Query 030356
Match_columns 179
No_of_seqs 201 out of 1377
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 20:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.6E-24 5.3E-29 165.6 14.3 154 24-177 24-182 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 2.4E-23 8.1E-28 159.5 12.6 155 22-177 24-183 (451)
3 4gc0_A D-xylose-proton symport 99.9 1.6E-21 5.4E-26 151.1 14.7 154 22-175 8-188 (491)
4 2gfp_A EMRD, multidrug resista 99.9 5.4E-21 1.9E-25 143.5 13.7 146 30-175 4-150 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 7.1E-20 2.4E-24 141.9 13.7 132 46-177 34-174 (491)
6 2xut_A Proton/peptide symporte 99.8 1.3E-18 4.4E-23 135.9 13.5 133 45-177 32-176 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 1.1E-15 3.9E-20 116.8 13.7 143 35-177 261-411 (451)
8 3o7q_A L-fucose-proton symport 99.6 5.5E-15 1.9E-19 112.7 12.7 123 52-177 286-409 (438)
9 2cfq_A Lactose permease; trans 99.6 1.3E-14 4.3E-19 110.7 11.0 117 60-176 258-376 (417)
10 2cfq_A Lactose permease; trans 99.5 3.5E-14 1.2E-18 108.3 5.3 132 43-174 24-163 (417)
11 2gfp_A EMRD, multidrug resista 99.5 4.4E-14 1.5E-18 105.9 4.8 140 33-175 206-352 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2E-13 6.9E-18 105.7 7.1 130 46-175 303-448 (491)
13 4gc0_A D-xylose-proton symport 99.4 6.3E-12 2.2E-16 97.2 12.7 138 35-172 286-429 (491)
14 2xut_A Proton/peptide symporte 98.7 1.5E-09 5.3E-14 84.6 0.3 113 62-174 336-466 (524)
15 2g9p_A Antimicrobial peptide l 65.5 2.2 7.5E-05 17.7 0.7 14 80-93 2-15 (26)
16 2kv5_A FST, putative uncharact 40.2 5 0.00017 18.4 -0.3 15 161-175 6-20 (33)
17 4dve_A Biotin transporter BIOY 37.8 91 0.0031 20.9 6.3 25 67-91 99-123 (198)
18 1cmk_I CAMP-dependent protein 29.0 9.8 0.00033 16.4 -0.2 10 85-94 9-18 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=1.6e-24 Score=165.63 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356 24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV 103 (179)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~ 103 (179)
+++....+++..+..+++........|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 34555566667778888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC
Q 030356 104 AGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI-LLNS 177 (179)
Q Consensus 104 ~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~-~~~~ 177 (179)
+.+++ .++++++.+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.+++++. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988 77889999999999999999998 889999999999999999999999999999999999999988 5443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=2.4e-23 Score=159.52 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA 101 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~ 101 (179)
+.+++....+++..+....+........|.+.+++ .++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 45566677777778888888888888899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356 102 SVAGLLSAF----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 102 ~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
+++.+++++ +++++.+++.|++.|++.+.. +...+++.|++|+++|++++++++....+|..++|.+++++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 899999999999999999988 889999999999999999999999999999999999999987655
Q ss_pred C
Q 030356 177 S 177 (179)
Q Consensus 177 ~ 177 (179)
+
T Consensus 183 g 183 (451)
T 1pw4_A 183 N 183 (451)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=1.6e-21 Score=151.10 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCC--------CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Q 030356 22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNL--------SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG 93 (179)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~ 93 (179)
++.+.+.+..+++.+..++|...++...|.+.++++. +..+.+++.+.+.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3455666666778888899998888888887776532 23457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH
Q 030356 94 LLGIAMLASVAGLLSA------------------FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI 154 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~ 154 (179)
+.++.++..++.++++ .++|+..+++.|++.|++.|.. +..+.++.|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999888 4789999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 030356 155 SIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 155 ~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+....+|..+++.++..+...
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhcchhhccc
Confidence 999999999998888877654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=5.4e-21 Score=143.53 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356 30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109 (179)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~ 109 (179)
.+++..+..........+..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+....+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 44555666777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
++++++.+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.+++++.+.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999999999988 88999999999999999999999999999999999999988764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=7.1e-20 Score=141.90 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=120.2
Q ss_pred Hhhhcchhcc-----cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 46 SFIGPAIKSE-----WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLNYLSLVT 119 (179)
Q Consensus 46 ~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (179)
....+++.++ +|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555554 99999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 120 LRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
.|++.|++.+.. +...+++.|++|+++ |+.++++++....+|..++|.+++++.+..+
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999988 889999999999988 7788888999999999999999999887554
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=1.3e-18 Score=135.92 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=119.7
Q ss_pred HHhhhcchhcccC------CCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356 45 LSFIGPAIKSEWN------LSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSL-NYLS 116 (179)
Q Consensus 45 ~~~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~ 116 (179)
.....+++.+++| .++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++.+++ +++.
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3444456677888 9999999999999999999999999999999 999999999999999999999988 9999
Q ss_pred HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH---HHHHHHHHHHHHHHHHHHHhccCC
Q 030356 117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV---ISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+++.|++.|++.+.. +...+++.|++|+++|+++.+. ++....+|..++|.+++++.+..+
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998 8899999999999999876666 899999999999999998886543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=1.1e-15 Score=116.83 Aligned_cols=143 Identities=15% Similarity=0.036 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHH-HHHHHHHH
Q 030356 35 LVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLGIAMLAS-VAGLLSAF 110 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~~~~~~~-~~~~~~~~ 110 (179)
.+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 334444444444555655555 899999999999999999999999999999999 99999888776665 55555554
Q ss_pred H--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 030356 111 S--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILLNS 177 (179)
Q Consensus 111 ~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~ 177 (179)
. .+...+.+..++.|++.+.. +....++.|.+|+++|+++.++++....+ |..++|.+.+++.+..+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 35666777788899988877 77889999999999999999999999999 99999999999988754
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.62 E-value=5.5e-15 Score=112.69 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=104.7
Q ss_pred hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356 52 IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG 131 (179)
Q Consensus 52 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 131 (179)
+.+.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++...+. ..++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHH
Confidence 3444699999999999999999999999999999999999999999988888888777776665444 347888888888
Q ss_pred -hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356 132 -PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177 (179)
Q Consensus 132 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 177 (179)
+...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 88889989999966 888888877 566999999999999988755
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.58 E-value=1.3e-14 Score=110.67 Aligned_cols=117 Identities=18% Similarity=0.087 Sum_probs=97.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356 60 PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWF 138 (179)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~ 138 (179)
..+.++..++..++..++.++.|+++||+|||+++..+..+.++..+...+.++...+.+..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888899999999999999999999998888887777666666666666667777777776655 6667899
Q ss_pred HHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccC
Q 030356 139 LEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLN 176 (179)
Q Consensus 139 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~ 176 (179)
.|.+|++.|+++.++ ++....+|..++|.+++++.+..
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 999999999999999 58889999999999999887643
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.47 E-value=3.5e-14 Score=108.25 Aligned_cols=132 Identities=17% Similarity=0.053 Sum_probs=90.8
Q ss_pred HHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH---HHHHHHHHH-HH
Q 030356 43 MILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL---LSAFSLNYL-SL 117 (179)
Q Consensus 43 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 117 (179)
....++.|. +.+++|.|+.+.+++.+...++..++++++|+++||+|||++++.+..+.++... ...+.+... ..
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444 5566899999999999999999999999999999999999999988777654321 112222211 12
Q ss_pred HHHHHHHHhhcCch-hhHHHHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 118 VTLRGLVGIGLGSG-PVCLSWFLEFIPA--SNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
...+.+.|++.+.. +.......++.++ ++|+...+.......+|..++|.+++++.+
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455656555544 3334444444433 345666777777788899999999998875
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.45 E-value=4.4e-14 Score=105.86 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH-HHHHHH--HH
Q 030356 33 LGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML-ASVAGL--LS 108 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~-~~~~~~--~~ 108 (179)
+..+.............|.+.++ +|.++.+.+.+.+...++..++.++.+++.||++++. ..+... ...+.. ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIP 283 (375)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33344444445555556666555 8999999999999999999999999999999999833 222222 222221 22
Q ss_pred HH--HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 109 AF--SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 109 ~~--~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
.. .++.+.+.+..++.|++.+.. +....++.|..| ++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22 236666677788889988887 888999999998 8999999999999999999999888877543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.43 E-value=2e-13 Score=105.66 Aligned_cols=130 Identities=18% Similarity=0.046 Sum_probs=102.8
Q ss_pred Hhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH-----HHHHHHHHHHHHHHHHH-------
Q 030356 46 SFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL-----GIAMLASVAGLLSAFSL------- 112 (179)
Q Consensus 46 ~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~-----~~~~~~~~~~~~~~~~~------- 112 (179)
....+.+. +.++.+..+.++..+...++..++.++.+++.||+|||+... .+..+.+++.++.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33334444 446767677888888999999999999999999999987654 66666666666555543
Q ss_pred --HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356 113 --NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL 175 (179)
Q Consensus 113 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 175 (179)
+...+.+..++.|++.+.. +....++.|.+|+++|+++.++++....+|..++|.+.+++.+.
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566777788899998887 88899999999999999999999999999999999999887764
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.38 E-value=6.3e-12 Score=97.18 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--
Q 030356 35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-- 112 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-- 112 (179)
.+...........+.+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+......
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 333444445555666778888888888888888888999999999999999999999999988888777766554321
Q ss_pred ---HHHHH-HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356 113 ---NYLSL-VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN 172 (179)
Q Consensus 113 ---~~~~~-~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 172 (179)
+...+ ....+..+...+..+..+.+.+|.+|.+.|++++++.+....+++.+++.+...+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112 2222233333333377788999999999999999999988888888877665443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.72 E-value=1.5e-09 Score=84.56 Aligned_cols=113 Identities=10% Similarity=0.070 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh----ccccch----hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 030356 62 QETLLTSVVFAGLLVGSYSWGFIS----DNYGRR----KGLLGIAMLASVAGLLSAFS---------LNYLSLVTLRGLV 124 (179)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~G~r----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 124 (179)
..+.+.....++..+..++.+++. ||.|+| +.+..+.++.+++.++..+. .+.+.+.+..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777888877765 555432 45666777776666655543 2556667778899
Q ss_pred HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356 125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174 (179)
Q Consensus 125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~ 174 (179)
|++.+.. +....++.|..|+++|++++++++....+|..++|.+.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998888 8888999999999999999999999999999999999998876
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=65.46 E-value=2.2 Score=17.70 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=10.8
Q ss_pred HHhhhhccccchhH
Q 030356 80 SWGFISDNYGRRKG 93 (179)
Q Consensus 80 ~~g~l~d~~G~r~~ 93 (179)
+.|.+..|+|||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999853
No 16
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=40.15 E-value=5 Score=18.43 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcc
Q 030356 161 GTIFEAALAWGNILL 175 (179)
Q Consensus 161 g~~~~~~i~~~~~~~ 175 (179)
-.+++|++.|.++..
T Consensus 6 ~~IIaPivVGvvl~L 20 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356788888877654
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=37.79 E-value=91 Score=20.95 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccccch
Q 030356 67 TSVVFAGLLVGSYSWGFISDNYGRR 91 (179)
Q Consensus 67 ~~~~~~~~~i~~~~~g~l~d~~G~r 91 (179)
+.-+.++..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4456788888999999999987543
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=29.00 E-value=9.8 Score=16.40 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=7.5
Q ss_pred hccccchhHH
Q 030356 85 SDNYGRRKGL 94 (179)
Q Consensus 85 ~d~~G~r~~~ 94 (179)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 6888888754
Done!