.+..+|++.|+|.-.. ...+.++..||..|+.+.++|+......+|+.+--.+..++
T Consensus 124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 66554 3678899999999999987766 67788999999999999999999988888876544444443
No 223
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.60 E-value=7.8e-06 Score=64.29 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIAMLASVAGLLSAFSLN---------------------YLSLVTLR 121 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 121 (179)
.+....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 345555666666788888999999995 77778887777777766654432 25667778
Q ss_pred HHHHhhcCch-hhHHHHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPA--SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.+.|+..+.. ..-++++++..++ +..|..+|++|.+..+.+++..+..+.+.+..|
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899999888 8889999999995 455999999999999999999988888666554
No 224
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.59 E-value=7.2e-09 Score=82.38 Aligned_cols=147 Identities=17% Similarity=0.142 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~ 109 (179)
.+++..+.+..........++.+.+.|+++.++.|++.+.+-++..+..++..++.+|.+|-|.+-.+.++.+++.++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 33444455555556666777889999999999999999999999999999999999999999999999999998887665
Q ss_pred HH----H----------------------------------------------HHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356 110 FS----L----------------------------------------------NYLSLVTLRGLVGIGLGSG-PVCLSWF 138 (179)
Q Consensus 110 ~~----~----------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~ 138 (179)
+- + -+..++++.++.|+|.... +...+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 30 0 0134567889999999988 9999999
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 139 LEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 139 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
-|..++++-+...|++.....+|..+|.++++.+.+.+
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~y 204 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIY 204 (539)
T ss_dssp --------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999999888654
No 225
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.56 E-value=4e-07 Score=71.26 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc---------hhHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR---------RKGLL 95 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~---------r~~~~ 95 (179)
..+..+.+..+.............|.+.+| +|.+..+.|++.++..+...+..++.|.++||.-+ |..-.
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 345566666677666666666666766665 99999999999999999999999999999998865 22233
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 96 GIAMLASVAGLLSAFSLN-YLSLVTLRGLVGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
++....+++.+.+++.++ .....+..+....+..+. .....-..+. .+++-+..+++.+....+.+.++|.+.+.+
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 444555555555555542 111111112222222222 2222222333 568889999999999999999999999998
Q ss_pred hc
Q 030356 173 IL 174 (179)
Q Consensus 173 ~~ 174 (179)
.+
T Consensus 417 ~~ 418 (466)
T KOG2532|consen 417 VT 418 (466)
T ss_pred eC
Confidence 85
No 226
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.53 E-value=1.7e-06 Score=67.72 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hhHHHHHHHhcccc
Q 030356 69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG---PVCLSWFLEFIPAS 145 (179)
Q Consensus 69 ~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~---~~~~~~~~~~~~~~ 145 (179)
...+...+.++..|.++||+|||..+........+..+...+.. ++.+. +.++..+.. ....+++++....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44778889999999999999999999999888888777776665 33222 455544332 55678899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 146 NRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 146 ~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+|....++.+.....+..++|.+++.+.+..+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~ 176 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG 176 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999887643
No 227
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.51 E-value=3e-06 Score=65.89 Aligned_cols=132 Identities=18% Similarity=0.092 Sum_probs=104.4
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHH-HHHHHHHHHHHHHHHHHH------HH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGL-LGIAMLASVAGLLSAFSL------NY 114 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~-~~~~~~~~~~~~~~~~~~------~~ 114 (179)
.+++-++.+..|+++..+|.+..+.=+--++.-|+.|.+.|| +||||+. +.+.+..++...++..++ +.
T Consensus 33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 344455566699999999999999999999999999999995 7877665 455577777777776655 23
Q ss_pred HHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
...++.-.+.++++... .+..++..|+.+ +++|.+..+.-+....+|..+...+...+++..+
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566778889999888 778888888865 5899999999999999998888777777665543
No 228
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.48 E-value=7.7e-06 Score=62.25 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHH-HHHHHHHHHHHHHH-----H--------H
Q 030356 53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGI-AMLASVAGLLSAFS-----L--------N 113 (179)
Q Consensus 53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~-~~~~~~~~~~~~~~-----~--------~ 113 (179)
..|++++..-.+.+.++..+... .++.+|+.+|+.+ ||..+++. ......+..+..++ . .
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 45778887777777777666554 6899999999999 88776654 44444444433321 1 1
Q ss_pred H---HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 114 Y---LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 114 ~---~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+ ........+.|++.+.. +...+.+.|..|+|+|+++.++.....-+|.+++..+.+.+.+.+
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1 23344567888888888 888999999999999999999999999999999999999888754
No 229
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.45 E-value=4.8e-06 Score=65.17 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=108.4
Q ss_pred chhcccCCCchhHHHHHHHHHHHHHHHHHHHh-hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356 51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWG-FISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129 (179)
Q Consensus 51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 129 (179)
+....++.++.+.+...+.......+++.+.. .+...+|-|+.+..++..-.+...+.+++.+.+.++....+..+...
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 34456899999999888888888888888777 77888999999999999999999999999999998888887777665
Q ss_pred chhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 130 SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 130 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
..+...+.++....++++|+.+++......+..+++|.+-+.+..
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 558889999999999999999999999999999999988877654
No 230
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.43 E-value=3.7e-07 Score=69.94 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHHHHH-HHHHHHHH
Q 030356 32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLLGIA-MLASVAGL 106 (179)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~~~~-~~~~~~~~ 106 (179)
....+..-+.+..-..+.|++.++.|++..-.+.+-.+.-+...+.+|+.|..+| |+||||.++... +...++.+
T Consensus 38 ~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~ 117 (498)
T KOG0637|consen 38 ASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF 117 (498)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHh
Confidence 3333444445555556667777889999988888888888888999999999999 499999887664 44455556
Q ss_pred HHHHHHHH-----------------HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhH-HHHHHHHHHHHHHHHHHH
Q 030356 107 LSAFSLNY-----------------LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGM-WMVVISIFWTLGTIFEAA 167 (179)
Q Consensus 107 ~~~~~~~~-----------------~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~ 167 (179)
++.+++++ ..+++...+.-+..... .++-+++.|....+++.+ +++.+....++|+.++..
T Consensus 118 Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~ 197 (498)
T KOG0637|consen 118 LIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYA 197 (498)
T ss_pred hhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence 66665533 23334444445555555 778899999988877777 999999999999999887
Q ss_pred HHHH
Q 030356 168 LAWG 171 (179)
Q Consensus 168 i~~~ 171 (179)
++.+
T Consensus 198 ~g~y 201 (498)
T KOG0637|consen 198 LGSY 201 (498)
T ss_pred cccc
Confidence 7753
No 231
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.39 E-value=7.3e-06 Score=61.82 Aligned_cols=130 Identities=18% Similarity=0.034 Sum_probs=106.2
Q ss_pred HHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 45 LSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAGLLSAFSLNYLSLVTLR 121 (179)
Q Consensus 45 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (179)
.....+.+. +.+|.++.|.|.+.+...+...+.+....+..||.. .+-.+..+..+.....++...++....++...
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s 359 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGS 359 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHH
Confidence 334444453 458999999999999999999999999999999887 66677777777666666777677767777777
Q ss_pred HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.+..+..+.. +....++....|+++||..+|+......++-.+||+++|.+..
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 7777777766 7778888999999999999999999999999999999987654
No 232
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.30 E-value=3.3e-10 Score=88.16 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=87.5
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH--H---HHH----
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA--F---SLN---- 113 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~--~---~~~---- 113 (179)
.....+.+.+.++.+.+.. -.......+...++.+....+.||+|||+.++.+....++..+.++ . .++
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4445556777777777666 2333344455566777777999999999999999888777776654 1 111
Q ss_pred HHHHHHHHHHHHhhcC--chhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 114 YLSLVTLRGLVGIGLG--SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
-...++...+...+.+ ..+....+..|.+|.+.|+++.++......+++.++|.+...+.+..
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 412 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL 412 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111222222222222 22556678899999999999999988888888888887766665543
No 233
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.30 E-value=2.6e-05 Score=59.89 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=110.9
Q ss_pred Hhhhcchhcc-cCCCchhHH-HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSE-WNLSPAQET-LLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL 123 (179)
Q Consensus 46 ~~~~~~~~~~-~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
++..|++.+. .|++++|.. -+.-+..-.+....++...++|..+.|++++++.+...+...+..+.++...+.+..++
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~ 103 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF 103 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 4555667665 788888864 67777788888899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 124 VGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 124 ~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.|+..+...+.++++=...|+++--++.+....+.-+|..++.+++-.++..
T Consensus 104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999877677888887777888888888888888888888888888877764
No 234
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.28 E-value=1.9e-05 Score=63.46 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhc-ccCCCc---hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHH-HHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKS-EWNLSP---AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGL-LGIAMLAS 102 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~---~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~-~~~~~~~~ 102 (179)
+....+..++.+..++....+.|.... -++.|+ .+.++......++..+++.+.|.+..|++|-|.. +.+..++.
T Consensus 312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t 391 (599)
T PF06609_consen 312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT 391 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 333334444555545544444444332 344444 3678888899999999999999999888766554 56666665
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 103 VAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 103 ~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
++.-.++.. +|....+...++.|++.|.. .+......-..|+++-+.+.++......+|+.++.-+-.-+.
T Consensus 392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554444432 34455567788899988887 666666677889999999999999999999999877665544
No 235
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.27 E-value=2.5e-05 Score=60.93 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=96.7
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHHHHHHHHHHHHHHHHH----HHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGIAMLASVAGLLSAFSL----NYLS 116 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~~~~~~~~~~~~~~~~----~~~~ 116 (179)
....+++++++|+++++.....++..+... ..++.|.++|.+. ||+.++++.++.+++...++..+ +...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 344577888999999999988888888765 4678899999863 55556666666655555444422 4555
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIP--ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..+..++..++.... ...-+.+.|... ++.|+...+.......+|+.++..+++.+.+..+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~ 152 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG 152 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 556667777777777 777777777653 2337888999999999999999999999887654
No 236
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.19 E-value=7.8e-06 Score=64.49 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLLGIAMLA 101 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~~~~~~~ 101 (179)
.+...+++.++.....+...+.+|.+.++ .|.|+.+.+.+...+.++.+++.++.|.++|| ..+|........+.
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555666677777777777888888877 66899999999999999999999999999999 66666666555554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccch-hHHHHHHHHHHHHHHHHHHH
Q 030356 102 SVAG-LLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR-GMWMVVISIFWTLGTIFEAA 167 (179)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~ 167 (179)
.+.. +.+....+........+....+.... +....+.++....+.| -...+.+..+.+.++.++|.
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 4333 33333322222222222222223333 4555666665554444 44444566666665555544
No 237
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.1e-06 Score=67.60 Aligned_cols=149 Identities=15% Similarity=0.008 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHH--------HHHHHHH-HHHHHHHHHhhhhccccchhHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETL--------LTSVVFA-GLLVGSYSWGFISDNYGRRKGLLG 96 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~ 96 (179)
+.++..+..++..-...+........+.++.+..+.+... ...+... +...+-++...+.|++|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4445555555655555555556666666666654443322 2222222 223366778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 97 IAMLASVAGLLSAFSLN----YLSLVTLRGLVGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
+.+++.+..+.++...| -..+.+...+..+..... .....+-+|.+|.+.|+++-++.....-.|++++...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999888876554 122233323333322222 334456689999999999999999999999999988888
Q ss_pred HHhc
Q 030356 171 GNIL 174 (179)
Q Consensus 171 ~~~~ 174 (179)
++.+
T Consensus 464 ~~t~ 467 (538)
T KOG0252|consen 464 YLTD 467 (538)
T ss_pred Hhhh
Confidence 8776
No 238
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.14 E-value=0.00033 Score=55.55 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccc--hh-----HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGR--RK-----GLLGIAMLASVAGLLSAFS---------LNYLSLVTLRGLVG 125 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G 125 (179)
..++..++..+..++.+|+.+++=.|.++ |. =+.+++++.+++.+.+... .+..+++...++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 36788888888888888888887666532 21 1566777777776555431 14566777888999
Q ss_pred hhcCch-hhHHHHHHHhccccchhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030356 126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIF-WTLGTIFEAALAWGN 172 (179)
Q Consensus 126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~ 172 (179)
+|.-.. |+..+.+++..|++.||+.++.+... ..+|..++..++...
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888 99999999999999999999998764 367777766666554
No 239
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.09 E-value=0.00027 Score=56.41 Aligned_cols=102 Identities=24% Similarity=0.201 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCch-hhHHHHHHHhccccchh
Q 030356 73 GLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLS---LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRG 148 (179)
Q Consensus 73 ~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~ 148 (179)
.........+...|+.|||.....+..+..++.+..+....... ..+...+...+.+.. .....+..|.+|+..|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 55555666689999999999999999999999988887654332 334444444444444 55688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 149 MWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 149 ~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.+.+..+....+|.+++|.+......
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998865543
No 240
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=7.9e-06 Score=66.52 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
.+.++++..+.+.+........+..+.+.++++.++.|++.+.+-++..+...+..+..-|..|-+.+-.+.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 44455566667777666667777888888999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHH-----------H----------------------------------------HH-HHHHHHHHHHhhcCch-hh
Q 030356 107 LSAFSL-----------N----------------------------------------YL-SLVTLRGLVGIGLGSG-PV 133 (179)
Q Consensus 107 ~~~~~~-----------~----------------------------------------~~-~~~~~~~l~G~~~g~~-~~ 133 (179)
++++-+ + .+ .++++.++.|+|.... +.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 776410 0 12 4556789999999988 89
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 134 CLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 134 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..+++-|...+++-....++......+|.++|-++++++.+.+.
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv 301 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV 301 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999887653
No 241
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.07 E-value=0.00066 Score=52.23 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=81.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHhhcCch-h
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS--VAGL---LSAFSLNYLSLVTLRGLVGIGLGSG-P 132 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~G~~~g~~-~ 132 (179)
..++-.+...++.+|..+++--...+ |+ |+..+.+.+-.. +..+ ..-+.++.+.+++..+..|+..|.. .
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45567888888888888877654332 33 344333332222 2222 2234678888888899999988888 7
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
.....+.|..|+++|..+++....+-++|..++.+++-.+-.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 788888888999999999999999999999999888876643
No 242
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.06 E-value=0.00055 Score=54.17 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhcCch-hhHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI-AMLASVAGLLSAFS-L-NYLSLVTLRGLVGIGLGSG-PVCLSW 137 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~-~~~~~~ 137 (179)
-.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+....+.+. + ++....+..++.-++.+.. ....++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999988766655 44455555655553 3 3444444445555666666 677899
Q ss_pred HHHhccccch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 138 FLEFIPASNR--------------------------GMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 138 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
+.|..+++.+ ++..+.-.....+|+.+.-.+.-.+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~ 212 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV 212 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 88888877777788777666655544
No 243
>PTZ00207 hypothetical protein; Provisional
Probab=98.01 E-value=8.2e-05 Score=60.04 Aligned_cols=145 Identities=12% Similarity=-0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhccc-CCCc-hhHHH-HHHHHHHHHHHHHHHHhhhhcc---------ccchhHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEW-NLSP-AQETL-LTSVVFAGLLVGSYSWGFISDN---------YGRRKGLL 95 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~-~~~~~-~~~~~~~~~~i~~~~~g~l~d~---------~G~r~~~~ 95 (179)
++++++.+++....-.....-.-++.+.+ |.+. ++... +.++.++++.+|.+..|.+... +.|--.+.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 34444444444433333344445566666 5522 32222 7899999999999999988722 22222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 030356 96 GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFE-AALAWGNI 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~~~ 173 (179)
+..+ +.++.+++++.-+...+++.-++.|++.|.. +.....++|.|. |+-|+-..+...+..+|..+- -.+.+.+-
T Consensus 435 ~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Y 512 (591)
T PTZ00207 435 IPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWY 512 (591)
T ss_pred HHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333 5555555555433357899999999999999 899999999999 888888888888888887664 55666655
Q ss_pred c
Q 030356 174 L 174 (179)
Q Consensus 174 ~ 174 (179)
|
T Consensus 513 d 513 (591)
T PTZ00207 513 T 513 (591)
T ss_pred H
Confidence 4
No 244
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.91 E-value=0.003 Score=49.86 Aligned_cols=141 Identities=11% Similarity=-0.012 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhcccCC-----CchhHHHHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNL-----SPAQETLLTSVVFAGLLVG-SYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
.+....+.+++....++..-. +++++.. +.+...++-+...+...+. .++.+++++|++|++.+-.....
T Consensus 8 k~~~~~l~fF~il~~Y~iLR~----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~ 83 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTILRD----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP 83 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence 334444444555544444333 4444433 4467888888887777766 89999999999999988776666
Q ss_pred HHHHHHHHHHH----HH---------------------------HH---HHHHHHHHHHhhcCch-h-hHHHHHHHhccc
Q 030356 101 ASVAGLLSAFS----LN---------------------------YL---SLVTLRGLVGIGLGSG-P-VCLSWFLEFIPA 144 (179)
Q Consensus 101 ~~~~~~~~~~~----~~---------------------------~~---~~~~~~~l~G~~~g~~-~-~~~~~~~~~~~~ 144 (179)
......++++. ++ .| .+++..=+.| ... . ....++.|.+..
T Consensus 84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~fandi~t~ 160 (472)
T TIGR00769 84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGFANQITTI 160 (472)
T ss_pred HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCH
Confidence 55555544432 00 11 2222222222 222 3 567889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 145 SNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 145 ~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
++-.|..+++..+.++|..+++.+..++.+
T Consensus 161 ~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 161 DEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888773
No 245
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.81 E-value=0.00022 Score=58.39 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHH
Q 030356 33 LGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAG 105 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~ 105 (179)
+..++............|. +.+++|.++.+++++.....+ +.+++.++.|++.||++ .|+.+..+.++..+..
T Consensus 337 l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 337 LAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 3333444444444444454 455699999999999988776 67899999999999998 4456665555555543
No 246
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.77 E-value=0.0034 Score=48.98 Aligned_cols=142 Identities=18% Similarity=0.120 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL 107 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~ 107 (179)
.+...++..+-++....+......+....|+++...+..-+...+..+.+.+...++.+|+|..|.=..+......+..+
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 44444444444443333444555555566999999999999999999999999999999999888766665544333322
Q ss_pred HH---HH---H----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356 108 SA---FS---L----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169 (179)
Q Consensus 108 ~~---~~---~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 169 (179)
.. +. + +...++.+-.+.=+|.=.. ....-++.|..|+++||...+.-+...++.-.+...++
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 1 2223333333333444445 56677889999999999999998888888777765544
No 247
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.73 E-value=0.00016 Score=53.93 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
..+++..+++.-++.|.|.+.. +..++++++..|+|++++.+++.+...++|..++|.+++.++.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4578999999999999999998 9999999999999999999999999999999999999999884
No 248
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00046 Score=53.95 Aligned_cols=105 Identities=12% Similarity=-0.033 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccc
Q 030356 66 LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPA 144 (179)
Q Consensus 66 ~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~ 144 (179)
-.++......+.+++.+.+.|+.|.|+.++++........+.+.+.+ -+.+++...+.|+|.+.. .....+++|..++
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~ 133 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTR 133 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence 47888888999999999999999999999999999888877765555 456788899999999988 7778999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 145 SNRGMWMVVISIFWTLGTIFEAALAWG 171 (179)
Q Consensus 145 ~~r~~~~~~~~~~~~~g~~~~~~i~~~ 171 (179)
|.+.+..++.......+.++|..+-..
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 999999999888888887777555443
No 249
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.55 E-value=3.9e-05 Score=55.67 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=71.3
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
.++.-++.++++..+.+++.+....+-...+...+.|.++||-|||+..+.-++.+.+.++ .-.++.|-.++++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence 4444556778899999999888888888888889999999999999976554444433322 223567888999999999
Q ss_pred hhcCch-hhHHHH-HHHhc
Q 030356 126 IGLGSG-PVCLSW-FLEFI 142 (179)
Q Consensus 126 ~~~g~~-~~~~~~-~~~~~ 142 (179)
+..+.. ...-++ +.|+-
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 988877 665554 46654
No 250
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.34 E-value=0.016 Score=45.51 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccch-hHHHHHHHHHHHHHH---HHHHH---------HHHHHHHHHHHHHHhhc
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRR-KGLLGIAMLASVAGL---LSAFS---------LNYLSLVTLRGLVGIGL 128 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r-~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~l~G~~~ 128 (179)
-.-....+++++-.+|+.+..+.. .-++| +.+.+..+.=.+... ++... ++-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 345678888999999998665431 11222 133333333222322 22211 24455677789999999
Q ss_pred Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
|-. .....+..+..++++|..+..+...+..+|..+|..++..+..
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~ 433 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVA 433 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 7788888888999999999999999999999888888766543
No 251
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=97.27 E-value=0.0046 Score=46.18 Aligned_cols=99 Identities=9% Similarity=0.098 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG 105 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~ 105 (179)
+-...+...++.....+.....+......++|... .....+..+..+++.+.+.+++|.|++++++...+.+..
T Consensus 29 knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~s------l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi 102 (390)
T KOG3097|consen 29 KNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVS------LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI 102 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccch------hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444555554444444444444444444221 122344555667777799999999999998887776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356 106 LLSAFSLNYLSLVTLRGLVGIGLGSG 131 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~G~~~g~~ 131 (179)
.. -+-+.+..+.......|++.+..
T Consensus 103 A~-Nl~pr~~tlVPa~~~~G~aa~p~ 127 (390)
T KOG3097|consen 103 AA-NLEPRYETLVPAGLVLGMAAGPI 127 (390)
T ss_pred Hh-hcchhHHhhccHHHhhccccccc
Confidence 32 23456777888888899888776
No 252
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.26 E-value=0.0026 Score=49.03 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHhhcCch-hhHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLG-IAMLASVAGLLSAFSLN--YL-SLVTLRGLVGIGLGSG-PVCL 135 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~G~~~g~~-~~~~ 135 (179)
+..+...++..+..++-+|+.|.++|+.|+||.... ...+..++...+.+.++ ++ ...+...+..++.... ....
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 345788889999999999999999999997776554 44555566666666654 43 3344556666776666 6678
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 030356 136 SWFLEFIPASNRGMWMVVISIFWTLGTIFE 165 (179)
Q Consensus 136 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 165 (179)
+++.+..++++-++..++-.....+|+.+.
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~ 167 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVIL 167 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHH
Confidence 999999999888888777444444555544
No 253
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.25 E-value=9.3e-05 Score=58.32 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH-HHHHHHHHH
Q 030356 39 AMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA-SVAGLLSAF 110 (179)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~-~~~~~~~~~ 110 (179)
+.......++++-+.+++|+++.+.+.++..--+..+++.|++|.++||+-+||.++++.++. ..+.+++.+
T Consensus 24 ~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 24 GARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred eecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 333445566667788899999999999999999999999999999999999888877775554 344444444
No 254
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00051 Score=53.31 Aligned_cols=120 Identities=20% Similarity=0.135 Sum_probs=73.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch----hHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHH
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR----KGLLGIAM-------LASVAGLLSA-FSLNYLSLVTLRGL 123 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r----~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~l 123 (179)
.|.+..+..++..+...+..+|.++.|.++||+-|+ ....+.-+ ..+....+.. ...+...+.+..++
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~ 357 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL 357 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456777777888888899999999999999994332 11222211 1222222222 22233334444555
Q ss_pred HHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 030356 124 VGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILL 175 (179)
Q Consensus 124 ~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~ 175 (179)
.|...... .....+..|..|+++|.++.++-.....+ |..-+|.+.+.+.++
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 66544443 33445668889999999999995554444 555557688888764
No 255
>PRK03612 spermidine synthase; Provisional
Probab=97.11 E-value=0.086 Score=42.45 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=66.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH--HHHHHHHHH----HHHHHH-HHHHHHHHHHHhhc
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM--LASVAGLLS----AFSLNY-LSLVTLRGLVGIGL 128 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~--~~~~~~~~~----~~~~~~-~~~~~~~~l~G~~~ 128 (179)
+|.+..+.+.+.+++..|..+|+.+.+++.++.-++...+-..+ +..++..+. .+.... ..++...++.++..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999999999999988754333332211111 111111111 111111 12233344556666
Q ss_pred Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
|+. |.......+. ..++-+...|-......+|+++|.++.+++.
T Consensus 125 G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 665 5444433332 1223456667777788888888888877765
No 256
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.04 E-value=0.037 Score=44.98 Aligned_cols=134 Identities=11% Similarity=-0.003 Sum_probs=100.8
Q ss_pred HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHH--------
Q 030356 43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLN-------- 113 (179)
Q Consensus 43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~-------- 113 (179)
.....+..++.++++.+..++.-..+.+.-......+..++++|. +||-+++.++.++..++..+...+..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 344667788888899888888888888888888888999999996 78889999998888888655443211
Q ss_pred -----------------HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc---c-cch--hHHHHHHHHHHHHHHHHHHHHH
Q 030356 114 -----------------YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP---A-SNR--GMWMVVISIFWTLGTIFEAALA 169 (179)
Q Consensus 114 -----------------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~---~-~~r--~~~~~~~~~~~~~g~~~~~~i~ 169 (179)
...++...-+..+|.|+. +...++-+|-++ + +.+ ...+.++.....+|..++-.+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 124455566777788888 888889888888 2 223 3778888889999998887777
Q ss_pred HHHhccC
Q 030356 170 WGNILLN 176 (179)
Q Consensus 170 ~~~~~~~ 176 (179)
-++.+..
T Consensus 215 vyiq~~~ 221 (571)
T KOG1237|consen 215 VYIQDNV 221 (571)
T ss_pred Hhhhhcc
Confidence 7775543
No 257
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.02 E-value=0.04 Score=43.55 Aligned_cols=110 Identities=17% Similarity=0.083 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccch--h-----HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRR--K-----GLLGIAMLASVAGLLSAFS----------LNYLSLVTLRGL 123 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r--~-----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l 123 (179)
-..++..++..+.-++.+++..++-.|.+++ . -+-++..+.+.+.+++... -+.++++..-++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3457788888888888888888888775544 1 1334444444444443332 145677888899
Q ss_pred HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
++++.=.. |+..+++.+..|++-.+..++.+.+....|..++..++.
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 99999888 999999999999999999999999888888887766655
No 258
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.92 E-value=0.0024 Score=48.83 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc---chhHHHHHHHHHH
Q 030356 92 KGLLGIAMLASVAGLLSAFSL---------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS---NRGMWMVVISIFW 158 (179)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 158 (179)
|++.++.++..++.++...+. +...++++..+.++|.|+. +...++.+|.++++ +|.+++.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567788888888888755432 2256788889999999999 99999999999876 4678888999999
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 030356 159 TLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 159 ~~g~~~~~~i~~~~~~~~~ 177 (179)
++|..+++.+..++.+..+
T Consensus 82 n~G~~~~~~~~~~i~~~~~ 100 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG 100 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-
T ss_pred hhhhHhhcccchhhccccc
Confidence 9999999988888876543
No 259
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.56 E-value=0.015 Score=45.30 Aligned_cols=148 Identities=14% Similarity=0.053 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch-hHHHHHHHHHHHHHH
Q 030356 28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR-KGLLGIAMLASVAGL 106 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r-~~~~~~~~~~~~~~~ 106 (179)
+.++.+++.............+......-|.+....|++.....++..+++.+.|.+.||...- ...++......++..
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~ 347 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL 347 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444434444556667899999999999999999999999997744 444444444444422
Q ss_pred -HHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 107 -LSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEF-IPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 107 -~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+..... ....++....+.|.+.... |...-+..|. +|..+ +.-.|+.+...++-+++-..+-+...+..
T Consensus 348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-~tSsGll~~~gq~f~~~~~~~~~~~~~~~ 422 (480)
T KOG2563|consen 348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-GTSSGLLNLSGQIFGVILVFIMGILAEDL 422 (480)
T ss_pred HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-cccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence 111111 2244555667778777777 7777777775 55444 44466766666665555556555555443
No 260
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.41 E-value=0.021 Score=44.81 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=90.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh
Q 030356 58 LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF----------SLNYLSLVTLRGLVGIG 127 (179)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~ 127 (179)
.|+...+.+..+..++..++..+..+..-+..-|+++....++.++..+.... .++.+..+.-.++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888999999999999999999998888888888888877776655543110 11222222233444444
Q ss_pred cCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 128 LGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.... .+...+++|..|+..-|+..++.....++|..++..++..+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444 5667788999999999999999999999999999999998887544
No 261
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.28 E-value=0.0011 Score=53.34 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLA 101 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~ 101 (179)
..+....++.............+.| ++..+|+.++++++.+.....+ +.++|.++.|.+..|+. .|..+....+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 4445555555555555544444554 5556699999999988876666 66688999999999875 344433333222
Q ss_pred HHHHHH---HHH-----------HHHH----------------------------------------HHHHHHHHHHHhh
Q 030356 102 SVAGLL---SAF-----------SLNY----------------------------------------LSLVTLRGLVGIG 127 (179)
Q Consensus 102 ~~~~~~---~~~-----------~~~~----------------------------------------~~~~~~~~l~G~~ 127 (179)
.+..+. ..+ ..++ ..+++..++.-+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 222211 000 0001 1122222222233
Q ss_pred cCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 030356 128 LGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~ 175 (179)
.+.. .+.....-...|+++|+.+.|+.. ...-+|.+-+|++-|.++|.
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------
T ss_pred HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 3333 444455567889999999999955 55566778899999999985
No 262
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.059 Score=41.49 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-----cccchhHHHH-HHH
Q 030356 26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-----NYGRRKGLLG-IAM 99 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~G~r~~~~~-~~~ 99 (179)
.-+..+.+.+..++....... ..|.+.+.-|.|-++.+.....+. -.---++|.++.| |+||||..++ +..
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 334445555778888887777 778888877777776654332111 1123567888888 9999986432 233
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356 100 LASVAGLLSAF-----------SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAA 167 (179)
Q Consensus 100 ~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 167 (179)
+....+...+. .++........++.-+..+.. .+.-.+.-.+..+++-|-+......+...|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 33333333322 122222222334444445555 566677777888888888877777777777766643
No 263
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.44 Score=37.75 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc---cccchhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISD---NYGRRKGLLGIAMLASVAGLLSAFS------------------LNYLSLVTL 120 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d---~~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 120 (179)
-.+.-.....++..++....+.+.+ |+||++.+.++..+..+..++.-.. +++....+.
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 3455666677777788888888875 5889998888888777666654321 135567778
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF 164 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 164 (179)
.++.|++-+.. ...+..+.+.+ +++|..+.+++-.-..++..+
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence 88899988877 77788888888 577887777765555555443
No 264
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.68 E-value=0.4 Score=37.38 Aligned_cols=100 Identities=8% Similarity=-0.071 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHH
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI--AMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCL 135 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~ 135 (179)
+..--|.+-++..+..+++++..|++..++.+..-+.++ .++.+...+++...+|.+..+++-++.+...-.. +...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334458888888999999999999997777765544433 4444555667788899999998888888777776 7788
Q ss_pred HHHHHhccccchhHHHHHHHHHH
Q 030356 136 SWFLEFIPASNRGMWMVVISIFW 158 (179)
Q Consensus 136 ~~~~~~~~~~~r~~~~~~~~~~~ 158 (179)
.-++....++.-+..+|+.....
T Consensus 363 ~qIA~~l~~e~yaLVFGiNtf~A 385 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINTFVA 385 (412)
T ss_pred HHHHHhccccceeeeeeeHHHHH
Confidence 88888888787788888766543
No 265
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.28 E-value=0.018 Score=45.49 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=90.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhH----HHHHHHHHHHHHHHHHHHhhhh-ccccchhH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQE----TLLTSVVFAGLLVGSYSWGFIS-DNYGRRKG 93 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~----~~~~~~~~~~~~i~~~~~g~l~-d~~G~r~~ 93 (179)
..+..+.....+.+..+.........-...+. ....++.+.++. +...++..+-.....+...... -|+..|+.
T Consensus 256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~ 335 (488)
T KOG2325|consen 256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI 335 (488)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence 34445555566665566555555553433333 333466655554 3333333333333333333333 23345665
Q ss_pred HHHHHHHHHHHHHHHH----HHH---------------------------HHHHHHH-HHHHHHhhcCch-hhHHHHHHH
Q 030356 94 LLGIAMLASVAGLLSA----FSL---------------------------NYLSLVT-LRGLVGIGLGSG-PVCLSWFLE 140 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~----~~~---------------------------~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~ 140 (179)
+..+.+.......+.. +.+ +...+++ .-++.|.+.-.. ....+.-+|
T Consensus 336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 5555444333332221 100 0112222 345666666655 567788899
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 141 FIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 141 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
...+++++...++++....++..++|++...+-...|
T Consensus 416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g 452 (488)
T KOG2325|consen 416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG 452 (488)
T ss_pred HhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC
Confidence 9999999999999999999999999999888766554
No 266
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.02 E-value=0.35 Score=37.58 Aligned_cols=103 Identities=18% Similarity=0.016 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI 142 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~ 142 (179)
+.+.-.-.+...+..+...+..+|...+.=+..+..+..++.++.+++++.+.-+++-.+.+++.|.. .....+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 34555556667777788889999988666566667778888888888899888888899999988887 544444 5566
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 143 PASNRGMWMVVISIFWTLGTIFEAALAWG 171 (179)
Q Consensus 143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 171 (179)
++. ..+-+..+.+.++.+|+..=..
T Consensus 141 ~~~----~l~~wssGTG~aGl~Ga~~y~~ 165 (402)
T PF02487_consen 141 GKS----SLSAWSSGTGGAGLVGALYYLG 165 (402)
T ss_pred Ccc----ccccccCCcChhhHHHHHHHHH
Confidence 642 3556666666666666554433
No 267
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=94.25 E-value=2.3 Score=34.02 Aligned_cols=153 Identities=8% Similarity=0.002 Sum_probs=99.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
.++..+..+..+.+.+++..+.+...-..-+.+.-. ..+++...++=+..-+ +..+..++..++.+++.+.+++-..+
T Consensus 21 i~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~ 99 (509)
T COG3202 21 IRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIIL 99 (509)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 345555555666666666666555544433333222 2356667777777777 67788899999999999999877666
Q ss_pred HHHHHHHHHHHHH---------------H--------------------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356 99 MLASVAGLLSAFS---------------L--------------------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI 142 (179)
Q Consensus 99 ~~~~~~~~~~~~~---------------~--------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~ 142 (179)
.......+++++. . ++..++++.=+.|.-. . ..-.....|..
T Consensus 100 ~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV--~S~lFw~faNeit 177 (509)
T COG3202 100 GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLV--LSLLFWQFANEIT 177 (509)
T ss_pred HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 5555555444431 1 1122333333333211 1 23456778899
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 143 PASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
..++-.|..++++...+++..++..+..++.+.
T Consensus 178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998888887764
No 268
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=94.10 E-value=0.69 Score=37.01 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL--GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWF 138 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~ 138 (179)
--|.+-++..+..++.++..|++-.++.+---+. +..++.+...+++...+|++..+++-++.+..+... ++...-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888889999999977775432333 334445555567778899999999999988888887 8888888
Q ss_pred HHhccccchhHHHHHHHHHH
Q 030356 139 LEFIPASNRGMWMVVISIFW 158 (179)
Q Consensus 139 ~~~~~~~~r~~~~~~~~~~~ 158 (179)
++....+.-|..+|+.++..
T Consensus 379 A~~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 379 ASSLSKELCALVFGINTFVA 398 (511)
T ss_pred HHHhcccceEEEEecHHHHH
Confidence 88888777788777766443
No 269
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.38 Score=37.31 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcCch-
Q 030356 63 ETLLTSV-VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---------SLNYLSLVTLRGLVGIGLGSG- 131 (179)
Q Consensus 63 ~~~~~~~-~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~g~~- 131 (179)
.-....+ +++...+|.+...++-++-.|+.. +..++-.+..-++.+ -.+-+.+++...+.|+..|-.
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~--i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLT--IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCCCceeh--HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 3445555 889999998888877765533332 333332222222221 224466778888999999887
Q ss_pred hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 132 PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~ 173 (179)
.....+..+..|++++-.+-.+.......|...|..++....
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~~ 403 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVFV 403 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777888888899999988888888888888888877766543
No 270
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=93.80 E-value=0.022 Score=42.59 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHHHHhhcCc
Q 030356 65 LLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAG---LLSAF----------SLNYLSLVTLRGLVGIGLGS 130 (179)
Q Consensus 65 ~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~l~G~~~g~ 130 (179)
....+++++-.+|+.+.++..-+. .+|+.. +..+.=.+.. +++.. .++-+..++..++.|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356688999999999877643211 244333 3322222222 22211 12335566778899999998
Q ss_pred h-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 131 G-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 131 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
. .....+..+..++++|..+..+......+|-.+|..++..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~ 307 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL 307 (309)
T ss_dssp --HHHH-------------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 88888889999999999988888888888888887776554
No 271
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=93.65 E-value=3.1 Score=33.45 Aligned_cols=151 Identities=12% Similarity=0.028 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHH
Q 030356 20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIA 98 (179)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~ 98 (179)
..+..++-++.+.+.+++..+.+...-..-+.+.-+-. +++....+=....+ +..+...+..+++++++|.+++-...
T Consensus 18 i~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~ 96 (491)
T PF03219_consen 18 IHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIII 96 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34555555666666667766666655544444332222 55556665554444 44456778999999999999876655
Q ss_pred HHHHHHHHHHHHH---------HH-------------------------HHHHHHHHHHHHhhcCch-h-hHHHHHHHhc
Q 030356 99 MLASVAGLLSAFS---------LN-------------------------YLSLVTLRGLVGIGLGSG-P-VCLSWFLEFI 142 (179)
Q Consensus 99 ~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~~ 142 (179)
........++++. ++ +..+++..=+.|. .. + .-+.++.|.+
T Consensus 97 ~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgs---vvlSlLFW~fAN~it 173 (491)
T PF03219_consen 97 IPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGS---VVLSLLFWGFANEIT 173 (491)
T ss_pred HHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 5544444333321 10 1122222222221 22 2 3467888999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 143 PASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
+.++-.+..+++..+.++|.+++..+..++.+
T Consensus 174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888776
No 272
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=91.95 E-value=0.91 Score=34.25 Aligned_cols=109 Identities=15% Similarity=0.034 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM---LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSW 137 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~ 137 (179)
|--|....+.+|..+..-..-...-+ .-+.+.+--. +..+.-.+..+.++++..++.-+.-|+-.|.. ....--
T Consensus 289 qYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred cchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 46688888877765544322111111 1122222112 22222334556788888888888999877776 667777
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 138 FLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 138 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
+.+-.++++|-.+++.....-.+|..++..++-.+
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 77778889999999999999988888887766443
No 273
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.35 E-value=1.1 Score=37.59 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHHH
Q 030356 27 VLIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLAS 102 (179)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~ 102 (179)
+.....++..+..........++| ++.++|+.+.+.+..++....+ +.++|..+.|++..|+- .|....+.++...
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~ 472 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV 472 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence 444555555555555554444444 5556699999999998855555 45588889999998865 4444444433333
No 274
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=91.08 E-value=3.9 Score=32.59 Aligned_cols=68 Identities=22% Similarity=0.096 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG 131 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 131 (179)
.|=..++.+...+.+...-++.||+|-|+.+..+.....++..+.+..++......-+-..|+-.+..
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~ 402 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL 402 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecch
Confidence 34556677777799999999999999777777777767777777777777777777777777544443
No 275
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=89.93 E-value=0.16 Score=38.69 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=94.7
Q ss_pred hhhcchh-cccCCCchhHH-HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 47 FIGPAIK-SEWNLSPAQET-LLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV 124 (179)
Q Consensus 47 ~~~~~~~-~~~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
+..|++. .+.++++.|.. -+.-+..-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++...+-+..++.
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3444444 34566776653 233344445555566666789999999998888777777778888888888888888888
Q ss_pred HhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 125 GIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 125 G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
|...+.....++++=+..+++++-+..+.--.+.-.|-..+..++-.++..
T Consensus 106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 887766577788888888999999988887777777777777777776643
No 276
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=89.48 E-value=8.3 Score=29.85 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL--GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLE 140 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~ 140 (179)
|..-++..+..+++.+..|.+.-++.|..-++ ++....+...++++.+++++..++.-++.+...... ++....+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 56667778888899999999988777764443 334444444556667778888888887777777776 788888888
Q ss_pred hccccchhHHHHHHHHH
Q 030356 141 FIPASNRGMWMVVISIF 157 (179)
Q Consensus 141 ~~~~~~r~~~~~~~~~~ 157 (179)
....|.-|..+|+....
T Consensus 354 nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFV 370 (433)
T ss_pred hhhhhhheeeeehHHHH
Confidence 88877778777776543
No 277
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=87.68 E-value=12 Score=29.61 Aligned_cols=143 Identities=10% Similarity=-0.045 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhhcchhccc-CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH----HH
Q 030356 35 LVAEAMEIMILSFIGPAIKSEW-NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL----SA 109 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~----~~ 109 (179)
.++.....-.+.+..+.+..+. .-+---.+...-.-.+..++.++..|.+.||..|.++...+.+..-+.... ..
T Consensus 11 h~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 11 HFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445444443 213333444455556677788899999999999999876665443333321 11
Q ss_pred --HH--H-----H--HHHHHHHHHHHHhhcCchhhHHHHH--HHh----c--cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 110 --FS--L-----N--YLSLVTLRGLVGIGLGSGPVCLSWF--LEF----I--PASNRGMWMVVISIFWTLGTIFEAALAW 170 (179)
Q Consensus 110 --~~--~-----~--~~~~~~~~~l~G~~~g~~~~~~~~~--~~~----~--~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 170 (179)
+. + + ...+++.-.+.|...-......... .|| . +++.+.+.++..--.-.+...++|++.+
T Consensus 91 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG 170 (432)
T PF06963_consen 91 LLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVG 170 (432)
T ss_pred HHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 1 1111222222222221222222111 223 2 4455677777777777788899999999
Q ss_pred HHhccCC
Q 030356 171 GNILLNS 177 (179)
Q Consensus 171 ~~~~~~~ 177 (179)
.+.+..+
T Consensus 171 ~l~t~~s 177 (432)
T PF06963_consen 171 LLMTFAS 177 (432)
T ss_pred HHhhccC
Confidence 9987543
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=85.53 E-value=5.6 Score=32.12 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhcc--cCCCchhHHHHH--HHHHHHHHHHHHHH-hhhhccccchhHHHHH-HHHHHHH
Q 030356 31 AGLGLVAEAMEIMILSFIGPAIKSE--WNLSPAQETLLT--SVVFAGLLVGSYSW-GFISDNYGRRKGLLGI-AMLASVA 104 (179)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~--~~~~~~~~i~~~~~-g~l~d~~G~r~~~~~~-~~~~~~~ 104 (179)
+.+.+++++..........|.+.++ -+.|-+|.+... +-.+---.+.+|+. .....|+||||..++- -.+.++.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3444566666665544455777777 567777765422 11111122233322 2345589999975543 2333333
Q ss_pred HHHHHHHH----------------------HHH--HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHH
Q 030356 105 GLLSAFSL----------------------NYL--SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWT 159 (179)
Q Consensus 105 ~~~~~~~~----------------------~~~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 159 (179)
.+.....- +.. .+....++.=+-.+-. .+.-.+.-.+..++.++.+..-...+..
T Consensus 85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~ 164 (544)
T PF13000_consen 85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQT 164 (544)
T ss_pred HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhh
Confidence 33322111 000 1112221222222333 4445666677788888888877777777
Q ss_pred HHHHHHHHHH
Q 030356 160 LGTIFEAALA 169 (179)
Q Consensus 160 ~g~~~~~~i~ 169 (179)
.|.+++..+-
T Consensus 165 ~Gyfls~tvF 174 (544)
T PF13000_consen 165 AGYFLSFTVF 174 (544)
T ss_pred hhHHHHHHHH
Confidence 7777764443
No 279
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.45 E-value=7.6 Score=24.15 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS 102 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~ 102 (179)
..+.......++..++....+.+.|..|.+..+........
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence 34666777788888888888888888887776655444433
No 280
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=84.33 E-value=19 Score=28.50 Aligned_cols=128 Identities=10% Similarity=-0.019 Sum_probs=72.7
Q ss_pred hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc------cchhHHHHHHHH-HHHHHHHHHH-HH-------H
Q 030356 49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY------GRRKGLLGIAML-ASVAGLLSAF-SL-------N 113 (179)
Q Consensus 49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------G~r~~~~~~~~~-~~~~~~~~~~-~~-------~ 113 (179)
.+.-.-|.|++.++.+.+.-...-..++.....|+++.+. -|+..+-+.... ..+....... .+ .
T Consensus 288 t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~ 367 (510)
T KOG3574|consen 288 TSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRG 367 (510)
T ss_pred cchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeec
Confidence 3444567899999888766444444445555555554321 111111111111 1111111111 01 1
Q ss_pred HHH-HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 114 YLS-LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 114 ~~~-~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+.. .+....+.+...-.. ....+..++..+|+..|+.|.+.+...++|+-.-..+..+++|..
T Consensus 368 ~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 368 YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 222 222334444433333 556777889999999999999999999999988888888887754
No 281
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=80.47 E-value=30 Score=28.21 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
.++..+..-.. ....++-+++.+|..-|+.|.+.|+..++|+-.-..+.-+++|..
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 44444544445 566778889999999999999999999999988888888888764
No 282
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.23 E-value=4.3 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
+..|-+.+.+.-.+++.++++++..|+.-+.+.=.++..+..++..++
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 567888899999999999999999999887777666666665555443
No 283
>PRK02237 hypothetical protein; Provisional
Probab=75.97 E-value=8.8 Score=23.95 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
+..|-+.+.+.-.+++.++++++..|+.-.-+-=.++..+..++..++
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 457888999999999999999999999877776666666655555444
No 284
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=75.77 E-value=29 Score=25.56 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHH----HHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhhcCch-h
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLL----GIAMLASVAGLLSAF-S----LNYLSLVTLRGLVGIGLGSG-P 132 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~----~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~G~~~g~~-~ 132 (179)
....-++..|..+|....|..... +.||+.+. .+.+..++..+.... . .+...+++..++.|++.=+. +
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445556666677777888888765 44444333 222223332222111 1 13556777777877755333 3
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356 133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIF 164 (179)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 164 (179)
+... +.+.++...+-+.--.+...+++|.++
T Consensus 224 ViL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILN-LPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhc-ChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 3322 233333333333333355556666544
No 285
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=73.85 E-value=36 Score=25.69 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHhhcCch-h
Q 030356 63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRK--GLLGIAMLASVAGLLSAF----SL---NYLSLVTLRGLVGIGLGSG-P 132 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~--~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~g~~-~ 132 (179)
-|.+.+.+.++..+|+-+..++..|-..|. .+.+..++.+....+... +| +...-+++..+.-.+.|.. |
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 488888899999999988888877655442 333333333322222211 11 1112233444445566666 7
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHH
Q 030356 133 VCLSWFLEFIPASNRGMWMVVISIFWT 159 (179)
Q Consensus 133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ 159 (179)
...-+=++..|.+.|.+.+..+-.-..
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhh
Confidence 677777889999999998887654443
No 286
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=71.75 E-value=19 Score=24.15 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356 113 NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF 164 (179)
Q Consensus 113 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 164 (179)
++..++...++.|++. ..+.+..++-...+++-|...|+-..--+++-..
T Consensus 96 ~~~~~~~S~~~Fg~gl--lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGL--LGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred chHHHHHHHHHHHHHH--HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 3444444444444332 2445566666778888899999877777666543
No 287
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=71.48 E-value=28 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.473 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGR 90 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~ 90 (179)
+.-+.+++.+++.+.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 445778899999999999999885
No 288
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=69.04 E-value=58 Score=26.10 Aligned_cols=98 Identities=13% Similarity=-0.017 Sum_probs=60.8
Q ss_pred hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhc
Q 030356 52 IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL---NYLSLVTLRGLVGIGL 128 (179)
Q Consensus 52 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~ 128 (179)
..++.|++.+|...+.+.-.+...++.++.-.-..+.|.|-....+.....++........ .....+-.-+..|+.+
T Consensus 40 vg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~ 119 (451)
T COG2233 40 VGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVY 119 (451)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3466899999999999999999999999877644456666666666555555554433222 2344444444444444
Q ss_pred CchhhHHH-HHHHhccccchhH
Q 030356 129 GSGPVCLS-WFLEFIPASNRGM 149 (179)
Q Consensus 129 g~~~~~~~-~~~~~~~~~~r~~ 149 (179)
-....... .+.+.+||-..|.
T Consensus 120 ~li~~~~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 120 FLISPIVKIRLARLFPPVVTGP 141 (451)
T ss_pred HHHHHHHHHHHHHhCCCceEEe
Confidence 33322223 6666677665554
No 289
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=68.58 E-value=22 Score=29.43 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
..+++-=-++.|++.... ....-+.=+-+|++-|+.+++++.+..++|..++..+...+...+
T Consensus 458 i~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 458 ILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555678888888776 555666667889999999999999999999999999988777655
No 290
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=64.54 E-value=1.8 Score=18.33 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhccCC
Q 030356 162 TIFEAALAWGNILLNS 177 (179)
Q Consensus 162 ~~~~~~i~~~~~~~~~ 177 (179)
.+++|++.|.++...+
T Consensus 3 ~iIaPi~VGvvl~l~~ 18 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFD 18 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHH
Confidence 5678888888765543
No 291
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=64.48 E-value=12 Score=27.90 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhh---------hccccchhH
Q 030356 34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFI---------SDNYGRRKG 93 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l---------~d~~G~r~~ 93 (179)
+-+.+-.....+..++-.+.++.+++++....++....+..++..++.|.. .||+|||..
T Consensus 25 GHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 25 GHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 334444444443333344556778898888898988999999998888644 469999875
No 292
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=64.11 E-value=71 Score=25.27 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHH
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWM 151 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~ 151 (179)
+...++...+.+++.+.. .......+ .+|+|.....+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytqavm 154 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQAVM 154 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHHHHH
Confidence 444455555666665554 33333333 45655544333
No 293
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=63.70 E-value=6.8 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=30.7
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWG 171 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 171 (179)
...-.|.|.+.+ ..+..-+.+.+| +......++-....-+.+..|-.+.-+
T Consensus 177 LAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~if 228 (241)
T PF11299_consen 177 LAMASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIF 228 (241)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777776 677777888887 555555555555555555555444443
No 294
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=62.37 E-value=74 Score=24.94 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=55.0
Q ss_pred cchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 030356 50 PAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA-FSLNYLSLVTLRGLVGIG 127 (179)
Q Consensus 50 ~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~ 127 (179)
|.+. +..|++++|...+.+...+...++.++..+-.-++|.|..+..+.....+...... ....+.......++.|+.
T Consensus 16 p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii 95 (406)
T TIGR03173 16 PLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLF 95 (406)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4443 34689988888888888888888888875333357777776655444333322211 112333333334444443
Q ss_pred cCchhhHHHHHHHhccccchhH
Q 030356 128 LGSGPVCLSWFLEFIPASNRGM 149 (179)
Q Consensus 128 ~g~~~~~~~~~~~~~~~~~r~~ 149 (179)
.-........+.+.+|+...|.
T Consensus 96 ~illg~~~~~l~~~iPp~v~G~ 117 (406)
T TIGR03173 96 VILLAPFFSKLVRFFPPVVTGT 117 (406)
T ss_pred HHHHHHHHHHHHHHCCcHHHHH
Confidence 3222223445667777655443
No 295
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.41 E-value=46 Score=20.90 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLG 96 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~ 96 (179)
..-.+.=+++..+-....||+.||| |.++.-++
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3344455556666666778999985 44444333
No 296
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=55.37 E-value=59 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchh
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGRRK 92 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~r~ 92 (179)
+.-+.++..+.+.+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 45577888899999999999988764
No 297
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=55.25 E-value=1.1e+02 Score=24.83 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI 97 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~ 97 (179)
|...+..++...+..++.+.+.+|+|-+....+.
T Consensus 322 G~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 322 GKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 5566667777777788899999999988766654
No 298
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=54.83 E-value=66 Score=24.94 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV 103 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~ 103 (179)
.-.+.+....++.++.++.+.+.|.+..++||-.....+.+....
T Consensus 308 Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~ 352 (390)
T KOG3097|consen 308 GVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLL 352 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 456789999999999999999999999999999988877655433
No 299
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=52.15 E-value=1.2e+02 Score=24.19 Aligned_cols=47 Identities=6% Similarity=0.056 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 030356 114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFE 165 (179)
Q Consensus 114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 165 (179)
+...++..++.|++.+.. .....+.+ .+|++. +..+..+.++++.++
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~ 153 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLT 153 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHH
Confidence 444455556666666555 33344433 455432 333444444444443
No 300
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=50.65 E-value=63 Score=25.17 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=44.3
Q ss_pred cchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHH
Q 030356 50 PAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS--A----FSLNYLSLVTLRG 122 (179)
Q Consensus 50 ~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~ 122 (179)
|.+..+ .|. ..+...+.+...+...+++++.+. +.|.|..+..+.....+..... + ...++.......+
T Consensus 22 P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~---~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 97 (389)
T PF00860_consen 22 PLILAAAFGL-DADTAALISATFLVSGIATLLQGL---PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVL 97 (389)
T ss_dssp HHTTTS------------HHHHHHHHHHHHHHHHH---HTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHH
T ss_pred HHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHh---cCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHH
Confidence 544444 576 555557778888888899998888 7787777765544444432211 1 1223344444445
Q ss_pred HHHhhcCch--hhHHHHHHHhccccchhHHHH
Q 030356 123 LVGIGLGSG--PVCLSWFLEFIPASNRGMWMV 152 (179)
Q Consensus 123 l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~ 152 (179)
+.|+..-.. ......+.+.+|+..++....
T Consensus 98 i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~ 129 (389)
T PF00860_consen 98 ISGILFILLGLTGLRKRLRRLFPPVVKGAVVL 129 (389)
T ss_dssp HHHHHHHHHHTT-SH-HHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHhChhheEeeEe
Confidence 555544333 122346778888877665443
No 301
>PLN02878 homogentisate phytyltransferase
Probab=48.37 E-value=1.1e+02 Score=22.80 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=38.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 030356 87 NYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGT 162 (179)
Q Consensus 87 ~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 162 (179)
|+|+|+...++..+..+.........-......-..+...+........-+=+...+.+.+....+.|+..|.+-.
T Consensus 195 ~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy 270 (280)
T PLN02878 195 RLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWKLFY 270 (280)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHHHHH
Confidence 6888888877776666655532222111111222223333332221111122344555777788888888776643
No 302
>COG2119 Predicted membrane protein [Function unknown]
Probab=47.40 E-value=95 Score=21.63 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG 105 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~ 105 (179)
+....++..++.+...++++|+..|.+-.++.++..+..
T Consensus 140 ~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 140 TLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344556677788888899999999998877766654444
No 303
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=46.96 E-value=1.5e+02 Score=23.95 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=40.1
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIPA-SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
..++.|+..... ...-..+.|.+|+ ++|...++-++...++...+..++++.+.+..|
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G 331 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG 331 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555 5555677888875 678999999888888888666666677776654
No 304
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=46.86 E-value=62 Score=19.32 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhccccc-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 030356 74 LLVGSYSWGFISDNYGR-------RKGLLGIAMLASVAGLLSAFSLNY 114 (179)
Q Consensus 74 ~~i~~~~~g~l~d~~G~-------r~~~~~~~~~~~~~~~~~~~~~~~ 114 (179)
.....+..+++.+|..+ ++.+.++.++...+.+++++.++.
T Consensus 31 ~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 31 ATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455556666666554 677777777777777777776653
No 305
>COG4769 Predicted membrane protein [Function unknown]
Probab=45.87 E-value=56 Score=22.27 Aligned_cols=52 Identities=17% Similarity=-0.015 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 68 SVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG 125 (179)
Q Consensus 68 ~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (179)
-++.+...+.+...-++..++|+|..=.++.... -++.+|..++.+.+++.+
T Consensus 80 Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~m------GaF~hNl~QLivas~Lv~ 131 (181)
T COG4769 80 FLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVM------GAFTHNLGQLIVASFLVF 131 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEeeeehhhH------HHHHHhHHHHHHHHHHHh
Confidence 3445556666667777888899777633332221 134455555555544433
No 306
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=44.71 E-value=1.6e+02 Score=23.50 Aligned_cols=71 Identities=17% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhccc-CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKSEW-NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
.+.++++......-.+.+....++.++ |-|-.-.+.-..+-.....+..++.|...|+..|+|++-..+++
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 333444544444445555555555554 33333334444444555667778889999999999987655543
No 307
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=43.43 E-value=60 Score=18.16 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=10.3
Q ss_pred hhHHHHHHHhccccchh
Q 030356 132 PVCLSWFLEFIPASNRG 148 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~r~ 148 (179)
-....+++|..+++++|
T Consensus 46 l~l~G~isE~i~~~Kgg 62 (63)
T PF06341_consen 46 LFLAGLISEFISKQKGG 62 (63)
T ss_pred HHHHHHHHHHHhhccCC
Confidence 44556777877764443
No 308
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=41.58 E-value=1.8e+02 Score=23.05 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH-
Q 030356 23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA- 101 (179)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~- 101 (179)
+++.....++++..+.-...........++ .|-+.-|.+.+.+.+.....+|+...-++.|.--.-+.+..=.++.
T Consensus 8 ~~alL~laVf~~aa~GlvyElal~tLatyL---lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgl 84 (508)
T COG4262 8 WRALLLLAVFVCAACGLVYELALGTLATYL---LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGL 84 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333 3556778899999999999999998888876533222211111111
Q ss_pred ------HHHHHHHHH--HHHHHHHHHHHHHHHhhcCch-hhHHHHHHH
Q 030356 102 ------SVAGLLSAF--SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLE 140 (179)
Q Consensus 102 ------~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~ 140 (179)
.+..+.++. .++-+.+++.-+++|.-.|.. |....+...
T Consensus 85 igg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 85 IGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred hccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111112221 234566777889999999987 877776655
No 309
>PRK08168 NADH dehydrogenase subunit L; Provisional
Probab=36.87 E-value=2.4e+02 Score=23.24 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=36.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIG 127 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (179)
+..|.-..-....+..++..+...-.+++.++-++++ +.....+...+......++|...++++.-+.++.
T Consensus 65 ~~vD~lS~~~~~lv~~v~~~v~~ys~~Ym~~~~~~~~-f~~llll~l~g~~~lv~S~dL~~l~v~wEl~sL~ 135 (516)
T PRK08168 65 LEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRR-YVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLA 135 (516)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhccCccccH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444433334444444444455445555543333333 3333344444555566788888887776665543
No 310
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.16 E-value=1.1e+02 Score=18.98 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=8.8
Q ss_pred Hhhhhc-cccchhHHHHHHHH
Q 030356 81 WGFISD-NYGRRKGLLGIAML 100 (179)
Q Consensus 81 ~g~l~d-~~G~r~~~~~~~~~ 100 (179)
.|...| +++-++.+.+.+++
T Consensus 62 lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 62 VGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHhhcCCCcHHHHHHHH
Confidence 333333 46655544443333
No 311
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=35.82 E-value=1.8e+02 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=14.5
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHhccccch
Q 030356 118 VTLRGLVGIGLGSGPVCLSWFLEFIPASNR 147 (179)
Q Consensus 118 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 147 (179)
-..|.+.|+-.-...+.++.+.-.||++++
T Consensus 23 ~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~ 52 (287)
T PF07760_consen 23 PPLRVILGFPFVLFLPGYALVAALFPRKHD 52 (287)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHccCcCC
Confidence 344555554442224455556666664443
No 312
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=35.04 E-value=1e+02 Score=18.54 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhccccch
Q 030356 69 VVFAGLLVGSYSWGFISDNYGRR 91 (179)
Q Consensus 69 ~~~~~~~i~~~~~g~l~d~~G~r 91 (179)
.......+-+.+.|.+.||..||
T Consensus 83 ~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555667788889999998775
No 313
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.82 E-value=1.8e+02 Score=21.15 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHH
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGRRKGLLG 96 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~ 96 (179)
.+.+.+++++.....-.+.-|+||||.+-.
T Consensus 34 ns~yyfv~Il~atlfill~Ik~~~kwI~r~ 63 (277)
T COG3389 34 NSVYYFVYILVATLFILLAIKLGRKWIFRG 63 (277)
T ss_pred CceeeehhHHHHHHHHHhheeecceeeehh
Confidence 445666677777777788889999986554
No 314
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=34.69 E-value=1.4e+02 Score=19.90 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=26.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH
Q 030356 55 EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLG 96 (179)
Q Consensus 55 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~ 96 (179)
+.|+++...-....+..+.-.++-++...++|+.+.-..+.+
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 356666555555555666666777777777888777665543
No 315
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=34.63 E-value=89 Score=17.60 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=33.4
Q ss_pred cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch
Q 030356 50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR 91 (179)
Q Consensus 50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r 91 (179)
|.+.--+|.+..+++.+.....+...+-..+..++-||+=+|
T Consensus 23 P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 23 PLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444677888888888888888889999999999997654
No 316
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=34.61 E-value=1.4e+02 Score=21.49 Aligned_cols=56 Identities=16% Similarity=0.029 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356 70 VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126 (179)
Q Consensus 70 ~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (179)
..+|..+|..+..++.||+.+......+.....++.-...-.++. ...+...+.|.
T Consensus 11 Il~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~-~~vi~slvlG~ 66 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNP-LLVILSLVLGT 66 (226)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCcc-HHHHHHHHHHH
Confidence 455666777777777777766666666666555554433323333 33344444443
No 317
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=34.17 E-value=2.1e+02 Score=21.85 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356 64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109 (179)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~ 109 (179)
.+.....++|..++....+++.|++|....+.++.+...++.+.+.
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 4777888888888888999999999988888777777766665544
No 318
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=33.58 E-value=1.4e+02 Score=19.44 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFIS 85 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~ 85 (179)
.+..+.++......++....+++..+=.+...+--|=...+.+.+.+-++..|.+.
T Consensus 47 Fl~AG~vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNilMYaIPy~L~Ala~GFlv 102 (141)
T PRK13743 47 FLTAGIVLWVIMHSIFDACIDSWKADPELNNFRYMWNILMYVIPYTLWALAAGFLV 102 (141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 33334444444555555556666655444444555555556666555555555443
No 319
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=30.94 E-value=81 Score=20.74 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHhccccchhHHHHHHHHHHHH
Q 030356 138 FLEFIPASNRGMWMVVISIFWTL 160 (179)
Q Consensus 138 ~~~~~~~~~r~~~~~~~~~~~~~ 160 (179)
+.|++|+..|....+.++.....
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~ 82 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSA 82 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHH
Confidence 47888988888777776554443
No 320
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=30.25 E-value=1.4e+02 Score=18.60 Aligned_cols=12 Identities=8% Similarity=-0.172 Sum_probs=6.2
Q ss_pred hhHHHHHHHhcc
Q 030356 132 PVCLSWFLEFIP 143 (179)
Q Consensus 132 ~~~~~~~~~~~~ 143 (179)
+...++..|...
T Consensus 68 TTFSTf~~e~~~ 79 (108)
T PRK14229 68 TTFSTLNDELQR 79 (108)
T ss_pred ccHHHHHHHHHH
Confidence 445555555543
No 321
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=30.07 E-value=1.9e+02 Score=20.00 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356 69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 69 ~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
...+...++.++.-.+..|.++|.++.+..++.++...++
T Consensus 36 ~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~ 75 (186)
T PF09605_consen 36 MPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLM 75 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3456666788888889999999998877766666554444
No 322
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=29.93 E-value=27 Score=20.50 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=18.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR 91 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r 91 (179)
+++..-+...+.+...++..+.-.=.-+++||+|-+
T Consensus 9 ~~lnki~~~~i~a~LvV~ll~~~~NIY~Ia~k~GI~ 44 (91)
T PF12173_consen 9 FNLNKIESFCIWAVLVVALLITTANIYWIADKFGIH 44 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHccCceEEEeccccee
Confidence 444444444444444444444434445678888755
No 323
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=29.09 E-value=2e+02 Score=21.72 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhh-hccccchhHHHHHHHHHHHHHHHH
Q 030356 31 AGLGLVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFI-SDNYGRRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l-~d~~G~r~~~~~~~~~~~~~~~~~ 108 (179)
+.+.++..-....+-..+++.+ .++++.+.+...++-.+..+....-+.+..-. -.+...|..+..+..++..+...+
T Consensus 206 iAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiwifcga~i 285 (412)
T KOG4830|consen 206 IALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIWIFCGAVI 285 (412)
T ss_pred HHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHHHHhhhhe
Confidence 3333444444333333344443 45677777766665555555444333321111 112222333445555554444333
Q ss_pred HHH-HHH-HHHHHHHHHHHhhcCch-hhHHHHHHHhcc
Q 030356 109 AFS-LNY-LSLVTLRGLVGIGLGSG-PVCLSWFLEFIP 143 (179)
Q Consensus 109 ~~~-~~~-~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~ 143 (179)
.+- +++ ..+++..+++|+..+.. ....++.++...
T Consensus 286 lLlpr~i~symyAisvfIGIAnAimlvtslsitavli~ 323 (412)
T KOG4830|consen 286 LLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLIN 323 (412)
T ss_pred eecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 222 22445566778777766 434444444433
No 324
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=28.55 E-value=3e+02 Score=21.81 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHhhcCchhhH---H
Q 030356 63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV-AGLLSAF---SLNYLSLVTLRGLVGIGLGSGPVC---L 135 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~---~ 135 (179)
.+-+..-.++..++.++-.--+.|..++--++.+.-.++.+ ......+ -++|..-..+....|.+.|..+.. .
T Consensus 278 I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm 357 (398)
T TIGR00210 278 IGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANM 357 (398)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHH
Confidence 45555666777777777777777777766655555444333 2222222 346666666666777777776333 3
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 136 SWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 136 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
..+.|.+.+..++ ..+-|+++++++|..
T Consensus 358 ~av~~~yg~s~~a-------------f~ivPlvgaf~id~~ 385 (398)
T TIGR00210 358 QAVTERFGPSHQA-------------FIVVPLVGAFFIDII 385 (398)
T ss_pred HHHHhccCCCCcc-------------eehhhhHHHHHHHHh
Confidence 4456667666665 356678877777653
No 325
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=28.21 E-value=2.2e+02 Score=20.97 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCchhHHHHHHHHHHHHH-----HHHHHHhhhhccccchhHHHHHHH
Q 030356 58 LSPAQETLLTSVVFAGLL-----VGSYSWGFISDNYGRRKGLLGIAM 99 (179)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~-----i~~~~~g~l~d~~G~r~~~~~~~~ 99 (179)
+.....+|..+..+..-. -|+|..|.+.|-.+--+++++..+
T Consensus 198 ~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~~~vlW~~i~l~~ 244 (256)
T PF14494_consen 198 FEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDFAGVLWVLIALVA 244 (256)
T ss_pred cccchHHHHHHHHHhhhhHhccCCCCCCCcceEeeeehHHHHHHHHH
Confidence 344455555543333222 378899999999987776654433
No 326
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=27.97 E-value=3.1e+02 Score=21.73 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=28.6
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY 88 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 88 (179)
... ++++|...+.+...+...++.++.+....+.
T Consensus 31 ~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~ 64 (415)
T TIGR00801 31 LAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQ 64 (415)
T ss_pred ccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 345 8889999999999999999999998877654
No 327
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=26.61 E-value=2.1e+02 Score=19.42 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 030356 36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD 86 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d 86 (179)
..+-.....+....+.+..+ +.+..+.........++........+.+.+
T Consensus 109 ~~NPk~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 158 (191)
T PF01810_consen 109 LLNPKAILFWLAVFPQFISP-EYSSTQFLVFILGIFLGSLLWFLLLALLGS 158 (191)
T ss_pred HHhHHHHHHHHHhhhcccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443344444555443 334444444444444444443333443333
No 328
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=25.88 E-value=2.6e+02 Score=20.15 Aligned_cols=46 Identities=7% Similarity=-0.096 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 71 FAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLS 116 (179)
Q Consensus 71 ~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (179)
.+|..+|..+..++.||+-+-.+-..+.....++.-....++|...
T Consensus 13 l~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~ 58 (228)
T COG1811 13 LIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIM 58 (228)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 3455566666666777765555555555555555444444455443
No 329
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=25.83 E-value=19 Score=27.52 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhc
Q 030356 63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFI 142 (179)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~ 142 (179)
.+.+.-.-.+-..+-.+......||+-.-.=..+..++.+.+.++.+++++.+.-+.+..+..++.|..-+..--.+..+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 34455555566666777777788876543334445566677777778888888777777777777766533333344445
Q ss_pred cccc
Q 030356 143 PASN 146 (179)
Q Consensus 143 ~~~~ 146 (179)
|+..
T Consensus 144 ~~~~ 147 (409)
T KOG3880|consen 144 PSIV 147 (409)
T ss_pred CCce
Confidence 5433
No 330
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=25.57 E-value=4e+02 Score=22.24 Aligned_cols=99 Identities=18% Similarity=0.138 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch--hhHHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG--PVCLSWFL 139 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~--~~~~~~~~ 139 (179)
+.++...++.+|...|.-+...+.+ .|-+..+ .+.++..+..+......-+..=+=.....|...|.. ++....+.
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLFL-LGIVVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAVL 528 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHH
Confidence 4677788888888888877777744 5554443 344443333322221111110010123455555554 66677778
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHH
Q 030356 140 EFIPASNRGMWMVVISIFWTLGTIFE 165 (179)
Q Consensus 140 ~~~~~~~r~~~~~~~~~~~~~g~~~~ 165 (179)
|..+.+.-..+ |...+.+|.++=
T Consensus 529 ~~~~~~~~~~g---Ya~~Yp~~~i~~ 551 (562)
T TIGR03802 529 ERAGSSVPALG---YTITYALGNVLL 551 (562)
T ss_pred HhcCCCCcccc---hHhHHHHHHHHH
Confidence 87654433322 445555554443
No 331
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=25.46 E-value=1.9e+02 Score=18.54 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=18.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFI 84 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l 84 (179)
-|++.+|.++...+..+..++.+++..++
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~la~~ 47 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLPLALL 47 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888777766666655555555544
No 332
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=25.44 E-value=3.3e+02 Score=21.32 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHhhhcchhcccCCCchhHHHHHHHHHHHHH---HHHHHHhhhhccccchhHHHHHHHH
Q 030356 44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLL---VGSYSWGFISDNYGRRKGLLGIAML 100 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---i~~~~~g~l~d~~G~r~~~~~~~~~ 100 (179)
..........+++|.++.-.|.+.. .++.. +.+.-.. ..||..+---+.+|..+
T Consensus 240 ~lv~sIe~~v~~~Glp~afiGvIIa--iv~~apE~~tAV~aA-~kNkmq~slnialGSsL 296 (366)
T PRK10599 240 MNASPLETLLTSMNAPVAFTGFLVA--LLILSPEGLGALKAV-LNNQVQRAMNLFFGSVL 296 (366)
T ss_pred HhHhhHHHHHHhcCCCHHHHHHHHH--HHHcchhHHHHHHHH-HcCchHHHHHHHHHHHH
Confidence 3344456777889999998887653 33333 3333322 45666554444444433
No 333
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=25.28 E-value=1.4e+02 Score=19.36 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.2
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch
Q 030356 53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR 91 (179)
Q Consensus 53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r 91 (179)
.+.++.-..+...+.....++..+.....|++.|+.-|+
T Consensus 79 m~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~ 117 (128)
T COG1380 79 MNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLIRW 117 (128)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677777777888888888888876433
No 334
>PRK11375 allantoin permease; Provisional
Probab=25.17 E-value=3.2e+02 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.020 Sum_probs=17.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 030356 56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG 89 (179)
Q Consensus 56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G 89 (179)
+|++.-|.-....+..+...+..-+.|...-|.|
T Consensus 55 ~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G 88 (484)
T PRK11375 55 LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG 88 (484)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 5677666655554444444444444455544444
No 335
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=24.44 E-value=2.8e+02 Score=20.03 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=34.3
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
+..+.+..+.+......+.... +....+.+|.+.+.....+.....++..
T Consensus 124 ~~~~~s~~~ig~~~g~if~i~i---l~ss~i~r~~~~~~p~~LG~~Mi~~Gly 173 (224)
T PF09930_consen 124 PSIGLSGWEIGLVLGLIFFILI---LLSSFIFRRLKKPYPIILGNFMIFLGLY 173 (224)
T ss_pred HhcCchHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4567788888877766655555 6667777888877777777666555543
No 336
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.17 E-value=99 Score=14.80 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 030356 69 VVFAGLLVGSYSWGFISDN 87 (179)
Q Consensus 69 ~~~~~~~i~~~~~g~l~d~ 87 (179)
...++.++.+++.+|+-+|
T Consensus 16 AP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 16 APIIAGIIASLIVGWLRNR 34 (35)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3455666677777777654
No 337
>TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein. This alignment models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat.
Probab=22.89 E-value=3.4e+02 Score=20.46 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=24.0
Q ss_pred HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh
Q 030356 46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK 92 (179)
Q Consensus 46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~ 92 (179)
......+.+.+|+++...|... ..++...--.+....+-|.|+..
T Consensus 190 v~~~~~i~~~lgi~~~~~g~tl--~a~~ts~PE~~~~i~a~~~g~~~ 234 (307)
T TIGR00367 190 VDGAVQIAEIFGISEKIIGLTL--LAIGTSLPELVVSVAAARKGLGD 234 (307)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH--HHHHcccHHHHHHHHHHHcCCCc
Confidence 3344667788999998887432 23333333333333343445433
No 338
>COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=22.67 E-value=4.8e+02 Score=22.13 Aligned_cols=69 Identities=23% Similarity=0.207 Sum_probs=46.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 128 (179)
|.-......-+..++..+--.-.|++.|..|++|-+.. ..+...++.....++|..+++++.=+.|++.
T Consensus 73 D~Ls~lm~~lVt~vg~LI~iYsi~YM~~d~~~~RFfa~-l~lF~~sMl~lVlSdNll~l~~~WE~~gl~S 141 (606)
T COG1009 73 DGLSLLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAY-LLLFTGSMLGLVLSDNLLLLFVFWELTGLAS 141 (606)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCCCcChHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 33344556666778888888999999988886664432 3333445555667889888888776655543
No 339
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=21.95 E-value=56 Score=20.35 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+....|-....+.-.+++.++.+++..|+.-.-+.=..+..+.
T Consensus 53 ~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~ic 95 (109)
T COG1742 53 PAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAIC 95 (109)
T ss_pred CchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHH
Confidence 3445677788888889999999999999876655544454443
No 340
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.64 E-value=2.9e+02 Score=19.19 Aligned_cols=36 Identities=6% Similarity=-0.015 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356 69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104 (179)
Q Consensus 69 ~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~ 104 (179)
...+...++.++.-.+..|.+++.++.+-.++.++.
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~ 73 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLL 73 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHH
Confidence 345666677777788889999888877665555443
No 341
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=21.55 E-value=4e+02 Score=20.81 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFISDNY 88 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 88 (179)
.-.|++.+.+..+.++|+.+..++..|-
T Consensus 278 ~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 278 LPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3479999999999999999997766544
No 342
>PRK10692 hypothetical protein; Provisional
Probab=21.34 E-value=2e+02 Score=17.28 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 030356 90 RRKGLLGIAMLASVAGLLS 108 (179)
Q Consensus 90 ~r~~~~~~~~~~~~~~~~~ 108 (179)
||...+++-.++.++.+.+
T Consensus 3 Rk~a~~~GN~lMglGmv~M 21 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVM 21 (92)
T ss_pred chhhHHHhhHHHHHHHHHH
Confidence 4555555655555555444
No 343
>PRK11469 hypothetical protein; Provisional
Probab=21.17 E-value=3e+02 Score=19.15 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHH
Q 030356 80 SWGFISDNYGRRKGLLGIAMLASVAGL 106 (179)
Q Consensus 80 ~~g~l~d~~G~r~~~~~~~~~~~~~~~ 106 (179)
+..++.+++|+|.-++-+.++..++.-
T Consensus 154 lG~~~g~~~g~~a~~lgG~iLI~iGi~ 180 (188)
T PRK11469 154 VGRFIGSIIGKKAEILGGLVLIGIGVQ 180 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567776666666666555543
No 344
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=20.59 E-value=3.4e+02 Score=19.57 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=27.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356 58 LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104 (179)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~ 104 (179)
.+....-.......++...-.++.=+++.|+|....+.++......+
T Consensus 126 ~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~~~si~ig~~g~l~~ 172 (248)
T TIGR03733 126 LPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGMGASIGIGIVGTLMA 172 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 34333333333345555556666678899999877777766554333
No 345
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=20.43 E-value=2.5e+02 Score=18.05 Aligned_cols=42 Identities=7% Similarity=-0.048 Sum_probs=18.2
Q ss_pred hhHHHHHHHhccc-cchhHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 030356 132 PVCLSWFLEFIPA-SNRGMWMV-VISIFWTLGTIFEAALAWGNI 173 (179)
Q Consensus 132 ~~~~~~~~~~~~~-~~r~~~~~-~~~~~~~~g~~~~~~i~~~~~ 173 (179)
+...++..|.+.- +++....+ .|.....+++.++..++..+.
T Consensus 79 TTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~~G~~~~ 122 (127)
T PRK14206 79 TTFSSFSLQTLNLARDGDWLRAGGNVVLSVVFCLLAVWLGHVAA 122 (127)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332 11222223 344444455555555554443
No 346
>PRK03612 spermidine synthase; Provisional
Probab=20.13 E-value=5e+02 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-hccccchhHH
Q 030356 61 AQETLLTSVVFAGLLVGSYSWGFI-SDNYGRRKGL 94 (179)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~g~l-~d~~G~r~~~ 94 (179)
...+.+.....+|.++|++..+.+ .+.+|-....
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~ 179 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTA 179 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHH
Confidence 446677777777777777776655 3467754443
No 347
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=20.05 E-value=2.8e+02 Score=18.51 Aligned_cols=51 Identities=12% Similarity=-0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL 123 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
...++++..+.+...-.+..|..||+.=..+... .-+.++|..++.+..++
T Consensus 67 ~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giSi------~Gai~HN~gQl~va~~i 117 (148)
T PF07456_consen 67 SFLFSLAGGLLSLLVMALLKKLFKKKFSLIGISI------AGAIAHNIGQLIVASLI 117 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3556677777777777888888765533322221 23456677777666554
Done!