Query 030360
Match_columns 179
No_of_seqs 109 out of 506
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07970 COPIIcoated_ERV: Endo 100.0 3.3E-40 7.1E-45 272.8 14.3 131 29-179 46-192 (222)
2 KOG2667 COPII vesicle protein 100.0 2.3E-40 5.1E-45 289.9 13.5 131 27-179 185-329 (379)
3 PF12421 DUF3672: Fibronectin 48.4 14 0.00031 28.3 2.1 24 35-58 30-53 (136)
4 PF15631 Imm-NTF2-2: NTF2 fold 21.6 52 0.0011 22.4 1.1 35 36-74 30-64 (66)
5 COG5061 ERO1 Oxidoreductin, en 13.3 92 0.002 28.1 1.0 24 35-58 313-336 (425)
6 TIGR02549 CRISPR_DxTHG CRISPR- 13.3 35 0.00075 19.0 -1.1 12 70-81 4-15 (26)
7 COG3862 Uncharacterized protei 11.6 2.1E+02 0.0046 21.4 2.3 18 36-53 11-28 (117)
8 PF13954 PapC_N: PapC N-termin 9.5 2E+02 0.0043 21.8 1.6 14 161-174 131-144 (146)
9 KOG0910 Thioredoxin-like prote 8.7 2.9E+02 0.0063 21.7 2.2 23 120-142 105-127 (150)
10 PF00976 ACTH_domain: Corticot 7.8 1.9E+02 0.0041 17.5 0.7 14 73-86 1-14 (39)
No 1
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=100.00 E-value=3.3e-40 Score=272.81 Aligned_cols=131 Identities=34% Similarity=0.573 Sum_probs=107.2
Q ss_pred ccccCCCCCCceEEEEEEEeeeceEEEEeeCC-----CCC--ccC---CC-CCcccEEEEEeeeccCCCcchhhhhhhhc
Q 030360 29 VKRPAPKAGGCRIEGYVRVKKVPGNLIISARS-----GAH--SFD---TS-EMNMSHVISHLSFGRKLSPKVMSDVQRLI 97 (179)
Q Consensus 29 ~~~~~~~~eGCrI~G~l~VnKV~GnfhIs~~s-----~~h--~~~---~~-~~N~SH~I~~LsFG~~~~~~~~~~~~~~~ 97 (179)
++.....+|||||+|++.||||||||||+++. .+| ++. .. .+||||+|||||||++++
T Consensus 46 ~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd~~~~~~~~~~N~SH~I~~lsFG~~~~----------- 114 (222)
T PF07970_consen 46 IKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHDLSPFDDEPKFNFSHTINHLSFGEEIP----------- 114 (222)
T ss_pred hhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceeehhhhccccCCCCCeEEEEEEeccccc-----------
Confidence 34456678999999999999999999999975 223 332 22 799999999999999987
Q ss_pred ccCCCCcCCCCCceeeeeeccCCceeEEEEEEEEEEeEEecCCccccceeeeeee--eEEeecCC---CCCCceEEEEEe
Q 030360 98 PYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEY--TAHSSLVQ---SIYIPAAKFHFE 172 (179)
Q Consensus 98 ~~~~~~~nPLdg~~~~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~~~~~~tyQY--T~~~~~~~---~~~~PgI~F~YD 172 (179)
+..|||||+..+. ..+....+|+||||||||+|...++.. +.|||| |++.+... ..++|||||+||
T Consensus 115 ----~~~~PLdg~~~~~-~~~~~~~~~~YflkvVPT~y~~~~~~~----~~t~qYsvt~~~~~~~~~~~~~~PGI~F~Yd 185 (222)
T PF07970_consen 115 ----GIVNPLDGTQKIV-QTDNGNYMYQYFLKVVPTTYEDLDGFS----IETYQYSVTEHSRPLNGGSSGGLPGIFFKYD 185 (222)
T ss_pred ----cccccccCccccc-cCCCCceeEEEEEEEeeeeeEeccccc----cccccccceeeeeeccCCCCCCCceEEEEEe
Confidence 6789999999842 134568999999999999999988754 689999 56666553 268999999999
Q ss_pred CcceeEC
Q 030360 173 LSPMQVE 179 (179)
Q Consensus 173 ~SPi~V~ 179 (179)
||||+|+
T Consensus 186 ~SPi~v~ 192 (222)
T PF07970_consen 186 FSPIMVV 192 (222)
T ss_pred ceeEEEE
Confidence 9999984
No 2
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-40 Score=289.91 Aligned_cols=131 Identities=34% Similarity=0.527 Sum_probs=111.1
Q ss_pred ccccccCCCCCCceEEEEEEEeeeceEEEEeeC-----CCCCccCC---CCCcccEEEEEeeeccCCCcchhhhhhhhcc
Q 030360 27 ENVKRPAPKAGGCRIEGYVRVKKVPGNLIISAR-----SGAHSFDT---SEMNMSHVISHLSFGRKLSPKVMSDVQRLIP 98 (179)
Q Consensus 27 ~~~~~~~~~~eGCrI~G~l~VnKV~GnfhIs~~-----s~~h~~~~---~~~N~SH~I~~LsFG~~~~~~~~~~~~~~~~ 98 (179)
...+.+...+|||||+|++.||||||||||+++ +..|.++. ..+||||+|||||||+.+|
T Consensus 185 ~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~~~~~~n~SH~InhLSFG~~~p------------ 252 (379)
T KOG2667|consen 185 FTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLSLLDNLNFSHRINHLSFGEYIP------------ 252 (379)
T ss_pred cccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhhhcccCCceEEEeeeccCCCCc------------
Confidence 345567788999999999999999999999985 23466665 3799999999999999998
Q ss_pred cCCCCcCCCCCceeeeeeccCCceeEEEEEEEEEEeEEecCCccccceeeeeee--eEEeecCC----CCCCceEEEEEe
Q 030360 99 YLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEY--TAHSSLVQ----SIYIPAAKFHFE 172 (179)
Q Consensus 99 ~~~~~~nPLdg~~~~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~~~~~~tyQY--T~~~~~~~----~~~~PgI~F~YD 172 (179)
++.|||||+.+++ .++..+|+||+|||||.|.+..+.. +.|||| |++.+... ..++|||||.||
T Consensus 253 ---~~~nPLdG~~~~~---~~~~~~~~Yf~KvVPT~y~~~~~~~----~~T~QysVt~~~~~~~~~~~~~~~PGifF~Ye 322 (379)
T KOG2667|consen 253 ---GIVNPLDGTNFIA---NEHLTTFQYFLKVVPTVYKYKSGRV----IDTNQYSVTEYEYVLHSHRAKSGIPGIFFKYE 322 (379)
T ss_pred ---ccccCCCCccccc---cCCccceeeEEEEcceEEEeecCce----ecceeeeeeeeEEeccccccccCCCeEEEEEe
Confidence 8999999988854 3568999999999999999888764 899999 67766542 348999999999
Q ss_pred CcceeEC
Q 030360 173 LSPMQVE 179 (179)
Q Consensus 173 ~SPi~V~ 179 (179)
||||+|+
T Consensus 323 lSPl~V~ 329 (379)
T KOG2667|consen 323 LSPLMVK 329 (379)
T ss_pred cCceEEE
Confidence 9999984
No 3
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=48.44 E-value=14 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCCceEEEEEEEeeeceEEEEee
Q 030360 35 KAGGCRIEGYVRVKKVPGNLIISA 58 (179)
Q Consensus 35 ~~eGCrI~G~l~VnKV~GnfhIs~ 58 (179)
..|-|.|.|+|..+++-|.+--+.
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~~ 53 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKAY 53 (136)
T ss_pred EcccceEEeEEEehhEecceeEEE
Confidence 478999999999999999887654
No 4
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=21.59 E-value=52 Score=22.35 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCceEEEEEEEeeeceEEEEeeCCCCCccCCCCCcccE
Q 030360 36 AGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSH 74 (179)
Q Consensus 36 ~eGCrI~G~l~VnKV~GnfhIs~~s~~h~~~~~~~N~SH 74 (179)
+.---|+|++...-.-|+|+|..+.. |..-++++|
T Consensus 30 ~~~WiV~Gtl~~~~~GGv~~I~I~K~----dgkVl~v~H 64 (66)
T PF15631_consen 30 GDSWIVEGTLPPGMLGGVFYIEIRKK----DGKVLNVTH 64 (66)
T ss_pred CCeEEEEeecCCCccCCeEEEEEEcc----CCeEEEEEe
Confidence 33488999998888899999998521 224466666
No 5
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=13.31 E-value=92 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=17.1
Q ss_pred CCCCceEEEEEEEeeeceEEEEee
Q 030360 35 KAGGCRIEGYVRVKKVPGNLIISA 58 (179)
Q Consensus 35 ~~eGCrI~G~l~VnKV~GnfhIs~ 58 (179)
+-|.||++|.++++--.-.+.|-.
T Consensus 313 gCekCrLWGkIQttGygtALKilf 336 (425)
T COG5061 313 GCEKCRLWGKIQTTGYGTALKILF 336 (425)
T ss_pred CchhhheeeeeeecchHHHHHHHh
Confidence 468999999999875544444433
No 6
>TIGR02549 CRISPR_DxTHG CRISPR-associated DxTHG motif protein. This model describes a short region highly conserved between two otherwise substantially different CRISPR-associated (cas) proteins, TIGR02221 and TIGR01987. This region includes the motif [VIL]-D-x-[ST]-H-[GS].
Probab=13.25 E-value=35 Score=19.02 Aligned_cols=12 Identities=8% Similarity=0.495 Sum_probs=8.9
Q ss_pred CcccEEEEEeee
Q 030360 70 MNMSHVISHLSF 81 (179)
Q Consensus 70 ~N~SH~I~~LsF 81 (179)
+|+||-+++++|
T Consensus 4 lDiTHGfr~~P~ 15 (26)
T TIGR02549 4 LDVTHGFNFMPL 15 (26)
T ss_pred EEecCcccchHH
Confidence 577888887765
No 7
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=11.56 E-value=2.1e+02 Score=21.37 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=16.0
Q ss_pred CCCceEEEEEEEeeeceE
Q 030360 36 AGGCRIEGYVRVKKVPGN 53 (179)
Q Consensus 36 ~eGCrI~G~l~VnKV~Gn 53 (179)
.-||.|+=.+.+.+|.||
T Consensus 11 P~gC~i~Ve~~~~~v~Gn 28 (117)
T COG3862 11 PIGCHIKVELHIKSVKGN 28 (117)
T ss_pred CCccEEEEEEEEEEEecC
Confidence 459999999999999997
No 8
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=9.51 E-value=2e+02 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=11.4
Q ss_pred CCCCceEEEEEeCc
Q 030360 161 SIYIPAAKFHFELS 174 (179)
Q Consensus 161 ~~~~PgI~F~YD~S 174 (179)
..|+|++++.|+++
T Consensus 131 D~Gi~A~~lnY~~n 144 (146)
T PF13954_consen 131 DDGIPALFLNYNLN 144 (146)
T ss_dssp BS-TTEEEEEEEEE
T ss_pred CCCCeEEEEEEEEe
Confidence 46899999999986
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=8.70 E-value=2.9e+02 Score=21.73 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=19.1
Q ss_pred CceeEEEEEEEEEEeEEecCCcc
Q 030360 120 ANVTIEHYLQIVKTEVITRRYSR 142 (179)
Q Consensus 120 ~~~~~~YflkVVPT~y~~~~~~~ 142 (179)
....-+|.|+.|||.....+|+.
T Consensus 105 ~ela~~Y~I~avPtvlvfknGe~ 127 (150)
T KOG0910|consen 105 PELAEDYEISAVPTVLVFKNGEK 127 (150)
T ss_pred cchHhhcceeeeeEEEEEECCEE
Confidence 34567999999999999888864
No 10
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=7.83 E-value=1.9e+02 Score=17.54 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=10.8
Q ss_pred cEEEEEeeeccCCC
Q 030360 73 SHVISHLSFGRKLS 86 (179)
Q Consensus 73 SH~I~~LsFG~~~~ 86 (179)
|..+.||++|.+..
T Consensus 1 Sy~mehfrwgkp~g 14 (39)
T PF00976_consen 1 SYSMEHFRWGKPVG 14 (39)
T ss_pred CccccceeccCCCC
Confidence 34678999999864
Done!