Query 030360
Match_columns 179
No_of_seqs 109 out of 506
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy2_N Fibrinogen alpha chain; 7.5 20 0.00068 22.4 -3.0 8 36-43 21-28 (53)
2 2eqe_A Tumor necrosis factor, 5.0 1.8E+02 0.0062 17.5 0.4 12 33-44 17-28 (48)
3 3jyb_A Sensor protein; beta ba 4.6 9E+02 0.031 16.6 5.7 43 74-132 83-125 (145)
4 2rl8_A Cation-dependent mannos 4.1 2.6E+02 0.0088 20.7 0.7 29 104-133 26-54 (154)
5 2dyj_A Ribosome-binding factor 3.8 4.2E+02 0.014 17.6 1.6 16 160-175 78-93 (95)
6 2ov2_I Serine/threonine-protei 3.3 3.9E+02 0.013 14.5 0.8 16 68-84 4-19 (35)
7 1yhp_A Ddcad-1, GP24, calcium- 3.0 5.6E+02 0.019 20.1 1.8 10 165-174 168-177 (212)
8 1y4e_A Sodium/hydrogen exchang 3.0 39 0.0013 18.1 -3.5 14 164-177 3-16 (27)
9 2odb_B Serine/threonine-protei 2.8 4.8E+02 0.016 14.1 0.8 14 69-83 5-18 (35)
10 2qme_I CRIB domain of the seri 2.8 4.8E+02 0.016 14.2 0.8 14 69-83 5-18 (36)
No 1
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=7.48 E-value=20 Score=22.42 Aligned_cols=8 Identities=50% Similarity=1.406 Sum_probs=5.0
Q ss_pred CCCceEEE
Q 030360 36 AGGCRIEG 43 (179)
Q Consensus 36 ~eGCrI~G 43 (179)
..||||.|
T Consensus 21 PsGCRm~G 28 (53)
T 1jy2_N 21 PSGCRMKG 28 (53)
T ss_dssp ECHHHHHH
T ss_pred CCcccchh
Confidence 35777665
No 2
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=5.00 E-value=1.8e+02 Score=17.50 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=8.5
Q ss_pred CCCCCCceEEEE
Q 030360 33 APKAGGCRIEGY 44 (179)
Q Consensus 33 ~~~~eGCrI~G~ 44 (179)
.=...||...|+
T Consensus 17 kCRk~GC~fFGT 28 (48)
T 2eqe_A 17 KCRKAGCVYFGT 28 (48)
T ss_dssp BCSSTTCCSBCC
T ss_pred hhhhcCCCcccC
Confidence 445688888775
No 3
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=4.65 E-value=9e+02 Score=16.56 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=23.8
Q ss_pred EEEEEeeeccCCCcchhhhhhhhcccCCCCcCCCCCceeeeeeccCCceeEEEEEEEEE
Q 030360 74 HVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVK 132 (179)
Q Consensus 74 H~I~~LsFG~~~~~~~~~~~~~~~~~~~~~~nPLdg~~~~~~~~~~~~~~~~YflkVVP 132 (179)
-.+.+..-|+..|.. .-|+....++-+.... .....+||+|-.
T Consensus 83 ~~~~~~~~Gd~~pf~---------------~R~~~~r~~~f~l~l~-~~~~t~ylRv~s 125 (145)
T 3jyb_A 83 QLVRDQHTGESRPFQ---------------ERPLPSRSYLFSLPVD-GKPMTLYVRMTS 125 (145)
T ss_dssp EEEEEEEESTTSCSC---------------CCSCTTCCEEEEECCS-SSCEEEEEEEEC
T ss_pred ccEEEEeccCcccCc---------------cCccCCCceEEEecCC-CCcEEEEEEEcc
Confidence 456677788877621 2234443333323323 556788888764
No 4
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Probab=4.11 E-value=2.6e+02 Score=20.75 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=17.8
Q ss_pred cCCCCCceeeeeeccCCceeEEEEEEEEEE
Q 030360 104 HDRLNGRSFINHREVGANVTIEHYLQIVKT 133 (179)
Q Consensus 104 ~nPLdg~~~~~~~~~~~~~~~~YflkVVPT 133 (179)
..||.+..+... .......|.|+|.|--.
T Consensus 26 L~pL~~~~f~~~-~~~~~~~Y~Y~~nVCg~ 54 (154)
T 2rl8_A 26 LTPLFQKSFEST-VGQSPDMYSYVFRVCRE 54 (154)
T ss_dssp TGGGTTCCEECC-CC---CCEEEEECSSSC
T ss_pred cccccCCeeEEe-eccCCCceEEEEEEecC
Confidence 568999877421 12335789999987654
No 5
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=3.84 E-value=4.2e+02 Score=17.64 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=13.0
Q ss_pred CCCCCceEEEEEeCcc
Q 030360 160 QSIYIPAAKFHFELSP 175 (179)
Q Consensus 160 ~~~~~PgI~F~YD~SP 175 (179)
.-...|-+.|.||=|+
T Consensus 78 ~lr~~P~L~F~~D~s~ 93 (95)
T 2dyj_A 78 RMRRLPRLEFLPWRAS 93 (95)
T ss_dssp CCSSCCEEEEEEGGGC
T ss_pred CCccCCeEEEEEcCCC
Confidence 3467899999999775
No 6
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=3.32 E-value=3.9e+02 Score=14.50 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=10.1
Q ss_pred CCCcccEEEEEeeeccC
Q 030360 68 SEMNMSHVISHLSFGRK 84 (179)
Q Consensus 68 ~~~N~SH~I~~LsFG~~ 84 (179)
...||.|++ |+.|.+.
T Consensus 4 ~Ptnf~H~~-Hvg~d~~ 19 (35)
T 2ov2_I 4 APSNFEHRV-HTGFDQH 19 (35)
T ss_dssp CCEEEEEEE-EEEEETT
T ss_pred CCCCCcCee-eeeeCCC
Confidence 346888885 4566543
No 7
>1yhp_A Ddcad-1, GP24, calcium-dependent cell adhesion molecule-1; NMR {Dictyostelium discoideum} PDB: 2b1o_A
Probab=3.03 E-value=5.6e+02 Score=20.14 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=8.3
Q ss_pred ceEEEEEeCc
Q 030360 165 PAAKFHFELS 174 (179)
Q Consensus 165 PgI~F~YD~S 174 (179)
-.|||+||-|
T Consensus 168 GSvYFKYd~s 177 (212)
T 1yhp_A 168 GSVYFKYSPT 177 (212)
T ss_dssp EEEEEEEETT
T ss_pred eeEEEEECCC
Confidence 4599999976
No 8
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=2.99 E-value=39 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=10.3
Q ss_pred CceEEEEEeCccee
Q 030360 164 IPAAKFHFELSPMQ 177 (179)
Q Consensus 164 ~PgI~F~YD~SPi~ 177 (179)
.|.+||.|=+.||.
T Consensus 3 ~~~~FF~~LLPPII 16 (27)
T 1y4e_A 3 QSDVFFLFLLPPII 16 (27)
T ss_dssp CSCSSHHHHSCCSS
T ss_pred ccceeeeeccCccE
Confidence 36778888888874
No 9
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=2.79 E-value=4.8e+02 Score=14.10 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=9.1
Q ss_pred CCcccEEEEEeeecc
Q 030360 69 EMNMSHVISHLSFGR 83 (179)
Q Consensus 69 ~~N~SH~I~~LsFG~ 83 (179)
..||.|++ |+.|.+
T Consensus 5 Ptnf~H~~-Hvg~d~ 18 (35)
T 2odb_B 5 PQNFQHRV-HTSFDP 18 (35)
T ss_dssp CEEEEEEE-EEEEET
T ss_pred CCCCcCee-eeeECC
Confidence 46888875 456654
No 10
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=2.76 E-value=4.8e+02 Score=14.21 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=8.9
Q ss_pred CCcccEEEEEeeecc
Q 030360 69 EMNMSHVISHLSFGR 83 (179)
Q Consensus 69 ~~N~SH~I~~LsFG~ 83 (179)
..||.|++| ..|.+
T Consensus 5 Ptnf~H~~H-vg~d~ 18 (36)
T 2qme_I 5 PSDFEHTIH-VGFDA 18 (36)
T ss_dssp CEEEEEEEE-ECCBT
T ss_pred CCCCCCeeE-cccCC
Confidence 468888854 55554
Done!