BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030364
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 113/168 (67%), Positives = 134/168 (79%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA NK+I KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F+IWDTAGQERYHSLAPMYYRG +D+T+ SFERAKKWVQELQ QGNPN++M L
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
NK DL + RKV E+ + YAQENGL F+ETSAK+A NV E+FYEI
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/159 (62%), Positives = 122/159 (76%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
Q KLVLLG+ GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ERYHSLAPMYYRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
KR V+ +E + YA +N L F+ETSAK+A NVNE+F I
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 63 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 126/165 (76%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
+++K Q KLVLLG+ GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+I
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
WDTAGQERYHSLAPMYYRG YDIT+ ++F RAK WV+ELQRQ +P++++ L N
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
K DL KR V+ EE + YA +N L F+ETSAK+A NVN+LF I
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 166
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 121/159 (76%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
Q KLVLLG+ GK+SLVLRFVKGQF ++QESTI AAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ERYHSLAPMYYRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
KR V+ +E + YA +N L F+ETSAK+A NVNE+F I
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 121/159 (76%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
Q KLVLLG+ GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ERYHSLAPMYYRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
KR V+ +E + YA +N L F+ETSAK+A NVNE+F I
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 213 bits (542), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2 NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 213 bits (541), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 122/163 (74%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAG ERYHSLAPMYYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F+ETSAK++ NVNE+F I
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 121/163 (74%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
NK Q KLVLLG+ GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERYHSLAP YYRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK
Sbjct: 63 TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
DL KR V +E + YA +N L F ETSAK++ NVNE+F I
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 115/162 (70%), Gaps = 3/162 (1%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+KLVLLG+ GK+S+VLRFV F + +E TIGAAF TQ +++NE T+KF+IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD-LEE 129
R+ SLAP YYR YD+T SF +A+ WV+EL Q + ++I+ LV NK+D L+E
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 130 --KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
+RKV EEGE A+E GL F ETSAK+ NVN++F IG+
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 101/158 (63%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++K+ LLGD G GK+S+V RFV+ F TIGA+F T+ + KF IWDTAGQ
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ER+HSLAPMYYRG YDIT DSF KKWV+EL+ G N++M + NK DL +
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V ++ + YA+ G +ETSAK+A N+ ELF I
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 101/158 (63%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++K+ LLGD G GK+S+V RFV+ F TIGA+F T+ + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ER+ +LAPMYYRG YDIT ++F K WV+EL++ G P++++ + NK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V + + YA F+ETSAK+A N+NELF EI
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 97/157 (61%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + D STIG F + +SL T+K IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T DSF+ K+W+QE+ R N+ LV NK DL KR
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
V ++EG A +G+ F+ETSAK+A+NV + F+ +
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMA 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++K+ LLGD G GK+S++ RFV+ F TIGA+F T+ + KF IWDTAG
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
ER+ +LAPMYYRG YDIT ++F K WV+EL++ G P++++ + NK DL +
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V + + YA F+ETSAK+A N+NELF EI
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 99/153 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++GD G GK+ L+L+F +F + TIG F ++++++ IK IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDIT D+F W+++ ++ N N+++ L+ NK DLE +R
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
+VK EEGE +A+E+GL F+ETSAK+A NV E F
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 99/156 (63%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VLLG+ GKTSLVLR+ + +F D +T+GA+F T+ L++ + IWDTAGQER
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+H+L P+YYR YDIT DSF++ K WV+EL++ + + +V NK+DLE++R
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
V +E E YA+ G TSAK + ELF ++
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 102/157 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + TI+ +WDTAGQER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 102/159 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170
++ EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASA 162
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 102/157 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 100/157 (63%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+ +SF + KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 101/157 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + TI+ +WDTAG ER
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 98/156 (62%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VLLG+ GKTSLVLR+ + +F D +T+ A+F T+ L++ + IWDTAGQER
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+H+L P+YYR YDIT DSF++ K WV+EL++ + + +V NK+DLE++R
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
V +E E YA+ G TSAK + ELF ++
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 98/153 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++GD G GK+ L+L+F +F + TIG F ++++++ IK IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDIT ++F W+++ ++ + N+++ L+ NK DLE +R
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
VK EEGE +A+E+GL F+ETSAK+A NV E F
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 101/157 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAG ER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 98/156 (62%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VLLG+ GKTSLVLR+ + +F D +T+ A+F T+ L++ + IWDTAGQER
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+H+L P+YYR YDIT DSF++ K WV+EL++ + + +V NK+DLE++R
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
V +E E YA+ G TSAK + ELF ++
Sbjct: 142 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 101/157 (64%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAG ER
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V EEGE A+E + F+ETSAK+ +NV +LF +
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQER
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
V +E +A++NGLSF+ETSA + NV F I TE + +
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIYRI 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
V +E +A++NGLSF+ETSA + NV F I TE +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 191
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y + YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
V +E +A++N LSF+ETSA + NV E F I TE + +
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI--LTEIYRI 169
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 92/153 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV LG+ GKTS++ RF F + +STIG F ++ L L+E ++ +WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ SL P Y R YDIT+ SFE KW+Q++ + ++I+ LV NK DL + R
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
KV EEG AQE F ETSAK+ HN+ LF
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF K +F +STIG F T+ L + IK IWDTAGQER
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI+ S+E W+ EL+ + N+ + L+ NK DL R
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
V EE + +AQEN L F ETSA ++ NV++ F E+
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ER
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
V +E +A++NGLSF+ETSA + NV F I TE + +
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIYRI 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++GDMG GK+ L+ +F + +F TIG F T+++ ++ IK IWDTAGQER
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YDIT ++ W+ + + NPN ++ L+ NK DLE +R
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
V EE + +A+ENGL FLE SAK+ NV + F E
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
V +E +A++NGLSF+ETSA + NV F I TE +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 191
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE 70
K+VL+GD G GK++L+ RF + +F +STIG F T+ + L N IK IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
RY ++ YYRG YDIT +SFE +KW++EL+ + N+++ LV NK DL+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R + + + YA++ L+F+ETSA A NV F+++
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
V +E +A++NGLSF+ETSA + NV F I TE +
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI ++E ++W++EL+ + N+++ LV NK DL R
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
V +E +A++NGLSF+ETSA + NV F I TE +
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 167
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 96/157 (61%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+G+ G GKT LV RF +G F Q +TIG F + + +N +K IWDTAGQER
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYR YDIT +SF +W++E+++ + +I LV NK+DL E+R
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V + E +++ + +LETSAK + NV +LF ++
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +S+ K+W+QE+ R + N+ LV NK DL K+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V N + +A G+ FLETSAK+A NV + F
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +S+ K+W+QE+ R + N+ LV NK DL K+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V N + +A G+ FLETSAK+A NV + F
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++GDMG GK+ L+ +F + +F TIG F T+++ ++ IK IWDTAGQ R
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YDIT ++ W+ + + NPN ++ L+ NK DLE +R
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
V EE + +A+ENGL FLE SAK+ NV + F E
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 186
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 105/195 (53%), Gaps = 40/195 (20%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL----------------- 54
K VLLG+ GK+S+VLR K F + +TIGA+F T V++L
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55 --------------------NEVTIKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITS 94
N IKFDIWDTAGQERY S+ P+YYRG +DI++
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95 MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154
++ +RAK WV +L+ N I+ LVANK+D + K +V E + YAQ+N L F++TSA
Sbjct: 129 SNTLDRAKTWVNQLKIS--SNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KSAHNVNELFYEIGD 169
K+ N+ +FY + +
Sbjct: 186 KTGTNIKNIFYMLAE 200
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 90/153 (58%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N K+VL+G+ G GKT+L+ RF + +F +TIG F T+ + L +K IWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
G ERY ++ YYRG +D+T ++ ++W++EL +++ LV NK DL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
+ R+V EE ++A+ NGL FLETSA + NV EL +E
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNV-ELAFE 165
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N K+VL+G+ G GKT+L+ RF + +F +TIG F T+ + L +K IWDTA
Sbjct: 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
G ERY ++ YYRG +D+T ++ ++W++EL +++ LV NK DL
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
+ R+V EE ++A+ NGL FLETSA + NV EL +E
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNV-ELAFE 180
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 90/153 (58%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K+W+QE+ R + N+ LV K DL K+
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V + +A G+ FLETSAK+A NV + F
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDT 66
++ K++L+GD G GKT L++RF G F ST+G F +VL ++ V +K +WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
AGQER+ S+ YYR YD+T+ SF+ + W+ E+ ++ + L+ NKVD
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+R VK E+GE A+E GL F+ETSAK+ NV+ F I
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 95/164 (57%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
+ R S + KL+L+G+ G GK+ L+LRF + + STIG F + + L+ T+K
Sbjct: 12 VPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK 71
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
IWDTAGQER+ ++ YYRG YD+T +SF K W+QE+ R ++ L
Sbjct: 72 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V NK DL++KR V+ + + +A N + FLETSA + NV + F
Sbjct: 132 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 125 bits (315), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+G+ G GK+ L+LRF + + STIG F + + L+ T+K IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K W+QE+ R ++ LV NK DL++KR
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V+ + + +A N + FLETSA + NV + F
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 91/153 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+G+ G GK+ L+LRF + + STIG F + + L+ T+K IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +SF K W+QE+ R ++ LV NK DL++KR
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V+ + + +A N + FLETSA + NV + F
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 93/153 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++G GTGK+ L+ +F++ +F TIG F ++V+++ T+K IWDTAGQER
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDITS +++ W+ + + +PN+++ L NK DL+ +R
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
+V E +AQEN L FLETSA + NV E F
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K++L+GD G GK+ L++RFV+ +F +TIG F + + +N +K IWDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
R+ ++ YYRG YDIT +F K+W + + N + LV NK D+ E
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
R V ++GE A+E G+ F+E+SAK+ NVNE+F+ +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL+GD G GK++L+ RF +F +STIG F T+ + + IK IWDTAG ER
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI+ S+E W+ EL+ + N+ + L+ NK DL R
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
V +E + +A EN + F ETSA ++ NV++ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++L+GD G GK+ L++RFV+ +F +TIG F + + +N +K IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YDIT +F K+W + + N + LV NK D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
V ++GE A+E G+ F+E+SAK+ NVNE+F+ +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GKT ++ RF + F STIG F + + L+ IK IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YDIT+ SF+ + W++ ++ + ++ ++ NK D+ +KR
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V E GE A + G+ F+ETSAK+ NV F+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+GD G GKT ++ RF + F STIG F + + L+ IK IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YDIT+ SF+ + W++ ++ + ++ ++ NK D+ +KR
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
+V E GE A + G+ F+ETSAK+ NV F+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K++L+GD G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
R+ ++ YYRG YD+T +F K+W + + N + LV NK D+ E
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
R V ++GE A+E G+ F+E+SAK+ NVNE+F+ +
Sbjct: 127 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K++L+GD G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
R+ ++ YYRG YD+T +F K+W + + N + LV NK D+ E
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V ++GE A+E G+ F+E+SAK+ NVNE+F+ +
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
+ +++++++G G GKTSL+ RF F + +ST+G F + + L I+ IWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
GQER++S+ YYR YDIT ++F+ KW++ + + + + + LV NK+D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 EEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIGD 169
E R++ ++GE +AQ+ G+ F E SAK NV+E+F ++ D
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++L+GD G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+T +F K+W + + N + LV NK D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
V ++GE A+E G+ F+E+SAK+ NVNE+F+ +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 93/155 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++G+ GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAGQER
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDITS +++ W+ + + + N+++ L NK DL+ R
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
+V E +AQEN L FLETSA + NV E F +
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+++GD G GK+SL+LRF F +TIG F + + +N +K IWDTAGQER
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYRG YD+TS +SF K+W+ E+ Q ++ LV NK D E++
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
V+ E+ +A + G+ ETSAK NV E+F
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLVL+GD GKT +V RF G F + Q STIG F + L + +K IWDTAGQER
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ ++ YYR YDIT SF W++++++ N++ L+ NK DL E R
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
+V E + A+ + L +ETSAK + NV E F +
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 93/155 (60%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++G+ GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAGQER
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDITS +++ W+ + + + N+++ L NK DL+ R
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
+V E +AQEN L FLETSA + +V E F +
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 167
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K +++G+ GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAG ER
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ S+ YYRG YDITS +++ W+ + + + N+++ L NK DL+ R
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
+V E +AQEN L FLETSA + +V E F +
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 164
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
TS K + +K+++LGD G GKTSL+ ++V +F + ++TIGA F T+ + +++ + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
WDTAGQER+ SL +YRG +D+T+ ++F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
++ NK+DL E R+V + + + +N + + ETSAK A NV + F I
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 90/165 (54%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
N + KL+++G+ GKTS + R+ F ST+G F + + +E +K IWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERY ++ YYRG YDIT+ +SF + W +++ N + LV NK
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170
D+EE+R V E+G+L A++ G F E SAK +V + F + D
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
TS K + +K+++LGD G GKTSL+ ++V +F + ++TIGA F T+ + +++ + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
WDTAGQER+ SL +YRG +D+T+ ++F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
++ NK+DL E R+V + + + +N + + ETSAK A NV + F I
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
TS K + +K+++LGD G GKTSL+ ++V +F + ++TIGA F T+ + +++ + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
WDTAGQER+ SL +YRG +D+T+ ++F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
++ NK+D E R+V + + + +N + + ETSAK A NV + F I
Sbjct: 122 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K++++G+ G GK+SL+LRF F +TIG F + +S++ K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEE 129
R+ +L P YYRG YD+T D+F + W+ EL+ N ++ LV NK+D +E
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EG +A+++ F+E SAK+ V F E+
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEEL 172
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
TS K + +K+++LGD G GKTSL+ ++V +F + ++TIGA F T+ + +++ + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
WDTAG ER+ SL +YRG +D+T+ ++F+ W E Q +P N
Sbjct: 62 WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
++ NK+DL E R+V + + + +N + + ETSAK A NV + F I
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KL+L+G+ GKTS + R+ F ST+G F + + ++ IK IWDTAGQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDI + +SF + W +++ N + LV NK DLE++R
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
V E+G A + G F E SAK NV ++F + D
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 86/164 (52%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
N + K++++G+ GKTS + R+ F ST+G F + + N+ IK IWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQERY ++ YYRG YDIT+ +SF + W +++ N + LV NK
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
D+E++R V +E G A G F E SAK NV + F + D
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD---- 62
KNI +K+++LGD G GKTSL+ R+V ++ ++TIGA F T+ EVT+ D
Sbjct: 6 KNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK-----EVTVDGDKVAT 59
Query: 63 --IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLI 117
+WDTAGQER+ SL +YRG YD+T+ SFE K W E N P
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 118 MFLV-ANKVDLEEKRKVKNEEG--ELYAQENGLSFLETSAKSAHNVNELFYEIG 168
F++ NK+D EE +K+ +E+ EL + TSAK+A NV+ F EI
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 84/158 (53%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G+ GKTS + R+ F ST+G F + + N+ IK IWDTAG ER
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
Y ++ YYRG YDIT+ +SF + W +++ N + LV NK D E++R
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
V +E G A G F E SAK NV + F + D
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%)
Query: 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
L+L+GD G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73 HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
++ YYRG YD+T +SF K+W+QE+ R + N+ LV NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++GD GKT L RF G+F D E+TIG F + + ++ IK +WDTAGQER
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 72 YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
+ S+ YYR YD+T+M SF W++E ++ N I LV NK DL
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN 159
+V + + +A + + ETSAK+ ++
Sbjct: 142 AIQVPTDLAQKFADTHSMPLFETSAKNPND 171
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE+Y L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
S K++ +K++LLGD G GK+SL+ R+V +F TIG F + L ++ + IW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV 121
DTAGQER+ SL +YRG + + SFE W +E +P F+V
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
NKVD +E R+V EE + + ENG +LETSAK NV F E
Sbjct: 122 LGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+ +K+V++G+ GK+S++ R+ KG F + TIG F + + +N+ ++ +WDTAG
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
QE + ++ YYRG + T +SFE W +++ + ++ LV NK+DL
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLL 122
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
+ +KNEE E A+ L F TS K NV+E+F
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++GD GKT L RF G+F D E+TIG F + + ++ IK +WDTAGQER
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72 YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
+ S+ YYR YD T+ SF W++E ++ N I LV NK DL
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN 159
+V + + +A + ETSAK+ ++
Sbjct: 151 AIQVPTDLAQKFADTHSXPLFETSAKNPND 180
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV+LG +G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 65
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
+ ++ +Y + Y IT+ +F + +++ R + ++ M LV NK DLE++
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
R V E+G+ L Q N +FLE+SAKS NVNE+FY++
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 163
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
A +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IKF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 166
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+Q KLVL+GD GTGKT+ V R + G+F +T+G V N IKF++WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
QE++ L YY +D+TS +++ W ++L R N+ + L NKVD++
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 120
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
+ RKVK + + ++N L + + SAKS +N + F
Sbjct: 121 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 154
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
+ K+ K++LLGD G GK+SL+ R+V +F TIG F + L ++ + IW
Sbjct: 4 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 63
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
DTAGQER+ SL +YRG + + SF+ W +E + P F++
Sbjct: 64 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 123
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
NK+D+ E R+V EE + + ++NG + ETSAK A NV F E
Sbjct: 124 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAG E++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 121
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 122 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 163
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
+ K+ K++LLGD G GK+SL+ R+V +F TIG F + L ++ + IW
Sbjct: 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
DTAGQER+ SL +YRG + + SF+ W +E + P F++
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
NK+D+ E R+V EE + + ++NG + ETSAK A NV F E
Sbjct: 122 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
MA +Q KLVL+GD GTGKT+ V R + G+F +T+G V N IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F++WDTAG E++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV+LG G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
+ ++ +Y + Y IT+ +F + +++ R + ++ M LV NK DLE++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
R V E+G+ L Q N +FLE+SAKS NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 161
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
++ K+ K++LLGD G GK+SL+ R+V +F TIG F + L ++ + I
Sbjct: 5 SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFL 120
WDTAGQER+ SL +YRG + + SF+ W +E + P F+
Sbjct: 65 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 121 V-ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ NK D++E R+V EE + + ++NG + ETSAK + NV F E
Sbjct: 125 ILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV+LG G GK++L ++FV+G F D + TI ++ QV ++ +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
+ ++ +Y + Y IT+ +F + +++ R + ++ M LV NK DLE++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
R V E+G+ L Q +FLE+SAKS NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 6/157 (3%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+VL GD GK+S ++R K +F + +T+G F + L ++ +WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL---- 127
+ S+A Y+R YD+T SF ++WV ++ + + + LV NK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 128 --EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
E ++ V GE A G F ETSAK N+ E
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y+R + IT M+SF + +++ R + + N+ LV NK DLE+K
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EE + A++ ++++ETSAK+ NV+++F+++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+Q KLVL+GD GTGKT+ V R + G+F +T+G V N IKF++WDTAG
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
E++ L YY +D+TS +++ W ++L R N+ + L NKVD++
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 123
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
+ RKVK + + ++N L + + SAKS +N + F
Sbjct: 124 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 157
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y+R + IT M+SF + +++ R + + N+ LV NK DLE+K
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EE + A++ ++++ETSAK+ NV+++F+++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y+R + IT M+SF + +++ R + + N+ LV NK DLE+K
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EE + A++ ++++ETSAK+ NV+++F+++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 163
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
A +Q KLVL+GD GTGKT+ V R + G+ +T+G V N IKF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
++WDTAGQE++ L YY +D+TS +++ W ++L R N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NKVD+++ RKVK + + ++N L + + SAKS +N + F
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 166
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y+R + IT M+SF + +++ R + + N+ LV NK DLE+K
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EE + A + ++++ETSAK+ NV+++F+++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV+LG G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
+ ++ +Y + Y IT+ +F + +++ R + ++ M LV NK DLE++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
R V E+G+ L Q +FLE+SAKS NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIK 60
+KL+ LGD G GKT+ + R+ +F +T+G F + + N +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
+WDTAGQER+ SL ++R +D+TS SF + W+ +LQ NP+++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
L+ NK DL ++R+V + A + G+ + ETSA + NV
Sbjct: 146 --LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLVL+GD GTGKT+ V R + G+F +TIG N IKFD+WDTAG E+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ L YY +D+TS +++ W ++L R N+ + L NKVD++E R
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
KVK + + ++N L + + SAKS +N + F
Sbjct: 132 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLVL+GD GTGKT+ V R + G+F +TIG N IKFD+WDTAG E+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ L YY +D+TS +++ W ++L R N+ + L NKVD++E R
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 124
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
KVK + + ++N L + + SAKS +N + F
Sbjct: 125 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLVL+GD GTGKT+ V R + G+F +TIG N IKFD+WDTAG E+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
+ L YY +D+TS +++ W ++L R N+ + L NKVD++E R
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
KVK + + ++N L + + SAKS +N + F
Sbjct: 124 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 155
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y+R + IT M+SF + +++ R + + N+ LV NK DLE+K
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V EE + A++ ++++ETSAK+ NV+++F+++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVT--------IK 60
+K + LGD G GKTS++ ++ G+F +T+G F + V N I
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
+WDTAG ER+ SL ++R +D+T+ SF + W+ +LQ NP+++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
L NK DLE++R VK EE A++ G+ + ETSA + N++
Sbjct: 132 --LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
+KL+ LGD G GKT+ + R+ +F +T+G F + + S +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
+WDTAG ER+ SL ++R +D+TS SF + W+ +LQ NP+++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
L+ NK DL ++R+V + A++ G+ + ETSA + NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQF---------FDFQESTIGAAFFTQVL---SLNEVT 58
+KL+ LGD G GKT+ + R+ +F DF+E + + TQ S
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV--VYDTQGADGASGKAFK 69
Query: 59 IKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPN 115
+ +WDTAG ER+ SL ++R +D+TS SF + W+ +LQ NP+
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 116 LIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
++ L+ NK DL ++R+V + A++ G+ + ETSA + NV
Sbjct: 130 IV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE + ++++R + + ++ M LV NK DL
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V ++ + A+ G+ F+ETSAK+ V++ FY +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAG 68
Q+K+V+LGD +GKTSL F + F + TIG FF + ++L + + IWD G
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKV 125
Q + Y G YDIT+ SFE + W V+++ + ++ LV NK+
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
DLE R +K E+ + QENG S SAK+ +V F ++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
+KL+ LGD G GKT+ + R+ +F +T+G F + + S +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
+WDTAG ER+ SL ++R +D+TS SF + W +LQ NP+++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
L+ NK DL ++R+V + A++ G+ + ETSA + NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
Y ++ Y+R + IT +SF ++ +++ R + + +V NK DLEE
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
+R+V EE A+E G+ ++ETSAK+ NV+++F+++
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 165
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
+KL+ LGD G GKT+ + R+ +F +T+G F + + S +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
+WDTAG ER+ SL ++R +D+TS SF + W +LQ NP+++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
L+ NK DL ++R+V + A++ G+ + ETSA + NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
Y ++ Y+R + IT +SF ++ +++ R + + +V NK DLEE
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
+R+V EE A+E G+ ++ETSAK+ NV+++F+++
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE ++ ++++R + + ++ M LV NK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V++ + + A+ G+ ++ETSAK+ V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE ++ ++++R + + ++ M LV NK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V++ + + A+ G+ ++ETSAK+ V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE + ++++R + + ++ M LV NK DL
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V ++ + A+ G+ F+ETSAK+ V++ FY +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE ++ ++++R + + ++ M LV NK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AG 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R V++ + + A+ G+ ++ETSAK+ V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
KLV++G G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y ++ Y R + I + SFE ++ ++++R + + ++ M LV NK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
R V++ + + A+ G+ ++ETSAK+ V + FY
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD+ GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
Query: 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQVLSLNEVTIKFDIWD 65
+ + K+ L+GD G GKT+ + R + G+F +T+GA L IKF++WD
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
TAGQE+ L +YY G +D+TS + + +WV+E Q + + ANK+
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159
D++ ++K+ + + + E SAK+AHN
Sbjct: 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
+ + V++EEG A + +LE SAK+ V E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
+ + V++EEG A + +LE SAK+ V E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 8 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 66
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 67 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 125
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
K+ +VKL + G G GK++LV+RF+ +F + T+ + + Q ++++ + +I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVAN 123
AGQE + R YDIT SFE K + E+++ N LI LV N
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI--LVGN 140
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIGDCTE 172
K DL+ R+V EEGE A E +F E SA + N+ E+FYE+ C E
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL--CRE 188
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 5 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 66 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K QF + T+ + + ++ ++ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--FFTQVLSLNEVTIKFDIWDTAGQ 69
++ + G G GK+SLVLRFVKG F+ES I + QV+S ++ I DT G
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKG---TFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDL 127
++ ++ + Y ITS S E K +++ + +G+ ++ + LV NK D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R+V++ E E A+ +F+ETSAK HNV ELF E+
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ F K +F + T+ + + ++ ++ +WDTAG
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + + S DS E +KWV E+ + PN+ + LVANK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDL 141
Query: 128 EEKRKVKNEEGELYAQE-------------NGLSFLETSAKSAHNVNELF 164
V+ E + + +LE SAK+ V E+F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
+ + V++EEG A + +LE SAK+ V E+F
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
M++ +I+ KLV++GD GKT L++ KGQF + T+ + V ++ ++
Sbjct: 1 MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVE 59
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQR--QGNPNLI 117
+WDTAGQE Y L P+ Y + I DS E + KW+ E+ QG P
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MFLVANKVDL------------EEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELF 164
+ LV KVDL E ++ V ++EG+ A + G + + E SAK+ + V E+F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V +GD GKT +++ + +F T+ F V +++ + +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ YRG + + S S+E KKW+ EL+R PN+ + LV K+DL +
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 130 KRK--------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
+ + + +G EL Q +++E S+K+ NV +F
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD+ GKT L++ F K QF T+ + + ++ ++ +WDTAG
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
QE Y P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 63 QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
++ VK EG A G ++E SAK+ V E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V +GD GKT L++ + F T+ F V+ +N T+ +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
Y+ L P+ YRG + + S S+E +KKW+ EL+ P + + LV K+DL +
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126
Query: 130 KRK----------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
++ + +G EL +++E S+KS NV +F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+ +LG GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
Y Y Y +TS+ SFE K +L G + + LV NK DL +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R + EEG+ A+ +FLE+SAK ++F I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+ +LG GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
Y Y Y +TS+ SFE K +L G + + LV NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R + EEG+ A+ +FLE+SAK ++F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+ +LG GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
Y Y Y +TS+ SFE K +L G + + LV NK DL +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R + EEG+ A+ +FLE+SAK ++F I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+ +LG GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
Y Y Y +TS+ SFE K +L G + + LV NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
R + EEG+ A+ +FLE+SAK ++F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V +GD GKT +++ + F T+ F V+ ++ T+ +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL-E 128
Y+ L P+ YRG + + S S+E KKW+ EL+ P + + LV K+DL +
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRD 124
Query: 129 EKRKVKNEEG----------ELYAQENGLSFLETSAKSAHNVNELF 164
+K+ +K+ G EL + +LE S+K+ NV +F
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
K+V+LG GKTSL +FV+G+F + + T+ + +++++L + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
Y L + G Y +TS+ SF+ + Q+L G + + LV NK DL +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVKNEEGELYAQENGLSFLETSAK 155
R+V+ EG+ A+ G +F+E+SA+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSAR 169
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V +GD GKT +++ + F T+ F V+ ++ T+ +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
Y+ L P+ YRG + + S S+E AKKW+ EL R P + + LV K+DL +
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
Query: 130 KRK-----------VKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
++ N+ EL ++E S+K+ NV +F
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
I+ KLV++GD GKT L++ K QF + T+ + + ++ ++ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
E Y L P+ Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
E R+ VK EEG A G ++E SAK+ V E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
VK+VL+GD G GKTSL++ F G F + T+ + L + + IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQ 92
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128
+ Y L P++Y +D+TS +SF+ +W E+ + + +V K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLR 151
Query: 129 EKRKVKNE------------EGELYAQENG-LSFLETSAKSAHNVNELFYEIGD 169
+ + + N+ G+ A+ G +++LE SA+ NV+ +F E +
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F++ F + TI ++ Q + +++ + DI DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ +T SFE K+ +++ R + M L+ NK DL+ +R+V EEG+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A++ ++++E SAK NV++ F+E+
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHEL 162
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
VK VL+GD GKTSLV+ + + I AF F+ V+S++ ++ + DTAG
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTN---GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
Q+ + L P+ Y + + S SF+ ++KWV E+ R P + LV + DL
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDL 136
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
E ++ V E +L A+E S++E SA + N+ E+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E+ + DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ F+ETSAK+ V++ FY
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFY 158
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ F+ETSAK+ V++ FY
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFY 158
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTL 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGHEEYSAMRDQYMRT 92
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ F+ETSAK+ V++ FY +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTL 177
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K +L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV N+ DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + +I ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTL 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + +I ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F + F D + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
A + + ++ETSAK NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F + + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F++ F + TI ++ T++ S++ + + DI DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83 XXXXXXXYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I SF E K + Q L+ + + + LV NK DLE +R+V E +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
+ +++ E SAK NV+E F ++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQL 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ ++ETSAK+ V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K+SLVLRFVKG F D TI + QV+S ++ I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83 XXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDLEEKRKVKNEEGEL 140
+ +TS S E + + Q +G+ ++ + LV NK D E +R+V E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 141 YAQENGLSFLETSAKSAHNVNELFYEI 167
AQE +F+ETSAK +NV ELF E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
A+ G+ ++ETSAK+ V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFD 62
SN+N++ K+V++GD GKT+L+ F K F E+ + F +T ++ I+
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELS 58
Query: 63 IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLV 121
+WDT+G Y ++ P+ Y +DI+ ++ + KKW E+Q + PN M LV
Sbjct: 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 117
Query: 122 ANKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
K DL + V ++G A++ G +++E SA +S ++V ++F+
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F + F D + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
A + + ++ETSAK NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F D + TI ++ QV+ E + DI DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 92
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
+ I + SF + ++++R + + ++ M LV NK DL R V ++
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+ G+ F+ETSAK+ V + FY +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTL 177
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F + F + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
A + + ++ETSAK NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F + F + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
A + + ++ETSAK NV++ F+++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDL 171
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 21/178 (11%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFD 62
N+N++ K+V++GD GKT+L+ F K F E+ + F +T ++ I+
Sbjct: 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELS 79
Query: 63 IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLV 121
+WDT+G Y ++ P+ Y +DI+ ++ + KKW E+Q + PN M LV
Sbjct: 80 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 138
Query: 122 ANKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
K DL + V ++G A++ G +++E SA +S ++V ++F+
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
N+N++ K+V++GD GKT+L+ F K F E+ + F +T ++ I+ +
Sbjct: 19 NQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
WDT+G Y ++ P+ Y +DI+ ++ + KKW E+Q + PN M LV
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 134
Query: 123 NKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
K DL + V ++G A++ G +++E SA +S ++V ++F+
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 191
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 23 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++FV G F + + TI F+ + + ++ +I DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
Y + + SF+ K ++ R + + + LV NKVDLE +R+V + EG
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
A+E G F+ETSAKS V+ELF EI
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEI 160
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAG 68
++VLLGD G GKTSL F Q D E +G + + L+++ + D W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDL 127
++ S +G Y I SFE A + +L+R + + + LV NK DL
Sbjct: 65 LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
R+V EEG A F+ETSA HNV ELF
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTI 59
+ N +K+V++GD GKT L+L F KG+ + + F F+ V+
Sbjct: 14 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEF 70
Query: 60 KFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIM 118
+WDTAGQE Y L P+ Y + + + SF+ + KW E++ + +
Sbjct: 71 ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV 130
Query: 119 FLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIGDC 170
LV KVDL + V +EG+ Q+ G ++++E S+ + +NE+F + DC
Sbjct: 131 -LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 184
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTI 59
+ N +K+V++GD GKT L+L F KG+ + + F F+ V+
Sbjct: 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEF 71
Query: 60 KFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIM 118
+WDTAGQE Y L P+ Y + + + SF+ + KW E++ + +
Sbjct: 72 ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV 131
Query: 119 FLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIGDC 170
LV KVDL + V +EG+ Q+ G ++++E S+ + +NE+F + DC
Sbjct: 132 -LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFV-KG-QFFDFQESTIGAAFFTQVLSLNEVTIKFDIW- 64
++ K+ ++G+ GK++L+ F KG +F T G +++ + T+ +++
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65 -DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN----LIMF 119
DTAG + Y Y+ G +D++SM+SFE K W EL + P+ L
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LVANKVDLEEKR-KVKNEEGELYAQENGLSFLETSA 154
LVANK DL +R +V+ + + +A N L F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 131
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD+ GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S S+E + KW E+ R P+ + LV K+DL +
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
+ + +G A+E + + +LE SA + + +F E
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R P+ + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD+ GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S S+E + KW E+ R P+ + LV K+DL +
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
+ + +G A+E + + +LE SA + + +F E
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R P+ + LV K+DL +
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R P+ + LV K+DL +
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GK L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + T+ + V+ ++ + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S S+E + KW E+ R P+ + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
+ + +G A+E + + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 171
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE + KW E+ R PN + LV K+DL +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD+ GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SF + KW E+ R PN + LV K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SF + KW E+ R PN + LV K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SF + KW E+ R PN + LV K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ + +G A+E G + +LE SA + + +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 63
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 72
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 66
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
+ KLVL+GD+ GKT+++ K + E+ + F +T L E ++ +WDT+
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
G Y ++ P+ Y +DI+ ++ + A KKW E+ P+ + L+ K D
Sbjct: 67 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
L +++ + E+G A++ G +LE TS KS H++
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
+ KLVL+GD+ GKT+++ K + E+ + F +T L E ++ +WDT+
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
G Y ++ P+ Y +DI+ ++ + A KKW E+ P+ + L+ K D
Sbjct: 68 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
L +++ + E+G A++ G +LE TS KS H++
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
N ++VL+G+ G GK++L F D +G + + L ++ I D+
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 63
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
W+ G+ + L + Y IT SFE+A + +L+R + ++ + LV
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NK DL R+V EG A F+ETSA HNV ELF
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
N ++VL+G+ G GK++L F D +G + + L ++ I D+
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
W+ G+ + L + Y IT SFE+A + +L+R + ++ + LV
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
NK DL R+V EG A F+ETSA HNV ELF
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+ +K V++GD GKT L++ + F + T+ + V ++ ++DTAG
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAG 75
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + + + SF+ K +WV EL+ PN+ L+ ++DL
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDL 134
Query: 128 EEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
+ K + E+G+ A+E G ++E SA + + +F E
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
+ KLVL+GD+ GKT+++ K + E+ + F +T L E ++ +WDT+
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
G Y ++ P+ Y +DI+ ++ + A KKW E+ P+ + L+ K D
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 142
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
L +++ + E+G A++ G +LE TS KS H++
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 12 KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
++VL+G+ G GK++L F D +G + + L ++ I D+W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
G+ + L + Y IT SFE+A + +L+R + ++ + LV NK D
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
L R+V EG A F+ETSA HNV ELF
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + F T+ + V+ ++ + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMD-------------------SFERAK-KWVQELQR 110
Y L P+ Y DITS SFE + KW E+ R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 111 QGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKSA 157
PN + LV K+DL + + + +G A+E G + +LE SA +
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 158 HNVNELFYE 166
+ +F E
Sbjct: 184 RGLKTVFDE 192
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 12 KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
++VL+G+ G GK++L F D +G + + L ++ I D+W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
G+ + L + Y IT SFE+A + +L+R + ++ + LV NK D
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
L R+V EG A F+ETSA HNV ELF
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLRDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
+K V++GD GKT L++ + +F + A F + + + ++DTAG
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
QE Y L P+ Y + + S SFE K KWV E+ P LV ++DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDL 119
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
+ ++ + E E A++ + ++E SA + + +F E
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + + T+ + V+ E ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GK L++ + +F T+ + V+ E ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 66
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+K V++GD GKT L++ + +F T+ + V+ E ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 62
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
Y L P+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
++ + E E A++ + ++E SA + + +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
K++LLG G GK++L F G D E+ + + + ++ E ++ +DIW+ G
Sbjct: 4 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 69 QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
H +A Y +T SFE+A + +L+R + ++ + LV NK
Sbjct: 62 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
DL R+V +EG A F+ETSA HNV LF
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
K++LLG G GK++L F G D E+ + + + ++ E ++ +DIW+ G
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69 QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
H +A Y +T SFE+A + +L+R + ++ + LV NK
Sbjct: 67 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
DL R+V +EG A F+ETSA HNV LF
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
K++LLG G GK++L F G D E+ + + + ++ E ++ +DIW+ G
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69 QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
H +A Y +T SFE+A + +L+R + ++ + LV NK
Sbjct: 67 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
DL R+V +EG A F+ETSA HNV LF
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
K++L+G+ G GK++L F Q E + + + ++ EVT + +DIW D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
G R H L + +T SF + + + L R G P +L + LV N
Sbjct: 85 AGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 138
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
K DL R+V EEG A +ETSA HN ELF
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
K++LLG+ G GK++L F Q + E + + + ++ EVT I +DIW D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
G + H L + +T SF + + + L R G P +L + LV N
Sbjct: 74 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 127
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
K DL R+V EEG A +ETSA HN ELF
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLVLRF--VKGQFFDFQESTIGAAFFTQVLSLNEVT-IKFDIW---D 65
K++L+G+ G GK++L F ++G E++ ++ EVT I +DIW D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
G + H L + +T SF + + + L R G P +L + LV N
Sbjct: 64 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 117
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
K DL R+V EEG A +ETSA HN ELF
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N ++++++LG GKT+++ + GQ +TI F V ++ +KF++WD
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 374
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
GQ++ L YY G D D + A+ QEL R N + I+ + AN
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 431
Query: 124 KVDLEEKRK 132
K DL + K
Sbjct: 432 KQDLPDAMK 440
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++L L+G +GKT+ V GQF + T+G F + ++ VTIK +WD GQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 77
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
R+ S+ Y RG D + E +K + L Q QG P L++ NK
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
DL
Sbjct: 135 DL 136
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++L L+G +GKT+ V GQF + T+G F + ++ VTIK IWD GQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQ 77
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
R+ S+ Y RG D + E ++ + L Q QG P L++ NK
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 D----LEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVN 161
D L+EK+ + E+ L A Q+ + S K N++
Sbjct: 135 DLPNALDEKQLI--EKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N ++++++LG GKT+++ + GQ +TI F V ++ +KF++WD
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 64
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
GQ++ L YY G D D + A+ QEL R N + I+ + AN
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 121
Query: 124 KVDLEEKRK 132
K DL + K
Sbjct: 122 KQDLPDAMK 130
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++L L+G +GKT+ V GQF + T+G F + ++ VTIK +WD GQ
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 86
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
R+ S+ Y RG D + E +K + L Q QG P L++ NK
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 126 DL 127
DL
Sbjct: 144 DL 145
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N ++++++LG GKT+++ + GQ +TI F V ++ +KF++WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
GQ++ L YY G D D + A+ QEL R N + I+ + AN
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
K DL + K
Sbjct: 123 KQDLPDAMK 131
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+++++LG GKT+++ + GQ +TI F V ++ +KF++WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
+ L YY G D D + A+ QEL R N + I+ + ANK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
L + K
Sbjct: 113 LPDAMK 118
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
+++++LG GKT+++ + GQ +TI F V ++ +KF++WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
+ L YY G D D + A+ QEL R N + I+ + ANK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
L + K
Sbjct: 113 LPDAMK 118
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
+++ LG GKT+++ + GQ +TI F V ++ +KF++WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
L YY G D D + A+ QEL R N + I+ + ANK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 EEKRK 132
+ K
Sbjct: 114 PDAXK 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N ++++++LG GKT+++ + GQ +TI F V ++ +KF++WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
G ++ L YY G D D + A+ QEL R N + I+ + AN
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
K DL + K
Sbjct: 123 KQDLPDAMK 131
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+++++++LG GKT+++ + GQ +TI F V ++ +KF++WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGG 56
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
++ L YY G D D + A+ QEL R N + I+ + ANK
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 VDLEEKRK 132
DL + K
Sbjct: 114 QDLPDAMK 121
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
+++++++LG GKT+++ + GQ +TI F V ++ +KF++WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGG 55
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
++ L YY G D D + A+ QEL R N + I+ + ANK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 VDLEEKRK 132
DL + K
Sbjct: 113 QDLPDAMK 120
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N +++++++G G GKT+++ + G+ +TI F V ++ I F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
GQ+R SL YYR D A++ +Q + + N + + ANK D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 127 LEE 129
L E
Sbjct: 130 LPE 132
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIW 64
+ KL ++G+ G+GKT+L+ + K + D Q +T+G + Q+ + + ++W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVAN 123
D AG+E ++S P + YD++ + + K W+ ++ + + + ++ LV
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGT 120
Query: 124 KVDLEEKRKVK 134
+D+ ++++ K
Sbjct: 121 HLDVSDEKQRK 131
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDT 66
KL ++G+ G+GKT+L+ + K + D Q +T+G + Q+ + + ++WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKV 125
AG+E ++S P + YD++ + + K W+ ++ + + + ++ LV +
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLEEKRKVK 134
D+ ++++ K
Sbjct: 121 DVSDEKQRK 129
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N +++++++G G GKT+++ + G+ +TI F V ++ I F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVD 126
GQ+R SL YYR D A++ +Q + + +LV ANK D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 127 LEE 129
L E
Sbjct: 130 LPE 132
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N +++++++G G GKT+++ + G+ +TI F V + I F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVECVQYCNISFTVWDVG 69
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
GQ+R SL YY D A++ +Q + + N + ANK D
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 127 LEEKRKVK--NEEGELYAQENGLSFLE-TSAKSAHNVNELFYEIGDC 170
L E E+ L++ N F++ T A S + E + +C
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNC 176
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
++++++G G GKT+++ + G+ +TI F V ++ I F +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQD 55
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLEE 129
R SL YYR D A++ +Q + + +LV ANK DL E
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++++++G GKTS++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
++ L YY+ D D A+ +EL + N N I+ + ANK
Sbjct: 72 DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKH 128
Query: 126 DLEEKRKV 133
DL + +
Sbjct: 129 DLPQAMSI 136
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA- 67
++V L +LG G GK++L ++F+ +F + + + ++ +++ + + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 68 -----GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA 122
ERY + A + +S E +E QR ++ L+
Sbjct: 79 LDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR----SIPALLLG 134
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYE 166
NK+D+ + R+V EG A G F E SA +V +F+E
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
N ++++++LG G GKT+++ R G+ + TIG F + LS +K ++WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYK--NLKLNVWDLG 70
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANKVD 126
GQ YY D T D A K + LQ + + + + ANK D
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++++++LG G GKT+++ R G+ +TI F V ++ +KF +WD GQ
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVWDLGGQ 56
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
YY D D +K + V L+ + I+ + ANK D+E
Sbjct: 57 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 116
Query: 129 E---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
+ ++ N G ++ +TSA ++E
Sbjct: 117 QAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDE 153
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
+ + K +++L++LG GKT+++ +F G+ D T+G + +L K
Sbjct: 7 LKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGF----NIKTLEHRGFK 61
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLI 117
+IWD GQ+ S Y+ D + ++ +Q L +R L+
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 118 MFLVANKVDL 127
+F ANK DL
Sbjct: 122 IF--ANKQDL 129
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
V+++++G GKT+++ + G+ +TI F V ++ I F +WD GQ+
Sbjct: 18 VRILMVGLDAAGKTTILYKVKLGEVV----TTIPTIGF-NVETVEFRNISFTVWDVGGQD 72
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVD 126
+ L YY D + + A+ +EL R N + I+ + ANK D
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQD 129
Query: 127 L 127
L
Sbjct: 130 L 130
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
+ + K +++L++LG GKT+++ +F G+ D T+G + +L K
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFK 63
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLI 117
+IWD GQ+ S Y+ D + ++ +Q L +R L+
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 123
Query: 118 MFLVANKVDL 127
+F ANK DL
Sbjct: 124 IF--ANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
+ + K +++L++LG GKT+++ +F G+ D T+G + +L K
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFK 63
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLI 117
+IWD GQ+ S Y+ D + ++ +Q L +R L+
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 123
Query: 118 MFLVANKVDL 127
+F ANK DL
Sbjct: 124 IF--ANKQDL 131
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++++++LG G GKT+++ R G+ +TI F V ++ +KF +WD G
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVWDLGGL 58
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
YY D D +K + V L+ + I+ + ANK D+E
Sbjct: 59 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 118
Query: 129 E---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
+ ++ N G ++ +TSA ++E
Sbjct: 119 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 155
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFT-QVLSL----NEVTIK--- 60
++K+ L+GD GKTSL+ + + G+ FD +ES T G T Q ++ N+ +K
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLI-GETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
F WD GQE H+ + D + DS + W++ +++ G + ++ +
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKSPVI-V 155
Query: 121 VANKVD 126
V NK+D
Sbjct: 156 VMNKID 161
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 74
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
++ L Y++ D D A+ EL R N + ++ + ANK
Sbjct: 75 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 131
Query: 126 DL 127
DL
Sbjct: 132 DL 133
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
Q++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNICFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQ----GNPNLIMFLVANKV 125
+R L Y++ D + ER ++ ELQ+ + ++ L ANK
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVD---SNDRERIQEVADELQKMLLVDELRDAVLLLFANKQ 128
Query: 126 DL 127
DL
Sbjct: 129 DL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
Q++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQ 83
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLE 128
++ L Y++ D + + + +Q+ LQ + ++ + ANK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 129 EKRKV 133
V
Sbjct: 144 NAMPV 148
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQ 219
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
++ L Y++ D + A+ +EL R + ++ + ANK
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQ 276
Query: 126 DL 127
DL
Sbjct: 277 DL 278
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 70
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDL 127
++ L Y++ D + A++ + + + + ++ + ANK DL
Sbjct: 71 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDL 127
++ L Y++ D + A++ + + + + ++ + ANK DL
Sbjct: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK---FDIW 64
N + K++++G GKT+++ +F+ + TIG+ ++ E+ +K F +W
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGS-------NVEEIVVKNTHFLMW 65
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK 102
D GQE S YY + I +DS +R +
Sbjct: 66 DIGGQESLRSSWNTYYSN-----TEFIILVVDSIDRER 98
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
++++++G GKT+++ + G+ +TI F V ++ I F +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQD 55
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
+ L Y++ D + A+ +EL R + ++ + ANK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQD 112
Query: 127 L 127
L
Sbjct: 113 L 113
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAG 68
K++++G GKT+++ +F + TIG+ ++ E+ I +F +WD G
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-------NVEEIVINNTRFLMWDIGG 74
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLI 117
QE S YY + I +DS +R + V ++L++ G
Sbjct: 75 QESLRSSWNTYY-----TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG----- 124
Query: 118 MFLVANKVDLEE 129
+ + ANK D++E
Sbjct: 125 LLIFANKQDVKE 136
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAG 68
K++++G GKT+++ +F + TIG+ ++ E+ I +F +WD G
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-------NVEEIVINNTRFLMWDIGG 75
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLI 117
QE S YY + I +DS +R + V ++L++ G
Sbjct: 76 QESLRSSWNTYY-----TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG----- 125
Query: 118 MFLVANKVDLEE 129
+ + ANK D++E
Sbjct: 126 LLIFANKQDVKE 137
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAG 68
K++++G GKT+++ +F + TIG+ ++ E+ I +F +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGS-------NVEEIVINNTRFLMWDIGG 69
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLI 117
QE S YY + I +DS +R + V ++L++ G
Sbjct: 70 QESLRSSWNTYYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG----- 119
Query: 118 MFLVANKVDLEE 129
+ + ANK D++E
Sbjct: 120 LLIFANKQDVKE 131
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAG 68
K++++G GKT+++ +F + TIG+ ++ E+ I +F +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGS-------NVEEIVINNTRFLMWDIGG 69
Query: 69 QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLI 117
QE S YY + I +DS +R + V ++L++ G
Sbjct: 70 QESLRSSWNTYYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG----- 119
Query: 118 MFLVANKVDLEE 129
+ + ANK D++E
Sbjct: 120 LLIFANKQDVKE 131
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++L +LGD +GK+SL+ RF+ G + E T + ++L + + I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVL-IREEAG- 63
Query: 70 ERYHSLAP-----MYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA-- 122
AP + D S + R + L+ +G L + LV
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 123 NKVDLEEKRKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
+++ R V + L A S+ ET A NV+ +F E+
Sbjct: 118 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 163
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 22 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 81
GKT+++ +F G+ D T+G + +L K +IWD GQ+ S Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 82 GXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLIMFLVANKVDL 127
D + ++ +Q L +R L++F ANK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIF--ANKQDL 131
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 9/162 (5%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
S+ + ++++LG G GKT+++ R G+ +TI F V ++ +KF +W
Sbjct: 2 SHXTREXRILILGLDGAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVW 56
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVAN 123
D G YY D D +K + + I+ + AN
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFAN 116
Query: 124 KVDLEE---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
K D E+ + N G ++ +TSA ++E
Sbjct: 117 KQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDE 158
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+++L +LGD +GK+SL+ RF+ G + E T + ++L + + I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVL-IREEAG- 63
Query: 70 ERYHSLAP-----MYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA-- 122
AP + D S + R + L+ +G L + LV
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 123 NKVDLEEKRKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
+++ R V + L A S+ ET A NV+ +F E+
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQ- 69
KL+L+G G+GK+S+ + + F +GA + L + + ++WD GQ
Sbjct: 8 KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 66
Query: 70 ---ERYHSLAPMY-YRGXXXXXXXYDITSMDSFERAKKWVQELQ--RQGNPNLIMFLVAN 123
E Y + + ++ +D+ S + + + + + L+ R+ +P+ +F++ +
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 126
Query: 124 KVDL 127
K+DL
Sbjct: 127 KMDL 130
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+V ++ LG +GKT+++ + + Q I + ++ F ++D +GQ
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPS---NAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV--QELQRQGN-PNL------IMFL 120
RY +L YY+ I +DS +R + V +EL N P++ I+F
Sbjct: 78 GRYRNLWEHYYKEGQAI-----IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132
Query: 121 VANKVDLEE 129
ANK+DL +
Sbjct: 133 -ANKMDLRD 140
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+V+++LLG GKT+L+ + D T F + S+ K ++WD GQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASE---DISHITPTQGF--NIKSVQSQGFKLNVWDIGGQ 70
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDL 127
+ Y+ D FE + + EL + + + L+ ANK DL
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
S + +V+++LLG GKT+L+ + D T F + S+ K ++W
Sbjct: 12 SAPDQEVRILLLGLDNAGKTTLLKQLASE---DISHITPTQGF--NIKSVQSQGFKLNVW 66
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-AN 123
D GQ + Y+ D FE + + EL + + + L+ AN
Sbjct: 67 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 126
Query: 124 KVDL 127
K DL
Sbjct: 127 KQDL 130
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
+V+++LLG GKT+L+ + D T F + S+ K ++WD GQ
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASE---DISHITPTQGF--NIKSVQSQGFKLNVWDIGGQ 58
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDL 127
+ Y+ D FE + + EL + + + L+ ANK DL
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
++++++LG GKTS++ R G + + +L I F++WD GQ
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTV-----GVNLETLQYKNISFEVWDLGGQ 76
Query: 70 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLE 128
Y+ D T D AK + L + + L+ ANK DL
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136
Query: 129 E 129
+
Sbjct: 137 D 137
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
++++++G GKT+++ + G+ +TI F V ++ I F +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGLD 57
Query: 71 RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDL 127
+ L Y++ D + A++ + + + + ++ + ANK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 102 KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 152
KK ++L R+GNPNL + D+ E R +K +G + + ++ ET
Sbjct: 91 KKHYRDLLREGNPNLSFIYLKGDFDVIESR-LKARKGHFFKTQXLVTQFET 140
>pdb|1WRY|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein
Length = 121
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 115 NLIMFLVANKVDLEEKRKVKNEEGELYAQEN 145
+++ FL ANK+ EEK NEE + +EN
Sbjct: 29 DVLGFLEANKIGFEEKDIAANEENRKWMREN 59
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 102 KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 152
KK ++L R+GNPNL + D+ E R +K +G + + ++ ET
Sbjct: 91 KKHYRDLLREGNPNLSFIYLKGDFDVIESR-LKARKGHFFKTQMLVTQFET 140
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr)
In Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV 51
MAR S+ Q ++ +G +GKT L +R + GQ+ D Q S ++ +V
Sbjct: 1 MARKSS---QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKV 48
>pdb|1U6T|A Chain A, Crystal Structure Of The Human Sh3 Binding Glutamic-Rich
Protein Like
Length = 121
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 115 NLIMFLVANKVDLEEKRKVKNEEGELYAQEN 145
+++ FL ANK+ EEK NEE + +EN
Sbjct: 21 DVLGFLEANKIGFEEKDIAANEENRKWMREN 51
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133
Y+IT R+K ++ +L +QG +I+ +ANK D+ E ++
Sbjct: 482 YNIT------RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRI 519
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161
K + E R G + + L+AN D+ K K L A+E L +E K+ +VN
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,639,010
Number of Sequences: 62578
Number of extensions: 163605
Number of successful extensions: 1171
Number of sequences better than 100.0: 353
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 354
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)