Query 030361
Match_columns 179
No_of_seqs 180 out of 655
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 20:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.8 24 0.0017 18.0 1.9 18 21-38 5-22 (27)
2 d1meoa_ c.65.1.1 (A:) Glycinam 15.8 61 0.0044 23.4 3.6 82 91-173 112-199 (205)
3 d2j5ya1 a.8.1.2 (A:1-53) PAB { 14.7 49 0.0035 19.5 2.2 33 116-158 1-35 (53)
4 d2dt7b1 a.217.1.1 (B:134-217) 14.6 89 0.0065 19.6 3.8 25 133-157 31-55 (84)
5 d1p3da1 c.5.1.1 (A:11-106) UDP 12.8 48 0.0035 21.2 2.0 17 2-18 15-31 (96)
6 d1nekd_ f.21.2.2 (D:) Succinat 12.7 30 0.0022 22.9 0.9 32 76-107 53-84 (113)
7 d1tubb1 c.32.1.1 (B:1-245) Tub 12.1 52 0.0038 24.8 2.3 16 2-17 141-156 (243)
8 d1fmta2 c.65.1.1 (A:1-206) Met 12.0 63 0.0046 22.9 2.7 70 91-161 114-189 (206)
9 d1iiea_ a.109.1.1 (A:) Class I 11.1 58 0.0042 20.7 1.9 14 47-60 47-60 (75)
10 d1tuba1 c.32.1.1 (A:1-245) Tub 10.1 38 0.0028 25.8 0.8 15 2-16 143-157 (245)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.82 E-value=24 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=12.9
Q ss_pred HHhHhHHHhHhhHHHHHH
Q 030361 21 VLALPVVTLVYPLHASIK 38 (179)
Q Consensus 21 ~l~~~~ig~lYPay~S~k 38 (179)
.+...+.|+.|-||+-+|
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 344567788888888765
No 2
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.81 E-value=61 Score=23.36 Aligned_cols=82 Identities=9% Similarity=0.068 Sum_probs=48.0
Q ss_pred cCccchhhHHHHhhhccc------ccCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhh
Q 030361 91 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREERS 164 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~~~~ 164 (179)
+|.++|+.-+...++.-- +..-.+ .+|..-.=.++.+--..+|......+++.+.+.+.+.+.++...+..-.
T Consensus 112 LP~~rG~~~~~~ai~~g~~~~G~tih~v~~-~iD~G~Ii~q~~~~I~~~dt~~~L~~k~~~~~~~l~~~~l~~i~~g~i~ 190 (205)
T d1meoa_ 112 LPSFKGSNAHEQALETGVTVTGCTVHFVAE-DVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQ 190 (205)
T ss_dssp TTSSCSSCHHHHHHHHTCSEEEEEEEECCC----CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred cchhhhhhhHHHHHhcCCcccceeEEeecC-CCCCCcEeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 688999988777665421 111111 3444322222333234567778888889999999999999888775543
Q ss_pred ccCCCeeee
Q 030361 165 RKSNNYMIF 173 (179)
Q Consensus 165 ~~~~~~~~~ 173 (179)
...|+-..|
T Consensus 191 ~~~~~~i~~ 199 (205)
T d1meoa_ 191 LGENGKICW 199 (205)
T ss_dssp ECTTSSEEE
T ss_pred ECCCCeEEe
Confidence 333444444
No 3
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=14.70 E-value=49 Score=19.49 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=18.6
Q ss_pred cchhhhhhhhhhhhhchhHHHHHHHHHHHHhc--HHHHHHHHHHH
Q 030361 116 SSKIWYVPRKKNIFRQQDDILTAAEKYMQEHG--TESFERLIAKT 158 (179)
Q Consensus 116 ~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G--~~afe~li~~~ 158 (179)
+||.|++..-+ ..+-..++++| .+.+.++|+.+
T Consensus 1 tid~~~Lk~AK----------e~AI~eLK~~GIts~~y~~~Inka 35 (53)
T d2j5ya1 1 TIDQWLLKNAK----------EDAIAELKKAGITSDFYFNAINKA 35 (53)
T ss_dssp CHHHHHHHHHH----------HHHHHHHHHTTCCCHHHHHHHHHC
T ss_pred ChhHHHHHHHH----------HHHHHHHHHcCccHHHHHHHHHhh
Confidence 36777655322 33344566777 46667777654
No 4
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=89 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHH
Q 030361 133 DDILTAAEKYMQEHGTESFERLIAK 157 (179)
Q Consensus 133 ~d~~~~~~~~i~~~G~~afe~li~~ 157 (179)
.|.+....+++.++|.+.-.++++.
T Consensus 31 l~iI~~tA~fVa~~G~~fe~~l~~~ 55 (84)
T d2dt7b1 31 LDVVKLTAQFVARNGRQFLTQLMQK 55 (84)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 4788899999999999755555544
No 5
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=12.76 E-value=48 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=10.8
Q ss_pred CCCCCchhHHHHHHHHH
Q 030361 2 GARGSNNNNFLQVVVNN 18 (179)
Q Consensus 2 ~~~~~~~~~~l~~~~~~ 18 (179)
|-.||||.++..++...
T Consensus 15 GigG~GMs~LA~~L~~~ 31 (96)
T d1p3da1 15 GIGGAGMSGIAEILLNE 31 (96)
T ss_dssp TTTSTTHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHhC
Confidence 66788888655544443
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=12.74 E-value=30 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhccCccchhhHHHHhhhcc
Q 030361 76 TIWPYAKLIFSCWLVLPQFNGAAYVYRHFVRP 107 (179)
Q Consensus 76 PfY~~~Kl~fliwL~~P~~~GA~~iY~~~i~P 107 (179)
|.-..+=+++++-+......|-..|-+.+++|
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 44444445555555555567888888888775
No 7
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=12.07 E-value=52 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=11.2
Q ss_pred CCCCCchhHHHHHHHH
Q 030361 2 GARGSNNNNFLQVVVN 17 (179)
Q Consensus 2 ~~~~~~~~~~l~~~~~ 17 (179)
||.|||.|+.+.=.++
T Consensus 141 GGTGSGlGs~l~e~L~ 156 (243)
T d1tubb1 141 GGTGSGMGTLLISKIR 156 (243)
T ss_dssp CSTTTTTHHHHHHHHH
T ss_pred CccccchHHHHHHHHh
Confidence 8899999975554433
No 8
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=11.97 E-value=63 Score=22.92 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=44.3
Q ss_pred cCccchhhHHHHhhhccc--c----cCcCcccchhhhhhhhhhhhhchhHHHHHHHHHHHHhcHHHHHHHHHHHHhh
Q 030361 91 LPQFNGAAYVYRHFVRPF--Y----MNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTERE 161 (179)
Q Consensus 91 ~P~~~GA~~iY~~~i~P~--l----~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~afe~li~~~~~~ 161 (179)
+|+++|+.-+...++.-- . ..-.. .+|..=.=.++.+--..+|....+.+.+.+.+.+.+.++++...+.
T Consensus 114 LP~yRG~~pi~wai~nge~~~GvT~h~i~~-~iD~G~Ii~q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~~ 189 (206)
T d1fmta2 114 LPRWRGAAPIQRSLWAGDAETGVTIMQMDV-GLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADG 189 (206)
T ss_dssp TTTTBSSCHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhhhhhhhhhHHHcCCceeceeEEEecc-ccChHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 688999988888877532 1 11111 3444322222333344456677777788999999999988887754
No 9
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.12 E-value=58 Score=20.66 Aligned_cols=14 Identities=29% Similarity=0.918 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHH
Q 030361 47 DDQQWLTYWVLYSM 60 (179)
Q Consensus 47 d~~~WL~YWvv~a~ 60 (179)
+...|+.+|.+|-+
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999988754
No 10
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.09 E-value=38 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=10.3
Q ss_pred CCCCCchhHHHHHHH
Q 030361 2 GARGSNNNNFLQVVV 16 (179)
Q Consensus 2 ~~~~~~~~~~l~~~~ 16 (179)
||.|||+|+.+.=.+
T Consensus 143 GGTGSGlGs~l~e~l 157 (245)
T d1tuba1 143 GGTGSGFTSLLMERL 157 (245)
T ss_dssp CGGGTHHHHHHTHHH
T ss_pred CcCcCchhHHHHHHH
Confidence 788999996544333
Done!