Query 030361
Match_columns 179
No_of_seqs 180 out of 655
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 41.5 23 0.00079 29.6 3.9 14 84-97 456-469 (491)
2 2ywr_A Phosphoribosylglycinami 28.2 43 0.0015 26.5 3.3 72 90-162 112-189 (216)
3 3nrb_A Formyltetrahydrofolate 21.3 55 0.0019 27.3 2.7 84 91-175 198-287 (287)
4 3obi_A Formyltetrahydrofolate 21.1 59 0.002 27.1 2.9 84 91-175 199-288 (288)
5 3qrx_B Melittin; calcium-bindi 21.1 61 0.0021 17.7 1.9 17 7-23 1-17 (26)
6 1jb0_I Photosystem 1 reaction 20.5 64 0.0022 19.3 2.1 19 17-35 8-26 (38)
7 1meo_A Phosophoribosylglycinam 19.3 80 0.0027 24.9 3.2 71 91-162 112-188 (209)
8 3da8_A Probable 5'-phosphoribo 14.4 1.4E+02 0.0047 23.8 3.4 71 91-162 122-198 (215)
9 3p9x_A Phosphoribosylglycinami 14.2 91 0.0031 24.8 2.3 72 91-163 114-191 (211)
10 3kcq_A Phosphoribosylglycinami 13.6 1.6E+02 0.0054 23.4 3.6 72 91-163 115-192 (215)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=41.52 E-value=23 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=10.7
Q ss_pred HHHHHhccCccchh
Q 030361 84 IFSCWLVLPQFNGA 97 (179)
Q Consensus 84 ~fliwL~~P~~~GA 97 (179)
++++|+.+|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 34568889999984
No 2
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.18 E-value=43 Score=26.51 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=45.5
Q ss_pred ccCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhh
Q 030361 90 VLPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREE 162 (179)
Q Consensus 90 ~~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~ 162 (179)
.+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+.+.+.|.+.+.+.++...+..
T Consensus 112 LLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 189 (216)
T 2ywr_A 112 LIPAFQGLHAQKQAVEFGVKFSGCTVHIVDE-SVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDR 189 (216)
T ss_dssp CTTTTCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcCCCCccHHHHHHHcCCCeEEEEEEEEcc-cCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999998888776531 111111 34443111222232344677888888899999999999999887653
No 3
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=21.25 E-value=55 Score=27.27 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=50.3
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREERS 164 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~~ 164 (179)
+|.++|+.-+.+.+.+-- +..-.. .+|..=.=.++.+.-..+|......+.+.+.+.+.+-++++...++.-.
T Consensus 198 LP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~-~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~ 276 (287)
T 3nrb_A 198 LPGFKGAKPYHQAHTRGVKLIGATAHFVTA-DLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRLI 276 (287)
T ss_dssp TTTTCSSCHHHHHHHHTCSEEEEEEEECCS-SSSCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCCchHHHHHHHcCCCeEEEEEEEECC-CCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 789999987766654431 000011 2343211122222234457777778888899999999999987766544
Q ss_pred ccCCCeeeecC
Q 030361 165 RKSNNYMIFDD 175 (179)
Q Consensus 165 ~~~~~~~~~~~ 175 (179)
..+|.-.+|+|
T Consensus 277 ~~~~~~~vf~~ 287 (287)
T 3nrb_A 277 VNGERTVVFAD 287 (287)
T ss_dssp EETTEEEECCC
T ss_pred EcCCEEEEcCC
Confidence 44555566764
No 4
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.13 E-value=59 Score=27.07 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=50.4
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREERS 164 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~~ 164 (179)
+|.++|+.-+.+.+.+-- +..-.. .+|..=.=.++.+.-..+|......+.+.+.+.+.+-++++....+.-.
T Consensus 199 LP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~-~~D~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~ 277 (288)
T 3obi_A 199 LPGFKGAKPYHQAFDRGVKLIGATAHYVTS-ALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 277 (288)
T ss_dssp SSCCCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCCchHHHHHHHcCCCEEEEEEEEECC-CCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 799999987766654431 111111 3343221122223234457777778888999999999999987766544
Q ss_pred ccCCCeeeecC
Q 030361 165 RKSNNYMIFDD 175 (179)
Q Consensus 165 ~~~~~~~~~~~ 175 (179)
..+|.-.+|+|
T Consensus 278 ~~~~~~~vf~~ 288 (288)
T 3obi_A 278 LNGRKTVVFTD 288 (288)
T ss_dssp EETTEEEECCC
T ss_pred EcCCEEEEcCC
Confidence 44445566654
No 5
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=21.12 E-value=61 Score=17.67 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHhHHHh
Q 030361 7 NNNNFLQVVVNNFDVLA 23 (179)
Q Consensus 7 ~~~~~l~~~~~~~~~l~ 23 (179)
|+|+.|+++..-+-.++
T Consensus 1 giGa~LKVLa~~LP~li 17 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALI 17 (26)
T ss_pred CchHHHHHHHccchHHH
Confidence 67777887766554443
No 6
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=20.55 E-value=64 Score=19.33 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHhHHHhHhHHHhHhhHHH
Q 030361 17 NNFDVLALPVVTLVYPLHA 35 (179)
Q Consensus 17 ~~~~~l~~~~ig~lYPay~ 35 (179)
.++-.+..+++|++.||..
T Consensus 8 ~~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHH
Confidence 3456677899999999954
No 7
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=19.27 E-value=80 Score=24.91 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=43.7
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREE 162 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~ 162 (179)
+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+.+.+.|.+.+.+.++...+..
T Consensus 112 LP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 188 (209)
T 1meo_A 112 LPSFKGSNAHEQALETGVTVTGCTVHFVAE-DVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGT 188 (209)
T ss_dssp TTSSCSSCHHHHHHHHTCSEEEEEEEECCC----CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcCCCCccHHHHHHHcCCCcEEEEEEEECC-CCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 689999988887776431 111111 34433111222232344577788888899999999999998887654
No 8
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=14.38 E-value=1.4e+02 Score=23.79 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=44.6
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREE 162 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~ 162 (179)
+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+.+.+.|.+.+.+.++...+..
T Consensus 122 LP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 198 (215)
T 3da8_A 122 LPAFPGTHGVADALAYGVKVTGATVHLVDA-GTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHG 198 (215)
T ss_dssp TTSSCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCchHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 688999988877766531 111111 33432211222332344677788888899999999999999877654
No 9
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=14.18 E-value=91 Score=24.82 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=46.1
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREER 163 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~ 163 (179)
+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+++.+.|.+.+.+.++...+...
T Consensus 114 LP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~ 191 (211)
T 3p9x_A 114 LPAFPGLHAIEQAIRANVKVTGVTIHYVDE-GMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSKAE 191 (211)
T ss_dssp TTSSCSSCHHHHHHHTTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred CCCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 689999988887776531 111111 334322112223323456788888888999999999999998876655
No 10
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=13.56 E-value=1.6e+02 Score=23.42 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=45.5
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREER 163 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~ 163 (179)
+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+++.+.+.+.+.+.++...+..-
T Consensus 115 LP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~-~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~e~~ll~~~l~~~~~g~~ 192 (215)
T 3kcq_A 115 LPSFKGLNAQEQAYKAGVKIAGCTLHYVYQ-ELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDKI 192 (215)
T ss_dssp TTTTCSSCHHHHHHHHTCSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCCCCccHHHHHHHcCCCeEEEEEEEEcC-CCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 689999988877766531 111111 344322112223323446788888888999999999999998876543
Done!