Query 030362
Match_columns 179
No_of_seqs 107 out of 517
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_I Cytochrome B-C1 complex 20.0 40 0.0014 21.6 1.3 27 144-170 17-43 (65)
2 2ks1_B Epidermal growth factor 19.7 23 0.00079 21.0 0.0 14 145-158 15-28 (44)
3 2l2t_A Receptor tyrosine-prote 14.9 34 0.0012 20.3 -0.0 14 145-158 14-27 (44)
4 1pp9_J Ubiquinol-cytochrome C 14.6 75 0.0026 20.1 1.5 28 143-170 20-47 (62)
5 3lti_A DNA-directed RNA polyme 10.5 80 0.0027 26.2 0.9 28 115-142 33-64 (296)
6 3dsh_A IRF-5, interferon regul 9.6 1.7E+02 0.0057 23.5 2.5 29 45-85 164-192 (246)
7 3arc_X Photosystem II PSBX pro 7.6 1.3E+02 0.0044 17.3 0.7 19 135-155 4-22 (39)
8 1y8q_A Ubiquitin-like 1 activa 7.4 59 0.002 27.0 -1.2 12 141-152 299-310 (346)
9 3r8s_F 50S ribosomal protein L 6.4 3.1E+02 0.011 20.8 2.6 25 124-148 82-106 (177)
10 1mji_A 50S ribosomal protein L 6.0 3.1E+02 0.011 20.9 2.4 25 124-148 86-110 (182)
No 1
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=19.96 E-value=40 Score=21.63 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=18.5
Q ss_pred HhhhccceeeehhhhHHHHHHHHHHHc
Q 030362 144 LCAVLGGTFALTGMLDRWMYRLLEALT 170 (179)
Q Consensus 144 lcaIiGGvftv~gliD~~~~~~~~~~~ 170 (179)
+.+|++|.|+.-..+|...-.+.+.++
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~~N 43 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYENHN 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 567888888777777776666555543
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.70 E-value=23 Score=21.03 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=9.1
Q ss_pred hhhccceeeehhhh
Q 030362 145 CAVLGGTFALTGML 158 (179)
Q Consensus 145 caIiGGvftv~gli 158 (179)
.+++||++.++-++
T Consensus 15 ~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 15 TGMVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 36677777766555
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=14.87 E-value=34 Score=20.30 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=9.4
Q ss_pred hhhccceeeehhhh
Q 030362 145 CAVLGGTFALTGML 158 (179)
Q Consensus 145 caIiGGvftv~gli 158 (179)
.+++||++.++-+.
T Consensus 14 ~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 14 AGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHH
Confidence 46777877766555
No 4
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=14.56 E-value=75 Score=20.14 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=19.2
Q ss_pred hHhhhccceeeehhhhHHHHHHHHHHHc
Q 030362 143 RLCAVLGGTFALTGMLDRWMYRLLEALT 170 (179)
Q Consensus 143 ~lcaIiGGvftv~gliD~~~~~~~~~~~ 170 (179)
=+.+|++|.|+.-..+|.....+.+.++
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~~N 47 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 3567888888877777777666555543
No 5
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=10.48 E-value=80 Score=26.19 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=16.0
Q ss_pred ceEEEEEEccc---eEEEEEeee-ccHHHHHH
Q 030362 115 PAVYFLYDLSP---ITVTIKEER-RSFLHLIT 142 (179)
Q Consensus 115 PgI~F~Yd~sP---i~v~~~~~r-~s~~~flt 142 (179)
-|-|+.|++.+ +-|.+...| -|..-||-
T Consensus 33 RGsWlefe~d~~d~~~vrIdr~rK~p~t~lLr 64 (296)
T 3lti_A 33 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 64 (296)
T ss_dssp BSCCEEEEECTTSCEEEEETTCCCEETHHHHH
T ss_pred CCceEEEEEcCCCeEEEEEcCcccchHHHHHH
Confidence 45666666665 566675555 35444443
No 6
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=9.63 E-value=1.7e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.487 Sum_probs=18.2
Q ss_pred eEeeeCCCCCCCCCCCCCceeeecCCceeEEEEEEEEEEEE
Q 030362 45 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 85 (179)
Q Consensus 45 ~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y 85 (179)
=.|.||++.|.. .|...+-.+ +||||+.-
T Consensus 164 I~LcFGEe~pd~-~p~ekkLI~-----------VqV~p~~a 192 (246)
T 3dsh_A 164 IFFCFGEEWPDR-KPREKKLIT-----------VQVVPVAA 192 (246)
T ss_dssp EEEEESSCSSCS-SCGGGCSEE-----------EEEEEHHH
T ss_pred EEEEECCcCCCC-CcccccEEE-----------EEEEHHHH
Confidence 468999998853 355433221 55888765
No 7
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=7.62 E-value=1.3e+02 Score=17.32 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=12.8
Q ss_pred ccHHHHHHhHhhhccceeeeh
Q 030362 135 RSFLHLITRLCAVLGGTFALT 155 (179)
Q Consensus 135 ~s~~~flt~lcaIiGGvftv~ 155 (179)
+|+..||.++.| ||+..++
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH
Confidence 578889888854 5655444
No 8
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=7.37 E-value=59 Score=27.00 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=8.7
Q ss_pred HHhHhhhcccee
Q 030362 141 ITRLCAVLGGTF 152 (179)
Q Consensus 141 lt~lcaIiGGvf 152 (179)
|..+|||+||+.
T Consensus 299 l~pv~AiiGGi~ 310 (346)
T 1y8q_A 299 MAPVCAVVGGIL 310 (346)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 556778888865
No 9
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=6.42 E-value=3.1e+02 Score=20.75 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 030362 124 SPITVTIKEERRSFLHLITRLCAVL 148 (179)
Q Consensus 124 sPi~v~~~~~r~s~~~flt~lcaIi 148 (179)
.||.+++|-.....++||-++..++
T Consensus 82 ~piG~kVTLRg~~m~~FL~kli~~v 106 (177)
T 3r8s_F 82 YPIGCKVTLRGERMWEFFERLITIA 106 (177)
T ss_dssp CEEEEEEEECSHHHHHHHHHHHHTT
T ss_pred CEeeEEEEEccHHHHHHHHHHHHHh
Confidence 3999999999999999999998774
No 10
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=6.04 E-value=3.1e+02 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 030362 124 SPITVTIKEERRSFLHLITRLCAVL 148 (179)
Q Consensus 124 sPi~v~~~~~r~s~~~flt~lcaIi 148 (179)
.||.+++|-.....++||-+++.++
T Consensus 86 ~pIG~kVTLRg~~my~FL~rll~v~ 110 (182)
T 1mji_A 86 MPIGLRVTLRRDRMWIFLEKLLNVA 110 (182)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEEccHHHHHHHHHHHHHh
Confidence 5889999999999999999998873
Done!