Query 030357
Match_columns 179
No_of_seqs 108 out of 123
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 20:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cqea2 g.66.1.1 (A:429-457) Z 40.1 4.2 0.0003 23.5 0.8 12 86-97 2-13 (29)
2 d1z1za1 d.323.1.1 (A:2-130) Mi 17.2 25 0.0018 25.6 1.6 22 79-104 10-31 (129)
3 d1dp7p_ a.4.5.20 (P:) Class II 4.2 91 0.0066 20.1 0.1 9 90-98 62-71 (76)
4 d2h1ta1 b.178.1.1 (A:2-187) Hy 3.2 1E+02 0.0075 23.1 -0.5 15 79-93 105-120 (186)
5 d1g97a2 c.68.1.5 (A:2-251) N-a 2.9 1.3E+02 0.0095 19.8 -0.1 20 108-131 224-243 (250)
6 d2oyza1 b.82.1.22 (A:2-94) Unc 2.9 1.4E+02 0.01 20.3 0.0 11 94-104 6-16 (93)
7 d1pj5a3 d.16.1.5 (A:220-338) N 2.9 2.3E+02 0.017 18.6 1.2 20 79-98 93-114 (119)
8 d1jb0l_ f.31.1.1 (L:) Photosys 2.9 1.6E+02 0.011 21.8 0.3 19 80-98 25-44 (151)
9 d1zk8a1 a.4.1.9 (A:6-77) Trans 2.8 1.7E+02 0.013 17.0 0.4 26 78-103 25-51 (72)
10 d1lnsa3 c.69.1.21 (A:146-550) 2.7 1.9E+02 0.014 21.9 0.7 15 94-108 6-20 (405)
No 1
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.14 E-value=4.2 Score=23.50 Aligned_cols=12 Identities=67% Similarity=1.021 Sum_probs=10.3
Q ss_pred cccccCcccccc
Q 030357 86 LPIKRGLSKFYQ 97 (179)
Q Consensus 86 LPiKRGLSkfY~ 97 (179)
||-||.|.|||-
T Consensus 2 ~~kkkelCKfYv 13 (29)
T d2cqea2 2 LPKKRELCKFYI 13 (29)
T ss_dssp CSCCCSBCTTTT
T ss_pred cchhhhhhhhhe
Confidence 788999999984
No 2
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage lambda [TaxId: 10710]}
Probab=17.16 E-value=25 Score=25.61 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=16.5
Q ss_pred hHHHHHhcccccCccccccccccccc
Q 030357 79 FSELMAQLPIKRGLSKFYQGKSQSFT 104 (179)
Q Consensus 79 m~sL~~~LPiKRGLSkfY~GKSkSFt 104 (179)
++.|+.++| |+ +||+|+-.=|.
T Consensus 10 ld~L~~~~~---~v-~~f~GrP~fid 31 (129)
T d1z1za1 10 LDALEKHDT---GA-TFFDGRPAVFD 31 (129)
T ss_dssp HHHHHHHSC---CS-CEESSCCSSSC
T ss_pred HHHHHhcCC---Ce-EEECCCccccC
Confidence 578888886 56 79999765553
No 3
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.24 E-value=91 Score=20.12 Aligned_cols=9 Identities=67% Similarity=1.165 Sum_probs=6.5
Q ss_pred cCcccc-ccc
Q 030357 90 RGLSKF-YQG 98 (179)
Q Consensus 90 RGLSkf-Y~G 98 (179)
||-||| |.|
T Consensus 62 rG~skYhY~G 71 (76)
T d1dp7p_ 62 RGNSKYHYYG 71 (76)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceEEEee
Confidence 578887 665
No 4
>d2h1ta1 b.178.1.1 (A:2-187) Hypothetical protein PA1994 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.18 E-value=1e+02 Score=23.13 Aligned_cols=15 Identities=40% Similarity=0.704 Sum_probs=12.1
Q ss_pred hHHHHHhccccc-Ccc
Q 030357 79 FSELMAQLPIKR-GLS 93 (179)
Q Consensus 79 m~sL~~~LPiKR-GLS 93 (179)
+.-+-..|||+| ||.
T Consensus 105 ~TPfTNTLPIRRLgL~ 120 (186)
T d2h1ta1 105 PSPFTNTFPIRRLGLA 120 (186)
T ss_dssp TCGGGGHHHHHHHCCC
T ss_pred eCccccccceeccCCC
Confidence 446778999999 994
No 5
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=2.91 E-value=1.3e+02 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=14.8
Q ss_pred cCCChhhhhhccccCCCCchhhhc
Q 030357 108 SVKNIEDLAKMNIKGSHYYRMKMK 131 (179)
Q Consensus 108 ~v~sveDLaK~e~K~~~Py~kkrK 131 (179)
.+.+.+||++-|. =|.+|++
T Consensus 224 gInt~~dL~~ae~----~~~~~~~ 243 (250)
T d1g97a2 224 GVNDRVALATAES----VMRRRIN 243 (250)
T ss_dssp CCSSHHHHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHH
Confidence 3679999999887 5655543
No 6
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.91 E-value=1.4e+02 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 030357 94 KFYQGKSQSFT 104 (179)
Q Consensus 94 kfY~GKSkSFt 104 (179)
-||+||-+|-+
T Consensus 6 vYFdGkV~S~~ 16 (93)
T d2oyza1 6 SYFAGGVKSLG 16 (93)
T ss_dssp EEGGGTEEEEE
T ss_pred EEECCEEEEEE
Confidence 48999887765
No 7
>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}
Probab=2.91 E-value=2.3e+02 Score=18.60 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=14.7
Q ss_pred hHHHHHhccc--ccCccccccc
Q 030357 79 FSELMAQLPI--KRGLSKFYQG 98 (179)
Q Consensus 79 m~sL~~~LPi--KRGLSkfY~G 98 (179)
++...+.+|+ .-||-++|+|
T Consensus 93 ~e~a~~r~P~l~~~gi~~~~NG 114 (119)
T d1pj5a3 93 WEATKQLLPALADSEIEDGFNG 114 (119)
T ss_dssp HHHHHHHCGGGGGSCEEEEEEE
T ss_pred HHHHHHhcCCcccccccceeec
Confidence 4455567887 4499999998
No 8
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.85 E-value=1.6e+02 Score=21.79 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=14.4
Q ss_pred HHHHHhccc-ccCccccccc
Q 030357 80 SELMAQLPI-KRGLSKFYQG 98 (179)
Q Consensus 80 ~sL~~~LPi-KRGLSkfY~G 98 (179)
-.+...||+ |+|||-+.-|
T Consensus 25 k~fi~NLP~YR~GlSp~~RG 44 (151)
T d1jb0l_ 25 KTFIGNLPAYRQGLSPILRG 44 (151)
T ss_dssp HHHHHTSTTTCTTCCHHHHH
T ss_pred HHHHhcCccccccCChhhhh
Confidence 467789999 6699877655
No 9
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=2.80 E-value=1.7e+02 Score=16.95 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.7
Q ss_pred chHHHHHhccccc-Ccccccccccccc
Q 030357 78 EFSELMAQLPIKR-GLSKFYQGKSQSF 103 (179)
Q Consensus 78 ~m~sL~~~LPiKR-GLSkfY~GKSkSF 103 (179)
+|..+-+.+-+.+ .|-.||.+|-.=+
T Consensus 25 t~~~Ia~~agvs~~slY~yF~~k~~L~ 51 (72)
T d1zk8a1 25 TLASLAQTLGVRSPSLYNHVKGLQDVR 51 (72)
T ss_dssp CHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred cHHHHHHHhCCCHHHHHHHCcCHHHHH
Confidence 6778888888866 4788887775433
No 10
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Probab=2.75 E-value=1.9e+02 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.2
Q ss_pred ccccccccccccccc
Q 030357 94 KFYQGKSQSFTSLAS 108 (179)
Q Consensus 94 kfY~GKSkSFtsLa~ 108 (179)
.||+||+|.--+-.+
T Consensus 6 ~~~~g~~~~~~~~~~ 20 (405)
T d1lnsa3 6 HFFNDKSLATFDSSL 20 (405)
T ss_dssp CEETTEECSCSCGGG
T ss_pred cccCCcccceecCCC
Confidence 689999997655544
Done!