Query 030361
Match_columns 179
No_of_seqs 180 out of 655
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 100.0 4E-33 8.7E-38 227.9 7.6 132 11-148 49-181 (186)
2 KOG1726 HVA22/DP1 gene product 100.0 4.2E-31 9E-36 221.3 12.6 139 20-163 2-142 (225)
3 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 1.3E-30 2.8E-35 191.1 10.3 93 17-109 2-94 (94)
4 COG5052 YOP1 Protein involved 99.9 3.3E-22 7.1E-27 162.2 10.2 105 14-118 51-157 (186)
5 KOG1726 HVA22/DP1 gene product 92.4 4.3 9.4E-05 34.7 12.4 106 8-114 37-165 (225)
6 PF15144 DUF4576: Domain of un 44.2 42 0.00091 24.4 3.8 35 140-176 47-81 (88)
7 PF09726 Macoilin: Transmembra 42.5 53 0.0011 32.4 5.5 32 51-82 30-62 (697)
8 PF01372 Melittin: Melittin; 31.9 53 0.0012 18.8 2.2 18 7-24 1-18 (26)
9 PRK11877 psaI photosystem I re 31.1 56 0.0012 20.5 2.4 21 15-35 6-26 (38)
10 COG2270 Permeases of the major 27.7 3.6E+02 0.0077 25.4 8.1 88 15-113 59-148 (438)
11 CHL00186 psaI photosystem I su 25.0 51 0.0011 20.4 1.4 19 17-35 4-22 (36)
12 COG3322 Predicted periplasmic 24.1 36 0.00078 30.2 0.9 39 140-179 43-81 (295)
13 smart00648 SWAP Suppressor-of- 23.8 1E+02 0.0022 19.8 2.8 25 134-158 2-26 (54)
14 KOG1374 Gamma tubulin [Cytoske 22.5 44 0.00096 31.1 1.2 12 2-13 143-154 (448)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4e-33 Score=227.92 Aligned_cols=132 Identities=42% Similarity=0.699 Sum_probs=111.9
Q ss_pred HHHHHHHHhHHHhHhHHHhHhhHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 030361 11 FLQVVVNNFDVLALPVVTLVYPLHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLV 90 (179)
Q Consensus 11 ~l~~~~~~~~~l~~~~ig~lYPay~S~kale~~~~~d~~~WL~YWvv~a~~~~~E~~~~~ll~wiPfY~~~Kl~fliwL~ 90 (179)
-+++++++.+.++|+++|++||+|+|++|||++++.||+|||+||++||+++++|.+...+++|+|+||++|++|++||+
T Consensus 49 ~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~ 128 (186)
T KOG1725|consen 49 AVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLV 128 (186)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhHHHHhhhcccccCcCcccchh-hhhhhhhhhhhchhHHHHHHHHHHHHhcH
Q 030361 91 LPQFNGAAYVYRHFVRPFYMNPQSASSKI-WYVPRKKNIFRQQDDILTAAEKYMQEHGT 148 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~l~~~e~~~id~-~~~~~k~~~~~~~~d~~~~~~~~i~~~G~ 148 (179)
+|+++||..+|++++||++.+++. ++|+ +-.+ | ...||...++.+...++++
T Consensus 129 lP~~~Ga~~iY~~~vrp~~~~~~~-~~~~~~~~~-k----~~~~~i~~~a~~~~n~~~~ 181 (186)
T KOG1725|consen 129 LPQFNGAAIIYNHIVRPFFLKHSR-EIDDIEDAN-K----QIKDDILTAAGEEENKKDA 181 (186)
T ss_pred ccCCCCceeeechhhhhhhhhhhh-hhhhhhhcc-c----ccchhcccccchhhccccC
Confidence 999999999999999999999886 3432 2111 1 2234555555555444443
No 2
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.97 E-value=4.2e-31 Score=221.35 Aligned_cols=139 Identities=24% Similarity=0.420 Sum_probs=119.0
Q ss_pred HHHhHhHHHhHhhHHHHHHHHhc--CChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCccchh
Q 030361 20 DVLALPVVTLVYPLHASIKAIEA--RSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGA 97 (179)
Q Consensus 20 ~~l~~~~ig~lYPay~S~kale~--~~~~d~~~WL~YWvv~a~~~~~E~~~~~ll~wiPfY~~~Kl~fliwL~~P~~~GA 97 (179)
.+++..++|++||||+|+||+++ ++.++.+.|++||||+|+++++|.++|.+++|+|||+++|++|++||+.|.++|+
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~ 81 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA 81 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence 35778999999999999999999 5567899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhh
Q 030361 98 AYVYRHFVRPFYMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREER 163 (179)
Q Consensus 98 ~~iY~~~i~P~l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~ 163 (179)
.+||+.|+||+++++|. +||..+++.|.+ .-|...+.-+.....++.+.-.++.+-..+..
T Consensus 82 ~~vY~~f~~p~ls~~E~-eid~~l~~~k~~----~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~t 142 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEE-EIDRMLVEAKER----VYDAAVSILKRALNYAQTYALEAAVFSQGQLT 142 (225)
T ss_pred HHHHHHHhhhhhhhHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998 899999998844 34555555555667777766555544444433
No 3
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=1.3e-30 Score=191.14 Aligned_cols=93 Identities=40% Similarity=0.815 Sum_probs=89.8
Q ss_pred HHhHHHhHhHHHhHhhHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCccch
Q 030361 17 NNFDVLALPVVTLVYPLHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNG 96 (179)
Q Consensus 17 ~~~~~l~~~~ig~lYPay~S~kale~~~~~d~~~WL~YWvv~a~~~~~E~~~~~ll~wiPfY~~~Kl~fliwL~~P~~~G 96 (179)
+...+++|+++|++||+|+|+|+++++++++.++||+||+++|+++++|.+++.+++|+|+|+++|+++++||.+|+++|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~G 81 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQG 81 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccc
Q 030361 97 AAYVYRHFVRPFY 109 (179)
Q Consensus 97 A~~iY~~~i~P~l 109 (179)
|+++|+++++|++
T Consensus 82 a~~iy~~~i~P~~ 94 (94)
T PF03134_consen 82 AEYIYDKFIRPFL 94 (94)
T ss_pred HHHHHHHHccccC
Confidence 9999999999975
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.87 E-value=3.3e-22 Score=162.17 Aligned_cols=105 Identities=22% Similarity=0.401 Sum_probs=95.0
Q ss_pred HHHHHhHH--HhHhHHHhHhhHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcc
Q 030361 14 VVVNNFDV--LALPVVTLVYPLHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVL 91 (179)
Q Consensus 14 ~~~~~~~~--l~~~~ig~lYPay~S~kale~~~~~d~~~WL~YWvv~a~~~~~E~~~~~ll~wiPfY~~~Kl~fliwL~~ 91 (179)
++...++. ++.+++|+..|++.|.+++++.++.|++||++||+|+++.+++|..+..+++|+|+|+..|.+|++|+..
T Consensus 51 lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~ 130 (186)
T COG5052 51 LFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLL 130 (186)
T ss_pred HHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33334444 7778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHhhhcccccCcCcccch
Q 030361 92 PQFNGAAYVYRHFVRPFYMNPQSASSK 118 (179)
Q Consensus 92 P~~~GA~~iY~~~i~P~l~~~e~~~id 118 (179)
|+|+||..||+++++|++.+|..++|+
T Consensus 131 prt~GA~~IY~~~i~p~~s~~~~~~Ie 157 (186)
T COG5052 131 PRTEGARIIYDDIIAPDVSDHGFRTIE 157 (186)
T ss_pred cccCceeeeHHhhccccccHHHHHHHH
Confidence 999999999999999999888753333
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=92.39 E-value=4.3 Score=34.68 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHhHHHhHhHHHhHhhHHHHHHHHhc-----------------------CChhhhhHHHHHHHHHHHHHHH
Q 030361 8 NNNFLQVVVNNFDVLALPVVTLVYPLHASIKAIEA-----------------------RSASDDQQWLTYWVLYSMITLF 64 (179)
Q Consensus 8 ~~~~l~~~~~~~~~l~~~~ig~lYPay~S~kale~-----------------------~~~~d~~~WL~YWvv~a~~~~~ 64 (179)
|++++.++...++.+.-.++. -.|.|.=+|..-- ...+++..-+.+|....++..+
T Consensus 37 ~YWIv~A~~t~~e~~~d~~ls-w~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a 115 (225)
T KOG1726|consen 37 MYWIVFAALTVFETLTDFLLS-WFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAA 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999887777 7788888877631 1135677889999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhccCccchhhHHHHhhhcccccCcCc
Q 030361 65 ELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRHFVRPFYMNPQS 114 (179)
Q Consensus 65 E~~~~~ll~wiPfY~~~Kl~fliwL~~P~~~GA~~iY~~~i~P~l~~~e~ 114 (179)
+.+....+.|-+.|-.-+..+..|...|+.+++...++.-..|-...+..
T Consensus 116 ~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
T KOG1726|consen 116 VSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKA 165 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCcccccccc
Confidence 99999999999999999999999999999999999999999998866654
No 6
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=44.20 E-value=42 Score=24.44 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=27.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHhhhhhccCCCeeeecCC
Q 030361 140 EKYMQEHGTESFERLIAKTEREERSRKSNNYMIFDDD 176 (179)
Q Consensus 140 ~~~i~~~G~~afe~li~~~~~~~~~~~~~~~~~~~~~ 176 (179)
-++..-.|+|-.|+++.+..++. .|++ ++|-|||.
T Consensus 47 PkFLn~LGteIiEnAVefiLrSM-tR~t-gF~E~~dk 81 (88)
T PF15144_consen 47 PKFLNLLGTEIIENAVEFILRSM-TRST-GFMEFEDK 81 (88)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh-hccc-CceecCCC
Confidence 35667789999999999998854 4455 79999974
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.45 E-value=53 Score=32.44 Aligned_cols=32 Identities=13% Similarity=0.507 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHH
Q 030361 51 WLTYWVLYSMITLFELTFAKVLE-LITIWPYAK 82 (179)
Q Consensus 51 WL~YWvv~a~~~~~E~~~~~ll~-wiPfY~~~K 82 (179)
.+.+=++.+++.+++.++++=+. .-|+|-+++
T Consensus 30 ~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~ 62 (697)
T PF09726_consen 30 YVKFLLVWALVLLADFMLEFRFEYLWPFWLLLR 62 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444555555555554222 235555544
No 8
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=31.91 E-value=53 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHhHHHhH
Q 030361 7 NNNNFLQVVVNNFDVLAL 24 (179)
Q Consensus 7 ~~~~~l~~~~~~~~~l~~ 24 (179)
|+|++|++++.-+-.+++
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678888888776655543
No 9
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=31.09 E-value=56 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.1
Q ss_pred HHHHhHHHhHhHHHhHhhHHH
Q 030361 15 VVNNFDVLALPVVTLVYPLHA 35 (179)
Q Consensus 15 ~~~~~~~l~~~~ig~lYPay~ 35 (179)
...++-.+..+++|++.||..
T Consensus 6 aas~LPsI~VPlVGlvfPai~ 26 (38)
T PRK11877 6 AASWLPWIFVPLVGWVFPAVF 26 (38)
T ss_pred hHHhCchHHHHHHHHHHHHHH
Confidence 456777888899999999954
No 10
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=27.74 E-value=3.6e+02 Score=25.42 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHHhHHHhHhHHHhHhhHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHhccC
Q 030361 15 VVNNFDVLALPVVTLVYPLHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITI--WPYAKLIFSCWLVLP 92 (179)
Q Consensus 15 ~~~~~~~l~~~~ig~lYPay~S~kale~~~~~d~~~WL~YWvv~a~~~~~E~~~~~ll~wiPf--Y~~~Kl~fliwL~~P 92 (179)
..+.-...+..++..+-|...+.-=. +...++|+..|++.+...++ .+.|+|- ++..++++++-. .=
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~----~g~Rk~~~~~f~~i~i~~~~------~L~~i~~~s~~~~~l~~~il~-~i 127 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADY----PGPRKKFFGFFTAIGIISTF------LLWFIPPGSYLLLLLLFLILA-SI 127 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc----CCCcchHHHHHHHHHHHHHH------HHHHhCCCchHHHHHHHHHHH-HH
Confidence 33444555566666677766554322 22356888887777766654 5677777 777777776643 34
Q ss_pred ccchhhHHHHhhhcccccCcC
Q 030361 93 QFNGAAYVYRHFVRPFYMNPQ 113 (179)
Q Consensus 93 ~~~GA~~iY~~~i~P~l~~~e 113 (179)
-+++|...|+.++.....+.+
T Consensus 128 ~~~~s~Vfyds~L~~~~~k~~ 148 (438)
T COG2270 128 GFEFSNVFYDSMLPRLTTKDN 148 (438)
T ss_pred hcchhheehhhHhhhhcCccc
Confidence 579999999999987775543
No 11
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=24.97 E-value=51 Score=20.41 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.0
Q ss_pred HHhHHHhHhHHHhHhhHHH
Q 030361 17 NNFDVLALPVVTLVYPLHA 35 (179)
Q Consensus 17 ~~~~~l~~~~ig~lYPay~ 35 (179)
.++-.+..+++|++.||..
T Consensus 4 s~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 4 SNLPSILVPLVGLVFPAIA 22 (36)
T ss_pred ccCchhHHhHHHHHHHHHH
Confidence 4556677899999999954
No 12
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.14 E-value=36 Score=30.18 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=28.9
Q ss_pred HHHHHHhcHHHHHHHHHHHHhhhhhccCCCeeeecCCCCC
Q 030361 140 EKYMQEHGTESFERLIAKTEREERSRKSNNYMIFDDDYRY 179 (179)
Q Consensus 140 ~~~i~~~G~~afe~li~~~~~~~~~~~~~~~~~~~~~~~~ 179 (179)
++...++.++..|+.++...+.-....+ .|...||+|+|
T Consensus 43 d~~~~~~~~~~Ve~~l~~e~~~i~~~~~-d~a~WDDay~f 81 (295)
T COG3322 43 DEQALLENVELVENALDSEQKSIDRFVS-DWAFWDDAYRF 81 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHH
Confidence 3445667788888888887777776666 78888888864
No 13
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=23.76 E-value=1e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHH
Q 030361 134 DILTAAEKYMQEHGTESFERLIAKT 158 (179)
Q Consensus 134 d~~~~~~~~i~~~G~~afe~li~~~ 158 (179)
+.+..+.+++.++|++.-+++++..
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~ 26 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERE 26 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 3456678889999997555555543
No 14
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=22.54 E-value=44 Score=31.10 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.8
Q ss_pred CCCCCchhHHHH
Q 030361 2 GARGSNNNNFLQ 13 (179)
Q Consensus 2 ~~~~~~~~~~l~ 13 (179)
||.|||+|+++.
T Consensus 143 GGTGSGlGS~ll 154 (448)
T KOG1374|consen 143 GGTGSGLGSFLL 154 (448)
T ss_pred CCCCcchHHHHH
Confidence 899999997553
Done!