BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030361
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
           MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
           Cerevisiae Complexed With Nad, Udp-Glucose, And
           Galactose
          Length = 699

 Score = 30.0 bits (66), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 32  PLHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVL 91
           P    ++ +EAR +++D ++   +V     T F+ TFA +                 +V 
Sbjct: 352 PFGYQLRGVEARFSAEDMRYDARFVTIGAGTRFQATFANL--------------GASIVD 397

Query: 92  PQFNGAAYVYRHFVRPFYMNPQSA 115
            + NG + V  +     Y+NP SA
Sbjct: 398 LKVNGQSVVLGYENEEGYLNPDSA 421


>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
           Complex With Trna(Gln)
 pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
           Complex With Trna(Gln)
          Length = 619

 Score = 28.1 bits (61), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 109 YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLI 155
           Y+ P   SS++ Y+     +FR +DD+L    + + E  +E  ER++
Sbjct: 410 YLRPLPTSSRM-YLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIM 455


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,532,857
Number of Sequences: 62578
Number of extensions: 155293
Number of successful extensions: 336
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)