Query 030360
Match_columns 179
No_of_seqs 109 out of 506
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e3ha5 d.101.1.1 (A:152-262) 7.9 1.1E+02 0.0081 19.7 2.4 17 43-59 6-22 (111)
2 d1s3si_ d.15.1.2 (I:) p47 {Rat 5.1 39 0.0028 19.3 -1.2 12 68-79 34-45 (50)
3 d1b33n_ d.30.1.1 (N:) Allophyc 3.9 2.1E+02 0.016 16.7 1.7 12 123-134 23-34 (67)
4 d1qwta_ b.26.1.3 (A:) Interfer 3.7 3.4E+02 0.024 19.6 3.1 9 78-86 157-165 (239)
5 d1m1la_ d.260.1.1 (A:) Suppres 3.5 4.1E+02 0.03 19.1 3.5 12 102-113 37-48 (236)
6 d1g3pa2 b.37.1.1 (A:91-217) N- 3.5 1.5E+02 0.011 18.9 0.7 9 103-111 12-20 (127)
7 d1yp2a1 b.81.1.4 (A:317-451) G 3.0 3.5E+02 0.026 16.8 2.4 17 34-50 16-32 (135)
8 d1q8ba_ d.58.4.6 (A:) Hypothet 2.9 3.9E+02 0.028 15.8 2.4 26 33-58 31-56 (93)
9 d1x7va_ d.58.4.11 (A:) Hypothe 2.9 3.3E+02 0.024 15.8 2.0 24 35-58 35-58 (98)
10 d3bzka2 a.60.2.6 (A:564-636) T 2.9 1.2E+02 0.0087 18.1 -0.4 8 105-112 2-9 (73)
No 1
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=7.91 E-value=1.1e+02 Score=19.69 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.7
Q ss_pred EEEEEeeeceEEEEeeC
Q 030360 43 GYVRVKKVPGNLIISAR 59 (179)
Q Consensus 43 G~l~VnKV~GnfhIs~~ 59 (179)
|-++|-||-|.|.|.|.
T Consensus 6 gaVRVg~idge~viNPt 22 (111)
T d1e3ha5 6 GGVRVALIRGQWVAFPT 22 (111)
T ss_dssp EEEEEEEETTEEEESCC
T ss_pred EEEEEEEECCEEEECCC
Confidence 66788899999999984
No 2
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.08 E-value=39 Score=19.35 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=5.9
Q ss_pred CCCcccEEEEEe
Q 030360 68 SEMNMSHVISHL 79 (179)
Q Consensus 68 ~~~N~SH~I~~L 79 (179)
..||.||+|..+
T Consensus 34 ~rFN~~Htv~di 45 (50)
T d1s3si_ 34 QKFNHSHRISDI 45 (50)
T ss_dssp ----CCCCHHHH
T ss_pred EEccCccCHHHH
Confidence 579999987543
No 3
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.91 E-value=2.1e+02 Score=16.70 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=8.8
Q ss_pred eEEEEEEEEEEe
Q 030360 123 TIEHYLQIVKTE 134 (179)
Q Consensus 123 ~~~YflkVVPT~ 134 (179)
.-.||-|+||-.
T Consensus 23 qNtyfTK~Vpy~ 34 (67)
T d1b33n_ 23 QNTYFTKLVPYE 34 (67)
T ss_dssp HHHEEEEEEEHH
T ss_pred hheeeEEeechH
Confidence 346899999843
No 4
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.71 E-value=3.4e+02 Score=19.63 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=7.3
Q ss_pred EeeeccCCC
Q 030360 78 HLSFGRKLS 86 (179)
Q Consensus 78 ~LsFG~~~~ 86 (179)
.|.||+..+
T Consensus 157 ~lcFGeewp 165 (239)
T d1qwta_ 157 WFCVGESWP 165 (239)
T ss_dssp EEEECCSCT
T ss_pred EEEeccccC
Confidence 688898876
No 5
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.51 E-value=4.1e+02 Score=19.12 Aligned_cols=12 Identities=33% Similarity=0.363 Sum_probs=9.6
Q ss_pred CCcCCCCCceee
Q 030360 102 GSHDRLNGRSFI 113 (179)
Q Consensus 102 ~~~nPLdg~~~~ 113 (179)
|..+||||...-
T Consensus 37 GG~dpLDgisiy 48 (236)
T d1m1la_ 37 GGPDPLDYVSMY 48 (236)
T ss_dssp TCSCSCSEEEEE
T ss_pred CCCCCCCeEEEe
Confidence 678899998763
No 6
>d1g3pa2 b.37.1.1 (A:91-217) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=3.46 E-value=1.5e+02 Score=18.93 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=7.4
Q ss_pred CcCCCCCce
Q 030360 103 SHDRLNGRS 111 (179)
Q Consensus 103 ~~nPLdg~~ 111 (179)
..|||||+-
T Consensus 12 yinpldgty 20 (127)
T d1g3pa2 12 YINPLDGTY 20 (127)
T ss_dssp CCCTTSSSS
T ss_pred eeccCCCcC
Confidence 489999975
No 7
>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=3.00 E-value=3.5e+02 Score=16.77 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=11.3
Q ss_pred CCCCCceEEEEEEEeee
Q 030360 34 PKAGGCRIEGYVRVKKV 50 (179)
Q Consensus 34 ~~~eGCrI~G~l~VnKV 50 (179)
.-++||.|.+..-.+-+
T Consensus 16 ~Ig~g~~I~~~~i~~s~ 32 (135)
T d1yp2a1 16 VIGEGCVIKNCKIHHSV 32 (135)
T ss_dssp EECTTCEEEEEEEESCE
T ss_pred EECCCCEEeCCEEeccc
Confidence 35899999875543433
No 8
>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}
Probab=2.91 E-value=3.9e+02 Score=15.76 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCCCCCceEEEEEEEeeeceEEEEee
Q 030360 33 APKAGGCRIEGYVRVKKVPGNLIISA 58 (179)
Q Consensus 33 ~~~~eGCrI~G~l~VnKV~GnfhIs~ 58 (179)
....+||..+--..-..-|+.|.+.=
T Consensus 31 tr~E~Gcl~y~~~~d~~~p~~~~~~E 56 (93)
T d1q8ba_ 31 TNKEEGCITFHAYPLEPSERKIMLWE 56 (93)
T ss_dssp HTTSTTEEEEEEEECCGGGCEEEEEE
T ss_pred HhCCCCcEEEEEEecCCCCCEEEEEE
Confidence 34578999999988888899988864
No 9
>d1x7va_ d.58.4.11 (A:) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.87 E-value=3.3e+02 Score=15.84 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=18.7
Q ss_pred CCCCceEEEEEEEeeeceEEEEee
Q 030360 35 KAGGCRIEGYVRVKKVPGNLIISA 58 (179)
Q Consensus 35 ~~eGCrI~G~l~VnKV~GnfhIs~ 58 (179)
..+||..+.-..-.--|+.|.+.-
T Consensus 35 ~epGcl~~~~~~~~~~~~~~~~~E 58 (98)
T d1x7va_ 35 AEAGCLQYDLHQDRHDSHLFYMIE 58 (98)
T ss_dssp HSTTEEEEEEEECSSCTTEEEEEE
T ss_pred cCCCceEEEEEEcCCCCCEEEEEE
Confidence 478999998887777777777764
No 10
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.85 E-value=1.2e+02 Score=18.09 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=6.1
Q ss_pred CCCCCcee
Q 030360 105 DRLNGRSF 112 (179)
Q Consensus 105 nPLdg~~~ 112 (179)
||||++..
T Consensus 2 nPLD~T~I 9 (73)
T d3bzka2 2 NPLDASAV 9 (73)
T ss_dssp CGGGGSSC
T ss_pred CCcccCCC
Confidence 78888765
Done!