Query 030357
Match_columns 179
No_of_seqs 108 out of 123
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 12:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4210 Nuclear localization s 96.7 0.00038 8.2E-09 60.6 -0.3 54 74-131 115-169 (285)
2 KOG3426 NADH:ubiquinone oxidor 15.6 43 0.00094 27.3 -0.4 9 91-99 114-122 (124)
3 PHA02078 hypothetical protein 10.5 92 0.002 22.3 0.1 16 77-92 22-37 (54)
4 PF15341 SLX9: Ribosome biogen 9.7 1.4E+02 0.003 22.7 0.8 16 73-88 42-57 (121)
5 PLN00017 photosystem I reactio 8.6 1.3E+02 0.0027 23.5 0.2 9 83-91 80-88 (90)
6 KOG3704 Heparan sulfate D-gluc 8.4 2.9E+02 0.0062 26.0 2.4 38 71-108 270-309 (360)
7 PRK15450 signal transduction p 8.3 1.8E+02 0.0039 22.5 0.8 20 72-91 24-43 (85)
8 PF02994 Transposase_22: L1 tr 7.8 84 0.0018 28.5 -1.2 18 92-109 321-338 (370)
9 PF14268 YoaP: YoaP-like 7.5 1.4E+02 0.003 20.1 -0.0 16 85-100 15-31 (44)
10 KOG4210 Nuclear localization s 7.1 2.1E+02 0.0047 25.2 0.9 62 74-139 70-133 (285)
No 1
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.68 E-value=0.00038 Score=60.59 Aligned_cols=54 Identities=28% Similarity=0.204 Sum_probs=46.5
Q ss_pred CCCcchHHHHHhcccccCcccccccccccccccccCCC-hhhhhhccccCCCCchhhhc
Q 030357 74 GPLYEFSELMAQLPIKRGLSKFYQGKSQSFTSLASVKN-IEDLAKMNIKGSHYYRMKMK 131 (179)
Q Consensus 74 GpL~~m~sL~~~LPiKRGLSkfY~GKSkSFtsLa~v~s-veDLaK~e~K~~~Py~kkrK 131 (179)
.+...|+.|++.||+|||++++|.||+++|++|+.+.. +.+..+.++ |.+.+|+
T Consensus 115 ~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~----dl~~~~~ 169 (285)
T KOG4210|consen 115 RVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK----DLNTRRG 169 (285)
T ss_pred cccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC----ccccccc
Confidence 57778999999999999999999999999999999987 788888777 6554443
No 2
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=15.65 E-value=43 Score=27.31 Aligned_cols=9 Identities=67% Similarity=0.977 Sum_probs=7.3
Q ss_pred Ccccccccc
Q 030357 91 GLSKFYQGK 99 (179)
Q Consensus 91 GLSkfY~GK 99 (179)
=|||||+|+
T Consensus 114 FLskF~~g~ 122 (124)
T KOG3426|consen 114 FLSKFYTGN 122 (124)
T ss_pred HHHHHhccC
Confidence 389999986
No 3
>PHA02078 hypothetical protein
Probab=10.54 E-value=92 Score=22.27 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=14.3
Q ss_pred cchHHHHHhcccccCc
Q 030357 77 YEFSELMAQLPIKRGL 92 (179)
Q Consensus 77 ~~m~sL~~~LPiKRGL 92 (179)
+++++||.-+|+-|||
T Consensus 22 ySL~~ienMmP~ER~I 37 (54)
T PHA02078 22 YSLHELENMMPWEREI 37 (54)
T ss_pred CCHHHHHHHhHHHHHH
Confidence 6889999999999986
No 4
>PF15341 SLX9: Ribosome biogenesis protein SLX9
Probab=9.70 E-value=1.4e+02 Score=22.70 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=13.6
Q ss_pred CCCCcchHHHHHhccc
Q 030357 73 GGPLYEFSELMAQLPI 88 (179)
Q Consensus 73 ~GpL~~m~sL~~~LPi 88 (179)
.+-.++|++|.++||-
T Consensus 42 k~l~~dl~~L~~aLp~ 57 (121)
T PF15341_consen 42 KKLVGDLDSLLDALPE 57 (121)
T ss_pred hccccchHHHHHHHHH
Confidence 3556799999999998
No 5
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=8.62 E-value=1.3e+02 Score=23.51 Aligned_cols=9 Identities=56% Similarity=0.970 Sum_probs=6.6
Q ss_pred HHhcccccC
Q 030357 83 MAQLPIKRG 91 (179)
Q Consensus 83 ~~~LPiKRG 91 (179)
.+.|||++|
T Consensus 80 ~d~LPI~~G 88 (90)
T PLN00017 80 KDALPIKKG 88 (90)
T ss_pred ccccccccC
Confidence 456888887
No 6
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=8.38 E-value=2.9e+02 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=33.5
Q ss_pred CCCCCCcchHHHHHhcccccCc--cccccccccccccccc
Q 030357 71 SNGGPLYEFSELMAQLPIKRGL--SKFYQGKSQSFTSLAS 108 (179)
Q Consensus 71 ~~~GpL~~m~sL~~~LPiKRGL--SkfY~GKSkSFtsLa~ 108 (179)
.-..|+.+|.-.|+-|-+||-| +.||=.|.|=|-||..
T Consensus 270 li~dPa~E~~rVqdFLgLkr~it~khfyFnktKGFpClkK 309 (360)
T KOG3704|consen 270 LISDPAGELGRVQDFLGLKRVITDKHFYFNKTKGFPCLKK 309 (360)
T ss_pred eecCcHHHHHHHHHHhcccceeccceeEEecCCCceeeec
Confidence 3457999999999999999964 7899999999999984
No 7
>PRK15450 signal transduction protein PmrD; Provisional
Probab=8.27 E-value=1.8e+02 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.4
Q ss_pred CCCCCcchHHHHHhcccccC
Q 030357 72 NGGPLYEFSELMAQLPIKRG 91 (179)
Q Consensus 72 ~~GpL~~m~sL~~~LPiKRG 91 (179)
++|+|..+.+.+..+++|+|
T Consensus 24 ~ggaLkMIAEv~s~~~l~~g 43 (85)
T PRK15450 24 AGGALKMIAEVKSDFALKVG 43 (85)
T ss_pred CCchHHHHHHHhhccccCcc
Confidence 57999999999999999998
No 8
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=7.84 E-value=84 Score=28.50 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.1
Q ss_pred cccccccccccccccccC
Q 030357 92 LSKFYQGKSQSFTSLASV 109 (179)
Q Consensus 92 LSkfY~GKSkSFtsLa~v 109 (179)
|..+|+|+.++|++..+|
T Consensus 321 L~i~~~G~~~~F~~~~~~ 338 (370)
T PF02994_consen 321 LRITYNGKTKSFTDPEEA 338 (370)
T ss_dssp EEEESSSSEEEESSHHHH
T ss_pred hcceeCCceecCCCHHHH
Confidence 678999999999999885
No 9
>PF14268 YoaP: YoaP-like
Probab=7.55 E-value=1.4e+02 Score=20.14 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.7
Q ss_pred hcccc-cCccccccccc
Q 030357 85 QLPIK-RGLSKFYQGKS 100 (179)
Q Consensus 85 ~LPiK-RGLSkfY~GKS 100 (179)
++|.- ---+-||+||-
T Consensus 15 ~~P~pft~yalFYnGkf 31 (44)
T PF14268_consen 15 NAPCPFTTYALFYNGKF 31 (44)
T ss_pred cCCCceeEEEEEECCEE
Confidence 35553 35788999984
No 10
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=7.06 E-value=2.1e+02 Score=25.21 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCcchHHHHHhcccccCcccccccccccccccccCCCh--hhhhhccccCCCCchhhhcccccCCCC
Q 030357 74 GPLYEFSELMAQLPIKRGLSKFYQGKSQSFTSLASVKNI--EDLAKMNIKGSHYYRMKMKSCKSYGGG 139 (179)
Q Consensus 74 GpL~~m~sL~~~LPiKRGLSkfY~GKSkSFtsLa~v~sv--eDLaK~e~K~~~Py~kkrK~~~sy~~~ 139 (179)
.++..|+.|....|+++.++.||-|++.-+....+...+ +...++.. .+...+..+.+-++.
T Consensus 70 ~~~~~~~~~s~~~~~~~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~----~~S~~~~~~~sk~~~ 133 (285)
T KOG4210|consen 70 DGLSEEDSLSSKEELRGSSSTFFVGELSENIEESEDDNFSSEAGLRVDA----RSSSLEDSLSSKGGL 133 (285)
T ss_pred cchhhcccccCCcccccccccccccccccchhhccccccchhhcCcccc----hhhhhccccccccce
Done!