Query 030362
Match_columns 179
No_of_seqs 107 out of 517
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 20:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030362.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030362hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5i1 f.23.14.1 (I:4-58) Sub 15.1 30 0.0022 20.1 1.3 27 144-170 15-41 (55)
2 d1vg0a1 c.3.1.3 (A:3-444,A:558 13.1 41 0.003 27.7 2.1 26 136-161 377-402 (491)
3 d1l9la_ a.64.1.1 (A:) Granulys 12.8 65 0.0047 18.8 2.5 38 135-172 24-63 (74)
4 d1ppjw_ f.23.14.1 (W:) Subunit 11.6 49 0.0036 19.5 1.5 27 144-170 21-47 (62)
5 d1qwta_ b.26.1.3 (A:) Interfer 10.3 1E+02 0.0075 22.6 3.4 30 45-86 156-185 (239)
6 d1a04a2 c.23.1.1 (A:5-142) Nit 7.3 1.6E+02 0.012 18.6 3.2 31 124-154 1-31 (138)
7 d1s3si_ d.15.1.2 (I:) p47 {Rat 6.6 36 0.0026 19.3 -0.7 12 36-47 34-45 (50)
8 d1iq4a_ d.77.1.1 (A:) Ribosoma 6.5 1.3E+02 0.0096 20.9 2.4 25 124-148 83-107 (179)
9 d1mjia_ d.77.1.1 (A:) Ribosoma 6.5 1.3E+02 0.0098 20.9 2.4 25 124-148 84-108 (180)
10 d1n69a_ a.64.1.3 (A:) Saposin 6.3 2.2E+02 0.016 16.2 3.2 37 136-172 27-65 (78)
No 1
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.12 E-value=30 Score=20.07 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=17.8
Q ss_pred HhhhccceeeehhhhHHHHHHHHHHHc
Q 030362 144 LCAVLGGTFALTGMLDRWMYRLLEALT 170 (179)
Q Consensus 144 lcaIiGGvftv~gliD~~~~~~~~~~~ 170 (179)
+.+|++|.|+.=..+|.....+-+..+
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~N 41 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHN 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888777666666665555443
No 2
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.06 E-value=41 Score=27.70 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=19.1
Q ss_pred cHHHHHHhHhhhccceeeehhhhHHH
Q 030362 136 SFLHLITRLCAVLGGTFALTGMLDRW 161 (179)
Q Consensus 136 s~~~flt~lcaIiGGvftv~gliD~~ 161 (179)
-+.+=.-|+||+-||+|++-.-|+.+
T Consensus 377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i 402 (491)
T d1vg0a1 377 ELPQCFCRMCAVFGGIYCLRHSVQCL 402 (491)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEE
T ss_pred hHHHHHHHHHHhcCcEEEcCCccceE
Confidence 45566678999999999877655544
No 3
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.83 E-value=65 Score=18.80 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=30.7
Q ss_pred ccHHHHHHhHhhhccceee--ehhhhHHHHHHHHHHHcCC
Q 030362 135 RSFLHLITRLCAVLGGTFA--LTGMLDRWMYRLLEALTKP 172 (179)
Q Consensus 135 ~s~~~flt~lcaIiGGvft--v~gliD~~~~~~~~~~~k~ 172 (179)
..+.+.+-++|..+++-+. +-.++|...-.+.+.+.+.
T Consensus 24 ~~I~~~l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l~~~ 63 (74)
T d1l9la_ 24 RSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAG 63 (74)
T ss_dssp HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5688999999999998653 7788888888888877554
No 4
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.59 E-value=49 Score=19.53 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=17.3
Q ss_pred HhhhccceeeehhhhHHHHHHHHHHHc
Q 030362 144 LCAVLGGTFALTGMLDRWMYRLLEALT 170 (179)
Q Consensus 144 lcaIiGGvftv~gliD~~~~~~~~~~~ 170 (179)
+.+|++|.|..=..+|.....+.+..+
T Consensus 21 ~~tI~~gAf~fE~~fD~~~d~iwe~~N 47 (62)
T d1ppjw_ 21 ALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888776666666655544443
No 5
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.32 E-value=1e+02 Score=22.60 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEeeeCCCCCCCCCCCCCceeeecCCceeEEEEEEEEEEEEE
Q 030362 45 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEYR 86 (179)
Q Consensus 45 ~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y~ 86 (179)
=.|.||++.|.. .|++..-.+ ++|||+.-+
T Consensus 156 i~lcFGeewpd~-~p~ekkLI~-----------VqV~p~~ar 185 (239)
T d1qwta_ 156 LWFCVGESWPQD-QPWTKRLVM-----------VKVVPTCLR 185 (239)
T ss_dssp EEEEECCSCTTC-CTTTTCCEE-----------EEEEEHHHH
T ss_pred EEEEeccccCCC-CCcccceEE-----------EEEEHHHHH
Confidence 369999998743 476665322 558887653
No 6
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=7.34 E-value=1.6e+02 Score=18.58 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=26.5
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhccceeee
Q 030362 124 SPITVTIKEERRSFLHLITRLCAVLGGTFAL 154 (179)
Q Consensus 124 sPi~v~~~~~r~s~~~flt~lcaIiGGvftv 154 (179)
.|++|.+-++...+..-+.+++.-.|++..+
T Consensus 1 ePi~VLiVDD~~~~r~~l~~~L~~~~~~~~v 31 (138)
T d1a04a2 1 EPATILLIDDHPMLRTGVKQLISMAPDITVV 31 (138)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCcEEE
Confidence 5999999999988888888888888877765
No 7
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.55 E-value=36 Score=19.32 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=6.2
Q ss_pred cccccceEEeEe
Q 030362 36 KNVNVSHVIHDL 47 (179)
Q Consensus 36 ~~~N~sH~I~~l 47 (179)
.+||.||+|..+
T Consensus 34 ~rFN~~Htv~di 45 (50)
T d1s3si_ 34 QKFNHSHRISDI 45 (50)
T ss_dssp ----CCCCHHHH
T ss_pred EEccCccCHHHH
Confidence 469999998643
No 8
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.50 E-value=1.3e+02 Score=20.90 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.4
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 030362 124 SPITVTIKEERRSFLHLITRLCAVL 148 (179)
Q Consensus 124 sPi~v~~~~~r~s~~~flt~lcaIi 148 (179)
.|+.+++|-.+...+.||-+++.++
T Consensus 83 ~piG~kVTLRg~~m~~FL~rli~iv 107 (179)
T d1iq4a_ 83 MPIGAKVTLRGERMYEFLDKLISVS 107 (179)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred ceeEEEeeeccchHHHHHHHHHHhc
Confidence 4889999999999999999999875
No 9
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=6.46 E-value=1.3e+02 Score=20.92 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.5
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 030362 124 SPITVTIKEERRSFLHLITRLCAVL 148 (179)
Q Consensus 124 sPi~v~~~~~r~s~~~flt~lcaIi 148 (179)
.|+.++++-.+...+.||-+++.++
T Consensus 84 ~piG~kvTLRg~~m~~FL~rli~i~ 108 (180)
T d1mjia_ 84 MPIGLRVTLRRDRMWIFLEKLLNVA 108 (180)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CceeEEEeecHHHHHHHHHHHHHHH
Confidence 5899999999999999999998774
No 10
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.30 E-value=2.2e+02 Score=16.22 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=29.3
Q ss_pred cHHHHHHhHhhhcccee--eehhhhHHHHHHHHHHHcCC
Q 030362 136 SFLHLITRLCAVLGGTF--ALTGMLDRWMYRLLEALTKP 172 (179)
Q Consensus 136 s~~~flt~lcaIiGGvf--tv~gliD~~~~~~~~~~~k~ 172 (179)
-+..++-++|..+++-+ .+-.++|...-.+.+.+.+.
T Consensus 27 ~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~~ 65 (78)
T d1n69a_ 27 ALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHM 65 (78)
T ss_dssp HHHHHHHHHGGGGCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCChHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 36788999999999765 47888888888888887653
Done!