Query 030364
Match_columns 178
No_of_seqs 162 out of 1780
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.3E-43 2.8E-48 231.4 18.8 170 5-174 4-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-41 2.3E-46 221.6 19.2 169 8-176 3-171 (200)
3 KOG0078 GTP-binding protein SE 100.0 5.4E-41 1.2E-45 222.0 19.8 168 6-173 8-175 (207)
4 cd04121 Rab40 Rab40 subfamily. 100.0 9.7E-40 2.1E-44 221.4 22.6 167 7-174 3-169 (189)
5 cd04120 Rab12 Rab12 subfamily. 100.0 1.5E-39 3.3E-44 222.4 21.9 162 11-172 1-163 (202)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-39 3.5E-44 211.7 19.7 171 4-174 16-187 (221)
7 KOG0098 GTPase Rab2, small G p 100.0 6.4E-40 1.4E-44 212.0 17.6 165 7-171 3-167 (216)
8 KOG0080 GTPase Rab18, small G 100.0 2E-39 4.4E-44 204.9 17.1 169 5-173 6-175 (209)
9 cd04122 Rab14 Rab14 subfamily. 100.0 5.6E-38 1.2E-42 209.7 22.2 163 10-172 2-164 (166)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.7E-38 1E-42 212.2 21.2 162 7-170 2-178 (182)
11 KOG0394 Ras-related GTPase [Ge 100.0 8.4E-39 1.8E-43 206.4 16.3 168 6-173 5-179 (210)
12 cd04133 Rop_like Rop subfamily 100.0 6.2E-38 1.4E-42 210.4 20.7 161 11-173 2-174 (176)
13 cd04117 Rab15 Rab15 subfamily. 100.0 1.9E-37 4.1E-42 206.2 22.2 160 11-170 1-160 (161)
14 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.8E-38 1E-42 207.3 17.9 167 5-171 9-175 (222)
15 cd01867 Rab8_Rab10_Rab13_like 100.0 2.9E-37 6.2E-42 206.5 22.0 164 9-172 2-165 (167)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.1E-37 4.6E-42 207.8 20.9 163 10-173 2-165 (172)
17 cd01865 Rab3 Rab3 subfamily. 100.0 4.8E-37 1E-41 205.1 22.1 162 11-172 2-163 (165)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.8E-37 1E-41 213.3 22.0 163 9-173 12-189 (232)
19 cd04131 Rnd Rnd subfamily. Th 100.0 4.5E-37 9.8E-42 207.0 21.0 159 10-170 1-174 (178)
20 KOG0093 GTPase Rab3, small G p 100.0 4.5E-38 9.7E-43 196.0 14.7 166 8-173 19-184 (193)
21 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 7.3E-37 1.6E-41 204.3 21.7 163 10-172 2-164 (166)
22 PF00071 Ras: Ras family; Int 100.0 7.2E-37 1.6E-41 203.6 21.3 161 12-172 1-161 (162)
23 cd01875 RhoG RhoG subfamily. 100.0 7.6E-37 1.7E-41 208.4 21.6 163 10-174 3-179 (191)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.1E-36 2.3E-41 209.3 21.9 163 11-173 1-169 (201)
25 cd04113 Rab4 Rab4 subfamily. 100.0 2.1E-36 4.5E-41 201.2 22.0 161 11-171 1-161 (161)
26 cd04127 Rab27A Rab27a subfamil 100.0 1.7E-36 3.6E-41 205.1 21.7 165 8-172 2-177 (180)
27 KOG0079 GTP-binding protein H- 100.0 4.3E-38 9.4E-43 196.3 12.7 165 9-174 7-171 (198)
28 cd01868 Rab11_like Rab11-like. 100.0 2.7E-36 5.9E-41 201.4 22.4 163 9-171 2-164 (165)
29 cd04119 RJL RJL (RabJ-Like) su 100.0 2.4E-36 5.2E-41 201.9 21.7 162 11-172 1-167 (168)
30 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.7E-36 3.7E-41 205.0 21.1 164 11-175 1-169 (182)
31 cd04110 Rab35 Rab35 subfamily. 100.0 2.9E-36 6.3E-41 206.8 22.2 167 8-175 4-170 (199)
32 cd01864 Rab19 Rab19 subfamily. 100.0 4.2E-36 9.1E-41 200.5 22.3 163 9-171 2-165 (165)
33 cd04136 Rap_like Rap-like subf 100.0 2.6E-36 5.7E-41 201.0 20.2 161 10-171 1-162 (163)
34 cd04109 Rab28 Rab28 subfamily. 100.0 4.8E-36 1E-40 208.0 22.2 164 11-174 1-168 (215)
35 cd04125 RabA_like RabA-like su 100.0 6.9E-36 1.5E-40 203.4 22.3 163 11-173 1-163 (188)
36 cd04175 Rap1 Rap1 subgroup. T 100.0 3.9E-36 8.4E-41 200.5 20.4 162 10-172 1-163 (164)
37 PLN03110 Rab GTPase; Provision 100.0 7.9E-36 1.7E-40 206.8 22.6 167 7-173 9-175 (216)
38 cd01866 Rab2 Rab2 subfamily. 100.0 1.1E-35 2.3E-40 199.1 22.3 163 9-171 3-165 (168)
39 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.5E-36 1.2E-40 201.5 20.8 158 11-170 2-173 (175)
40 PTZ00369 Ras-like protein; Pro 100.0 7.2E-36 1.6E-40 203.4 21.0 165 8-173 3-168 (189)
41 cd04106 Rab23_lke Rab23-like s 100.0 1.3E-35 2.9E-40 197.4 21.6 159 11-170 1-161 (162)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.7E-35 3.6E-40 198.3 21.8 163 12-174 2-167 (170)
43 KOG0086 GTPase Rab4, small G p 100.0 1.5E-36 3.3E-41 190.6 15.5 165 7-171 6-170 (214)
44 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-35 2.8E-40 202.5 21.4 164 11-174 1-165 (191)
45 PLN03071 GTP-binding nuclear p 100.0 1.3E-35 2.8E-40 206.0 21.6 163 8-173 11-173 (219)
46 cd00877 Ran Ran (Ras-related n 100.0 1.8E-35 3.8E-40 197.6 21.4 160 11-173 1-160 (166)
47 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-35 4E-40 204.2 21.8 163 10-172 2-166 (211)
48 cd04144 Ras2 Ras2 subfamily. 100.0 7.6E-36 1.6E-40 203.4 19.5 162 12-174 1-165 (190)
49 cd04116 Rab9 Rab9 subfamily. 100.0 3.8E-35 8.3E-40 196.7 22.5 164 7-171 2-170 (170)
50 cd04176 Rap2 Rap2 subgroup. T 100.0 1.5E-35 3.4E-40 197.4 20.4 161 10-171 1-162 (163)
51 smart00175 RAB Rab subfamily o 100.0 3.5E-35 7.6E-40 195.7 22.0 162 11-172 1-162 (164)
52 PLN03108 Rab family protein; P 100.0 4.4E-35 9.5E-40 202.4 22.6 165 8-172 4-168 (210)
53 cd01861 Rab6 Rab6 subfamily. 100.0 4.6E-35 9.9E-40 194.7 21.9 161 11-171 1-161 (161)
54 cd01860 Rab5_related Rab5-rela 100.0 6.6E-35 1.4E-39 194.3 22.2 162 10-171 1-162 (163)
55 cd01871 Rac1_like Rac1-like su 100.0 3.4E-35 7.4E-40 197.4 20.9 159 10-170 1-173 (174)
56 cd04140 ARHI_like ARHI subfami 100.0 3.2E-35 7E-40 196.2 20.4 159 11-170 2-163 (165)
57 cd04124 RabL2 RabL2 subfamily. 100.0 6.1E-35 1.3E-39 194.1 21.6 161 11-175 1-161 (161)
58 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.2E-35 1.1E-39 194.9 21.0 162 9-171 1-163 (164)
59 smart00173 RAS Ras subfamily o 100.0 3.4E-35 7.3E-40 195.9 20.0 161 11-172 1-162 (164)
60 cd04126 Rab20 Rab20 subfamily. 100.0 3.6E-35 7.7E-40 202.9 20.5 158 11-173 1-191 (220)
61 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.3E-35 2E-39 194.9 21.6 163 10-172 2-169 (170)
62 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.4E-35 1.2E-39 202.1 21.0 160 10-171 1-175 (222)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.5E-35 1.4E-39 193.9 20.7 160 10-171 1-161 (162)
64 cd04134 Rho3 Rho3 subfamily. 100.0 5.9E-35 1.3E-39 198.9 20.8 163 11-175 1-177 (189)
65 KOG0091 GTPase Rab39, small G 100.0 3.8E-36 8.2E-41 190.6 13.6 165 8-172 6-173 (213)
66 KOG0095 GTPase Rab30, small G 100.0 5.9E-36 1.3E-40 187.3 14.1 166 6-171 3-168 (213)
67 KOG0088 GTPase Rab21, small G 100.0 2.7E-36 5.8E-41 190.5 11.1 167 6-172 9-175 (218)
68 cd04142 RRP22 RRP22 subfamily. 100.0 1.6E-34 3.5E-39 197.5 20.3 164 11-174 1-176 (198)
69 cd04101 RabL4 RabL4 (Rab-like4 100.0 4E-34 8.6E-39 190.7 21.6 160 11-171 1-163 (164)
70 cd04123 Rab21 Rab21 subfamily. 100.0 5.6E-34 1.2E-38 189.4 22.2 161 11-171 1-161 (162)
71 smart00176 RAN Ran (Ras-relate 100.0 2.3E-34 5E-39 196.5 20.6 155 16-173 1-155 (200)
72 cd04132 Rho4_like Rho4-like su 100.0 3.1E-34 6.8E-39 195.1 20.3 162 11-174 1-169 (187)
73 cd04114 Rab30 Rab30 subfamily. 100.0 1.4E-33 3E-38 188.9 23.1 165 7-171 4-168 (169)
74 cd01873 RhoBTB RhoBTB subfamil 100.0 5.1E-34 1.1E-38 194.5 20.3 158 10-170 2-194 (195)
75 cd04103 Centaurin_gamma Centau 100.0 5.8E-34 1.3E-38 188.5 19.8 154 11-171 1-158 (158)
76 cd01863 Rab18 Rab18 subfamily. 100.0 1.7E-33 3.7E-38 187.1 21.9 160 11-171 1-161 (161)
77 cd04118 Rab24 Rab24 subfamily. 100.0 1.4E-33 3E-38 192.8 21.9 161 11-172 1-166 (193)
78 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-33 2.3E-38 189.4 20.8 162 10-172 1-164 (168)
79 cd04143 Rhes_like Rhes_like su 100.0 7.9E-34 1.7E-38 199.7 21.0 161 11-172 1-171 (247)
80 PLN03118 Rab family protein; P 100.0 2.1E-33 4.7E-38 194.3 22.4 168 5-173 9-178 (211)
81 cd01862 Rab7 Rab7 subfamily. 100.0 2E-33 4.2E-38 188.7 21.6 164 11-174 1-169 (172)
82 cd04146 RERG_RasL11_like RERG/ 100.0 5.1E-34 1.1E-38 190.4 18.5 160 12-172 1-164 (165)
83 cd00154 Rab Rab family. Rab G 100.0 2.7E-33 5.8E-38 185.2 21.3 159 11-169 1-159 (159)
84 smart00174 RHO Rho (Ras homolo 100.0 1.4E-33 3E-38 189.9 20.1 158 13-172 1-172 (174)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-33 2.4E-38 189.4 18.7 162 9-172 3-166 (169)
86 cd04135 Tc10 TC10 subfamily. 100.0 3.1E-33 6.7E-38 188.1 20.7 159 11-171 1-173 (174)
87 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.7E-33 1E-37 187.1 20.8 157 11-169 1-171 (173)
88 cd04148 RGK RGK subfamily. Th 100.0 2.7E-33 5.9E-38 194.6 20.1 161 11-173 1-164 (221)
89 KOG0083 GTPase Rab26/Rab37, sm 100.0 1E-35 2.2E-40 182.9 5.1 162 14-175 1-163 (192)
90 KOG0081 GTPase Rab27, small G 100.0 4E-35 8.7E-40 185.3 7.3 168 6-173 5-182 (219)
91 cd00876 Ras Ras family. The R 100.0 2.6E-32 5.7E-37 181.0 19.9 159 12-171 1-160 (160)
92 cd04139 RalA_RalB RalA/RalB su 100.0 4.7E-32 1E-36 180.5 20.5 161 11-172 1-162 (164)
93 cd04149 Arf6 Arf6 subfamily. 100.0 1.2E-32 2.7E-37 184.1 16.9 156 8-170 7-168 (168)
94 cd01870 RhoA_like RhoA-like su 100.0 8.1E-32 1.7E-36 181.4 20.7 159 11-171 2-174 (175)
95 cd04137 RheB Rheb (Ras Homolog 100.0 1.3E-31 2.8E-36 181.2 20.2 163 11-174 2-165 (180)
96 smart00177 ARF ARF-like small 100.0 1.8E-32 4E-37 184.4 14.9 158 8-172 11-174 (175)
97 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8.1E-33 1.8E-37 184.3 12.9 152 13-169 2-163 (164)
98 cd04129 Rho2 Rho2 subfamily. 100.0 2.9E-31 6.3E-36 180.4 20.7 164 10-175 1-176 (187)
99 cd00157 Rho Rho (Ras homology) 100.0 2.9E-31 6.2E-36 178.0 20.4 157 11-169 1-170 (171)
100 KOG0395 Ras-related GTPase [Ge 100.0 5.2E-32 1.1E-36 183.7 16.7 164 9-173 2-166 (196)
101 cd04147 Ras_dva Ras-dva subfam 100.0 2.1E-31 4.5E-36 182.7 19.7 160 12-172 1-163 (198)
102 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.1E-32 4.5E-37 181.5 14.2 152 11-169 1-158 (159)
103 PLN00223 ADP-ribosylation fact 100.0 1.4E-31 2.9E-36 181.0 17.8 159 8-173 15-179 (181)
104 cd04158 ARD1 ARD1 subfamily. 100.0 1.2E-31 2.5E-36 179.7 16.4 155 12-173 1-162 (169)
105 cd04154 Arl2 Arl2 subfamily. 100.0 2.1E-31 4.6E-36 179.1 17.2 158 5-169 9-172 (173)
106 PTZ00133 ADP-ribosylation fact 100.0 5.6E-32 1.2E-36 183.1 14.3 159 8-173 15-179 (182)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.4E-31 5.1E-36 180.3 16.8 162 9-173 2-171 (183)
108 PTZ00132 GTP-binding nuclear p 100.0 2.3E-30 5E-35 179.6 22.1 166 5-173 4-169 (215)
109 KOG0097 GTPase Rab14, small G 100.0 4.3E-31 9.3E-36 164.3 15.7 166 6-171 7-172 (215)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 2E-30 4.3E-35 177.1 20.6 149 11-159 1-177 (202)
111 cd01893 Miro1 Miro1 subfamily. 100.0 2.4E-30 5.2E-35 172.9 18.9 160 11-173 1-165 (166)
112 cd04157 Arl6 Arl6 subfamily. 100.0 1.3E-30 2.8E-35 173.4 14.7 153 12-170 1-162 (162)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.8E-30 1E-34 172.6 17.5 154 9-169 14-173 (174)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.1E-30 4.7E-35 173.2 15.3 153 12-169 1-166 (167)
115 PF00025 Arf: ADP-ribosylation 100.0 3.5E-30 7.5E-35 173.1 15.8 159 6-171 10-175 (175)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.9E-30 8.4E-35 170.8 15.0 152 12-169 1-159 (160)
117 KOG0073 GTP-binding ADP-ribosy 100.0 1E-29 2.2E-34 161.4 15.2 165 4-173 10-179 (185)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.8E-29 6.2E-34 167.7 16.9 153 12-170 1-167 (167)
119 cd00879 Sar1 Sar1 subfamily. 100.0 3.4E-29 7.4E-34 170.7 17.6 157 8-171 17-190 (190)
120 cd04151 Arl1 Arl1 subfamily. 100.0 6.7E-30 1.5E-34 169.4 13.1 151 12-169 1-157 (158)
121 KOG0393 Ras-related small GTPa 100.0 4E-30 8.6E-35 171.1 11.9 164 8-173 2-180 (198)
122 PTZ00099 rab6; Provisional 100.0 1.2E-28 2.6E-33 165.5 19.2 141 33-173 3-143 (176)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2E-29 4.3E-34 167.1 15.0 151 12-169 1-157 (158)
124 smart00178 SAR Sar1p-like memb 100.0 5.8E-29 1.3E-33 168.7 15.7 158 7-171 14-184 (184)
125 PLN00023 GTP-binding protein; 100.0 2.6E-28 5.6E-33 174.5 18.4 141 7-147 18-189 (334)
126 KOG0070 GTP-binding ADP-ribosy 100.0 6.4E-29 1.4E-33 161.5 11.7 164 6-174 13-180 (181)
127 cd04159 Arl10_like Arl10-like 100.0 9.5E-28 2.1E-32 158.7 16.3 151 13-169 2-158 (159)
128 cd04155 Arl3 Arl3 subfamily. 100.0 2.4E-27 5.1E-32 159.3 17.6 156 5-170 9-173 (173)
129 cd01898 Obg Obg subfamily. Th 100.0 9.5E-28 2.1E-32 160.8 15.4 158 12-171 2-170 (170)
130 cd01897 NOG NOG1 is a nucleola 100.0 1.2E-27 2.6E-32 160.0 15.8 156 11-171 1-167 (168)
131 cd01890 LepA LepA subfamily. 100.0 2E-27 4.4E-32 160.5 16.9 155 12-172 2-177 (179)
132 KOG4252 GTP-binding protein [S 100.0 4.3E-30 9.4E-35 165.6 2.7 167 8-175 18-184 (246)
133 cd01878 HflX HflX subfamily. 100.0 2.1E-27 4.6E-32 163.6 16.0 157 8-171 39-204 (204)
134 PRK12299 obgE GTPase CgtA; Rev 100.0 3.3E-27 7.1E-32 172.2 16.8 164 11-175 159-331 (335)
135 TIGR00231 small_GTP small GTP- 100.0 2.1E-26 4.6E-31 152.0 18.1 158 10-168 1-160 (161)
136 cd04171 SelB SelB subfamily. 100.0 2E-26 4.3E-31 153.4 16.5 152 11-169 1-163 (164)
137 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-25 3.2E-30 146.8 17.8 154 15-169 1-157 (157)
138 COG1100 GTPase SAR1 and relate 99.9 2.2E-25 4.8E-30 155.1 19.3 163 10-172 5-185 (219)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9E-26 2E-30 150.9 16.0 158 12-173 2-167 (168)
140 TIGR02528 EutP ethanolamine ut 99.9 2E-26 4.4E-31 150.1 11.7 134 12-168 2-141 (142)
141 KOG3883 Ras family small GTPas 99.9 4.5E-25 9.8E-30 138.9 16.5 168 9-176 8-179 (198)
142 PRK04213 GTP-binding protein; 99.9 2.5E-26 5.4E-31 157.9 11.9 155 8-175 7-195 (201)
143 cd01879 FeoB Ferrous iron tran 99.9 1.9E-25 4.2E-30 147.8 15.5 149 15-172 1-157 (158)
144 KOG0075 GTP-binding ADP-ribosy 99.9 3.1E-27 6.7E-32 147.6 6.2 160 9-174 19-184 (186)
145 TIGR03156 GTP_HflX GTP-binding 99.9 2E-25 4.3E-30 164.0 16.1 154 9-170 188-350 (351)
146 TIGR02729 Obg_CgtA Obg family 99.9 2.9E-25 6.4E-30 161.8 16.8 159 11-171 158-328 (329)
147 KOG0071 GTP-binding ADP-ribosy 99.9 7.5E-26 1.6E-30 140.4 11.4 159 8-173 15-179 (180)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 8E-26 1.7E-30 154.6 12.7 149 11-163 3-173 (194)
149 PF02421 FeoB_N: Ferrous iron 99.9 2.8E-25 6.1E-30 144.5 13.2 148 11-167 1-156 (156)
150 TIGR00436 era GTP-binding prot 99.9 3.9E-25 8.5E-30 158.1 14.7 154 12-173 2-165 (270)
151 PF08477 Miro: Miro-like prote 99.9 9.7E-25 2.1E-29 138.0 13.3 114 12-126 1-119 (119)
152 cd01881 Obg_like The Obg-like 99.9 9.1E-25 2E-29 147.0 13.4 155 15-170 1-175 (176)
153 PRK15494 era GTPase Era; Provi 99.9 2.1E-24 4.6E-29 158.4 15.6 154 8-172 50-216 (339)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.8E-24 4E-29 142.8 13.8 146 11-171 2-156 (157)
155 PRK03003 GTP-binding protein D 99.9 3.3E-24 7.1E-29 163.9 15.5 161 9-175 210-385 (472)
156 cd00881 GTP_translation_factor 99.9 7.1E-24 1.5E-28 144.1 15.2 157 12-172 1-187 (189)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.3E-24 1.6E-28 159.9 16.6 151 9-173 202-361 (442)
158 PRK12297 obgE GTPase CgtA; Rev 99.9 1.9E-23 4.1E-28 156.1 18.2 158 12-174 160-329 (424)
159 cd01889 SelB_euk SelB subfamil 99.9 7.7E-24 1.7E-28 144.6 14.7 158 11-172 1-186 (192)
160 PRK15467 ethanolamine utilizat 99.9 5.8E-24 1.3E-28 140.6 13.6 140 12-173 3-148 (158)
161 cd01894 EngA1 EngA1 subfamily. 99.9 3.1E-24 6.6E-29 141.8 12.3 146 14-171 1-157 (157)
162 TIGR01393 lepA GTP-binding pro 99.9 1.6E-23 3.5E-28 163.0 18.2 159 10-174 3-182 (595)
163 PRK03003 GTP-binding protein D 99.9 5.3E-24 1.2E-28 162.8 15.2 154 10-173 38-200 (472)
164 PRK05291 trmE tRNA modificatio 99.9 6.6E-24 1.4E-28 160.9 14.6 149 9-173 214-371 (449)
165 PRK12296 obgE GTPase CgtA; Rev 99.9 1.3E-23 2.8E-28 158.9 15.9 162 11-175 160-343 (500)
166 PRK00454 engB GTP-binding prot 99.9 3E-23 6.5E-28 142.0 16.4 159 7-172 21-194 (196)
167 PRK11058 GTPase HflX; Provisio 99.9 1.8E-23 4E-28 156.9 15.7 156 11-172 198-362 (426)
168 KOG1673 Ras GTPases [General f 99.9 1.4E-23 3E-28 132.6 11.8 162 9-171 19-185 (205)
169 TIGR03594 GTPase_EngA ribosome 99.9 4.6E-23 9.9E-28 156.6 16.4 161 8-174 170-346 (429)
170 cd01888 eIF2_gamma eIF2-gamma 99.9 4E-23 8.6E-28 142.1 14.4 161 11-173 1-200 (203)
171 TIGR00487 IF-2 translation ini 99.9 9.6E-23 2.1E-27 158.1 18.0 154 9-170 86-248 (587)
172 cd04163 Era Era subfamily. Er 99.9 8.1E-23 1.8E-27 136.0 15.0 157 10-171 3-168 (168)
173 TIGR03598 GTPase_YsxC ribosome 99.9 5.4E-23 1.2E-27 138.9 14.3 149 6-161 14-179 (179)
174 KOG0072 GTP-binding ADP-ribosy 99.9 2.2E-24 4.7E-29 134.5 5.9 162 7-173 15-180 (182)
175 TIGR00475 selB selenocysteine- 99.9 1.2E-22 2.6E-27 158.1 16.6 155 11-174 1-168 (581)
176 PRK12298 obgE GTPase CgtA; Rev 99.9 1.9E-22 4.2E-27 149.9 16.7 160 12-173 161-334 (390)
177 PRK00089 era GTPase Era; Revie 99.9 1.5E-22 3.2E-27 146.6 15.4 159 9-172 4-171 (292)
178 KOG0076 GTP-binding ADP-ribosy 99.9 8.8E-24 1.9E-28 135.8 7.7 164 7-174 14-189 (197)
179 PF00009 GTP_EFTU: Elongation 99.9 3.3E-23 7.2E-28 140.9 10.5 159 9-171 2-186 (188)
180 CHL00189 infB translation init 99.9 2.1E-22 4.5E-27 158.5 16.1 160 8-171 242-409 (742)
181 cd01895 EngA2 EngA2 subfamily. 99.9 8.2E-22 1.8E-26 132.1 16.5 155 10-170 2-173 (174)
182 cd04105 SR_beta Signal recogni 99.9 4.5E-22 9.7E-27 136.7 15.0 117 12-129 2-123 (203)
183 PRK05306 infB translation init 99.9 3.2E-22 6.9E-27 158.8 15.9 154 8-170 288-450 (787)
184 PRK09554 feoB ferrous iron tra 99.9 7.6E-22 1.7E-26 157.1 17.6 153 10-171 3-167 (772)
185 PRK05433 GTP-binding protein L 99.9 9.6E-22 2.1E-26 153.3 17.6 162 7-174 4-186 (600)
186 TIGR00437 feoB ferrous iron tr 99.9 4.5E-22 9.8E-27 155.0 15.7 146 17-171 1-154 (591)
187 KOG0074 GTP-binding ADP-ribosy 99.9 1.6E-22 3.5E-27 125.8 9.9 163 6-172 13-179 (185)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.3E-22 2.7E-27 132.3 9.7 169 1-172 1-169 (216)
189 TIGR03594 GTPase_EngA ribosome 99.9 5.8E-22 1.2E-26 150.6 14.8 151 12-173 1-161 (429)
190 PRK00093 GTP-binding protein D 99.9 1.4E-21 3E-26 148.7 16.5 148 11-171 2-161 (435)
191 COG1159 Era GTPase [General fu 99.9 9.5E-22 2.1E-26 137.6 13.9 161 8-173 4-173 (298)
192 cd00880 Era_like Era (E. coli 99.9 8.8E-22 1.9E-26 130.0 13.2 152 15-171 1-163 (163)
193 PRK00093 GTP-binding protein D 99.9 1E-21 2.2E-26 149.5 14.7 160 8-174 171-346 (435)
194 TIGR00483 EF-1_alpha translati 99.9 1E-21 2.3E-26 148.7 14.1 155 6-162 3-197 (426)
195 PRK09518 bifunctional cytidyla 99.9 3.9E-21 8.5E-26 153.3 16.5 156 8-173 273-437 (712)
196 PRK09518 bifunctional cytidyla 99.9 4.9E-21 1.1E-25 152.7 16.7 159 9-174 449-623 (712)
197 cd01896 DRG The developmentall 99.9 4E-20 8.6E-25 129.4 17.6 156 12-176 2-230 (233)
198 TIGR00491 aIF-2 translation in 99.9 9.5E-21 2.1E-25 146.9 15.5 155 10-171 4-215 (590)
199 PRK12317 elongation factor 1-a 99.9 5.2E-21 1.1E-25 144.9 13.7 155 7-163 3-196 (425)
200 COG2229 Predicted GTPase [Gene 99.9 2.2E-20 4.8E-25 121.7 14.5 160 5-170 5-176 (187)
201 TIGR01394 TypA_BipA GTP-bindin 99.9 8.2E-21 1.8E-25 147.8 14.8 160 11-174 2-193 (594)
202 TIGR03680 eif2g_arch translati 99.9 1.2E-20 2.5E-25 142.0 14.8 164 8-173 2-197 (406)
203 cd01876 YihA_EngB The YihA (En 99.9 2.8E-20 6E-25 124.1 14.8 153 12-171 1-170 (170)
204 PRK10218 GTP-binding protein; 99.9 4.5E-20 9.8E-25 143.6 17.5 162 9-174 4-197 (607)
205 PRK04000 translation initiatio 99.9 1.9E-20 4.2E-25 140.7 15.0 168 4-173 3-202 (411)
206 KOG4423 GTP-binding protein-li 99.9 2.3E-23 5E-28 135.3 -2.1 168 8-175 23-197 (229)
207 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.7E-20 3.7E-25 129.5 11.8 150 12-164 1-186 (208)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.5E-19 3.2E-24 123.2 16.2 148 9-160 1-171 (195)
209 cd04168 TetM_like Tet(M)-like 99.8 4.8E-20 1E-24 129.2 13.3 113 12-128 1-129 (237)
210 COG1160 Predicted GTPases [Gen 99.8 2.9E-20 6.2E-25 136.9 12.4 150 11-171 4-164 (444)
211 COG0486 ThdF Predicted GTPase 99.8 4.3E-20 9.4E-25 136.3 13.0 154 9-174 216-378 (454)
212 PRK04004 translation initiatio 99.8 2.3E-19 4.9E-24 139.7 16.9 155 9-170 5-216 (586)
213 PRK10512 selenocysteinyl-tRNA- 99.8 2.6E-19 5.6E-24 140.0 17.1 156 12-172 2-166 (614)
214 cd04167 Snu114p Snu114p subfam 99.8 1.7E-19 3.6E-24 125.0 13.2 157 12-172 2-211 (213)
215 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.9E-19 4.2E-24 124.6 13.4 158 12-171 1-175 (232)
216 KOG1423 Ras-like GTPase ERA [C 99.8 2.5E-19 5.5E-24 125.4 14.0 163 6-172 68-271 (379)
217 COG0218 Predicted GTPase [Gene 99.8 5.9E-19 1.3E-23 117.4 15.0 159 7-173 21-198 (200)
218 PRK12736 elongation factor Tu; 99.8 3.9E-19 8.5E-24 133.2 15.8 164 5-172 7-201 (394)
219 cd01883 EF1_alpha Eukaryotic e 99.8 8E-20 1.7E-24 127.0 11.0 149 12-162 1-195 (219)
220 PF10662 PduV-EutP: Ethanolami 99.8 3.8E-19 8.3E-24 113.4 12.1 135 12-168 3-142 (143)
221 PRK12735 elongation factor Tu; 99.8 9.4E-19 2E-23 131.3 15.8 164 5-172 7-203 (396)
222 TIGR00485 EF-Tu translation el 99.8 6.7E-19 1.5E-23 132.1 15.0 161 5-169 7-198 (394)
223 COG2262 HflX GTPases [General 99.8 2.2E-18 4.7E-23 125.4 15.5 161 6-173 188-357 (411)
224 COG0370 FeoB Fe2+ transport sy 99.8 2.4E-18 5.1E-23 132.2 16.2 154 10-172 3-164 (653)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.1E-18 6.8E-23 119.0 15.1 154 12-169 1-220 (224)
226 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.6E-23 127.7 14.1 159 9-174 177-353 (444)
227 KOG1489 Predicted GTP-binding 99.8 4E-18 8.7E-23 120.0 14.2 155 11-170 197-365 (366)
228 CHL00071 tufA elongation facto 99.8 6.6E-18 1.4E-22 127.2 16.3 150 5-158 7-179 (409)
229 PRK00049 elongation factor Tu; 99.8 1.1E-17 2.4E-22 125.5 16.1 164 5-172 7-203 (396)
230 PLN03126 Elongation factor Tu; 99.8 9.6E-18 2.1E-22 127.7 16.0 150 5-158 76-248 (478)
231 cd04169 RF3 RF3 subfamily. Pe 99.8 1.9E-17 4.1E-22 118.0 15.3 116 11-130 3-138 (267)
232 PLN00043 elongation factor 1-a 99.8 1E-17 2.2E-22 127.0 14.5 153 6-162 3-203 (447)
233 COG1084 Predicted GTPase [Gene 99.8 2E-17 4.3E-22 117.2 14.4 157 9-170 167-334 (346)
234 cd01885 EF2 EF2 (for archaea a 99.8 1.5E-17 3.3E-22 115.2 13.5 113 12-128 2-138 (222)
235 KOG0077 Vesicle coat complex C 99.8 2.2E-18 4.9E-23 110.3 8.3 156 9-171 19-192 (193)
236 cd01886 EF-G Elongation factor 99.8 1.4E-17 3.1E-22 118.7 13.2 113 12-128 1-129 (270)
237 PRK05124 cysN sulfate adenylyl 99.8 9.2E-18 2E-22 128.2 12.9 155 6-163 23-216 (474)
238 cd01850 CDC_Septin CDC/Septin. 99.8 3.8E-17 8.2E-22 116.9 15.1 143 9-156 3-186 (276)
239 PRK00741 prfC peptide chain re 99.8 2.3E-17 5.1E-22 127.1 14.9 117 8-128 8-144 (526)
240 PLN03127 Elongation factor Tu; 99.8 3.2E-17 7E-22 124.2 15.3 164 5-172 56-252 (447)
241 KOG1707 Predicted Ras related/ 99.8 5.3E-18 1.1E-22 127.6 10.6 168 5-174 4-177 (625)
242 PTZ00141 elongation factor 1- 99.8 4E-17 8.7E-22 123.9 14.6 154 6-162 3-203 (446)
243 cd04170 EF-G_bact Elongation f 99.8 5.9E-18 1.3E-22 121.1 9.4 150 12-167 1-168 (268)
244 cd04104 p47_IIGP_like p47 (47- 99.8 6.9E-17 1.5E-21 110.6 14.2 157 10-174 1-186 (197)
245 COG0532 InfB Translation initi 99.7 1.2E-16 2.5E-21 119.9 15.2 160 9-174 4-172 (509)
246 TIGR02034 CysN sulfate adenyly 99.7 3.3E-17 7.2E-22 123.3 12.3 149 11-162 1-187 (406)
247 cd01899 Ygr210 Ygr210 subfamil 99.7 1.3E-16 2.8E-21 115.8 14.2 156 13-172 1-269 (318)
248 KOG0462 Elongation factor-type 99.7 1.2E-16 2.5E-21 119.8 13.9 164 8-175 58-238 (650)
249 PRK13351 elongation factor G; 99.7 8.5E-17 1.8E-21 128.5 13.9 119 7-129 5-139 (687)
250 COG1163 DRG Predicted GTPase [ 99.7 4.8E-16 1E-20 110.0 15.9 157 10-175 63-292 (365)
251 PTZ00327 eukaryotic translatio 99.7 1.6E-16 3.4E-21 120.5 14.4 166 6-173 30-234 (460)
252 TIGR00503 prfC peptide chain r 99.7 3.2E-16 6.9E-21 120.9 15.8 118 7-128 8-145 (527)
253 COG0536 Obg Predicted GTPase [ 99.7 1E-16 2.3E-21 114.1 11.8 162 12-175 161-336 (369)
254 COG5256 TEF1 Translation elong 99.7 1.2E-16 2.6E-21 116.4 12.3 158 6-164 3-203 (428)
255 PRK05506 bifunctional sulfate 99.7 1.4E-16 3.1E-21 126.0 13.7 153 7-162 21-211 (632)
256 PF09439 SRPRB: Signal recogni 99.7 1.5E-17 3.2E-22 110.7 6.4 118 10-131 3-128 (181)
257 COG3596 Predicted GTPase [Gene 99.7 8.3E-17 1.8E-21 111.7 10.2 162 7-172 36-222 (296)
258 PF01926 MMR_HSR1: 50S ribosom 99.7 6.5E-16 1.4E-20 97.1 12.9 106 12-124 1-116 (116)
259 COG0481 LepA Membrane GTPase L 99.7 7.3E-16 1.6E-20 114.0 14.2 162 8-175 7-189 (603)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 8.2E-16 1.8E-20 105.3 13.0 159 11-173 1-185 (196)
261 PRK12739 elongation factor G; 99.7 1.8E-15 3.9E-20 120.8 15.9 117 7-129 5-139 (691)
262 KOG1145 Mitochondrial translat 99.7 1.9E-15 4.2E-20 113.4 14.8 157 9-172 152-316 (683)
263 TIGR00484 EF-G translation elo 99.7 1.7E-15 3.8E-20 120.9 14.3 121 6-130 6-142 (689)
264 KOG1191 Mitochondrial GTPase [ 99.7 2.5E-16 5.3E-21 116.8 8.6 166 8-174 266-452 (531)
265 KOG0090 Signal recognition par 99.7 1.2E-15 2.6E-20 101.9 10.5 157 9-171 37-238 (238)
266 PRK09866 hypothetical protein; 99.7 8.2E-15 1.8E-19 112.9 16.2 110 59-170 230-351 (741)
267 PRK09602 translation-associate 99.6 1.4E-14 3.1E-19 108.3 15.1 83 11-93 2-113 (396)
268 PRK00007 elongation factor G; 99.6 1.8E-14 3.9E-19 115.1 14.3 121 7-131 7-143 (693)
269 cd00066 G-alpha G protein alph 99.6 5.1E-14 1.1E-18 102.9 13.2 120 57-176 159-315 (317)
270 PRK12740 elongation factor G; 99.6 5.2E-14 1.1E-18 112.4 14.3 109 16-128 1-125 (668)
271 KOG1707 Predicted Ras related/ 99.6 1.4E-13 3.1E-18 104.1 14.6 163 8-175 423-586 (625)
272 KOG1490 GTP-binding protein CR 99.6 8.8E-15 1.9E-19 108.9 8.0 165 7-174 165-343 (620)
273 TIGR00101 ureG urease accessor 99.6 1.1E-13 2.4E-18 94.6 12.9 103 59-172 92-196 (199)
274 COG4917 EutP Ethanolamine util 99.6 1.9E-14 4E-19 88.3 7.7 137 12-170 3-144 (148)
275 cd01853 Toc34_like Toc34-like 99.6 7.2E-14 1.6E-18 98.5 11.8 121 6-129 27-163 (249)
276 TIGR00157 ribosome small subun 99.6 2.3E-14 5E-19 101.0 9.3 99 70-172 24-123 (245)
277 TIGR00490 aEF-2 translation el 99.6 1.6E-14 3.4E-19 115.8 9.3 120 6-129 15-152 (720)
278 PRK14845 translation initiatio 99.6 1.7E-13 3.7E-18 112.0 15.1 143 21-170 472-671 (1049)
279 smart00010 small_GTPase Small 99.6 5.1E-14 1.1E-18 89.3 9.3 114 11-161 1-115 (124)
280 KOG3905 Dynein light intermedi 99.5 3.6E-13 7.9E-18 95.7 13.9 163 9-174 51-292 (473)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.2E-13 4.7E-18 97.7 12.5 118 8-129 36-167 (313)
282 PTZ00258 GTP-binding protein; 99.5 3.4E-13 7.4E-18 100.0 13.1 86 8-93 19-126 (390)
283 PRK13768 GTPase; Provisional 99.5 2.9E-13 6.2E-18 96.0 12.0 112 60-172 98-247 (253)
284 smart00275 G_alpha G protein a 99.5 2.9E-13 6.4E-18 99.7 12.2 117 58-174 183-336 (342)
285 KOG0458 Elongation factor 1 al 99.5 3.1E-13 6.8E-18 102.3 12.0 155 6-163 173-373 (603)
286 PF04548 AIG1: AIG1 family; I 99.5 1.7E-13 3.6E-18 94.9 9.6 159 11-173 1-187 (212)
287 COG2895 CysN GTPases - Sulfate 99.5 6.8E-13 1.5E-17 95.2 12.5 153 7-162 3-193 (431)
288 KOG1532 GTPase XAB1, interacts 99.5 1.8E-14 3.9E-19 100.0 4.2 170 5-174 14-266 (366)
289 COG5257 GCD11 Translation init 99.5 1.7E-13 3.6E-18 97.2 9.0 172 1-174 1-204 (415)
290 COG1217 TypA Predicted membran 99.5 7.8E-13 1.7E-17 98.0 12.4 163 9-175 4-198 (603)
291 PRK09435 membrane ATPase/prote 99.5 7.4E-13 1.6E-17 96.6 11.7 106 58-174 148-262 (332)
292 TIGR00073 hypB hydrogenase acc 99.5 6.3E-13 1.4E-17 91.7 10.8 152 9-171 21-206 (207)
293 KOG3886 GTP-binding protein [S 99.5 2.7E-13 5.9E-18 91.9 8.4 156 10-168 4-174 (295)
294 PF03029 ATP_bind_1: Conserved 99.5 8.2E-14 1.8E-18 97.6 5.7 112 60-171 92-236 (238)
295 PLN00116 translation elongatio 99.5 4.3E-13 9.3E-18 109.1 10.6 120 5-128 14-163 (843)
296 PTZ00416 elongation factor 2; 99.5 5.1E-13 1.1E-17 108.6 10.7 118 7-128 16-157 (836)
297 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.3E-12 7.2E-17 89.2 13.3 140 7-158 36-182 (225)
298 PRK07560 elongation factor EF- 99.5 2.6E-12 5.7E-17 103.4 14.4 119 6-128 16-152 (731)
299 PF05783 DLIC: Dynein light in 99.4 9.8E-12 2.1E-16 94.5 15.4 164 8-174 23-266 (472)
300 KOG3887 Predicted small GTPase 99.4 1.3E-12 2.8E-17 89.4 9.2 159 10-171 27-201 (347)
301 PRK09601 GTP-binding protein Y 99.4 1.3E-11 2.9E-16 90.7 15.1 83 11-93 3-107 (364)
302 COG0378 HypB Ni2+-binding GTPa 99.4 2.1E-12 4.6E-17 85.8 9.5 150 10-171 13-200 (202)
303 KOG0461 Selenocysteine-specifi 99.4 1.1E-11 2.5E-16 88.9 13.5 165 7-175 4-196 (522)
304 PF05049 IIGP: Interferon-indu 99.4 4.1E-12 8.9E-17 93.5 9.3 161 8-175 33-221 (376)
305 COG4108 PrfC Peptide chain rel 99.4 7.2E-12 1.6E-16 92.3 10.3 116 9-128 11-146 (528)
306 TIGR00750 lao LAO/AO transport 99.4 8.8E-12 1.9E-16 90.6 10.5 104 58-172 126-238 (300)
307 KOG0082 G-protein alpha subuni 99.4 2E-11 4.3E-16 88.8 12.1 127 46-174 184-346 (354)
308 TIGR02836 spore_IV_A stage IV 99.3 9.5E-11 2.1E-15 86.7 14.8 154 9-167 16-232 (492)
309 KOG1144 Translation initiation 99.3 3.8E-12 8.2E-17 99.0 7.7 157 9-172 474-687 (1064)
310 COG0480 FusA Translation elong 99.3 2E-11 4.3E-16 96.6 10.7 125 1-129 1-142 (697)
311 PF00350 Dynamin_N: Dynamin fa 99.3 4.6E-11 1E-15 79.8 10.5 62 61-125 103-168 (168)
312 PF03308 ArgK: ArgK protein; 99.3 2.3E-12 4.9E-17 89.6 4.2 153 9-173 28-231 (266)
313 KOG0410 Predicted GTP binding 99.3 6E-12 1.3E-16 89.5 5.9 152 9-172 177-341 (410)
314 COG3276 SelB Selenocysteine-sp 99.3 4.7E-11 1E-15 88.2 10.6 158 11-172 1-162 (447)
315 PF00735 Septin: Septin; Inte 99.3 1.3E-10 2.9E-15 83.4 12.2 139 10-153 4-182 (281)
316 KOG1486 GTP-binding protein DR 99.3 7E-10 1.5E-14 76.7 14.6 87 10-98 62-155 (364)
317 COG0050 TufB GTPases - transla 99.3 1.5E-10 3.3E-15 81.5 11.5 164 5-172 7-201 (394)
318 KOG0468 U5 snRNP-specific prot 99.3 4E-11 8.7E-16 92.5 9.3 119 5-127 123-261 (971)
319 smart00053 DYNc Dynamin, GTPas 99.2 2.1E-10 4.5E-15 80.3 11.1 68 59-129 125-206 (240)
320 COG1703 ArgK Putative periplas 99.2 1.8E-10 3.9E-15 81.5 10.4 106 57-173 142-255 (323)
321 PRK10463 hydrogenase nickel in 99.2 7.5E-11 1.6E-15 84.2 7.7 56 116-171 231-288 (290)
322 TIGR00993 3a0901s04IAP86 chlor 99.2 4.5E-10 9.9E-15 87.6 12.1 120 8-129 116-250 (763)
323 KOG0705 GTPase-activating prot 99.2 6.4E-11 1.4E-15 89.6 6.4 160 8-174 28-191 (749)
324 cd01900 YchF YchF subfamily. 99.2 1.3E-10 2.9E-15 82.8 7.1 81 13-93 1-103 (274)
325 cd01859 MJ1464 MJ1464. This f 99.1 1.9E-10 4.2E-15 75.9 6.7 94 73-172 3-96 (156)
326 cd01855 YqeH YqeH. YqeH is an 99.1 4.3E-10 9.4E-15 76.6 8.6 93 72-171 24-124 (190)
327 PF00503 G-alpha: G-protein al 99.1 3.7E-09 8E-14 79.8 14.0 113 59-171 236-389 (389)
328 COG0012 Predicted GTPase, prob 99.1 8.5E-09 1.8E-13 75.4 14.2 84 10-93 2-108 (372)
329 PRK12289 GTPase RsgA; Reviewed 99.1 9.1E-10 2E-14 81.3 9.4 92 75-171 82-174 (352)
330 COG5019 CDC3 Septin family pro 99.1 3.7E-09 8.1E-14 76.8 12.2 139 8-151 21-200 (373)
331 cd01854 YjeQ_engC YjeQ/EngC. 99.1 8.3E-10 1.8E-14 79.8 8.5 89 77-170 73-162 (287)
332 PRK12288 GTPase RsgA; Reviewed 99.1 1.9E-09 4.2E-14 79.6 9.9 91 80-173 118-209 (347)
333 PRK00098 GTPase RsgA; Reviewed 99.0 1.3E-09 2.7E-14 79.3 8.2 89 79-171 77-166 (298)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 8.8E-10 1.9E-14 71.6 6.2 54 12-69 85-138 (141)
335 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.5E-09 3.2E-14 71.8 7.1 57 9-69 101-157 (157)
336 KOG1143 Predicted translation 99.0 2.3E-09 4.9E-14 78.1 8.0 155 9-167 166-383 (591)
337 cd04178 Nucleostemin_like Nucl 99.0 1.8E-09 3.9E-14 72.2 6.9 57 9-69 116-172 (172)
338 KOG2655 Septin family protein 98.9 4E-08 8.7E-13 71.9 12.4 143 9-156 20-201 (366)
339 KOG2486 Predicted GTPase [Gene 98.9 3.8E-09 8.3E-14 74.0 6.4 157 7-170 133-314 (320)
340 KOG0460 Mitochondrial translat 98.9 1.7E-08 3.7E-13 72.7 9.7 151 6-159 50-225 (449)
341 KOG1547 Septin CDC10 and relat 98.9 4.9E-08 1.1E-12 67.2 11.1 152 9-165 45-236 (336)
342 cd01856 YlqF YlqF. Proteins o 98.9 7.3E-09 1.6E-13 69.4 7.0 58 8-69 113-170 (171)
343 TIGR03597 GTPase_YqeH ribosome 98.9 1E-08 2.2E-13 76.5 8.3 95 69-170 50-151 (360)
344 cd01859 MJ1464 MJ1464. This f 98.9 8.1E-09 1.8E-13 68.1 7.1 57 8-68 99-155 (156)
345 cd01855 YqeH YqeH. YqeH is an 98.9 5.3E-09 1.2E-13 71.3 6.0 57 10-69 127-190 (190)
346 KOG1954 Endocytosis/signaling 98.8 1.4E-08 3E-13 74.0 7.5 121 9-132 57-228 (532)
347 TIGR03596 GTPase_YlqF ribosome 98.8 1.3E-08 2.9E-13 73.2 7.3 58 8-69 116-173 (276)
348 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.8E-08 3.9E-13 72.9 8.0 58 8-69 119-176 (287)
349 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.4E-08 5.1E-13 66.0 7.4 90 79-171 5-94 (157)
350 COG1161 Predicted GTPases [Gen 98.8 1.4E-08 3.1E-13 74.4 6.5 58 8-69 130-187 (322)
351 COG5258 GTPBP1 GTPase [General 98.8 6.6E-08 1.4E-12 70.9 9.0 160 5-168 112-335 (527)
352 TIGR00092 GTP-binding protein 98.8 3.9E-08 8.5E-13 72.7 7.6 83 11-93 3-108 (368)
353 COG5192 BMS1 GTP-binding prote 98.8 1.7E-07 3.7E-12 72.0 11.0 138 7-155 66-209 (1077)
354 PF03193 DUF258: Protein of un 98.8 1.3E-08 2.9E-13 66.7 4.5 60 11-73 36-101 (161)
355 cd01856 YlqF YlqF. Proteins o 98.8 3.3E-08 7.2E-13 66.3 6.5 98 66-171 2-100 (171)
356 cd01849 YlqF_related_GTPase Yl 98.7 6.4E-08 1.4E-12 63.8 7.4 83 84-170 1-83 (155)
357 KOG0448 Mitofusin 1 GTPase, in 98.7 5.3E-07 1.1E-11 70.5 12.9 144 8-155 107-309 (749)
358 COG1618 Predicted nucleotide k 98.7 2.7E-06 5.9E-11 55.3 14.1 147 9-173 4-177 (179)
359 KOG0085 G protein subunit Galp 98.7 1.1E-08 2.3E-13 70.2 3.1 123 54-176 194-353 (359)
360 cd01849 YlqF_related_GTPase Yl 98.7 5.1E-08 1.1E-12 64.3 6.2 57 8-68 98-154 (155)
361 KOG1487 GTP-binding protein DR 98.7 5.3E-07 1.2E-11 63.0 10.6 155 11-175 60-284 (358)
362 PF09547 Spore_IV_A: Stage IV 98.7 2.9E-06 6.4E-11 63.4 14.6 152 10-166 17-231 (492)
363 KOG0466 Translation initiation 98.6 1.3E-08 2.8E-13 72.4 2.0 164 8-173 36-242 (466)
364 KOG1491 Predicted GTP-binding 98.6 2.3E-07 5E-12 67.0 7.9 86 8-93 18-125 (391)
365 KOG0099 G protein subunit Galp 98.6 1.9E-07 4E-12 65.3 7.1 120 57-176 200-373 (379)
366 KOG0467 Translation elongation 98.6 2.4E-07 5.1E-12 73.1 8.3 118 6-127 5-136 (887)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.3E-07 5.1E-12 60.2 7.2 76 78-159 7-84 (141)
368 KOG4273 Uncharacterized conser 98.6 9.4E-07 2E-11 61.5 10.3 156 10-170 4-220 (418)
369 cd01851 GBP Guanylate-binding 98.6 2.2E-06 4.7E-11 60.0 12.0 98 7-104 4-114 (224)
370 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 70.2 5.8 59 12-73 207-271 (347)
371 PRK10416 signal recognition pa 98.6 9.2E-08 2E-12 70.0 4.9 141 10-163 114-301 (318)
372 KOG0463 GTP-binding protein GP 98.6 1.3E-07 2.9E-12 69.3 5.5 155 9-167 132-353 (641)
373 TIGR03596 GTPase_YlqF ribosome 98.6 2.4E-07 5.1E-12 66.8 6.8 99 66-172 4-103 (276)
374 PRK12289 GTPase RsgA; Reviewed 98.6 1.5E-07 3.2E-12 69.8 5.6 55 12-70 174-235 (352)
375 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.3E-07 7.1E-12 66.5 6.9 99 66-172 7-106 (287)
376 TIGR00064 ftsY signal recognit 98.5 1.5E-07 3.2E-12 67.6 4.8 94 58-164 154-260 (272)
377 PRK01889 GTPase RsgA; Reviewed 98.5 6.8E-07 1.5E-11 66.6 8.3 84 80-169 110-194 (356)
378 COG1162 Predicted GTPases [Gen 98.5 2E-07 4.3E-12 66.8 5.1 59 12-73 166-230 (301)
379 cd03112 CobW_like The function 98.5 8.5E-07 1.8E-11 58.6 7.8 64 58-127 86-158 (158)
380 PRK13796 GTPase YqeH; Provisio 98.5 2.7E-07 5.9E-12 69.0 5.7 57 10-69 160-220 (365)
381 TIGR03597 GTPase_YqeH ribosome 98.5 4.4E-07 9.5E-12 67.8 6.7 57 11-70 155-215 (360)
382 PRK13796 GTPase YqeH; Provisio 98.5 1.3E-06 2.9E-11 65.4 9.1 93 71-171 58-158 (365)
383 TIGR00157 ribosome small subun 98.5 4.5E-07 9.7E-12 64.2 6.0 57 11-71 121-183 (245)
384 PRK14974 cell division protein 98.5 2.4E-07 5.3E-12 68.1 4.7 93 59-164 223-322 (336)
385 KOG0464 Elongation factor G [T 98.5 3E-08 6.5E-13 73.4 -0.0 117 9-129 36-168 (753)
386 KOG0465 Mitochondrial elongati 98.4 3.3E-07 7.1E-12 70.7 5.2 116 9-128 38-169 (721)
387 KOG0447 Dynamin-like GTP bindi 98.4 9.6E-06 2.1E-10 62.5 12.8 96 60-157 413-526 (980)
388 TIGR03348 VI_IcmF type VI secr 98.4 1.3E-06 2.8E-11 74.3 9.0 112 13-128 114-256 (1169)
389 COG1162 Predicted GTPases [Gen 98.4 5.2E-06 1.1E-10 59.7 9.5 95 79-176 76-171 (301)
390 KOG0459 Polypeptide release fa 98.4 1.3E-06 2.9E-11 64.5 6.4 158 7-165 76-279 (501)
391 KOG1424 Predicted GTP-binding 98.3 8.7E-07 1.9E-11 67.2 5.0 56 10-69 314-369 (562)
392 PRK13695 putative NTPase; Prov 98.3 3E-05 6.4E-10 52.1 11.9 22 11-32 1-22 (174)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.1E-06 4.6E-11 62.2 6.1 59 11-72 162-226 (287)
394 PRK00098 GTPase RsgA; Reviewed 98.3 2.2E-06 4.7E-11 62.5 5.9 57 11-71 165-228 (298)
395 COG3640 CooC CO dehydrogenase 98.2 8.7E-05 1.9E-09 51.4 12.2 48 78-128 151-198 (255)
396 TIGR01425 SRP54_euk signal rec 98.2 7.2E-06 1.6E-10 62.2 7.3 65 58-128 182-252 (429)
397 cd03114 ArgK-like The function 98.2 1.4E-05 2.9E-10 52.3 7.6 58 58-126 91-148 (148)
398 PF11111 CENP-M: Centromere pr 98.2 0.00018 3.9E-09 47.5 12.6 140 9-172 14-153 (176)
399 cd03115 SRP The signal recogni 98.1 2.9E-05 6.3E-10 52.1 8.4 83 58-150 82-170 (173)
400 COG0523 Putative GTPases (G3E 98.1 0.00012 2.6E-09 53.8 11.7 97 59-164 85-193 (323)
401 PRK14722 flhF flagellar biosyn 98.1 8.8E-05 1.9E-09 55.5 11.0 140 10-153 137-315 (374)
402 KOG0469 Elongation factor 2 [T 98.1 1.4E-05 3E-10 61.0 6.7 119 5-127 14-162 (842)
403 KOG2484 GTPase [General functi 98.1 5E-06 1.1E-10 61.4 4.1 58 8-69 250-307 (435)
404 PF00448 SRP54: SRP54-type pro 98.0 1.1E-06 2.3E-11 60.2 0.2 84 59-153 84-174 (196)
405 PF06858 NOG1: Nucleolar GTP-b 98.0 3.3E-05 7.2E-10 41.3 5.7 44 82-126 13-58 (58)
406 PF02492 cobW: CobW/HypB/UreG, 98.0 1.6E-05 3.5E-10 53.6 5.3 68 59-131 85-157 (178)
407 KOG1534 Putative transcription 98.0 3.5E-05 7.7E-10 52.5 6.4 23 10-32 3-25 (273)
408 COG3523 IcmF Type VI protein s 98.0 2E-05 4.3E-10 66.2 6.3 113 13-129 128-270 (1188)
409 PRK11537 putative GTP-binding 98.0 0.00017 3.8E-09 53.1 10.4 85 59-153 91-186 (318)
410 cd02042 ParA ParA and ParB of 97.9 9.8E-05 2.1E-09 45.1 7.5 82 13-106 2-84 (104)
411 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.3E-10 54.4 3.3 23 11-33 1-23 (178)
412 PRK00771 signal recognition pa 97.9 2.3E-05 5E-10 59.8 5.5 85 59-153 176-266 (437)
413 KOG3859 Septins (P-loop GTPase 97.9 3.2E-05 6.9E-10 54.9 5.5 61 9-69 41-105 (406)
414 PRK12727 flagellar biosynthesi 97.9 0.00056 1.2E-08 53.4 12.4 134 10-153 350-518 (559)
415 COG0194 Gmk Guanylate kinase [ 97.9 9.1E-06 2E-10 54.3 2.5 49 10-60 4-52 (191)
416 cd02038 FleN-like FleN is a me 97.9 9.2E-05 2E-09 47.9 7.2 106 15-128 5-110 (139)
417 cd00009 AAA The AAA+ (ATPases 97.9 0.00022 4.7E-09 45.8 9.0 25 10-34 19-43 (151)
418 PRK10867 signal recognition pa 97.9 2.7E-05 5.9E-10 59.4 5.1 86 58-153 183-274 (433)
419 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00027 5.8E-09 42.2 8.6 69 13-95 2-71 (99)
420 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.5E-10 50.0 3.2 22 12-33 1-22 (121)
421 PRK08118 topology modulation p 97.9 1.6E-05 3.5E-10 53.0 3.4 23 11-33 2-24 (167)
422 TIGR00959 ffh signal recogniti 97.9 2.3E-05 5.1E-10 59.7 4.6 87 58-154 182-274 (428)
423 PRK07261 topology modulation p 97.9 1.6E-05 3.5E-10 53.3 3.3 23 11-33 1-23 (171)
424 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00045 9.8E-09 46.5 9.9 25 10-34 25-49 (177)
425 KOG2485 Conserved ATP/GTP bind 97.8 6E-05 1.3E-09 54.2 5.8 61 8-69 141-206 (335)
426 PF13555 AAA_29: P-loop contai 97.8 2.8E-05 6E-10 42.6 3.1 21 12-32 25-45 (62)
427 PF03266 NTPase_1: NTPase; In 97.8 0.00012 2.6E-09 48.9 6.3 134 12-160 1-163 (168)
428 PF13671 AAA_33: AAA domain; P 97.7 2.6E-05 5.6E-10 50.5 3.0 20 13-32 2-21 (143)
429 COG3845 ABC-type uncharacteriz 97.7 0.00036 7.8E-09 53.3 9.2 50 76-126 152-201 (501)
430 cd03111 CpaE_like This protein 97.7 0.00027 5.9E-09 43.4 7.0 99 17-124 7-106 (106)
431 PRK14737 gmk guanylate kinase; 97.7 3.2E-05 6.9E-10 52.6 3.0 23 11-33 5-27 (186)
432 TIGR00150 HI0065_YjeE ATPase, 97.7 0.00028 6.1E-09 45.1 7.1 25 10-34 22-46 (133)
433 PRK14738 gmk guanylate kinase; 97.7 5.1E-05 1.1E-09 52.4 3.8 27 7-33 10-36 (206)
434 cd02019 NK Nucleoside/nucleoti 97.7 5.4E-05 1.2E-09 42.7 3.2 21 13-33 2-22 (69)
435 TIGR02475 CobW cobalamin biosy 97.7 0.001 2.2E-08 49.6 10.8 21 13-33 7-27 (341)
436 KOG2423 Nucleolar GTPase [Gene 97.7 1.7E-05 3.7E-10 58.8 1.3 85 6-97 303-389 (572)
437 COG1116 TauB ABC-type nitrate/ 97.7 4.2E-05 9E-10 53.5 3.0 23 12-34 31-53 (248)
438 COG1126 GlnQ ABC-type polar am 97.6 6.4E-05 1.4E-09 51.5 3.7 25 11-35 29-53 (240)
439 TIGR00235 udk uridine kinase. 97.6 7.6E-05 1.7E-09 51.6 4.2 26 7-32 3-28 (207)
440 PRK12724 flagellar biosynthesi 97.6 0.00029 6.4E-09 53.4 7.4 23 10-32 223-245 (432)
441 KOG0780 Signal recognition par 97.6 2.6E-05 5.5E-10 57.7 1.8 93 10-102 101-233 (483)
442 cd00071 GMPK Guanosine monopho 97.6 7E-05 1.5E-09 48.3 3.5 21 13-33 2-22 (137)
443 PRK06217 hypothetical protein; 97.6 6.4E-05 1.4E-09 50.9 3.5 23 11-33 2-24 (183)
444 PRK05703 flhF flagellar biosyn 97.6 0.00071 1.5E-08 51.8 9.3 85 58-153 299-391 (424)
445 PRK12726 flagellar biosynthesi 97.6 0.00048 1E-08 51.6 8.0 24 9-32 205-228 (407)
446 PRK03839 putative kinase; Prov 97.6 6.8E-05 1.5E-09 50.6 3.3 23 11-33 1-23 (180)
447 PF13521 AAA_28: AAA domain; P 97.6 4.7E-05 1E-09 50.6 2.4 22 12-33 1-22 (163)
448 PF00005 ABC_tran: ABC transpo 97.6 6.2E-05 1.3E-09 48.4 2.9 24 11-34 12-35 (137)
449 COG1419 FlhF Flagellar GTP-bin 97.6 0.00042 9.1E-09 52.0 7.5 112 10-127 203-350 (407)
450 KOG1533 Predicted GTPase [Gene 97.6 5.7E-05 1.2E-09 52.3 2.6 69 58-128 96-176 (290)
451 COG1136 SalX ABC-type antimicr 97.6 7E-05 1.5E-09 52.0 3.1 22 12-33 33-54 (226)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0032 6.9E-08 40.9 10.6 24 11-34 27-50 (144)
453 PRK08727 hypothetical protein; 97.5 0.0014 3E-08 46.3 9.3 21 13-33 44-64 (233)
454 PRK10646 ADP-binding protein; 97.5 0.0013 2.9E-08 43.0 8.4 23 12-34 30-52 (153)
455 PF00004 AAA: ATPase family as 97.5 0.00011 2.4E-09 46.7 3.3 21 13-33 1-21 (132)
456 PRK14532 adenylate kinase; Pro 97.5 0.00011 2.3E-09 50.0 3.3 22 11-32 1-22 (188)
457 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 51.2 3.4 22 11-32 4-25 (215)
458 COG1120 FepC ABC-type cobalami 97.5 9.6E-05 2.1E-09 52.4 3.0 21 12-32 30-50 (258)
459 PF13238 AAA_18: AAA domain; P 97.5 0.00011 2.3E-09 46.5 3.0 21 13-33 1-21 (129)
460 PRK01889 GTPase RsgA; Reviewed 97.5 0.00016 3.6E-09 54.1 4.2 24 11-34 196-219 (356)
461 PF02367 UPF0079: Uncharacteri 97.5 0.00047 1E-08 43.4 5.6 25 10-34 15-39 (123)
462 smart00382 AAA ATPases associa 97.5 0.00014 3E-09 46.4 3.3 26 11-36 3-28 (148)
463 PRK10078 ribose 1,5-bisphospho 97.5 0.00013 2.9E-09 49.5 3.3 22 12-33 4-25 (186)
464 TIGR02322 phosphon_PhnN phosph 97.5 0.00013 2.8E-09 49.2 3.2 22 12-33 3-24 (179)
465 PRK13949 shikimate kinase; Pro 97.4 0.00015 3.2E-09 48.5 3.4 21 12-32 3-23 (169)
466 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.3E-09 49.1 3.4 24 10-33 2-25 (183)
467 cd01131 PilT Pilus retraction 97.4 0.0011 2.3E-08 45.6 7.5 22 13-34 4-25 (198)
468 COG0802 Predicted ATPase or ki 97.4 0.0012 2.6E-08 42.7 7.1 26 10-35 25-50 (149)
469 cd03110 Fer4_NifH_child This p 97.4 0.0019 4.1E-08 43.5 8.5 86 57-151 91-176 (179)
470 PRK04195 replication factor C 97.4 0.0043 9.4E-08 48.5 11.5 24 10-33 39-62 (482)
471 PRK00625 shikimate kinase; Pro 97.4 0.00017 3.7E-09 48.4 3.4 22 11-32 1-22 (173)
472 PF03215 Rad17: Rad17 cell cyc 97.4 0.002 4.3E-08 50.6 9.6 55 117-171 167-229 (519)
473 COG0541 Ffh Signal recognition 97.4 0.00012 2.5E-09 55.2 2.7 94 7-100 97-230 (451)
474 COG3840 ThiQ ABC-type thiamine 97.4 0.00017 3.6E-09 48.3 3.2 23 11-33 26-48 (231)
475 KOG0744 AAA+-type ATPase [Post 97.4 0.00098 2.1E-08 48.6 7.2 23 12-34 179-201 (423)
476 cd02036 MinD Bacterial cell di 97.4 0.0063 1.4E-07 40.7 11.0 84 60-150 64-147 (179)
477 KOG3347 Predicted nucleotide k 97.4 0.00014 3.1E-09 46.9 2.7 25 8-32 5-29 (176)
478 PF03205 MobB: Molybdopterin g 97.4 0.00018 3.9E-09 46.6 3.2 22 12-33 2-23 (140)
479 cd03238 ABC_UvrA The excision 97.4 0.00018 3.8E-09 48.4 3.3 22 10-31 21-42 (176)
480 PRK02496 adk adenylate kinase; 97.4 0.0002 4.3E-09 48.6 3.5 22 11-32 2-23 (184)
481 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00018 3.8E-09 44.1 2.9 22 10-31 15-36 (107)
482 cd01130 VirB11-like_ATPase Typ 97.4 0.00019 4.2E-09 48.7 3.4 24 10-33 25-48 (186)
483 PRK05416 glmZ(sRNA)-inactivati 97.4 0.0053 1.1E-07 44.7 10.8 87 11-126 7-95 (288)
484 TIGR03263 guanyl_kin guanylate 97.4 0.00017 3.8E-09 48.6 3.1 22 12-33 3-24 (180)
485 PRK05480 uridine/cytidine kina 97.4 0.00027 5.9E-09 48.9 4.1 26 8-33 4-29 (209)
486 COG1936 Predicted nucleotide k 97.4 0.00017 3.8E-09 47.6 2.9 21 11-31 1-21 (180)
487 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00018 3.8E-09 48.8 3.1 22 11-32 4-25 (188)
488 PTZ00088 adenylate kinase 1; P 97.4 0.0002 4.3E-09 50.3 3.4 23 10-32 6-28 (229)
489 PRK13833 conjugal transfer pro 97.4 0.0013 2.8E-08 48.5 7.7 24 10-33 144-167 (323)
490 PLN02200 adenylate kinase fami 97.4 0.00031 6.6E-09 49.5 4.2 24 9-32 42-65 (234)
491 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0022 4.7E-08 49.9 9.0 87 85-173 196-285 (634)
492 COG3839 MalK ABC-type sugar tr 97.3 0.00017 3.8E-09 53.1 3.0 22 13-34 32-53 (338)
493 cd01428 ADK Adenylate kinase ( 97.3 0.00018 4E-09 49.0 3.0 22 12-33 1-22 (194)
494 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.0002 4.4E-09 49.8 3.3 22 12-33 32-53 (218)
495 cd02023 UMPK Uridine monophosp 97.3 0.0002 4.4E-09 49.1 3.2 21 13-33 2-22 (198)
496 smart00072 GuKc Guanylate kina 97.3 0.0002 4.3E-09 48.6 3.0 23 12-34 4-26 (184)
497 COG3638 ABC-type phosphate/pho 97.3 0.0002 4.3E-09 49.8 3.0 21 12-32 32-52 (258)
498 PF04665 Pox_A32: Poxvirus A32 97.3 0.00024 5.2E-09 50.0 3.4 26 8-33 11-36 (241)
499 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.0002 4.4E-09 50.6 3.0 21 12-32 32-52 (254)
500 COG1117 PstB ABC-type phosphat 97.3 0.0002 4.4E-09 49.1 2.8 22 10-31 33-54 (253)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-43 Score=231.42 Aligned_cols=170 Identities=44% Similarity=0.716 Sum_probs=163.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
+.-++.+||+++|.+|+|||+|+.+|..+.|.+.+..|.+.+...+.+.++++.+++++|||+|+++|+.....|+++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNEL 163 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 163 (178)
++|+|||+++.+||.++..|+.++.++...+.|.++|+||+|+.+.+.+..++++.|+..++++ ++++||+++.+++++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhcccc
Q 030364 164 FYEIGDCTECF 174 (178)
Q Consensus 164 ~~~l~~~i~~~ 174 (178)
|..|...+.+.
T Consensus 164 F~~la~~lk~~ 174 (205)
T KOG0084|consen 164 FLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHh
Confidence 99998877654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-41 Score=221.64 Aligned_cols=169 Identities=60% Similarity=0.962 Sum_probs=161.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+||+++|..++|||||+-++..+.|.+...+|.+..+....+.+++..++|.||||.|+++|+.+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45899999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||+++.+||..++.|++++.+...+++-+.++|||+|+.+.+++..+++..+++..++.|+++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred Hhhcccccc
Q 030364 168 GDCTECFSL 176 (178)
Q Consensus 168 ~~~i~~~~~ 176 (178)
.+.+-..+.
T Consensus 163 a~~lp~~~~ 171 (200)
T KOG0092|consen 163 AEKLPCSDP 171 (200)
T ss_pred HHhccCccc
Confidence 998876543
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-41 Score=222.05 Aligned_cols=168 Identities=42% Similarity=0.721 Sum_probs=162.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..+..+||+++|.++||||+++.+|..+.+...+..|.+.++..+.+..++..+.+++|||.|+++|+.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|||+++..||+++..|++.+..+..+++|.++||||+|+...+++..+.++.++.++|+++++|||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
.|.+.+..
T Consensus 168 ~La~~i~~ 175 (207)
T KOG0078|consen 168 SLARDILQ 175 (207)
T ss_pred HHHHHHHh
Confidence 99998873
No 4
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=9.7e-40 Score=221.41 Aligned_cols=167 Identities=30% Similarity=0.546 Sum_probs=153.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999999988887888888888778888899999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++|+.+..|+..+.... ++.|++||+||+|+...+.+..++++.+++.+++++++|||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997763 68999999999999887888889999999999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|++.+...
T Consensus 162 l~~~i~~~ 169 (189)
T cd04121 162 LARIVLMR 169 (189)
T ss_pred HHHHHHHh
Confidence 99877543
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.5e-39 Score=222.39 Aligned_cols=162 Identities=36% Similarity=0.693 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+.|+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888888899999999999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|++++++|+.+..|+..+.....++.|+++|+||+|+...+++...++..+++.. ++.|++|||++|.|++++|.+|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776678999999999999887888888888898875 789999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+.
T Consensus 161 ~~~ 163 (202)
T cd04120 161 DIL 163 (202)
T ss_pred HHH
Confidence 764
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=211.70 Aligned_cols=171 Identities=43% Similarity=0.727 Sum_probs=160.4
Q ss_pred cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
....-+..|++++|..++|||||++++..+.+...|.+|.|.+...+.+.+.+..+.+++|||.|+++|+.+.+.|++++
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds 95 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 95 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
.++|+|||+++..||++...|++.+...... ++-+++|+||.|+.+.+++..+++...++++++.|+++||+.|.||++
T Consensus 96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 9999999999999999999999999887665 588889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 030364 163 LFYEIGDCTECF 174 (178)
Q Consensus 163 ~~~~l~~~i~~~ 174 (178)
+|..|...+...
T Consensus 176 lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 176 LFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHhccCc
Confidence 999988776544
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-40 Score=211.99 Aligned_cols=165 Identities=42% Similarity=0.766 Sum_probs=158.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+|++++|..|+|||+|+.+++.+.|.+.+..|.+.++-...+.++++.+++++||+.|++.|++....|++.+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++.+++|..+..|+..+.++..++..+++++||+|+...+++..++.+.|++++++.++++||++++|++|.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999987
Q ss_pred HHhhc
Q 030364 167 IGDCT 171 (178)
Q Consensus 167 l~~~i 171 (178)
....|
T Consensus 163 ta~~I 167 (216)
T KOG0098|consen 163 TAKEI 167 (216)
T ss_pred HHHHH
Confidence 76654
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-39 Score=204.90 Aligned_cols=169 Identities=42% Similarity=0.717 Sum_probs=159.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
+.....+||+++|.+|+|||||+.+|..+.+.+....+.+.+...+.+.+++..+++.+|||.|+++|+.+.+.|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 44456899999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
++|+|||++.+++|..+..|.+++..++ .+++..++|+||.|....+.+..++...|++.+++-|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999998876 467778999999999888999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 030364 164 FYEIGDCTEC 173 (178)
Q Consensus 164 ~~~l~~~i~~ 173 (178)
|+.|+.+|-+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 9
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.6e-38 Score=209.74 Aligned_cols=163 Identities=42% Similarity=0.746 Sum_probs=150.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888888888777788888899999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
||++++++++.+..|+..+.....++.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776678999999999999888888888899999999999999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+-
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 763
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.7e-38 Score=212.20 Aligned_cols=162 Identities=29% Similarity=0.525 Sum_probs=146.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
++..+||+++|.+|+|||||++++..+.+.+.+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 467899999999999999999999999998888999886654 5677889999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEE
Q 030364 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLET 152 (178)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 152 (178)
++|||+++++||+++ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++..+++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999988764 6799999999999854 346888999999999996 99999
Q ss_pred eCCCCCC-HHHHHHHHHhh
Q 030364 153 SAKSAHN-VNELFYEIGDC 170 (178)
Q Consensus 153 Sa~~~~~-i~~~~~~l~~~ 170 (178)
||++|.| |+++|..+++.
T Consensus 160 SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 160 SALQSENSVRDIFHVATLA 178 (182)
T ss_pred CcCCCCCCHHHHHHHHHHH
Confidence 9999998 99999998874
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=8.4e-39 Score=206.40 Aligned_cols=168 Identities=37% Similarity=0.684 Sum_probs=155.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.+...+||+++|.+|+|||||++++..++|...+..+.+.+...+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCC
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEK--RKVKNEEGELYAQENG-LSFLETSAKSAH 158 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 158 (178)
.++|||++++.||+.+..|.+++..+.. ...|+||+|||.|+.+. +.++...++.||...+ +|||++||+...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999877654 46899999999999763 7889999999999876 899999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
||+++|..+.+...+
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999886553
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.2e-38 Score=210.43 Aligned_cols=161 Identities=32% Similarity=0.571 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+..++..+++.+||++|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888999988766 445677888999999999999999999999999999999999
Q ss_pred ECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc----------ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364 91 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR----------KVKNEEGELYAQENGL-SFLETSAKSAH 158 (178)
Q Consensus 91 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (178)
|+++++||+++ ..|+..+.... ++.|+++|+||+|+.+.+ .+..+++..+++..++ +|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987764 579999999999996542 4778899999999997 69999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
||+++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987644
No 13
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.9e-37 Score=206.17 Aligned_cols=160 Identities=38% Similarity=0.697 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888899888887788888888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++++|+.+..|+..+......+.|+++|+||+|+...+.+..+++..+++.++++|+++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765689999999999998888888889999999999999999999999999999999875
No 14
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-38 Score=207.35 Aligned_cols=167 Identities=41% Similarity=0.717 Sum_probs=160.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
.+-++.+||+++|.+++|||-|+.++..++|.....+|.+.+.....+.++++.++.+||||.|+++|+.....|++++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+.++|||++.+.+|+++.+|+.+++.+..++.++++|+||+|+.+.+.+..+++..++...+..++++||+.+.+++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 030364 165 YEIGDCT 171 (178)
Q Consensus 165 ~~l~~~i 171 (178)
..++..|
T Consensus 169 ~~~l~~I 175 (222)
T KOG0087|consen 169 ERVLTEI 175 (222)
T ss_pred HHHHHHH
Confidence 8877655
No 15
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.9e-37 Score=206.51 Aligned_cols=164 Identities=44% Similarity=0.742 Sum_probs=150.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988889998888877788888888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|||++++++|+.+..|+..+......+.|+++|+||+|+.+...+..++...++..++++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999987777777778888888999999999999999999999999
Q ss_pred hhcc
Q 030364 169 DCTE 172 (178)
Q Consensus 169 ~~i~ 172 (178)
+.+.
T Consensus 162 ~~~~ 165 (167)
T cd01867 162 KDIK 165 (167)
T ss_pred HHHH
Confidence 8774
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.1e-37 Score=207.85 Aligned_cols=163 Identities=31% Similarity=0.529 Sum_probs=146.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999887888887555 44567788889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++++|+.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++.+++++++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888877643 46899999999999987778888889999999999999999999999999999999
Q ss_pred hhccc
Q 030364 169 DCTEC 173 (178)
Q Consensus 169 ~~i~~ 173 (178)
+.+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87653
No 17
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.8e-37 Score=205.06 Aligned_cols=162 Identities=36% Similarity=0.645 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++++...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777767777788899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|.+++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766789999999999998777777788888888889999999999999999999999886
Q ss_pred cc
Q 030364 171 TE 172 (178)
Q Consensus 171 i~ 172 (178)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 53
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.8e-37 Score=213.32 Aligned_cols=163 Identities=25% Similarity=0.463 Sum_probs=146.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|.+|+|||+|++++..+.+...+.|+.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 5789999999999999999999999999889999887664 457788999999999999999999999999999999999
Q ss_pred EEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeC
Q 030364 89 VYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSA 154 (178)
Q Consensus 89 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 154 (178)
|||++++++|+. +..|+..+.... ++.|+++|+||+|+.. .+.+..+++..+++.+++ .|++|||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999998 478999888764 6789999999999864 356888899999999998 6999999
Q ss_pred CCCC-CHHHHHHHHHhhccc
Q 030364 155 KSAH-NVNELFYEIGDCTEC 173 (178)
Q Consensus 155 ~~~~-~i~~~~~~l~~~i~~ 173 (178)
++|. |++++|..++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9997 899999999887644
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-37 Score=207.00 Aligned_cols=159 Identities=29% Similarity=0.517 Sum_probs=142.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
++||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|....+.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888888876654 5677888999999999999999999999999999999999
Q ss_pred EECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364 90 YDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAK 155 (178)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+ .+++..+++.++++.+++ +|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 78999888764 6899999999999854 245788899999999997 89999999
Q ss_pred CCCC-HHHHHHHHHhh
Q 030364 156 SAHN-VNELFYEIGDC 170 (178)
Q Consensus 156 ~~~~-i~~~~~~l~~~ 170 (178)
+|++ ++++|..+++.
T Consensus 159 ~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 159 TSEKSVRDIFHVATMA 174 (178)
T ss_pred cCCcCHHHHHHHHHHH
Confidence 9995 99999999884
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-38 Score=196.04 Aligned_cols=166 Identities=35% Similarity=0.628 Sum_probs=158.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+..+|++++|+..+|||||+.+..+..+...+-++.+.+...+.+.-..+.+++++|||.|++.|+.....++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 45779999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
++||+++.+||..++.|...+...+..+.|+++++||||+.+++.+..+..+.+++.+|+.||++||+.+.|++.+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
+..|..
T Consensus 179 v~~Ic~ 184 (193)
T KOG0093|consen 179 VDIICD 184 (193)
T ss_pred HHHHHH
Confidence 887754
No 21
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=7.3e-37 Score=204.34 Aligned_cols=163 Identities=44% Similarity=0.744 Sum_probs=149.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988877888888888778888888889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
||+++++++..+..|+..+.....++.|+++++||+|+.....+..++...+++..+++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988776578999999999999877777778888999999999999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 774
No 22
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.2e-37 Score=203.57 Aligned_cols=161 Identities=39% Similarity=0.707 Sum_probs=153.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|++++|||||++++.++.+.+.+.++.+.+.....+..++..+.+.+||++|++.+......+++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 92 ITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+++++|++.+..|+..+......+.|++|++||.|+...+++..+++..+++.++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988766799999999999988889999999999999999999999999999999999999987
Q ss_pred c
Q 030364 172 E 172 (178)
Q Consensus 172 ~ 172 (178)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.6e-37 Score=208.36 Aligned_cols=163 Identities=28% Similarity=0.464 Sum_probs=143.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||+.++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999998888899886553 4456788899999999999999999999999999999999
Q ss_pred EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEEeCC
Q 030364 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAK 155 (178)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 155 (178)
||+++++||+.+. .|+..+... .++.|+++|+||+|+.+.. .+..+++..+++.++ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 577777665 3689999999999996542 356678889999888 599999999
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 030364 156 SAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~i~~~ 174 (178)
+|.|++++|.+|++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999877553
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-36 Score=209.32 Aligned_cols=163 Identities=34% Similarity=0.653 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888999888877777887 7889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 164 (178)
||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++..+ .+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 3678999999999997667777888899999988 699999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
++|++.+..
T Consensus 161 ~~l~~~l~~ 169 (201)
T cd04107 161 RFLVKNILA 169 (201)
T ss_pred HHHHHHHHH
Confidence 999987754
No 25
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.1e-36 Score=201.17 Aligned_cols=161 Identities=43% Similarity=0.741 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|+++++++..+..|+..+.....++.|+++++||.|+.....+..++...+++..+++++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998887767899999999999998777788888888999999999999999999999999999886
Q ss_pred c
Q 030364 171 T 171 (178)
Q Consensus 171 i 171 (178)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 26
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.7e-36 Score=205.11 Aligned_cols=165 Identities=32% Similarity=0.577 Sum_probs=147.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC----------CeEEEEEEEeCCCchhhhccch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN----------EVTIKFDIWDTAGQERYHSLAP 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~d~~g~~~~~~~~~ 77 (178)
++.+||+++|++|||||||++++.++.+.+.+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 357999999999999999999999999988888888877766665553 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
.+++++|++++|||+++++++..+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987754 46789999999999987777888888999999999999999999
Q ss_pred CCCHHHHHHHHHhhcc
Q 030364 157 AHNVNELFYEIGDCTE 172 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~ 172 (178)
|.|++++|++|++.+-
T Consensus 162 ~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 162 GTNVEKAVERLLDLVM 177 (180)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998653
No 27
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.3e-38 Score=196.33 Aligned_cols=165 Identities=38% Similarity=0.639 Sum_probs=156.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
.-++.+|+|.+|+|||+|+.++..+.|...|..+.+.+...+.+.++|..++++|||+.|++.|+.+...|+++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|||+++.+||.++.+|++++... ++..|-++|+||+|.++.+.+..++++.|+...++.+|++|++..++++..|.-|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~n-cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNN-CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhc-CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 99999999999999999999987 45888999999999999999999999999999999999999999999999999988
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
++....
T Consensus 166 ~qvl~~ 171 (198)
T KOG0079|consen 166 KQVLQA 171 (198)
T ss_pred HHHHHH
Confidence 876543
No 28
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.7e-36 Score=201.39 Aligned_cols=163 Identities=44% Similarity=0.752 Sum_probs=149.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35799999999999999999999999887788898888888888888888899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998887656799999999999987777777888888888899999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 29
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.4e-36 Score=201.94 Aligned_cols=162 Identities=29% Similarity=0.632 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999998888888888888999999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQGN-----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
|++++++++.+..|+..+..... .+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999887643 5789999999999976566777788888888899999999999999999999
Q ss_pred HHHhhcc
Q 030364 166 EIGDCTE 172 (178)
Q Consensus 166 ~l~~~i~ 172 (178)
+|.+.+-
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998763
No 30
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.7e-36 Score=204.95 Aligned_cols=164 Identities=26% Similarity=0.458 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888888888998999999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-----KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
|++++++++.+..|+..+........| ++|+||+|+.. ......++...+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876545566 67899999842 111224566778888899999999999999999999
Q ss_pred HHHhhccccc
Q 030364 166 EIGDCTECFS 175 (178)
Q Consensus 166 ~l~~~i~~~~ 175 (178)
+|.+.+-...
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9998776543
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.9e-36 Score=206.81 Aligned_cols=167 Identities=38% Similarity=0.647 Sum_probs=150.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999988778888888887778888888889999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++++++.+..|+..+... .+..|++||+||+|+.....+..++...+++..+++++++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 999999999999999999988765 3678999999999998777777788888888889999999999999999999999
Q ss_pred Hhhccccc
Q 030364 168 GDCTECFS 175 (178)
Q Consensus 168 ~~~i~~~~ 175 (178)
.+.+...+
T Consensus 163 ~~~~~~~~ 170 (199)
T cd04110 163 TELVLRAK 170 (199)
T ss_pred HHHHHHhh
Confidence 99876543
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.2e-36 Score=200.48 Aligned_cols=163 Identities=42% Similarity=0.726 Sum_probs=147.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998888788888877777888888888899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+++.......+++..++ .++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667899999999999987777777788888888775 78999999999999999999
Q ss_pred Hhhc
Q 030364 168 GDCT 171 (178)
Q Consensus 168 ~~~i 171 (178)
.+.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 8753
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.6e-36 Score=200.98 Aligned_cols=161 Identities=35% Similarity=0.566 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999988777777766 33455667788889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++++++.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 46899999999999977666777777788888889999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.8e-36 Score=207.95 Aligned_cols=164 Identities=35% Similarity=0.536 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999888887777754 578999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877532 35689999999999877788888889999999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99987654
No 35
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.9e-36 Score=203.40 Aligned_cols=163 Identities=39% Similarity=0.651 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++++++.+..|+..+......+.|+++++||+|+.+...+..+....+++..+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998777777888888888889999999999999999999999987
Q ss_pred ccc
Q 030364 171 TEC 173 (178)
Q Consensus 171 i~~ 173 (178)
+..
T Consensus 161 ~~~ 163 (188)
T cd04125 161 IIK 163 (188)
T ss_pred HHH
Confidence 754
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.9e-36 Score=200.46 Aligned_cols=162 Identities=35% Similarity=0.595 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888777777776554 35567788889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||.+++.+++.+..|+..+.... ..+.|+++|+||+|+.....+...+...+++.++++++++||++|.|++++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 46899999999999987766777777788888899999999999999999999999
Q ss_pred hhcc
Q 030364 169 DCTE 172 (178)
Q Consensus 169 ~~i~ 172 (178)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 37
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=7.9e-36 Score=206.82 Aligned_cols=167 Identities=41% Similarity=0.708 Sum_probs=153.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34679999999999999999999999998877889999888888888899899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..+....++..++++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888888999889999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|++.+.+
T Consensus 169 l~~~i~~ 175 (216)
T PLN03110 169 ILLEIYH 175 (216)
T ss_pred HHHHHHH
Confidence 9987754
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.1e-35 Score=199.10 Aligned_cols=163 Identities=42% Similarity=0.767 Sum_probs=149.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|.+|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998888788888888888888888888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|||++++++++.+..|+..+.....++.|+++|+||.|+.....+..++...++...+++++++||+++.|++++|.+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887668899999999999987677777888888888999999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+.+
T Consensus 163 ~~~ 165 (168)
T cd01866 163 KEI 165 (168)
T ss_pred HHH
Confidence 875
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.5e-36 Score=201.49 Aligned_cols=158 Identities=28% Similarity=0.489 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999999999999999999999998888898876664 34567888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKS 156 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (178)
|++++++|+.+. .|+..+... .++.|+++|+||+|+... +.+..+++..+++..+ +.|++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 587777665 367999999999998543 4567778888888877 7999999999
Q ss_pred CCCHHHHHHHHHhh
Q 030364 157 AHNVNELFYEIGDC 170 (178)
Q Consensus 157 ~~~i~~~~~~l~~~ 170 (178)
|.|++++|+.+++.
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=203.37 Aligned_cols=165 Identities=37% Similarity=0.576 Sum_probs=146.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999988877878777655 456678888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|||++++++++.+..|+..+.... .++.|+++|+||+|+.+...+...+...+++.++++++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998887653 458899999999999777777777788888888899999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|++.+..
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9987654
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.3e-35 Score=197.42 Aligned_cols=159 Identities=35% Similarity=0.637 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC--CeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+||+++|.+|+|||||++++.++.+.+.+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888777777776 778899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|||++++++++.+..|+..+... ..+.|+++|+||+|+.....+..++...+++..+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999888654 46899999999999987777777888889999999999999999999999999998
Q ss_pred hh
Q 030364 169 DC 170 (178)
Q Consensus 169 ~~ 170 (178)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 65
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.7e-35 Score=198.30 Aligned_cols=163 Identities=33% Similarity=0.621 Sum_probs=144.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|.+|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||+||++.|...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899999988887888888888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccc--cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
++++++++.+..|+..+.+... .+.|+++|+||+|+..... ...++...+++.++++++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998866533 4578899999999865433 345566778888889999999999999999999999
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
+.+..+
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 887543
No 43
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-36 Score=190.56 Aligned_cols=165 Identities=41% Similarity=0.701 Sum_probs=157.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
-+.-+|++++|+.|.|||+|+.++..+++......+.+.+.-.+.+.+.++.+++++||+.|+++|+.....|++++.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++|+.+..|+...+....+++-+++++||.|+.+++++...++..|+++..+.+.++|+++|+|++|.|-.
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999987
Q ss_pred HHhhc
Q 030364 167 IGDCT 171 (178)
Q Consensus 167 l~~~i 171 (178)
..+.|
T Consensus 166 c~~tI 170 (214)
T KOG0086|consen 166 CARTI 170 (214)
T ss_pred HHHHH
Confidence 76654
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-35 Score=202.46 Aligned_cols=164 Identities=40% Similarity=0.713 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+||+++|++|+|||||++++..+.+.. .+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5677777777777778888899999999999999999889999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
||++++++++++..|+..+......+.|+++|+||+|+...+.+..++...+++.++++|+++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988876668999999999999776677777888888888999999999999999999999998
Q ss_pred hcccc
Q 030364 170 CTECF 174 (178)
Q Consensus 170 ~i~~~ 174 (178)
.+...
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 77654
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.3e-35 Score=206.03 Aligned_cols=163 Identities=33% Similarity=0.520 Sum_probs=145.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56899999999999999999999999998889999998888777777888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++++++.+..|+..+... .++.|+++|+||+|+.. ..+..+.. .+++..+++|++|||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999999999999876 46899999999999864 33333444 6777788999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
++.+..
T Consensus 168 ~~~~~~ 173 (219)
T PLN03071 168 ARKLAG 173 (219)
T ss_pred HHHHHc
Confidence 988754
No 46
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.8e-35 Score=197.55 Aligned_cols=160 Identities=35% Similarity=0.581 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888887777777888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++++++.+..|+..+..... +.|+++|+||+|+.. ..+. .+...+++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987744 899999999999873 3333 34456777788999999999999999999999988
Q ss_pred ccc
Q 030364 171 TEC 173 (178)
Q Consensus 171 i~~ 173 (178)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 764
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-35 Score=204.23 Aligned_cols=163 Identities=37% Similarity=0.717 Sum_probs=146.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+.+ ++..+.+++||++|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988878888888877777766 4667899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++++++.+..|+..+..... ...|+++|+||+|+.....+..++...+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 457789999999998877788888899999999999999999999999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
.+.+.
T Consensus 162 ~~~~~ 166 (211)
T cd04111 162 TQEIY 166 (211)
T ss_pred HHHHH
Confidence 98764
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=7.6e-36 Score=203.43 Aligned_cols=162 Identities=33% Similarity=0.541 Sum_probs=142.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988877777776554 3455678888899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
++++++++.+..|+..+.... .++.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998886643 35789999999999987777777778888888899999999999999999999999
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
+.+...
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 877543
No 49
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.8e-35 Score=196.75 Aligned_cols=164 Identities=35% Similarity=0.598 Sum_probs=145.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
+...+||+++|++|+|||||++++.++.+.+.+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999998887888888777777788889999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVN 161 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 161 (178)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++...+++.++ ++++++||++|.|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999988876643 2578999999999986 45566778888888887 589999999999999
Q ss_pred HHHHHHHhhc
Q 030364 162 ELFYEIGDCT 171 (178)
Q Consensus 162 ~~~~~l~~~i 171 (178)
++|+++++.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 50
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.5e-35 Score=197.35 Aligned_cols=161 Identities=36% Similarity=0.585 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
++||+++|.+|+|||||++++..+.+.+.+.++.+ ......+..++..+.+.+||+||.+.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999998877777665 34456677788888999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++++++++..|+..+.... ..+.|+++|+||+|+.....+...+...+++..+++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 36899999999999976666666677888888889999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 51
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.5e-35 Score=195.69 Aligned_cols=162 Identities=48% Similarity=0.832 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++.+++.+..|+..+.....++.|+++++||+|+....++..+....+++..+++++++|+++|.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888766789999999999988767777778888888899999999999999999999999987
Q ss_pred cc
Q 030364 171 TE 172 (178)
Q Consensus 171 i~ 172 (178)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 64
No 52
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=202.35 Aligned_cols=165 Identities=40% Similarity=0.746 Sum_probs=150.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999888878888888887778888888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++++++.+..|+..+.....++.|+++++||+|+.+.+.+..++...+++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666789999999999998877788888899999999999999999999999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
++.+-
T Consensus 164 ~~~~~ 168 (210)
T PLN03108 164 AAKIY 168 (210)
T ss_pred HHHHH
Confidence 88764
No 53
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=4.6e-35 Score=194.67 Aligned_cols=161 Identities=45% Similarity=0.771 Sum_probs=146.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
.||+++|++|+|||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988878888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++++++.+..|+..+......+.|+++++||+|+........++...+++..+++++++||+++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998877655579999999999997666777777888888888999999999999999999999875
Q ss_pred c
Q 030364 171 T 171 (178)
Q Consensus 171 i 171 (178)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 54
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6.6e-35 Score=194.26 Aligned_cols=162 Identities=68% Similarity=1.024 Sum_probs=148.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
++||+++|++|+|||||+++++++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998877888888888788888999899999999999999998899999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
+|++++++++....|+..+.....++.|+++++||+|+.........+...++...+++++++||++|.|++++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999998866667777888888888999999999999999999999998
Q ss_pred hc
Q 030364 170 CT 171 (178)
Q Consensus 170 ~i 171 (178)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 55
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.4e-35 Score=197.44 Aligned_cols=159 Identities=28% Similarity=0.512 Sum_probs=138.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||+.++..+.+...+.++....+ ...+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 36999999999999999999999999888888876443 44556788889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK 155 (178)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
||++++++|+++. .|+..+... .++.|+++|+||+|+.+. ..+..+++..+++.++. ++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999986 577777655 468999999999998542 24677888999998884 99999999
Q ss_pred CCCCHHHHHHHHHhh
Q 030364 156 SAHNVNELFYEIGDC 170 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (178)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.2e-35 Score=196.21 Aligned_cols=159 Identities=36% Similarity=0.504 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999998777777766444 444566777899999999999999988888999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|++++++++.+..|+..+.... .++.|+++|+||+|+...+++...++..++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776643 3679999999999997767777777888888889999999999999999999999
Q ss_pred Hhh
Q 030364 168 GDC 170 (178)
Q Consensus 168 ~~~ 170 (178)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 853
No 57
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6.1e-35 Score=194.13 Aligned_cols=161 Identities=32% Similarity=0.548 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+.+.+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777776667778888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++.+++.+..|+..+... .++.|+++|+||+|+... ...+...+++..+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999988765 457899999999998532 1234556677778999999999999999999999988
Q ss_pred ccccc
Q 030364 171 TECFS 175 (178)
Q Consensus 171 i~~~~ 175 (178)
+.+++
T Consensus 157 ~~~~~ 161 (161)
T cd04124 157 AVSYK 161 (161)
T ss_pred HHhcC
Confidence 76653
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.2e-35 Score=194.89 Aligned_cols=162 Identities=33% Similarity=0.521 Sum_probs=141.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999999888777777766444 4445678888899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++...+++..+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998887643 4678999999999998777677777888888888999999999999999999999
Q ss_pred Hhhc
Q 030364 168 GDCT 171 (178)
Q Consensus 168 ~~~i 171 (178)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3.4e-35 Score=195.90 Aligned_cols=161 Identities=39% Similarity=0.606 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|||||||++++.++.+...+.++.+.. .......++..+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998877777766533 3455667788899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+....+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876643 357899999999999876667777788888888999999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.6e-35 Score=202.92 Aligned_cols=158 Identities=39% Similarity=0.618 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+.. +.++.+.++..... ..+.+.+||++|++.|..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998865 56666655443322 4578999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------------------ccccCHHHHHHHHHHcC-----
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQENG----- 146 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 146 (178)
|++++++|+.+..|+..+.....++.|+++|+||+|+.+ .+++..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888776567899999999999865 57788889999998876
Q ss_pred ---------CeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 147 ---------LSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
++|++|||++|.||+++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 61
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=9.3e-35 Score=194.88 Aligned_cols=163 Identities=35% Similarity=0.638 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-ccchhhhcCCcEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVV 88 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~~i~ 88 (178)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||++|++.+. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999999888788888888888888889988999999999998886 567888999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC---CCCHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF 164 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 164 (178)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++..+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887754 46799999999999988888888888889998999999999999 89999999
Q ss_pred HHHHhhcc
Q 030364 165 YEIGDCTE 172 (178)
Q Consensus 165 ~~l~~~i~ 172 (178)
..|++.++
T Consensus 162 ~~l~~~~~ 169 (170)
T cd04115 162 MTLAHKLK 169 (170)
T ss_pred HHHHHHhh
Confidence 99998764
No 62
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.4e-35 Score=202.12 Aligned_cols=160 Identities=27% Similarity=0.507 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+|+|.+|+|||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++.+|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999889999886664 5667888999999999999999999999999999999999
Q ss_pred EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK 155 (178)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
||++++++|+.+. .|...+.. ..++.|+++|+||+|+... ..+..+++..+++..++ +|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 56555544 3578999999999998542 23677889999999995 99999999
Q ss_pred CCCC-HHHHHHHHHhhc
Q 030364 156 SAHN-VNELFYEIGDCT 171 (178)
Q Consensus 156 ~~~~-i~~~~~~l~~~i 171 (178)
++.+ |+++|...+...
T Consensus 159 ~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 159 SSERSVRDVFHVATVAS 175 (222)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9985 999999988754
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.5e-35 Score=193.94 Aligned_cols=160 Identities=33% Similarity=0.557 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 36899999999999999999999988777777776544 45567788888899999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ......+...+++..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887654 36889999999999876 44556677778888899999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 765
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.9e-35 Score=198.87 Aligned_cols=163 Identities=34% Similarity=0.547 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
.||+++|++|+|||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 48999999999999999999999998878888776653 44566788899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKS 156 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (178)
|++++++|+.+. .|+..+... .++.|+++|+||+|+.... .+..++...+++..+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 588887765 4689999999999986543 245566777777776 7999999999
Q ss_pred CCCHHHHHHHHHhhccccc
Q 030364 157 AHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~~~~ 175 (178)
|.|++++|.+|++.+...+
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999998876543
No 65
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=190.64 Aligned_cols=165 Identities=39% Similarity=0.719 Sum_probs=151.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+++++|+|.+-+|||+|++.++.+++.+...||.+.+.....+.+ ++..+++++|||.|+++|++....|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35789999999999999999999999999999999999988887766 78899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
++|||+++++||+.+..|..+...+.. |+.+ +.+|++|+|+...+++..++++.++..++..|++||+++|.|+++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998776544 6555 46779999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 030364 165 YEIGDCTE 172 (178)
Q Consensus 165 ~~l~~~i~ 172 (178)
.-|.+.+-
T Consensus 166 ~mlaqeIf 173 (213)
T KOG0091|consen 166 DMLAQEIF 173 (213)
T ss_pred HHHHHHHH
Confidence 98888654
No 66
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-36 Score=187.26 Aligned_cols=166 Identities=41% Similarity=0.713 Sum_probs=156.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
+-+..+||+++|+.|+|||+|+++++.+-|++....+.+.+...+.+.+++..+++++||+.|+++|++....|++++++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+|++||++...+|+.+..|+.++..+....+--++|+||.|+.+.+++....+++|++....-|.++||+..++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999887888899999999999999999999999999889999999999999999999
Q ss_pred HHHhhc
Q 030364 166 EIGDCT 171 (178)
Q Consensus 166 ~l~~~i 171 (178)
.+.-++
T Consensus 163 ~~a~rl 168 (213)
T KOG0095|consen 163 DLACRL 168 (213)
T ss_pred HHHHHH
Confidence 876543
No 67
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=190.47 Aligned_cols=167 Identities=43% Similarity=0.724 Sum_probs=158.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.+...+|++++|..-+|||||+-++..++|...+.++....+..+.+.+.+....+.||||.|+++|..+-+.|+++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34568999999999999999999999999999899998888888888999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
.++|||++|++||+.++.|..++........-+++|+||.|+++++.+...++..+++..|+.|+++||+.+.||.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 030364 166 EIGDCTE 172 (178)
Q Consensus 166 ~l~~~i~ 172 (178)
.|.+.+-
T Consensus 169 ~Lt~~Mi 175 (218)
T KOG0088|consen 169 SLTAKMI 175 (218)
T ss_pred HHHHHHH
Confidence 9987654
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.6e-34 Score=197.53 Aligned_cols=164 Identities=26% Similarity=0.296 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhcC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRG 82 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 82 (178)
+||+|+|.+|||||||++++.++.+...+.|+.+.+.....+.+++..+.+.+||+||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999887888887666666677888889999999999654321 13345789
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH 158 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (178)
+|++++|||++++++++.+..|+..+.... .++.|+++|+||+|+...+.+..++...++. .++++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887753 4689999999999997766666666666654 568999999999999
Q ss_pred CHHHHHHHHHhhcccc
Q 030364 159 NVNELFYEIGDCTECF 174 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~~ 174 (178)
|++++|+.+++.+...
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999876543
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4e-34 Score=190.71 Aligned_cols=160 Identities=29% Similarity=0.509 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+||+++|.+|||||||++++..+ .+...+.++.+.++.......+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777788888888766666664 56799999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+..++.......+....+++++++||++|.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998888764 678999999999997777777666677777788999999999999999999999
Q ss_pred Hhhc
Q 030364 168 GDCT 171 (178)
Q Consensus 168 ~~~i 171 (178)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8864
No 70
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.6e-34 Score=189.43 Aligned_cols=161 Identities=47% Similarity=0.801 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887767777777776777777788889999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
|++++++++.+..|+..+......+.|+++++||+|+.....+..++...+.+..+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999998766777777778888889999999999999999999999886
Q ss_pred c
Q 030364 171 T 171 (178)
Q Consensus 171 i 171 (178)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 71
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.3e-34 Score=196.54 Aligned_cols=155 Identities=32% Similarity=0.560 Sum_probs=138.8
Q ss_pred EcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH
Q 030364 16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 95 (178)
Q Consensus 16 ~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (178)
+|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888889998888888888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 96 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.+++.+..|+..+.... ++.|+++|+||+|+.. +.+..+ ...+++..+++|++|||++|.||+++|.+|++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998763 6899999999999854 334433 346778889999999999999999999999987754
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.1e-34 Score=195.11 Aligned_cols=162 Identities=31% Similarity=0.519 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+||+++|++|+|||||++++.++.+...+.++.+..+... +... +..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888877666443 4444 7788999999999999999999999999999999
Q ss_pred EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc----cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Q 030364 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL 163 (178)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 163 (178)
||++++++|+++. .|+..+... .++.|+++|+||+|+... +.+...+...++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 477666554 468999999999998653 24567788888988888 9999999999999999
Q ss_pred HHHHHhhcccc
Q 030364 164 FYEIGDCTECF 174 (178)
Q Consensus 164 ~~~l~~~i~~~ 174 (178)
|..+++.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 73
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-33 Score=188.95 Aligned_cols=165 Identities=40% Similarity=0.703 Sum_probs=146.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
....++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999998888777778887777777788888888999999999999999889999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+......+.|+++++||+|+...+++.......+.+....+++++||++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998888776668999999999999877777777677777777799999999999999999999
Q ss_pred HHhhc
Q 030364 167 IGDCT 171 (178)
Q Consensus 167 l~~~i 171 (178)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 74
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=5.1e-34 Score=194.45 Aligned_cols=158 Identities=25% Similarity=0.410 Sum_probs=129.5
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhCc-----CCCCccCceee-eEEEEE--------EEeCCeEEEEEEEeCCCchhhhc
Q 030364 10 QVKLVLLGDMGTGKTSLVL-RFVKGQ-----FFDFQESTIGA-AFFTQV--------LSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
.+||+++|.+|+|||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555443 44556777752 222211 25688899999999999875 3
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc-------------------ccccC
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVK 134 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~ 134 (178)
....+++++|++++|||+++++||+.+. .|+..+.... ++.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5888887653 5789999999999864 36788
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 135 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
.+++..+++.++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999874
No 75
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.8e-34 Score=188.54 Aligned_cols=154 Identities=20% Similarity=0.375 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++..+.+.+.+.++ ...+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988887665544 3333 45678888889999999999864 34678899999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|.++++||+++..|+..+..... ++.|+++|+||.|+. ..+++..+++..+++.. +++|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999887653 678999999999985 35677778888888776 589999999999999999999
Q ss_pred HHhhc
Q 030364 167 IGDCT 171 (178)
Q Consensus 167 l~~~i 171 (178)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.7e-33 Score=187.13 Aligned_cols=160 Identities=41% Similarity=0.731 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887778888888877777778888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|++++++++.+..|+..+.... .++.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999998887764 46899999999999873 445567788888889999999999999999999999987
Q ss_pred hc
Q 030364 170 CT 171 (178)
Q Consensus 170 ~i 171 (178)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 63
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.4e-33 Score=192.82 Aligned_cols=161 Identities=43% Similarity=0.694 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+||+++|.+|+|||||++++.++.+.. .+.++.+..+....+..++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 5778888878778888899999999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
||++++++++.+..|+..+... .++.|+++|+||+|+... ..+...+...++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999888765 357899999999998532 34445567778888889999999999999999999
Q ss_pred HHHhhcc
Q 030364 166 EIGDCTE 172 (178)
Q Consensus 166 ~l~~~i~ 172 (178)
+|.+.+.
T Consensus 160 ~i~~~~~ 166 (193)
T cd04118 160 KVAEDFV 166 (193)
T ss_pred HHHHHHH
Confidence 9998764
No 78
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.1e-33 Score=189.38 Aligned_cols=162 Identities=31% Similarity=0.536 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47899999999999999999999998777777776443 56667788889999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l 167 (178)
||++++++++.+..|...+.... ..+.|+++++||.|+...+.+..++...+++.++ ++++++||++|.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887643 4689999999999998777777777778888887 899999999999999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
+.++-
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 97653
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=7.9e-34 Score=199.68 Aligned_cols=161 Identities=25% Similarity=0.426 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777776 455567788888999999999999999888888899999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCH
Q 030364 91 DITSMDSFERAKKWVQELQRQ---------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV 160 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 160 (178)
|++++++|+.+..|+..+... ...+.|+++|+||+|+...+++..++...++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 235799999999999976666777777766653 4689999999999999
Q ss_pred HHHHHHHHhhcc
Q 030364 161 NELFYEIGDCTE 172 (178)
Q Consensus 161 ~~~~~~l~~~i~ 172 (178)
+++|++|.+...
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998654
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=194.27 Aligned_cols=168 Identities=38% Similarity=0.622 Sum_probs=144.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
...+..+||+++|.+|+|||||+++|.++.+. .+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34456899999999999999999999988764 47788887777777788888899999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 85 AAVVVYDITSMDSFERAKK-WVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
++++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++..++++|+++||++|.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999876 444454432 35678999999999987777777788888888999999999999999999
Q ss_pred HHHHHHhhccc
Q 030364 163 LFYEIGDCTEC 173 (178)
Q Consensus 163 ~~~~l~~~i~~ 173 (178)
+|++|.+.+..
T Consensus 168 l~~~l~~~~~~ 178 (211)
T PLN03118 168 CFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2e-33 Score=188.67 Aligned_cols=164 Identities=41% Similarity=0.701 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777788888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 165 (178)
|++++++++.+..|...+..... .+.|+++|+||+|+..+.....+....+.+..+ ++++++|+++|.|++++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888877655432 379999999999997656666677777877777 7999999999999999999
Q ss_pred HHHhhcccc
Q 030364 166 EIGDCTECF 174 (178)
Q Consensus 166 ~l~~~i~~~ 174 (178)
+|.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999876543
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.1e-34 Score=190.42 Aligned_cols=160 Identities=31% Similarity=0.468 Sum_probs=136.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCCcEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~d~~i~v~ 90 (178)
||+++|++|+|||||++++..+.+...+.++....+ .....+++..+.+.+||+||+.. +......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888776777665444 45567788889999999999875 3445677889999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC-CCHHHHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEI 167 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l 167 (178)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++..+++|+++||++| .|++++|++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887753 457999999999999777777778888899989999999999999 5999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 83
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=2.7e-33 Score=185.25 Aligned_cols=159 Identities=51% Similarity=0.885 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998878888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|++++++++.+..|+..+........|+++++||+|+..+.....++...++...+++++++|++++.|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999988876678999999999999756667778888888888999999999999999999999864
No 84
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.4e-33 Score=189.86 Aligned_cols=158 Identities=32% Similarity=0.549 Sum_probs=137.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (178)
|+|+|.+|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999887777776554 34567788889999999999999999999999999999999999
Q ss_pred CCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364 93 TSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAH 158 (178)
Q Consensus 93 ~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (178)
+++++|+.+. .|+..+... .++.|+++|+||+|+.... .+..+++..+++..++ +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 588877765 3689999999999986522 3667778889998886 99999999999
Q ss_pred CHHHHHHHHHhhcc
Q 030364 159 NVNELFYEIGDCTE 172 (178)
Q Consensus 159 ~i~~~~~~l~~~i~ 172 (178)
|++++|+.|++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.1e-33 Score=189.38 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=139.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+.+||+++|.+|+|||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4789999999999999999999999988 778888888777777788888889999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|||++++++++.+..|+..+.. ..+.|+++|+||+|+.+.......+...+++.+++ .++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 99999999999998888876533 24789999999999965554433455667777777 4799999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998764
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=3.1e-33 Score=188.14 Aligned_cols=159 Identities=28% Similarity=0.488 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998877777765443 445677888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
|.+++++|+.+. .|+..+... .++.|+++++||+|+.+. ..+..+++..+++..++ ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 576777655 678999999999998542 25666778888888886 899999999
Q ss_pred CCCHHHHHHHHHhhc
Q 030364 157 AHNVNELFYEIGDCT 171 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i 171 (178)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=4.7e-33 Score=187.11 Aligned_cols=157 Identities=26% Similarity=0.485 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999988887777764 344456777888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
|++++++|+.+. .|+..+... .++.|+++++||+|+.. .+.+..+++..+++..+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 677777654 45799999999999853 346677788889998887 999999999
Q ss_pred CCCHHHHHHHHHh
Q 030364 157 AHNVNELFYEIGD 169 (178)
Q Consensus 157 ~~~i~~~~~~l~~ 169 (178)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.7e-33 Score=194.63 Aligned_cols=161 Identities=30% Similarity=0.374 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc-CCcEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-GAAAAVV 88 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~d~~i~ 88 (178)
+||+++|++|+|||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 55666665566677778888889999999999972 23344566 8999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887754 3689999999999998777777777888888889999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
++.+..
T Consensus 159 ~~~~~~ 164 (221)
T cd04148 159 VRQIRL 164 (221)
T ss_pred HHHHHh
Confidence 998864
No 89
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-35 Score=182.91 Aligned_cols=162 Identities=38% Similarity=0.703 Sum_probs=151.5
Q ss_pred EEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364 14 VLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (178)
Q Consensus 14 ~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (178)
+++|.+++|||+|+-++..+.|. ....++.+.++..+.+..++..+++++||+.|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888877764 45678999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.++.||++.+.|+.++..+....+.+++++||+|+...+.+..++...+++.+++|++++||++|.+++..|..|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988888889999999999888999999999999999999999999999999999999999888
Q ss_pred ccc
Q 030364 173 CFS 175 (178)
Q Consensus 173 ~~~ 175 (178)
+.+
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 765
No 90
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-35 Score=185.28 Aligned_cols=168 Identities=33% Similarity=0.555 Sum_probs=152.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe---------CCeEEEEEEEeCCCchhhhccc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---------NEVTIKFDIWDTAGQERYHSLA 76 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~d~~g~~~~~~~~ 76 (178)
+-+.-+|.+.+|.+|+||||++.+++.++|.....++.+.+...+.+.+ .+..+.+++|||.|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 3456788999999999999999999999999999999999887777655 2356889999999999999999
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
..+++.+-+++++||+++..||-+++.|+..+..+. +.+..+++++||+|+++.+.+..+++..+++.+++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999999998875 4566689999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccc
Q 030364 156 SAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~i~~ 173 (178)
+|.++++..+.|...+.+
T Consensus 165 tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMK 182 (219)
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999998888776654
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=2.6e-32 Score=181.01 Aligned_cols=159 Identities=36% Similarity=0.605 Sum_probs=140.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|++|+|||||+++++++.+...+.++.. +........++..+.+++||+||+..+...+..++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 4556666777778899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
.+++++++.+..|+..+..... ...|+++++||+|+........+....++..++++++++|++++.|+++++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877644 689999999999998767777788888888888999999999999999999999876
Q ss_pred c
Q 030364 171 T 171 (178)
Q Consensus 171 i 171 (178)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=4.7e-32 Score=180.54 Aligned_cols=161 Identities=33% Similarity=0.575 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+...+.++....+ ......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777765443 455677888899999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.........+...+++.++++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887753 368999999999999765555667777788888899999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.2e-32 Score=184.08 Aligned_cols=156 Identities=22% Similarity=0.364 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|++|+|||||++++..+.+.. +.|+.+.+.. .... ..+.+++||+||++.+...+..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 457899999999999999999998877653 5666665543 2222 4578999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----NGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++.+++.+..++..+... ..++.|+++|+||+|+.+. +..++...+.+. ..++++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877776543 2467899999999998652 344455444321 23578999999999999
Q ss_pred HHHHHHHhh
Q 030364 162 ELFYEIGDC 170 (178)
Q Consensus 162 ~~~~~l~~~ 170 (178)
++|+||.++
T Consensus 160 ~~~~~l~~~ 168 (168)
T cd04149 160 EGLTWLSSN 168 (168)
T ss_pred HHHHHHhcC
Confidence 999999753
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=8.1e-32 Score=181.39 Aligned_cols=159 Identities=35% Similarity=0.566 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
.||+++|++|||||||++++.++.+...+.++.+.... ..+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999988777777765543 35577888899999999999999998888899999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
|++++++++.+. .|...+... .++.|+++|+||+|+... ..+...+...+++..+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 466666554 458999999999998542 22445667777777764 899999999
Q ss_pred CCCHHHHHHHHHhhc
Q 030364 157 AHNVNELFYEIGDCT 171 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i 171 (178)
|.|++++|++|.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=1.3e-31 Score=181.16 Aligned_cols=163 Identities=34% Similarity=0.499 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
.||+++|.+|+|||||++++..+.+...+.++..... ...+..++..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888766666665443 445566777888999999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
|.++..+++.+..|+..+.... ..+.|+++++||+|+...+.+...+...+++..+++++++||+++.|+++++.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988877653 467899999999999766666666677778888899999999999999999999998
Q ss_pred hcccc
Q 030364 170 CTECF 174 (178)
Q Consensus 170 ~i~~~ 174 (178)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87654
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.8e-32 Score=184.44 Aligned_cols=158 Identities=22% Similarity=0.351 Sum_probs=123.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|++|+|||||++++..+.+.. +.|+.+.+... ... ..+.+.+||+||++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 347999999999999999999998777643 56666655432 233 3578999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++++++....++..+... ..++.|++||+||+|+.+.. ..++..... +...+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988888777543 24678999999999986532 222222211 1123467899999999999
Q ss_pred HHHHHHHhhcc
Q 030364 162 ELFYEIGDCTE 172 (178)
Q Consensus 162 ~~~~~l~~~i~ 172 (178)
++|+||.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=8.1e-33 Score=184.34 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=126.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (178)
|+++|++|+|||||++++.++.+...+.|+.+... ..++...+.+.+||++|++.+...+..+++.+|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888777778876542 23445568899999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH----HHHHHHHHHcCCeEEEEeCCC------CCCHHH
Q 030364 93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKS------AHNVNE 162 (178)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~ 162 (178)
+++.++...+.|+..+.... ++.|+++|+||+|+...+.+.. .....+++..++++++|||++ ++|+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999988888876543 6899999999999876554322 123455666788999999888 999999
Q ss_pred HHHHHHh
Q 030364 163 LFYEIGD 169 (178)
Q Consensus 163 ~~~~l~~ 169 (178)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998864
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=2.9e-31 Score=180.43 Aligned_cols=164 Identities=31% Similarity=0.529 Sum_probs=136.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+.||+++|++|+|||||++++..+.+.+.+.++....+. ..+.+++..+.+.+||++|++.+....+.++..+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 368999999999999999999988887766666554443 3556677788899999999988887777788999999999
Q ss_pred EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc----------ccccCHHHHHHHHHHcCC-eEEEEeCCCC
Q 030364 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE----------KRKVKNEEGELYAQENGL-SFLETSAKSA 157 (178)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (178)
||++++++++.+. .|+..+..+ .++.|+++|+||+|+.. .+.+..++...+++..++ ++++|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986 587877765 45799999999999854 234455677888888885 8999999999
Q ss_pred CCHHHHHHHHHhhccccc
Q 030364 158 HNVNELFYEIGDCTECFS 175 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~~~ 175 (178)
.|++++|+++.+.+...+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998776544
No 99
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2.9e-31 Score=177.98 Aligned_cols=157 Identities=32% Similarity=0.607 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||+++|.++.+...+.++.... .......++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999999999999998866666666543 3445567788899999999999988888888889999999999
Q ss_pred ECCCHhHHHHHHH-HHHHHHHhCCCCceEEEEEeCCCCcccc-----------ccCHHHHHHHHHHcCC-eEEEEeCCCC
Q 030364 91 DITSMDSFERAKK-WVQELQRQGNPNLIMFLVANKVDLEEKR-----------KVKNEEGELYAQENGL-SFLETSAKSA 157 (178)
Q Consensus 91 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (178)
|.++++++..... |+..+... .++.|+++|+||+|+.... .+..++...++..+++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999888654 55555554 4589999999999986554 2346677778888887 9999999999
Q ss_pred CCHHHHHHHHHh
Q 030364 158 HNVNELFYEIGD 169 (178)
Q Consensus 158 ~~i~~~~~~l~~ 169 (178)
.|+++++++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999876
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=183.68 Aligned_cols=164 Identities=36% Similarity=0.582 Sum_probs=152.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
...||+++|.+|+|||+|..++..+.|...+.|+.+ +.+.+...+++..+.+.|+|++|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 5557777888999999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
||+++++.||+.+..++..+.+.. ....|+++|+||+|+...+.+..+++..++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999985533 4568999999999999989999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998876
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.1e-31 Score=182.69 Aligned_cols=160 Identities=27% Similarity=0.416 Sum_probs=133.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|.+|+|||||++++..+.+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666664 3444566777888899999999999998888889999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
++++++++.+..|+..+..... .+.|+++|+||+|+.. ...+.......... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877543 5799999999999865 34444444443333 4567999999999999999999999
Q ss_pred hhcc
Q 030364 169 DCTE 172 (178)
Q Consensus 169 ~~i~ 172 (178)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2.1e-32 Score=181.51 Aligned_cols=152 Identities=20% Similarity=0.359 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.++||||||++++..+.+.. +.|+.+.+.. .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998887764 6677665442 2333 3578899999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHH-HHHHH----HHcCCeEEEEeCCCCCCHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
|++++.+++.+..++..+... ...+.|+++++||+|+.+... ..+ ...+. ....+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877776543 235689999999999865322 222 22221 1224568899999999999999
Q ss_pred HHHHh
Q 030364 165 YEIGD 169 (178)
Q Consensus 165 ~~l~~ 169 (178)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99975
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.4e-31 Score=180.95 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=123.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.++||||||++++..+.+.. +.|+.+.+.. .+.. ..+.+++||+||++.+...+..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999998877753 5667665442 2333 3578899999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++++++.+..++..+... ..++.|++|++||+|+++.. ..++........ .+.++++||++|+|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999888777766542 23679999999999987643 223322222111 1246789999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++|+||.+.+..
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.2e-31 Score=179.67 Aligned_cols=155 Identities=23% Similarity=0.331 Sum_probs=124.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|.++||||||++++.++.+.. +.+|.+.... .... ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886654 5666654442 2233 35788999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG------LSFLETSAKSAHNVNELF 164 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 164 (178)
.+++++++.+..|+..+... ...+.|+++++||+|+.. .+..++...+.+..+ +.+++|||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999999988887653 245689999999999864 344455555543222 378899999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
+||.+.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999987653
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.1e-31 Score=179.06 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=124.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
..+...++|+++|++|+|||||++++.+..+ ..+.++.+.. ...+..+ .+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3445678999999999999999999997744 3455665533 2333444 477899999999998888999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCC
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH 158 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
++++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.. ..++...+.. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999988888776543 34689999999999986533 3344444432 245789999999999
Q ss_pred CHHHHHHHHHh
Q 030364 159 NVNELFYEIGD 169 (178)
Q Consensus 159 ~i~~~~~~l~~ 169 (178)
|++++|++|++
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=5.6e-32 Score=183.06 Aligned_cols=159 Identities=19% Similarity=0.317 Sum_probs=122.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|++|+|||||++++..+.+.. +.||.+.+.. .+.. ..+.+.+||+||++.+...+..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998877764 5566665443 2223 4578899999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++....++..+... ...+.|+++|+||.|+++.. ..++..... +...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988777766432 23578999999999986522 222221111 1122467799999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++|+||.+.+.+
T Consensus 168 e~~~~l~~~i~~ 179 (182)
T PTZ00133 168 EGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=2.4e-31 Score=180.27 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=127.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+.+||+++|.+|||||||++++..+.+.. ..++.+.+.....+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 46899999999999999999999888765 3566555554444443 446688999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH------cCCeEEEEeCCCCCCH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------NGLSFLETSAKSAHNV 160 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 160 (178)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+... ...++...+... ..++++++||++|.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999998888887776542 357999999999998642 223333333321 1357899999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
++++++|.+.+..
T Consensus 159 ~~l~~~l~~~l~~ 171 (183)
T cd04152 159 QEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987743
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.3e-30 Score=179.64 Aligned_cols=166 Identities=30% Similarity=0.510 Sum_probs=143.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44556899999999999999999988888888888999998888888878888999999999999999989999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
++++|||++++.++..+..|+..+... ..+.|+++++||+|+... .... +...+++..++.++++||++|.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999888765 367899999999998643 2322 3345677788999999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
.+|++.+..
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999987653
No 109
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-31 Score=164.26 Aligned_cols=166 Identities=42% Similarity=0.741 Sum_probs=155.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
+-...+|-+++|.-|+|||+|+..+...+|...-..+.+...-...+.+.+..+++++||+.|+++|+.....|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34568899999999999999999999999988788889999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
.+.|||++.+..+..+..|+........|+..+++++||.|+..++.+..+++..|+.++++.+.++||++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhc
Q 030364 166 EIGDCT 171 (178)
Q Consensus 166 ~l~~~i 171 (178)
.-.++|
T Consensus 167 e~akki 172 (215)
T KOG0097|consen 167 ETAKKI 172 (215)
T ss_pred HHHHHH
Confidence 655544
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=100.00 E-value=2e-30 Score=177.12 Aligned_cols=149 Identities=20% Similarity=0.380 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-----CeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-----EVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
+||+++|.+++|||||++++.++.+.+.+.+|.+.+...+.+.++ +..+.+.+||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888998877777766663 567899999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCccccccCHH----HHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQG-------------------NPNLIMFLVANKVDLEEKRKVKNE----EGELYA 142 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~ 142 (178)
+|+|||+++++|++++..|+..+.... .++.|++||+||+|+.+.+.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987631 247899999999999766555444 245678
Q ss_pred HHcCCeEEEEeCCCCCC
Q 030364 143 QENGLSFLETSAKSAHN 159 (178)
Q Consensus 143 ~~~~~~~~~~Sa~~~~~ 159 (178)
++.+++.++.++.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999876543
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=2.4e-30 Score=172.86 Aligned_cols=160 Identities=28% Similarity=0.390 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|.+|+|||||++++..+.+...+.++. ... .....+.+..+.+.+||+||...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998866533322 222 233455667789999999999888777777889999999999
Q ss_pred ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHHc-C-CeEEEEeCCCCCCHHHHHH
Q 030364 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQEN-G-LSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~ 165 (178)
|++++++++.+. .|+..+.... ++.|+++|+||+|+.+..... .+....+.... + .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 5767776653 589999999999997654421 22223333333 2 3899999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887654
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=1.3e-30 Score=173.36 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+|+++|++|||||||++++.++.+ ...+.++.+..... .. ...+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 45566776644322 22 33578889999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 162 (178)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... ..+...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887775532 25799999999999865322 222221111 1234689999999999999
Q ss_pred HHHHHHhh
Q 030364 163 LFYEIGDC 170 (178)
Q Consensus 163 ~~~~l~~~ 170 (178)
+|+||.++
T Consensus 155 ~~~~l~~~ 162 (162)
T cd04157 155 GVQWLQAQ 162 (162)
T ss_pred HHHHHhcC
Confidence 99999753
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=4.8e-30 Score=172.58 Aligned_cols=154 Identities=23% Similarity=0.360 Sum_probs=120.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.++|+++|++|+|||||++++..+.+.. +.++.+.++. ....+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887765 4566554442 23333 4778899999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHH-HHHHH----HHcCCeEEEEeCCCCCCHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~ 162 (178)
|+|+++++++.....++..+.... ..+.|+++++||+|+.+.. ..++ ...+. +..+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999999988877777665432 3578999999999986522 2222 22221 23456899999999999999
Q ss_pred HHHHHHh
Q 030364 163 LFYEIGD 169 (178)
Q Consensus 163 ~~~~l~~ 169 (178)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999976
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.97 E-value=2.1e-30 Score=173.17 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
+|+++|++|||||||++++.++ +...+.++.+... ..+..+ .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 6566777776543 333343 4778899999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHH----HHHHHHHc--CCeEEEEeCCCC------C
Q 030364 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE----GELYAQEN--GLSFLETSAKSA------H 158 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~Sa~~~------~ 158 (178)
++++.+++.+..|+..+.... ..+.|+++|+||+|+++........ ...+++.. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999988887643 3689999999999997654221111 12223222 357888999998 8
Q ss_pred CHHHHHHHHHh
Q 030364 159 NVNELFYEIGD 169 (178)
Q Consensus 159 ~i~~~~~~l~~ 169 (178)
|+++.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 115
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=3.5e-30 Score=173.14 Aligned_cols=159 Identities=27% Similarity=0.420 Sum_probs=126.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..++.+||+++|+.||||||+++++..+.... ..||.+.. ...+.+++ +.+.+||.+|+..++..|..++..+|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 44779999999999999999999998765443 55555544 34455555 667899999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHH------HcCCeEEEEeCCCCC
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAH 158 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 158 (178)
+|||+|.++.+.+.+....+..+... ...+.|+++++||+|++++. ..++...... ...+.++.|||.+|+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 99999999998888888777776653 34689999999999987643 2333332221 234578999999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|+.+.++||.++|
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999875
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=3.9e-30 Score=170.80 Aligned_cols=152 Identities=22% Similarity=0.378 Sum_probs=118.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
+|+++|++|+|||||++++.++.+.. ..++.+.+. ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999888754 355555433 233333 35789999999999998889999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHH------HHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE------LYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
.+++.++.....++..+.... ..+.|+++|+||+|+..... ..+.. .++...++++++|||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999888887776532 36899999999999864221 12221 1222234579999999999999999
Q ss_pred HHHHh
Q 030364 165 YEIGD 169 (178)
Q Consensus 165 ~~l~~ 169 (178)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99865
No 117
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=1e-29 Score=161.39 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=131.6
Q ss_pred cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
...+.++++|+++|..||||||++++|.+.. .+...|+.+.+... ..++ .+++++||.+|+...+..|.+||.++
T Consensus 10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt--l~~~--~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 10 QKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT--LEYK--GYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE--EEec--ceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 3445679999999999999999999998655 44466777655433 3333 47888999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHH----HHHHHHHHcCCeEEEEeCCCCC
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNE----EGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
|++|+|+|.+|+..++.....+..+.. ....+.|++|++||.|++.+-..... ....+++...++++.|||.+|+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999999988777766544 33467899999999999753322111 2234456678999999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
++.+.++||+..+.+
T Consensus 165 ~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMS 179 (185)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998876
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.8e-29 Score=167.74 Aligned_cols=153 Identities=24% Similarity=0.296 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC------CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
+|+++|++|+|||||++++.+... ...+.++.+... ..+.++ ...+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 222334443333 233444 4678899999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH-------cCCeEEEEeCCCC
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NGLSFLETSAKSA 157 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 157 (178)
+++|+|+++++++.....++..+.+.. ..+.|+++++||+|+.... ...+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988988888887766532 4689999999999986532 22333333222 3468999999999
Q ss_pred CCHHHHHHHHHhh
Q 030364 158 HNVNELFYEIGDC 170 (178)
Q Consensus 158 ~~i~~~~~~l~~~ 170 (178)
.|++++++||.++
T Consensus 155 ~gv~e~~~~l~~~ 167 (167)
T cd04160 155 TGVREGIEWLVER 167 (167)
T ss_pred cCHHHHHHHHhcC
Confidence 9999999999763
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=3.4e-29 Score=170.72 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+..+|+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ +.+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987764 355555433 23344444 57789999999998888889999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH----------------cCCeEE
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----------------NGLSFL 150 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 150 (178)
+|+|.++.+++.....++..+.... ..+.|+++++||+|+.. .+..++....... ..++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999988888877776533 36799999999999864 3444555554432 225799
Q ss_pred EEeCCCCCCHHHHHHHHHhhc
Q 030364 151 ETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+|||++|.|++++|+||.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998754
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=6.7e-30 Score=169.38 Aligned_cols=151 Identities=23% Similarity=0.355 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|++++|||||++++..+.+.. ..++.+.+.. .+.. ..+.+++||+||+..+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777653 4455444332 2223 34788999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGE-LYA----QENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
++++.++.....++..+.+ ....+.|+++++||+|+.+... ..+.. .+. ...+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888776666655433 3346799999999999865331 12221 111 11235799999999999999999
Q ss_pred HHHh
Q 030364 166 EIGD 169 (178)
Q Consensus 166 ~l~~ 169 (178)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 121
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=4e-30 Score=171.13 Aligned_cols=164 Identities=30% Similarity=0.532 Sum_probs=145.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
...+|++|+|..++|||+|+-.+..+.|++.+.||....+ ...+.+ ++..+.+.+|||.|+++|+.+++..+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3578999999999999999999999999999999999544 555677 59999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcC-CeEEEE
Q 030364 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLET 152 (178)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 152 (178)
++||++.+++|++++ ..|+.++..+ .++.|+++||+|.|+.. ...+..+++..++++.| ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHH-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhh-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999996 5888888877 58999999999999863 23677788999999999 589999
Q ss_pred eCCCCCCHHHHHHHHHhhccc
Q 030364 153 SAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
||++..|++++|+..++....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999988876644
No 122
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=1.2e-28 Score=165.52 Aligned_cols=141 Identities=45% Similarity=0.692 Sum_probs=128.1
Q ss_pred CcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC
Q 030364 33 GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112 (178)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 112 (178)
+.|.+.+.+|.+.++....+.+++..+++.|||++|++.+...+..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677789999999988888899999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 113 NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.++.|+++|+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|++.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5688999999999998767778888888888889999999999999999999999988754
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=2e-29 Score=167.08 Aligned_cols=151 Identities=22% Similarity=0.318 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
||+++|.+|+|||||++++.++.. ..+.++.+.... .+.+. .+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 335555554432 23333 4678899999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Q 030364 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++++++.....++..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887776533 4689999999999986543 2222222222 2346899999999999999999
Q ss_pred HHHh
Q 030364 166 EIGD 169 (178)
Q Consensus 166 ~l~~ 169 (178)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=5.8e-29 Score=168.65 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=121.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.++|+++|.+|+|||||++++.++.+.. +.++.+.+. ..+..+ .+.+.+||+||+..+...+..++..+|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999999876543 344443322 223333 36788999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEEe
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETS 153 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 153 (178)
++|+|+++++++.....++..+... ...+.|+++|+||+|++. .+..++....... ....+++||
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999998888777776543 236789999999999864 2333333322210 234699999
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 030364 154 AKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i 171 (178)
|++|.|++++++||.+++
T Consensus 167 a~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 167 VVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred cccCCChHHHHHHHHhhC
Confidence 999999999999998753
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=2.6e-28 Score=174.46 Aligned_cols=141 Identities=26% Similarity=0.470 Sum_probs=121.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-------------CeEEEEEEEeCCCchhhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-------------EVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~ 73 (178)
+...+||+++|..|||||||++++.++.+...+.++.+.++..+.+.++ +..+.++|||++|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 3458999999999999999999999999988888999888776766654 256889999999999999
Q ss_pred ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCcccc---c---cCH
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN------------PNLIMFLVANKVDLEEKR---K---VKN 135 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~~ivv~nK~D~~~~~---~---~~~ 135 (178)
.++..+++++|++|+|||++++++++++..|+..+..... .+.|++||+||+|+...+ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987531 258999999999996542 2 357
Q ss_pred HHHHHHHHHcCC
Q 030364 136 EEGELYAQENGL 147 (178)
Q Consensus 136 ~~~~~~~~~~~~ 147 (178)
+++..|++.+++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 889999998874
No 126
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.4e-29 Score=161.54 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=132.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...++++|+++|..++||||++++|..+++... .||.+..+. .+.+. ++.|++||.+|++.++..|..|+.+.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcE
Confidence 356799999999999999999999998888764 777765543 33444 5888999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCH---HHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|||+|.+|++-+...+..+..+..+.. ...|+++.+||.|++++-...+ .....-.....+.+-.|+|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 9999999999999998888777776653 7899999999999987544221 11111122245678899999999999
Q ss_pred HHHHHHHhhcccc
Q 030364 162 ELFYEIGDCTECF 174 (178)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (178)
+.++||.+.+...
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988754
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=9.5e-28 Score=158.68 Aligned_cols=151 Identities=26% Similarity=0.367 Sum_probs=119.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (178)
|+++|++|+|||||++++.+.++...+.++.+..... ...++ +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999998888777777655432 23333 7889999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 93 TSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++.+++.....++..+... ...+.|+++|+||+|+.+.... .+..... ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999988887777766543 2367899999999998654322 1111111 123468999999999999999999
Q ss_pred HHh
Q 030364 167 IGD 169 (178)
Q Consensus 167 l~~ 169 (178)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 975
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=2.4e-27 Score=159.33 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=118.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
......++|+++|++|+|||||++++.+..+.. +.++.+.+. ..+..++ ..+.+||+||+..+...+..+++.+|
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 344558999999999999999999999876533 455555332 2334444 56789999999888888888899999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--------CeEEEEeCC
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAK 155 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 155 (178)
++++|+|+++..++.....++..+... ...+.|+++++||+|+.+.... . .+.+..+ .+++++||+
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~---~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA--E---EIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH--H---HHHHHcCCcccCCCeEEEEEeECC
Confidence 999999999988888877777665543 2357999999999998653321 1 1222222 257899999
Q ss_pred CCCCHHHHHHHHHhh
Q 030364 156 SAHNVNELFYEIGDC 170 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (178)
+|+|++++|+||+++
T Consensus 159 ~~~gi~~~~~~l~~~ 173 (173)
T cd04155 159 TGEGLQEGMNWVCKN 173 (173)
T ss_pred CCCCHHHHHHHHhcC
Confidence 999999999999763
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=9.5e-28 Score=160.78 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchhh---hcCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~~~~d 84 (178)
+|+++|.+|+|||||+++|.+........+..+.......+.+++ ...+.+||+||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987554211111112222222233333 24788999999632 22223333 34699
Q ss_pred EEEEEEECCCH-hHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCH
Q 030364 85 AAVVVYDITSM-DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV 160 (178)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 160 (178)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+....... .....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 789888888888876532 478999999999986654432 333444444 3789999999999999
Q ss_pred HHHHHHHHhhc
Q 030364 161 NELFYEIGDCT 171 (178)
Q Consensus 161 ~~~~~~l~~~i 171 (178)
+++|++|.+.+
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=1.2e-27 Score=159.98 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc---------chhhhc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---------APMYYR 81 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---------~~~~~~ 81 (178)
.+|+++|.+|+|||||+++|.++.+.....+..+.+...... ....+.+.+||+||....... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887643222222222222222 223478899999997321110 011122
Q ss_pred CCcEEEEEEECCCHhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 82 GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
.+|++++|+|++++.+ ++....|+..+... ..+.|+++|+||+|+.....+.. ...+.+..+++++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 3689999999998754 35556677777554 25789999999999876544332 4455555678999999999999
Q ss_pred HHHHHHHHHhhc
Q 030364 160 VNELFYEIGDCT 171 (178)
Q Consensus 160 i~~~~~~l~~~i 171 (178)
+++++++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.96 E-value=2e-27 Score=160.48 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc-------CCCCccC------ceeeeEEEEEE--Ee---CCeEEEEEEEeCCCchhhh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQES------TIGAAFFTQVL--SL---NEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~~~~~ 73 (178)
+|+++|++++|||||+++|++.. +...+.+ +.+.+...... .+ ++..+.+.+||+||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1111222 11223322222 22 5667889999999999999
Q ss_pred ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---eEE
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFL 150 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 150 (178)
..+..++..+|++|+|+|++++.+......|.... ..+.|+++|+||+|+.+.. .......+++.+++ +++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876665555443322 2467899999999986422 12233455555565 489
Q ss_pred EEeCCCCCCHHHHHHHHHhhcc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999998764
No 132
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-30 Score=165.62 Aligned_cols=167 Identities=30% Similarity=0.496 Sum_probs=156.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+.-+|++|+|..++||||++++++.+-|...+..+.+.+....++.+.+..+...+||++|+++|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 35789999999999999999999999999999999999998888888888888999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+||+.+|+.||+....|++.+... ...+|.++|-||+|+.+...+...+.+-+++.+.+.++.+|++...|+..+|..|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999999876 4689999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccccc
Q 030364 168 GDCTECFS 175 (178)
Q Consensus 168 ~~~i~~~~ 175 (178)
++++.+..
T Consensus 177 aeK~~q~~ 184 (246)
T KOG4252|consen 177 AEKLTQQK 184 (246)
T ss_pred HHHHHHHH
Confidence 98776543
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96 E-value=2.1e-27 Score=163.58 Aligned_cols=157 Identities=21% Similarity=0.193 Sum_probs=114.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPM 78 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~ 78 (178)
++.++|+++|++|||||||++++.+..+.....+..+.+.....+.+++. ..+.+||+||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 45689999999999999999999987643322223333333334444443 3678999999732 11111 2
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+....... ......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35789999999999998888877777777766555678999999999986543221 3344566799999999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.96 E-value=3.3e-27 Score=172.16 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------hccchhhhcCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSLAPMYYRGA 83 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~ 83 (178)
..|.++|.||||||||++++++.+..-...+.++.......+.+.+ ...+.+||+||..+- ...+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3789999999999999999997653321222233333333444422 345789999996321 11223345679
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+++++|+|+++.++++.+..|..++..+.. .++|+++|+||+|+........+....+.+..+++++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988889999899888877532 478999999999997655444344455555667899999999999999
Q ss_pred HHHHHHHhhccccc
Q 030364 162 ELFYEIGDCTECFS 175 (178)
Q Consensus 162 ~~~~~l~~~i~~~~ 175 (178)
+++++|.+.+.+.+
T Consensus 318 eL~~~L~~~l~~~~ 331 (335)
T PRK12299 318 ELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887654
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.95 E-value=2.1e-26 Score=151.97 Aligned_cols=158 Identities=29% Similarity=0.519 Sum_probs=127.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777887777777677777778899999999999988888889999999999
Q ss_pred EECCCH-hHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 90 YDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|.... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 6666654 56666655443488999999999986543 33344444555556789999999999999999987
Q ss_pred H
Q 030364 168 G 168 (178)
Q Consensus 168 ~ 168 (178)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=2e-26 Score=153.41 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc---CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+.|+++|.+|+|||||+++|.+.. +.....+..+.+.......+.. ...+.+||+||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 478999999999999999998642 2222233333333333344442 357889999999988776677788999999
Q ss_pred EEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHH---cCCeEEEEeCCCCCC
Q 030364 88 VVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQE---NGLSFLETSAKSAHN 159 (178)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 159 (178)
+|+|+++ +++.+.+ ..+... ...|+++++||+|+...... ...+.....+. .+.+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333332 222222 22489999999998653211 11222333333 467999999999999
Q ss_pred HHHHHHHHHh
Q 030364 160 VNELFYEIGD 169 (178)
Q Consensus 160 i~~~~~~l~~ 169 (178)
++++++.|.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 137
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.95 E-value=1.5e-25 Score=146.77 Aligned_cols=154 Identities=45% Similarity=0.784 Sum_probs=122.9
Q ss_pred EEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC
Q 030364 15 LLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 15 v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (178)
++|++|+|||||++++.+... .....++. ................+.+||+||...+......++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444554 6666666677777889999999999888888888899999999999999
Q ss_pred CHhHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCccccccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 94 SMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 94 ~~~s~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|+.++.|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999988887773 33333445789999999999987654433332 34455566789999999999999999999864
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=155.09 Aligned_cols=163 Identities=39% Similarity=0.533 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|++|+|||||+++|.++.+...+.++.+..............+++.+||++|++.++..+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988999988888777777766688999999999999999999999999999999
Q ss_pred EECCC-HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHc---CCeEEEEe
Q 030364 90 YDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQEN---GLSFLETS 153 (178)
Q Consensus 90 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 153 (178)
+|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5556667888888888765679999999999997653 22222222222222 33489999
Q ss_pred CC--CCCCHHHHHHHHHhhcc
Q 030364 154 AK--SAHNVNELFYEIGDCTE 172 (178)
Q Consensus 154 a~--~~~~i~~~~~~l~~~i~ 172 (178)
++ .+.++.++|..+.+.+.
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHH
Confidence 99 99999999999988775
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=9e-26 Score=150.86 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
.|+++|.+|+|||||+++|..+.+.....+..+.+........+ .....+.+||+||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999888765444344433333333333 13567889999999988888888899999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQ------ENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 163 (178)
|+++...... ...+..+.. .+.|+++|+||+|+....... ......+.. ...++++++|+++|.|++++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9997432221 112222322 468899999999986432111 111111111 12368999999999999999
Q ss_pred HHHHHhhccc
Q 030364 164 FYEIGDCTEC 173 (178)
Q Consensus 164 ~~~l~~~i~~ 173 (178)
+++|.+...+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T cd01887 158 LEAILLLAEK 167 (168)
T ss_pred HHHHHHhhhc
Confidence 9999887654
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=2e-26 Score=150.09 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch-----hhhccchhhhcCCcEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~d~~ 86 (178)
||+++|++|+|||||++++.++.+. +.++.+.+ +.. .+||+||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999977642 22322211 111 589999972 2333333 47899999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY 165 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (178)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++...+++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999888754 2333221 238999999999864 23344556677777776 899999999999999999
Q ss_pred HHH
Q 030364 166 EIG 168 (178)
Q Consensus 166 ~l~ 168 (178)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 885
No 141
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-25 Score=138.92 Aligned_cols=168 Identities=22% Similarity=0.310 Sum_probs=145.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-hccchhhhcCCcE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAAA 85 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~ 85 (178)
+..||+|||..++|||+++..|..+... .++.+|....+.....+-.+..-.+.++||.|...+ ..+-.+|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4789999999999999999998776543 446777777777666666777778899999998777 6677889999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+++|||..+++||+.+..+-..|.++. ...+|++|++||+|+.+++++..+-+..|++...+..+++++.+..++-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999999877777777654 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccc
Q 030364 165 YEIGDCTECFSL 176 (178)
Q Consensus 165 ~~l~~~i~~~~~ 176 (178)
..+..++.++..
T Consensus 168 ~~l~~rl~~pqs 179 (198)
T KOG3883|consen 168 TYLASRLHQPQS 179 (198)
T ss_pred HHHHHhccCCcc
Confidence 999998876543
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.94 E-value=2.5e-26 Score=157.93 Aligned_cols=155 Identities=23% Similarity=0.206 Sum_probs=105.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhccc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLA 76 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~ 76 (178)
...++|+++|.+|+|||||++++.+..+.....+ +.+......... .+.+||+|| .+.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4578999999999999999999998876544444 333333333333 478999999 45566655
Q ss_pred hhhhc----CCcEEEEEEECCCHhHH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH
Q 030364 77 PMYYR----GAAAAVVVYDITSMDSF-E---------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA 142 (178)
Q Consensus 77 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~ 142 (178)
..++. .++++++|+|.++.... + .-..++..+. ..+.|+++|+||+|+.... .+....+.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55553 45788888888653211 0 0011122222 2478999999999986533 23445555
Q ss_pred HHcCC---------eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 143 QENGL---------SFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 143 ~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
+.+++ +++++||++| |+++++++|.+.+...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 55554 5899999999 99999999999887654
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.94 E-value=1.9e-25 Score=147.79 Aligned_cols=149 Identities=21% Similarity=0.197 Sum_probs=110.3
Q ss_pred EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc------chhhhc--CCcEE
Q 030364 15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYYR--GAAAA 86 (178)
Q Consensus 15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~d~~ 86 (178)
++|.+|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||...+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765443445445555455556665 46789999998766542 445554 89999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|+|+++++... .++..+.. .+.|+++++||+|+.....+... ...+...++++++++||++|.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865432 23333333 36899999999999765444333 45667777899999999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+.++
T Consensus 152 l~~~~~ 157 (158)
T cd01879 152 IAELAE 157 (158)
T ss_pred HHHHhc
Confidence 988754
No 144
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.94 E-value=3.1e-27 Score=147.63 Aligned_cols=160 Identities=22% Similarity=0.346 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
.++.+.++|..++|||||+|....+.+.+...|+.+.. ...+....+.+.+||.||+..|+.+|..|.++++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 37899999999999999999999888887788888744 34455567888999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
|+|+++++.++..+..+..+.. ....+.|++|++||.|++++-. ......- .....+-+|.+|++...+++.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--KIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--HHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 9999999998888766666544 4468999999999999876432 2221111 112335789999999999999
Q ss_pred HHHHHHhhcccc
Q 030364 163 LFYEIGDCTECF 174 (178)
Q Consensus 163 ~~~~l~~~i~~~ 174 (178)
+.+||++..+..
T Consensus 173 ~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 173 TLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHhhhh
Confidence 999999876654
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=2e-25 Score=164.02 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (178)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ..+.+|||+|.. .|... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 3589999999999999999999987654333333334445555666432 467899999971 22222 224
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
+..+|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....+ ... .....+++.+||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCC
Confidence 788999999999999888887776666666654557899999999998643221 111 11235789999999999
Q ss_pred HHHHHHHHHhh
Q 030364 160 VNELFYEIGDC 170 (178)
Q Consensus 160 i~~~~~~l~~~ 170 (178)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=2.9e-25 Score=161.83 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh----ccc---hhhhcCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLA---PMYYRGA 83 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~---~~~~~~~ 83 (178)
..|+++|.||||||||++++...+......+.++.......+.+++ ...+.+||+||..... .+. ...++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999997653211112222333333344443 3567899999974221 222 2335579
Q ss_pred cEEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
+++++|+|+++. ++++.+..|.+++.... ..+.|+++|+||+|+..+.. ..+....+.+..+.+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 67888888877776543 25789999999999876533 2334455666677899999999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 147
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.5e-26 Score=140.41 Aligned_cols=159 Identities=23% Similarity=0.389 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.++++|+++|..++||||++..|..+.... ..||.+.. ...+++. +++|.+||.+|+++.+..|.+|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFn--vetVtyk--N~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-ccccccee--EEEEEee--eeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 458999999999999999999999776543 44555533 4444444 478889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 161 (178)
||+|..+++..++.+..+..+.. ....+.|++|.+||.|++++..+ .+...+ ++...+-+.++|+.+|.|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999888887765555444 44578999999999999875543 333222 33344678899999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
+-|.||.+.++.
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999987753
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=8e-26 Score=154.56 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CcCCCCc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 76 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 76 (178)
.+|+++|.+++|||||+++|++ +.+...+ .++.+.+.......+....+.+.+||+||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443322 1233444444444555556788999999999999999
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc-CHHHHHHHHH-------HcCCe
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQ-------ENGLS 148 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 148 (178)
..+++.+|++++|+|+++.. +.....++..+.. .+.|+++++||+|+...... ..++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333333443333 36889999999998643221 1223333331 23679
Q ss_pred EEEEeCCCCCCHHHH
Q 030364 149 FLETSAKSAHNVNEL 163 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~ 163 (178)
++++||++|.|+++.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999876443
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=2.8e-25 Score=144.48 Aligned_cols=148 Identities=19% Similarity=0.274 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhh--cC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYY--RG 82 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~--~~ 82 (178)
++|+++|.||+|||||+|+|++.+..-...|..+.+.....+.+.+ ..+.++|+||.-... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999875433344455555555566666 466799999952222 1223333 68
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
.|++++|+|+++.+ +-..+..++... +.|+++++||+|......+. .....+++.+++|++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999999743 323344455544 78999999999987654433 346677888999999999999999999
Q ss_pred HHHHH
Q 030364 163 LFYEI 167 (178)
Q Consensus 163 ~~~~l 167 (178)
++++|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=3.9e-25 Score=158.11 Aligned_cols=154 Identities=18% Similarity=0.081 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE-EEEEEeCCeEEEEEEEeCCCchhhh--------ccchhhhcC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYYRG 82 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~~ 82 (178)
+|+++|.||+|||||+|+|++.++.. ..+..+++.. ...+...+ ..++.+|||||..... .....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999876532 1221122111 12222222 2468899999974321 112346789
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN 161 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (178)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876554 333333433 36899999999998643322 2233344444444 89999999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
+++++|.+.+..
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999987753
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=9.7e-25 Score=138.02 Aligned_cols=114 Identities=32% Similarity=0.568 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
||+|+|++|||||||+++|.+..+. ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22344455555555667777777799999999999998888889999999999
Q ss_pred EECCCHhHHHHHHHH---HHHHHHhCCCCceEEEEEeCCC
Q 030364 90 YDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~ivv~nK~D 126 (178)
||++++++++.+..+ +..+... ..+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999998655 4444443 45699999999998
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=9.1e-25 Score=147.01 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=107.4
Q ss_pred EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----hccc---hhhhcCCcEEE
Q 030364 15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLA---PMYYRGAAAAV 87 (178)
Q Consensus 15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~---~~~~~~~d~~i 87 (178)
++|++|||||||+++|.+........+..+.........+++ ...+.+||+||.... .... ...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764211112222222223334441 356789999996321 1222 23467899999
Q ss_pred EEEECCCH------hHHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364 88 VVYDITSM------DSFERAKKWVQELQRQGN-------PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154 (178)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
+|+|++++ .+++....|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577777777777765432 47899999999999765443333223344445678999999
Q ss_pred CCCCCHHHHHHHHHhh
Q 030364 155 KSAHNVNELFYEIGDC 170 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (178)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998765
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=2.1e-24 Score=158.38 Aligned_cols=154 Identities=21% Similarity=0.316 Sum_probs=104.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee--eEEEEEEEeCCeEEEEEEEeCCCchh-hhccc-------h
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQER-YHSLA-------P 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~-------~ 77 (178)
++..+|+++|.+|+|||||+|+|.+.++.. ..+..++ ......+..++ .++.||||||... +..+. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456799999999999999999999877642 2222222 22233344444 4678999999843 22211 2
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeC
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSA 154 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 154 (178)
..+..+|++++|+|..+ ++.... .++..+... +.|.++|+||+|+... ...+...++...+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 34679999999999775 344433 344444432 4577889999998643 1234444444443 68999999
Q ss_pred CCCCCHHHHHHHHHhhcc
Q 030364 155 KSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i~ 172 (178)
++|.|+++++++|.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccCHHHHHHHHHHhCC
Confidence 999999999999998764
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=1.8e-24 Score=142.81 Aligned_cols=146 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhhhc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYR 81 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 81 (178)
++|+++|++|+|||||++++.+..... ...+..+..........++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 1222222233333334443 56789999997544321 234567
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+...... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998776666543322 357899999999998754433 334456799999999999999
Q ss_pred HHHHHHHhhc
Q 030364 162 ELFYEIGDCT 171 (178)
Q Consensus 162 ~~~~~l~~~i 171 (178)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=3.3e-24 Score=163.91 Aligned_cols=161 Identities=22% Similarity=0.199 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc-
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA- 76 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~- 76 (178)
..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.. +.+|||||. +.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 2233444444444555666654 569999995 2222222
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHH-HHHHHHcCCeEEEEe
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG-ELYAQENGLSFLETS 153 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~S 153 (178)
..+++.+|++++|+|++++.++..+. ++..+.. .+.|+++|+||+|+....... ..+. ..+.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999987777653 3344433 478999999999986422110 1111 122222347899999
Q ss_pred CCCCCCHHHHHHHHHhhccccc
Q 030364 154 AKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~~ 175 (178)
|++|.|++++|+.+.+.++.++
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=7.1e-24 Score=144.15 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCce--------------eeeEEEEEEEeCCeEEEEEEEeCCCchhhhccch
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI--------------GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP 77 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 77 (178)
+|+++|.+|+|||||++++.+........... +.+..............+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876654331111 1111122222222346788999999988888888
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHH-----------
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE----------- 144 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------- 144 (178)
.++..+|++++|+|++++..... ..++..+.. .+.|+++++||+|+..+.... ........+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 88999999999999997654332 233333332 578999999999987532221 1122222222
Q ss_pred ---cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 145 ---NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
...+++++||++|.|+++++.+|.+.+.
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999998874
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=7.3e-24 Score=159.88 Aligned_cols=151 Identities=20% Similarity=0.207 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (178)
..++|+++|.+|+|||||+|+|++... .....+.++.+.....+.+++. .+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998653 1222344445555666667664 5679999998554332 2357
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....+++.++.+++.+||++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988877664 5554432 46899999999998643 12344566778999999998 69
Q ss_pred HHHHHHHHHhhccc
Q 030364 160 VNELFYEIGDCTEC 173 (178)
Q Consensus 160 i~~~~~~l~~~i~~ 173 (178)
++++++.|.+.+.+
T Consensus 348 I~~~~~~L~~~i~~ 361 (442)
T TIGR00450 348 IKALVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.9e-23 Score=156.09 Aligned_cols=158 Identities=22% Similarity=0.184 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----hccchh---hhcCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLAPM---YYRGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~---~~~~~d 84 (178)
.|+++|.||||||||++++++.+..-...+.++.......+.++. ...+.+||+||.... ..+... .++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999997663211122223333333333331 356789999996321 112222 355699
Q ss_pred EEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 85 AAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
++++|+|+++. ++++....|..++..+. ..++|++||+||+|+... .+....+.+..+.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 67777777777777653 247899999999998432 2344556666668999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 030364 160 VNELFYEIGDCTECF 174 (178)
Q Consensus 160 i~~~~~~l~~~i~~~ 174 (178)
+++++++|.+.+...
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887654
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=7.7e-24 Score=144.55 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC----cCCCC---cc--CceeeeEEEEEEE----------eCCeEEEEEEEeCCCchh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG----QFFDF---QE--STIGAAFFTQVLS----------LNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~----~~~~~---~~--~~~~~~~~~~~~~----------~~~~~~~~~i~d~~g~~~ 71 (178)
++|+++|++++|||||+++|+.. .+... .. .+.........+. .++..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11111 11 1222222222222 123367889999999976
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHH-HHH-----
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGEL-YAQ----- 143 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~-~~~----- 143 (178)
+..........+|++++|+|+++.........+ . +... .+.|+++++||+|+...... ..++... +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 544444456678999999999975433322221 1 1121 25689999999998643221 1111111 111
Q ss_pred -HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 144 -ENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..+++++++||++|.|+++++++|.++|-
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 24579999999999999999999998874
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=5.8e-24 Score=140.65 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----hhhccchhhhcCCcEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~d~~i 87 (178)
+|+++|.+|+|||||++++.+..... ..+. ...+... .+||+||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987543211 1111 1122222 269999962 12222223478999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--SFLETSAKSAHNVNELFY 165 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 165 (178)
+|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+. ..+....++...++ |++++||++|+|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998776522 233322 246789999999998642 34455666666764 999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99987753
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=3.1e-24 Score=141.80 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=99.6
Q ss_pred EEEcCCCCCHHHHHHHHHhCcC--CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhcCC
Q 030364 14 VLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGA 83 (178)
Q Consensus 14 ~v~G~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~ 83 (178)
+++|.+|+|||||+++|.+... .... +..+.+........++ ..+.+||+||...+.. .....+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999997642 2222 2222223333333444 5688999999866443 334567889
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE 162 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 162 (178)
|++++|+|+.++.+.... .+.+.+.. .+.|+++|+||+|+...... .......+. +++++|+++|.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999875444332 22233332 25899999999998764332 122233555 889999999999999
Q ss_pred HHHHHHhhc
Q 030364 163 LFYEIGDCT 171 (178)
Q Consensus 163 ~~~~l~~~i 171 (178)
++++|++.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=1.6e-23 Score=163.04 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc-------CCCCccC------ceeeeEEEEEE--Ee---CCeEEEEEEEeCCCchh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQES------TIGAAFFTQVL--SL---NEVTIKFDIWDTAGQER 71 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~~~ 71 (178)
..+++++|+.++|||||+++|+... +...+.. ..+.+...... .+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5689999999999999999998742 1111211 22333333322 22 46678999999999999
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---e
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---S 148 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 148 (178)
|...+..+++.+|++++|+|++++.+......|...+. .+.|+++++||+|+.... ......++.+.+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766665555544332 367899999999986432 12223445555555 4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 149 FLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
++.+||++|.|++++|++|.+.+...
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 89999999999999999999887654
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=5.3e-24 Score=162.75 Aligned_cols=154 Identities=22% Similarity=0.188 Sum_probs=107.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchhhh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYY 80 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 80 (178)
..+|+++|.+|||||||+|+|++.... ....+..+.+.......+++. .+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987642 223333333444444455553 577999999752 334456678
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
+.+|++++|+|++++.++.. ..+...+.. .+.|+++|+||+|+.... .+....+....+ ..+++||++|.|+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 99999999999998755433 233344433 478999999999986422 122222322233 3479999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
+++|++|++.+..
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988754
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=6.6e-24 Score=160.87 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=110.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (178)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999987642 22333344444455556665 45789999998654322 2336
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999877765433322 3578999999999986533221 33567899999999999
Q ss_pred HHHHHHHHHhhccc
Q 030364 160 VNELFYEIGDCTEC 173 (178)
Q Consensus 160 i~~~~~~l~~~i~~ 173 (178)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 165
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.3e-23 Score=158.91 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----h---ccchhhhcCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----H---SLAPMYYRGA 83 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~---~~~~~~~~~~ 83 (178)
..|+++|.||||||||+++|++.+..-...+.++.......+.+++ ..+.+||+||.... . ......+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4799999999999999999997654321222233333333444444 57889999995311 1 1122346789
Q ss_pred cEEEEEEECCC----HhHHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364 84 AAAVVVYDITS----MDSFERAKKWVQELQRQG-----------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (178)
Q Consensus 84 d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
|++++|+|+++ ++.++.+..+..++..+. ..+.|++||+||+|+++...... .........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCe
Confidence 99999999985 234555555555554332 24789999999999975443322 222233345789
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 149 FLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
++++||+++.|+++++.+|.+.+...+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999887654
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=3e-23 Score=142.04 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=106.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 76 (178)
.+..++|+++|.+|+|||||++++.+..+...+.++.+.+........ ...+.+||+||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345789999999999999999999987755555666555443333332 257889999994 3343444
Q ss_pred hhhhcCC---cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHHcCCeEEE
Q 030364 77 PMYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQENGLSFLE 151 (178)
Q Consensus 77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (178)
..+++.+ +++++++|.+++...... .+...+.. .+.|+++++||+|+....+.. .+...........++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 4455544 678888998865433221 11122222 367899999999986543221 12233333334679999
Q ss_pred EeCCCCCCHHHHHHHHHhhcc
Q 030364 152 TSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+||+++.|++++++.|.+.+.
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987765
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1.8e-23 Score=156.92 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hccc------hhhhcC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLA------PMYYRG 82 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~------~~~~~~ 82 (178)
.+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|.... ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987654323333344444444555442 25679999997321 1112 233688
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVN 161 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 161 (178)
+|++++|+|++++.+++.+..+...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998888776555555554445789999999999864211 1111 1123455 5889999999999
Q ss_pred HHHHHHHhhcc
Q 030364 162 ELFYEIGDCTE 172 (178)
Q Consensus 162 ~~~~~l~~~i~ 172 (178)
+++++|.+.+.
T Consensus 352 eL~e~I~~~l~ 362 (426)
T PRK11058 352 LLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999998874
No 168
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=132.57 Aligned_cols=162 Identities=25% Similarity=0.462 Sum_probs=142.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
-.+||.++|.+..|||||+-++.++.+.+++..+.+.....+.+.+.+..+.+.+||.+|++++..+.+..-.++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 47899999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-----RKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
+||++.++.+..+..|++..+.......| ++|++|.|..-. .+....+++.+++-.+++.+.||+..+.|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 99999999999999999998876555566 678999996321 122234567788889999999999999999999
Q ss_pred HHHHHhhc
Q 030364 164 FYEIGDCT 171 (178)
Q Consensus 164 ~~~l~~~i 171 (178)
|..+..++
T Consensus 178 FK~vlAkl 185 (205)
T KOG1673|consen 178 FKIVLAKL 185 (205)
T ss_pred HHHHHHHH
Confidence 98776654
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=4.6e-23 Score=156.57 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=107.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-----------
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------- 75 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------- 75 (178)
...++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999976532 112222333333334444553 6779999997443322
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCeEEE
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLE 151 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~ 151 (178)
...+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+........+....+... ..+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 124678999999999999876665542 3333333 3689999999999862111111111111111 2479999
Q ss_pred EeCCCCCCHHHHHHHHHhhcccc
Q 030364 152 TSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+||++|.|++++|+++.+.+..+
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998876644
No 170
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=4e-23 Score=142.05 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEE--Ee-------------------------C--C----
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVL--SL-------------------------N--E---- 56 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~-------------------------~--~---- 56 (178)
++|+++|+.|+|||||+..+.+-.... ......+.+...... .+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999996531111 000011111111000 00 0 1
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-- 134 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-- 134 (178)
....+.|||+||++.+.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267889999999988887777888999999999999742111112222333222 224689999999986532211
Q ss_pred HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.+....+... .+++++++||++|.|+++++++|.+.+..
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1222333332 25789999999999999999999987765
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=9.6e-23 Score=158.12 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+..+|+++|++++|||||++++.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4679999999999999999999988776544444444444444455432 267899999999999998888999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-------HcC--CeEEEEeCCCCCC
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-------ENG--LSFLETSAKSAHN 159 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~~~ 159 (178)
|+|+++....... ..+.... ..+.|+++++||+|+++.. .+....... .++ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999874221111 1122222 2478999999999986422 122222222 222 5799999999999
Q ss_pred HHHHHHHHHhh
Q 030364 160 VNELFYEIGDC 170 (178)
Q Consensus 160 i~~~~~~l~~~ 170 (178)
+++++++|...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998653
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=8.1e-23 Score=136.02 Aligned_cols=157 Identities=17% Similarity=0.084 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYR 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 81 (178)
..+|+++|.+|+|||||++++.+........ .................+.+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999765432111 111111111122233346788999999643322 2344578
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCH
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV 160 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (178)
.+|++++|+|++++... ....+...+... +.|+++++||+|+........+....+.... ..+++.+|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999986211 112223333332 6789999999998743332233334444444 368999999999999
Q ss_pred HHHHHHHHhhc
Q 030364 161 NELFYEIGDCT 171 (178)
Q Consensus 161 ~~~~~~l~~~i 171 (178)
++++++|.+.+
T Consensus 158 ~~l~~~l~~~~ 168 (168)
T cd04163 158 DELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=5.4e-23 Score=138.89 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhcc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL 75 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~ 75 (178)
.+....+|+++|.+|+|||||++++.+..+...+.++.+.+........++ .+.+||+||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345688999999999999999999998765444555555544444344333 57899999942 23333
Q ss_pred chhhhc---CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHcC--Ce
Q 030364 76 APMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LS 148 (178)
Q Consensus 76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~ 148 (178)
...+++ .++++++|+|++++-+.... .++..+.. .+.|+++++||+|+..+.+. ..++.....+..+ .+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 344554 35799999999875444443 22333332 36889999999998643322 1233334444443 58
Q ss_pred EEEEeCCCCCCHH
Q 030364 149 FLETSAKSAHNVN 161 (178)
Q Consensus 149 ~~~~Sa~~~~~i~ 161 (178)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 174
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-24 Score=134.50 Aligned_cols=162 Identities=21% Similarity=0.308 Sum_probs=123.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
++..++|+++|..|+||+|++.++.-++... ..|+.+... . ++..++.++++||.+|+...+..|..|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv--e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV--E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc--c--ccccccccceeeEccCcccccHHHHHHhcccceE
Confidence 3478999999999999999999988776654 445555332 2 2333668899999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccC---HHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
|+|+|.+|++...... .++.++.+....+..++|++||+|.+...... ......-.+..-+.++++||.+|+|++.
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999987666544 44455555556788899999999986532211 1111222233447999999999999999
Q ss_pred HHHHHHhhccc
Q 030364 163 LFYEIGDCTEC 173 (178)
Q Consensus 163 ~~~~l~~~i~~ 173 (178)
+.+||.+.++.
T Consensus 170 ~~DWL~~~l~~ 180 (182)
T KOG0072|consen 170 AMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=1.2e-22 Score=158.08 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC---cCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG---QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+.|+++|++++|||||+++|++. .+.++..+..+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47899999999999999999963 33333444555555455555555 67889999999999888888899999999
Q ss_pred EEEECCC---HhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEEEeCCCC
Q 030364 88 VVYDITS---MDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLETSAKSA 157 (178)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 157 (178)
+|+|+++ +++.+.+ ..+.. .+.| +++++||+|+.+.... ..++...+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 3444333 22322 2566 9999999998654432 122344444443 579999999999
Q ss_pred CCHHHHHHHHHhhcccc
Q 030364 158 HNVNELFYEIGDCTECF 174 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~~ 174 (178)
.|+++++++|.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999998776654
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.9e-22 Score=149.87 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d 84 (178)
.|+++|.||||||||+|+|++.+..-...|.++.....-.+...+ ...+.++|+||...-. ......++.+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999997664222222233333333344432 2357899999974311 11223578899
Q ss_pred EEEEEEECC---CHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCC
Q 030364 85 AAVVVYDIT---SMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA 157 (178)
Q Consensus 85 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 157 (178)
++++|+|++ +.+.++....|.+.+.... ..+.|+++|+||+|+.....+ .+....+.+..+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 4566777777777776542 246899999999998654333 233334444434 47999999999
Q ss_pred CCHHHHHHHHHhhccc
Q 030364 158 HNVNELFYEIGDCTEC 173 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~ 173 (178)
.|+++++++|.+.+..
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.5e-22 Score=146.58 Aligned_cols=159 Identities=17% Similarity=0.093 Sum_probs=103.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------ccchhhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYY 80 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~ 80 (178)
+.-.|+++|.+|||||||+|+|++.+... ..+...++.............++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 35579999999999999999999876532 12222222211111111123678899999964322 2234467
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN 159 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 159 (178)
..+|++++|+|++++... .....+..+. ..+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 889999999999983211 1122222232 2368999999999987332222233444444333 6899999999999
Q ss_pred HHHHHHHHHhhcc
Q 030364 160 VNELFYEIGDCTE 172 (178)
Q Consensus 160 i~~~~~~l~~~i~ 172 (178)
+++++++|.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998874
No 178
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.8e-24 Score=135.78 Aligned_cols=164 Identities=22% Similarity=0.242 Sum_probs=123.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC---C----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF---F----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 79 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 79 (178)
++..+.|+++|+.++|||||+.++..... . ....++.+.. ...+.+. ...+.+||.+|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 44588999999999999999988764221 1 1122333322 2333333 4567799999999999999999
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHH----HHHHHHcCCeEEEEeC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQENGLSFLETSA 154 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa 154 (178)
|..++++|+++|+++++-|+.....++.+... ...+.|+++.+||.|+.+..+..+... ........+++.++||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 99999999999999999999988777776554 358999999999999976544322111 1112234579999999
Q ss_pred CCCCCHHHHHHHHHhhcccc
Q 030364 155 KSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i~~~ 174 (178)
++|+||++...|++..+.+.
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988765
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=3.3e-23 Score=140.94 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
+.++|+++|+.++|||||+++|........ .....+................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 478999999999999999999986442110 00111112222222212445678899999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHHc---
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQEN--- 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~--- 145 (178)
.|.......+..+|++|+|+|+.++-.. .....+..+... +.|+++++||+|+...+. ...+....+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9988888889999999999999975332 233444445444 677999999999873221 1111122333322
Q ss_pred ---CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 146 ---GLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.++++.+||++|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35899999999999999999998875
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.90 E-value=2.1e-22 Score=158.54 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=110.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee--eEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.+..+|+++|++++|||||+++|....+.....+..+. ..+...+..++..+.+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 35679999999999999999999987665433322222 2222233334456889999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHH---HHHHcC--CeEEEEeCCCCCC
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGEL---YAQENG--LSFLETSAKSAHN 159 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~---~~~~~~--~~~~~~Sa~~~~~ 159 (178)
+|+|+|++++....... .+..+. ..+.|+++++||+|+....... ..+... +...++ ++++++||++|.|
T Consensus 322 aILVVDA~dGv~~QT~E-~I~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 322 AILIIAADDGVKPQTIE-AINYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEECcCCCChhhHH-HHHHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 99999998743222211 112222 3478999999999986532100 011111 122233 6899999999999
Q ss_pred HHHHHHHHHhhc
Q 030364 160 VNELFYEIGDCT 171 (178)
Q Consensus 160 i~~~~~~l~~~i 171 (178)
+++++++|....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999998754
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=8.2e-22 Score=132.09 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----------cch
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----------LAP 77 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~ 77 (178)
.++|+++|.+|+|||||++++.+..... ...+.............++. .+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999865321 12222222222333444543 467999999643211 112
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHH-HHHHHHHc----CCeEEEE
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQEN----GLSFLET 152 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~----~~~~~~~ 152 (178)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.......... ...+.+.. ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 346789999999999987665443 22233322 368999999999987643221121 12222222 3689999
Q ss_pred eCCCCCCHHHHHHHHHhh
Q 030364 153 SAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~ 170 (178)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=4.5e-22 Score=136.70 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC-cEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY 90 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-d~~i~v~ 90 (178)
+|+++|+++||||||+++|..+.+...+.++.. ..........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999887665544322 22221222123456788999999999988888889998 9999999
Q ss_pred ECCCH-hHHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCcc
Q 030364 91 DITSM-DSFERAKKWVQELQR---QGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~~~ivv~nK~D~~~ 129 (178)
|+++. .++..+..++..+.. ...++.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 677776666555432 2236899999999999854
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=3.2e-22 Score=158.75 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=109.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+...|+++|+.++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4578999999999999999999988776544333333333333444444 56889999999999999988899999999
Q ss_pred EEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHH--HHHHHHHcC--CeEEEEeCCCCC
Q 030364 88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEE--GELYAQENG--LSFLETSAKSAH 158 (178)
Q Consensus 88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~--~~~~~~~~~--~~~~~~Sa~~~~ 158 (178)
+|+|+++. ++.+.+ .... ..+.|++|++||+|+.+... +..+. ...++..++ ++++++||++|.
T Consensus 366 LVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999874 333221 2222 34789999999999865321 11110 011223333 789999999999
Q ss_pred CHHHHHHHHHhh
Q 030364 159 NVNELFYEIGDC 170 (178)
Q Consensus 159 ~i~~~~~~l~~~ 170 (178)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999999754
No 184
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.89 E-value=7.6e-22 Score=157.13 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc----------chhh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APMY 79 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~~ 79 (178)
.++|+++|+||+|||||+|++++.... .....+.+...+...+.....++.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999976542 3344555655555555556677889999998665432 1123
Q ss_pred --hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364 80 --YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (178)
Q Consensus 80 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
...+|++++|+|+++.+.. ..+...+.+. +.|+++++||+|+.+.+.+ ......+.+.++++++++|+++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2478999999999985432 2334444443 6899999999998755444 34567778889999999999999
Q ss_pred CCHHHHHHHHHhhc
Q 030364 158 HNVNELFYEIGDCT 171 (178)
Q Consensus 158 ~~i~~~~~~l~~~i 171 (178)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987754
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=9.6e-22 Score=153.32 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=114.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Cc------cCceeeeEEEEE--EEe---CCeEEEEEEEeCCC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQ------ESTIGAAFFTQV--LSL---NEVTIKFDIWDTAG 68 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~d~~g 68 (178)
.+...+++++|+.++|||||+.+|+... +.. .+ +...+.+..... +.+ ++..+.+.+|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 3446799999999999999999998632 111 00 112222322222 222 45578999999999
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL- 147 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 147 (178)
+.+|...+..++..+|++++|+|++++........|.... ..+.|+++|+||+|+..... ......+.+..++
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence 9999999999999999999999999865544444443322 23678999999999864321 2222334444555
Q ss_pred --eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 148 --SFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 148 --~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
.++.+||++|.|+++++++|.+.+...
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 489999999999999999999887654
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.89 E-value=4.5e-22 Score=155.02 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=106.4
Q ss_pred cCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc------chhhh--cCCcEEEE
Q 030364 17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVV 88 (178)
Q Consensus 17 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~d~~i~ 88 (178)
|++|+|||||+|++++........+..+.+.....+.+++ .++++||+||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765433444444444444555555 35689999998766543 23333 37899999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|+|+++.+.. ..+..++.+ .+.|+++++||+|+.+...+. .+.+.+++..+++++++||++|+|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999974321 222233322 478999999999987655543 346778888899999999999999999999998
Q ss_pred hhc
Q 030364 169 DCT 171 (178)
Q Consensus 169 ~~i 171 (178)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 187
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=125.84 Aligned_cols=163 Identities=21% Similarity=0.258 Sum_probs=125.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+++||+++|..++|||||+..|.+.. +.+..|+.+.. .+.+.+++ .+.+.+||.+|+...+..|.+|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 34679999999999999999999987544 34456666544 44555555 5789999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHH---HHHHHHcCCeEEEEeCCCCCCHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG---ELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|+|.+|..-|+++...+-++.. ......|+.+.+||.|+.-+..+..... ....+...+.+-+|||.+++|+.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999998888887666655554 3457899999999999865443322211 11122234578899999999999
Q ss_pred HHHHHHHhhcc
Q 030364 162 ELFYEIGDCTE 172 (178)
Q Consensus 162 ~~~~~l~~~i~ 172 (178)
.-.+|+....+
T Consensus 169 dg~~wv~sn~~ 179 (185)
T KOG0074|consen 169 DGSDWVQSNPE 179 (185)
T ss_pred CcchhhhcCCC
Confidence 99999988776
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=132.28 Aligned_cols=169 Identities=31% Similarity=0.540 Sum_probs=147.2
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 80 (178)
|..++.....++++++|..|.||||++++..-+++...+.++.+.........-+...+++..||+.|++.+......++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 45555556789999999999999999999999999999999999998888877776689999999999999999999999
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
-.....|++||+..+-.+.++.+|.+.+.+.+ .+.|+++.+||.|..... ...+...+.+..++.|++.||+.+-|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999988764 469999999999976533 223445566677899999999999999
Q ss_pred HHHHHHHHhhcc
Q 030364 161 NELFYEIGDCTE 172 (178)
Q Consensus 161 ~~~~~~l~~~i~ 172 (178)
+.-|-|+.+.+.
T Consensus 158 ekPFl~LarKl~ 169 (216)
T KOG0096|consen 158 ERPFLWLARKLT 169 (216)
T ss_pred ccchHHHhhhhc
Confidence 999999998764
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=5.8e-22 Score=150.57 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhccchhhhcC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ--------ERYHSLAPMYYRG 82 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~ 82 (178)
+|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 11223333334444445555 35789999996 3344556667899
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN 161 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (178)
+|++++|+|+.++..... ..+...+.+ .+.|+++|+||+|....... ...+ ..+++ +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence 999999999987543322 122233333 36889999999998653321 1222 34565 89999999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++++++.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.4e-21 Score=148.71 Aligned_cols=148 Identities=20% Similarity=0.160 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchhhhc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR 81 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 81 (178)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 11233333344444555555 6788999999865 2233455678
Q ss_pred CCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364 82 GAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAH 158 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (178)
.+|++++|+|+.++.+... +..| +.. .+.|+++|+||+|..+. .....++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~---l~~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKI---LRK---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999987533322 2222 222 27899999999996541 1222222 23555 48999999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|++++++++.+..
T Consensus 149 gv~~l~~~I~~~~ 161 (435)
T PRK00093 149 GIGDLLDAILEEL 161 (435)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998743
No 191
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=137.58 Aligned_cols=161 Identities=15% Similarity=0.053 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------ccchhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMY 79 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~ 79 (178)
.+.--|+++|.||+|||||+|++.+.+..- .++..+++......-+.....++.|+||||..... ......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 345679999999999999999999877643 34444444444443333346789999999964332 233455
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAH 158 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 158 (178)
+.++|+++||+|++++-.-. -...++.+.. .+.|+++++||.|...+..........+.... ...++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 78999999999999732211 1222233333 36799999999998765542122222222222 2489999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
|++.+.+.+...+.+
T Consensus 159 n~~~L~~~i~~~Lpe 173 (298)
T COG1159 159 NVDTLLEIIKEYLPE 173 (298)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887764
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=8.8e-22 Score=129.97 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhhhcCCcEE
Q 030364 15 LLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRGAAAA 86 (178)
Q Consensus 15 v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~d~~ 86 (178)
++|++|+|||||++++.+.... ....+............... ...+.+||+||....... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976543 22222222222222222221 457889999997655433 33477899999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH---HHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
++|+|+++........ +..... ..+.|+++++||+|+......... .........+++++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877665543 222332 357889999999998654433222 122233345679999999999999999
Q ss_pred HHHHHhhc
Q 030364 164 FYEIGDCT 171 (178)
Q Consensus 164 ~~~l~~~i 171 (178)
+++|.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1e-21 Score=149.45 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=105.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------c-
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------L- 75 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~- 75 (178)
...++|+++|.+|+|||||++++++... .....+..+.+.....+..++ ..+.+|||||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997653 222223333333333334444 4567999999532211 1
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH----HHHcCCeEEE
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY----AQENGLSFLE 151 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 151 (178)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.... .+....+ .....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 12467889999999999987665543 23333333 36889999999998643211 1111111 1223479999
Q ss_pred EeCCCCCCHHHHHHHHHhhcccc
Q 030364 152 TSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+||++|.|++++++.+.+....+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998866544
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=1e-21 Score=148.66 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=103.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC---------------------------ccCceeeeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF---------------------------QESTIGAAFFTQVLSLNE 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 56 (178)
.+.+.++|+++|+.++|||||+.+|+. +..... .+...+.+.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 356789999999999999999999986 221110 011123333333344455
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHH--HHHHHHHHhCCCCceEEEEEeCCCCccccc--
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK--KWVQELQRQGNPNLIMFLVANKVDLEEKRK-- 132 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-- 132 (178)
..+.+.+||+||++.|.......+..+|++++|+|+++++++...+ .++. +... ....|++|++||+|+.+..+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~-~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LART-LGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHH-cCCCeEEEEEEChhccCccHHH
Confidence 5678899999999888776666778999999999999875432211 1112 2222 22357899999999864211
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Q 030364 133 --VKNEEGELYAQENG-----LSFLETSAKSAHNVNE 162 (178)
Q Consensus 133 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (178)
....+...+++..+ ++++++||++|.|+++
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 11234455555554 6899999999999986
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.9e-21 Score=153.27 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=103.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPM 78 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~ 78 (178)
....+|+++|.+|+|||||+|+|++..... ...+..+.+.......+++ ..+.+|||||... +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 345789999999999999999999765321 1223333333333334444 4678999999653 2334455
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
++..+|++++|+|+++.-.... ..+...+.. .+.|+++|+||+|+.... ......+....+ ..+++||++|.
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~ 422 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR 422 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence 7889999999999986422111 233344433 478999999999985421 112222222222 45789999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
|+++++++|++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988753
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=4.9e-21 Score=152.69 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=108.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhccc-
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLA- 76 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~- 76 (178)
..++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.. .+....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999987642 1223333344444555666654 5599999953 122221
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCeEEEE
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLET 152 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~ 152 (178)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+..... .....+... ...+++.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~~-~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRRQ-RLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHHH-HHHHHHHHhccCCCCCCEEEE
Confidence 23468899999999999887776654 3333433 468999999999986532211 111111111 13578999
Q ss_pred eCCCCCCHHHHHHHHHhhcccc
Q 030364 153 SAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
||++|.|++++++.+.+.+..+
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=4e-20 Score=129.43 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d 84 (178)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998653222222222333344445555 567899999974322 12345688999
Q ss_pred EEEEEEECCCHh-HHHHHHHHHHH-----------------------------------------HHHh-----------
Q 030364 85 AAVVVYDITSMD-SFERAKKWVQE-----------------------------------------LQRQ----------- 111 (178)
Q Consensus 85 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~----------- 111 (178)
++++|+|+++++ ....+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 33333222211 0000
Q ss_pred -----------C--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364 112 -----------G--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 112 -----------~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~ 176 (178)
. ....|+++|+||+|+.. .++...+++ ..+++++||++|.|++++++.|.+.+.-.|.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~~irv 230 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLGLIRV 230 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhCcEEE
Confidence 0 12468999999999854 233334444 3468999999999999999999998876553
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=9.5e-21 Score=146.89 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----ceeeeEEEEEEE------------eCCeEEEEEEEeCCCchhhh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS------------LNEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~d~~g~~~~~ 73 (178)
..-|+++|++++|||||+++|.+..+...... +.+......... +......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998766432211 111111111100 00111237899999999999
Q ss_pred ccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc------------CHHH-
Q 030364 74 SLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV------------KNEE- 137 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~------------~~~~- 137 (178)
.++..++..+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+...... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999989999999999999997 44444432 2222 36899999999998632110 0000
Q ss_pred -----------HHHHHH------------Hc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 138 -----------GELYAQ------------EN--GLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 138 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
...+.. .+ .++++++||++|+|+++++.+|....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 001111 11 36899999999999999999886533
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=5.2e-21 Score=144.90 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--C---------------------------CccCceeeeEEEEEEEeCCe
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D---------------------------FQESTIGAAFFTQVLSLNEV 57 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (178)
+++.++|+++|++++|||||+++|+...-. . ..+...+.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456899999999999999999999843210 0 00112333444444445555
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccc----
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK---- 132 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---- 132 (178)
.+.+.+||+||++.|.......+..+|++++|+|++++..+.. ....+..+... ...|+++++||+|+.+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 6788999999998876655556788999999999997312211 12222223222 2246899999999864211
Q ss_pred cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364 133 VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL 163 (178)
Q Consensus 133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (178)
...++...+....+ ++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 11223344444444 57999999999999873
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=121.68 Aligned_cols=160 Identities=23% Similarity=0.289 Sum_probs=115.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------ccC--ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------QES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
..+....||+|.|+.++||||+++.+........ ... ..+.........+++ ...+.++++|||++|..
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHH
Confidence 4455688999999999999999999987653111 111 011111111222233 25678999999999999
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-H-cCCeEEEE
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-E-NGLSFLET 152 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 152 (178)
+|..+.+++.++|+++|.+.+..+ .....++.+..... .|++|++||.|+..+... ++..+..+ . ...++++.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~pp--e~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALPP--EKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCCH--HHHHHHHHhccCCCceeee
Confidence 999999999999999999998877 44455555554422 899999999999886554 33333333 3 37899999
Q ss_pred eCCCCCCHHHHHHHHHhh
Q 030364 153 SAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~ 170 (178)
+|..+++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998877654
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.86 E-value=8.2e-21 Score=147.76 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--cCCCCc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 76 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 76 (178)
.+|+++|+.++|||||+++|+.. .+.... +...+.+.......+....+++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 222211 1222344444444444455788899999999999888
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHH------HHcCCe
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYA------QENGLS 148 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~------~~~~~~ 148 (178)
..+++.+|++++|+|+.+. .......++..+... +.|+++++||+|+.+.+. +..+....+. +...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999999874 234445565665543 678999999999865332 2212222222 224578
Q ss_pred EEEEeCCCCC----------CHHHHHHHHHhhcccc
Q 030364 149 FLETSAKSAH----------NVNELFYEIGDCTECF 174 (178)
Q Consensus 149 ~~~~Sa~~~~----------~i~~~~~~l~~~i~~~ 174 (178)
++.+||++|. |++.+|+.|++.+...
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999995 8999999999887654
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=1.2e-20 Score=141.95 Aligned_cols=164 Identities=17% Similarity=0.139 Sum_probs=106.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccC--ceeeeEEE----------------EEEEeCC------eEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQES--TIGAAFFT----------------QVLSLNE------VTIK 60 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~--~~~~~~~~----------------~~~~~~~------~~~~ 60 (178)
++.++|+++|++++|||||+++|.+..... +... +....+.. .....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 568999999999999999999997532211 1110 01111000 0000011 1367
Q ss_pred EEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHH
Q 030364 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG 138 (178)
Q Consensus 61 ~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~ 138 (178)
+.+||+||++.|...+......+|++++|+|++++.........+..+... ...|+++++||+|+.+..... .++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 889999999999888888888899999999999643112223333333322 234689999999986532211 1222
Q ss_pred HHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 139 ELYAQEN---GLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 139 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
..+.... +++++++||++|.|+++++++|...+..
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 3333322 5789999999999999999999986653
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=2.8e-20 Score=124.06 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhccchhhhc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAPMYYR 81 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~~~ 81 (178)
.|+++|.+|+|||||++.+.++.......++.+.+........++ .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999997666555555555554444444443 77899999943 23333334443
Q ss_pred ---CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHH--HcCCeEEEEeC
Q 030364 82 ---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQ--ENGLSFLETSA 154 (178)
Q Consensus 82 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa 154 (178)
..+++++++|..+..+... ....+.+... +.|+++++||+|+....... ........+ ....+++++|+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 3578899999986532211 1122223222 57899999999985432211 112222222 34468999999
Q ss_pred CCCCCHHHHHHHHHhhc
Q 030364 155 KSAHNVNELFYEIGDCT 171 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i 171 (178)
+++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 154 LKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.86 E-value=4.5e-20 Score=143.59 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=116.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
...+|+++|+.++|||||+++|+. +.+... .....+.+.......+....+++.+||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 367999999999999999999987 333221 123445555566666666678999999999999999
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHH-------HHcC
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENG 146 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~ 146 (178)
.+..+++.+|++++|+|+.+.... ....++..+.. .+.|.++++||+|+...+... .++...+. ....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999875322 22333344333 367889999999986533211 11222221 1234
Q ss_pred CeEEEEeCCCCC----------CHHHHHHHHHhhcccc
Q 030364 147 LSFLETSAKSAH----------NVNELFYEIGDCTECF 174 (178)
Q Consensus 147 ~~~~~~Sa~~~~----------~i~~~~~~l~~~i~~~ 174 (178)
+|++.+||++|. |+..+++.|++.+-..
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 789999999998 6899999998877544
No 205
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.86 E-value=1.9e-20 Score=140.71 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=105.3
Q ss_pred cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEE--EEE----------------EeC--C----
Q 030364 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFT--QVL----------------SLN--E---- 56 (178)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~--~---- 56 (178)
+...++.++|+++|+.++|||||+.+|.+.... .+.....+..... ... ..+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 345667899999999999999999999653111 1111111111100 000 000 0
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-- 134 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-- 134 (178)
....+.+||+||++.|..........+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHH
Confidence 1357899999999888776555666789999999999643111111222223222 224689999999986533221
Q ss_pred HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.++...+.+. .+++++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1223333332 24789999999999999999999987654
No 206
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-23 Score=135.32 Aligned_cols=168 Identities=33% Similarity=0.548 Sum_probs=143.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-EEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..-++++|+|..|+|||+++.+.....+..++..+.+.+...+...++.. .+++++||..|++++..+..-+++.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 44679999999999999999999999998889999999888887777654 47789999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccC-HHHHHHHHHHcCC-eEEEEeCCCCCCH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGL-SFLETSAKSAHNV 160 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (178)
++|||+++.-.|+.+..|.+.+.... ..-.|+++++||||........ ......+++++++ .++++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999999886643 2346789999999986533222 3567788888986 7999999999999
Q ss_pred HHHHHHHHhhccccc
Q 030364 161 NELFYEIGDCTECFS 175 (178)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (178)
+|+-..|++.+..-+
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999876543
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=1.7e-20 Score=129.49 Aligned_cols=150 Identities=21% Similarity=0.183 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCC-----------------------------ccCceeeeEEEEEEEeCCeEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF-----------------------------QESTIGAAFFTQVLSLNEVTIKFD 62 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (178)
||+++|++|+|||||+++|+...-.-. .+...+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975321100 000022222222233333445778
Q ss_pred EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc----CHHHH
Q 030364 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----KNEEG 138 (178)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~ 138 (178)
+|||||+..|.......+..+|++++|+|++++..- ........+... ...++++|+||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988876666778999999999999875321 112222222222 12357778999998642211 11233
Q ss_pred HHHHHHcC---CeEEEEeCCCCCCHHHHH
Q 030364 139 ELYAQENG---LSFLETSAKSAHNVNELF 164 (178)
Q Consensus 139 ~~~~~~~~---~~~~~~Sa~~~~~i~~~~ 164 (178)
..+.+..+ .+++.+||++|.|+++..
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 44445555 459999999999997543
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=1.5e-19 Score=123.20 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=98.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
+.++|+++|+.++|||||+++|++.... ...+...+.+.......+.....++.++||||+..|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3689999999999999999999864100 00111233344444444555556788999999998887
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC---HHHHHHHHHHc-----
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQEN----- 145 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~----- 145 (178)
.....+..+|++++|+|+..+-. ......+..+... +.| +++++||+|+....+.. ..+...+....
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77788899999999999986422 2223334444433 455 67889999985322211 12233333333
Q ss_pred CCeEEEEeCCCCCCH
Q 030364 146 GLSFLETSAKSAHNV 160 (178)
Q Consensus 146 ~~~~~~~Sa~~~~~i 160 (178)
+++++.+||++|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 368999999999874
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=4.8e-20 Score=129.17 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC--------C-----Cc---cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF--------D-----FQ---ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (178)
+|+++|++|+|||||+++|+...-. . .+ ....+.+.......+....+++.+||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863210 0 00 111222333334444445578899999999999888
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+..+++.+|++++|+|+++.... ....++..+... +.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 88899999999999999986433 334455555443 68899999999975
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.9e-20 Score=136.90 Aligned_cols=150 Identities=16% Similarity=0.112 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------ccchhhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYY 80 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~ 80 (178)
..|+++|.||+|||||+|+|++.+.. -...|..+.+.......+.+. .|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987653 223344444555555555554 47899999965322 2345678
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN 159 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 159 (178)
..||+++||+|....-+-.. ....+.+. ..++|+++|+||+|-... .+..-+|.. +| -+.+.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~efys-lG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEFYS-LGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHHHh-cCCCCceEeehhhccC
Confidence 89999999999997543222 12223333 246899999999996421 122233333 44 4899999999999
Q ss_pred HHHHHHHHHhhc
Q 030364 160 VNELFYEIGDCT 171 (178)
Q Consensus 160 i~~~~~~l~~~i 171 (178)
+.++++++++.+
T Consensus 153 i~dLld~v~~~l 164 (444)
T COG1160 153 IGDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHhhc
Confidence 999999999886
No 211
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=4.3e-20 Score=136.31 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=110.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (178)
..++++++|.||+|||||+|.|.+.... -...+.++.++....+.++| +.+.+.||.|..+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4789999999999999999999976532 22445555566666667777 55669999997654443 2345
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
++.+|.+++|+|.+.+.+-+.. ..+. ....+.|+++|.||.|+..+...... .-..+.+++.+|+++|+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 7899999999999985222221 1111 33467899999999999765442211 112345899999999999
Q ss_pred HHHHHHHHHhhcccc
Q 030364 160 VNELFYEIGDCTECF 174 (178)
Q Consensus 160 i~~~~~~l~~~i~~~ 174 (178)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998876543
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.84 E-value=2.3e-19 Score=139.70 Aligned_cols=155 Identities=22% Similarity=0.238 Sum_probs=100.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----ceeeeEEEEEEE--eCCeE-----E-----EEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS--LNEVT-----I-----KFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~d~~g~~~~ 72 (178)
+...|+++|++++|||||+++|.+......... +.+.+....... ..+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 455799999999999999999986544322211 112111111100 00111 1 2679999999999
Q ss_pred hccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC---------------
Q 030364 73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--------------- 134 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--------------- 134 (178)
..++...+..+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+.......
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888899999999999997 55555443 2222 478899999999985211100
Q ss_pred -HH--------HHHHHHH------------H--cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 135 -NE--------EGELYAQ------------E--NGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 135 -~~--------~~~~~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
.. ....+.. . ..++++++||++|.|+++++..+...
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 0001110 0 13689999999999999999887643
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=2.6e-19 Score=140.03 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc---CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
-|.++|+.++|||||+++|++.. +.++.....+.+.........+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 57899999999999999998632 2222323333333222232222 2347899999999998777777899999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQENG---LSFLETSAKSAHNVNE 162 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (178)
|+|++++-. ......+..+... +.| ++||+||+|+.+..... .++...+....+ .+++++||++|.|+++
T Consensus 81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999987321 1122222333322 344 57899999986532221 223334444333 6899999999999999
Q ss_pred HHHHHHhhcc
Q 030364 163 LFYEIGDCTE 172 (178)
Q Consensus 163 ~~~~l~~~i~ 172 (178)
++++|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987554
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=1.7e-19 Score=125.02 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCc-----------------cCceeeeEEEEEE--Ee---CCeEEEEEEEeCCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------------ESTIGAAFFTQVL--SL---NEVTIKFDIWDTAGQ 69 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~ 69 (178)
+|+++|+.++|||||+++|+........ ....+.+...... .+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 0111112111111 11 355688999999999
Q ss_pred hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-cCH-----------HH
Q 030364 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKN-----------EE 137 (178)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~-----------~~ 137 (178)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+..... ... ++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9988888888999999999999987665433 233333332 3589999999999742110 000 11
Q ss_pred HHHHHHHcC-------Ce----EEEEeCCCCCCHH--------HHHHHHHhhcc
Q 030364 138 GELYAQENG-------LS----FLETSAKSAHNVN--------ELFYEIGDCTE 172 (178)
Q Consensus 138 ~~~~~~~~~-------~~----~~~~Sa~~~~~i~--------~~~~~l~~~i~ 172 (178)
....+...+ +| +++.|++.+.++. ++++.|.+.+-
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 122222222 22 7788999998776 77777766553
No 215
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.83 E-value=1.9e-19 Score=124.61 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhc-----cchhhhcCCcE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHS-----LAPMYYRGAAA 85 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d~ 85 (178)
||+++|+.+|||||+.+.++++..+... ...+.+.......+ -...+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999998876544322 22222222222222 12246888999999865544 35677899999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHH--hCCCCceEEEEEeCCCCccccccC------HHHHHHHHHHcC---CeEEEEeC
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENG---LSFLETSA 154 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~---~~~~~~Sa 154 (178)
+|+|+|+.+.+..+.+..+...+.. ...++..+.|+++|+|+..+.... .+.....+...+ +.++.||.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999999955555555544444333 226899999999999985422111 112222333444 78999999
Q ss_pred CCCCCHHHHHHHHHhhc
Q 030364 155 KSAHNVNELFYEIGDCT 171 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i 171 (178)
.+ +.+-++|..+++.+
T Consensus 160 ~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp TS-THHHHHHHHHHHTT
T ss_pred cC-cHHHHHHHHHHHHH
Confidence 99 69999999999875
No 216
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-19 Score=125.42 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=105.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh------hh------
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER------YH------ 73 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~------~~------ 73 (178)
+..+.++|+|+|.||+|||||.|.+.+.+..+...... ++.....-.+.....++.|+||||.-. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~-TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH-TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc-ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34578999999999999999999999988776433333 333344444445567899999999411 11
Q ss_pred ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-------------cCH--HH-
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-------------VKN--EE- 137 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-------------~~~--~~- 137 (178)
......+..+|.+++++|+++....-. .+.+..+..+ .+.|-++|+||.|...+.. +.. .+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 122345678999999999996221111 1223334333 4677899999999754221 111 01
Q ss_pred HHHHHH---------HcCC----eEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 138 GELYAQ---------ENGL----SFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 138 ~~~~~~---------~~~~----~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
...+.. ..++ .+|.+||++|+|++++.++|..+..
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 111111 0112 4899999999999999999988754
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.9e-19 Score=117.43 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=113.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 76 (178)
++....|+++|.+|+|||||+|+|++.+.....+.++|.+.....+.+++. +.+.|.||. +.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345779999999999999999999998866667888888888888888775 669999994 2333444
Q ss_pred hhhhcC---CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCe-
Q 030364 77 PMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLS- 148 (178)
Q Consensus 77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~- 148 (178)
..|++. ..++++++|+..+-.-... .+++-+.. .+.|++|++||+|.....+... .....++. ....
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCccc
Confidence 455543 4688999999875433221 33333333 4889999999999876544321 11222222 2222
Q ss_pred -EEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 149 -FLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 149 -~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
++..|+.++.|++++...|.+.+..
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhc
Confidence 7889999999999999999987764
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.83 E-value=3.9e-19 Score=133.24 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=109.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
...++.++|+++|+.++|||||+++|++.... ...+...+.+.......+......+.++|+||++
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 34567899999999999999999999863110 0011123334444444554455677899999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC---HHHHHHHHHHcC
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQENG 146 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 146 (178)
+|.......+..+|++++|+|+.+... ......+..+... +.| +++++||+|+.+..+.. .++...+.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 887777777788999999999986422 1222333334333 566 67889999986433221 123334444443
Q ss_pred -----CeEEEEeCCCCC--------CHHHHHHHHHhhcc
Q 030364 147 -----LSFLETSAKSAH--------NVNELFYEIGDCTE 172 (178)
Q Consensus 147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~i~ 172 (178)
++++++||++|. ++.++++.|.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 67888888887664
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=8e-20 Score=127.03 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC--C---------------------------CCccCceeeeEEEEEEEeCCeEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEVTIKFD 62 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (178)
+|+++|++++|||||+.+|+...- . ...+...+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864211 0 00011122223333333434457788
Q ss_pred EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cc-
Q 030364 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KV- 133 (178)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~- 133 (178)
+||+||+..+.......+..+|++++|+|+++... .......+...... ...|+++++||+|+.... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998887766777788999999999998521 11122222222222 236789999999987321 10
Q ss_pred ---CHHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364 134 ---KNEEGELYAQEN-----GLSFLETSAKSAHNVNE 162 (178)
Q Consensus 134 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (178)
..++...+.... .++++++||++|.|+++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 011222223333 36799999999999873
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=3.8e-19 Score=113.39 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----hhhhccchhhhcCCcEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~d~~i 87 (178)
||+++|+.|||||||+++|.+.... +..|.... + .=.++||||. ..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 8999999999999999999876542 22332211 1 1136999994 333333344567899999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (178)
++.|++++.+.-. ..+... -..|++=|+||+|+... ....+....+.+.-|+ ++|.+|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998653211 111111 25789999999999732 2234566667777776 6799999999999999998
Q ss_pred HH
Q 030364 167 IG 168 (178)
Q Consensus 167 l~ 168 (178)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 75
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.82 E-value=9.4e-19 Score=131.28 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhC-------cCC-------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG-------QFF-------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
....+.++|+++|++++|||||+++|++. .+. ...+...+.+.......+.....++.|+|+||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 44567999999999999999999999862 100 0011123333334444444445677899999998
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHc-
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN- 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~- 145 (178)
.|.......+..+|++++|+|+.+... .....++..+.. .+.|.+ +++||+|+.+..+.. ..+...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 887766677889999999999987432 222233333333 356755 579999986422211 12334444443
Q ss_pred ----CCeEEEEeCCCCC----------CHHHHHHHHHhhcc
Q 030364 146 ----GLSFLETSAKSAH----------NVNELFYEIGDCTE 172 (178)
Q Consensus 146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 172 (178)
+++++++||++|. ++.++++.|.+.+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 2689999999984 67888888877653
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=6.7e-19 Score=132.12 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=104.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCc-------C-----CC--CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------F-----FD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~-------~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.+.++.++|+++|+.++|||||+++|++.. . .. ..+...+.+.......+.....++.+||+||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 345679999999999999999999997420 0 00 011223334444455555556778899999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHcC
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG 146 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~ 146 (178)
+|..........+|++++|+|+.++... .....+..+... +.|.+ +++||+|+.+..+.. .++...+....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8877666667788999999999874221 122333334333 55655 689999986533221 123445555544
Q ss_pred -----CeEEEEeCCCCC--------CHHHHHHHHHh
Q 030364 147 -----LSFLETSAKSAH--------NVNELFYEIGD 169 (178)
Q Consensus 147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~ 169 (178)
++++++||++|. ++.+++++|.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 789999999874 34455555544
No 223
>COG2262 HflX GTPases [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=125.39 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=117.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLA 76 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~ 76 (178)
.+.....|.++|..|+|||||+|.|++........-..+.+.....+.+.+ ...+.+.||.|.- .|.+.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT- 265 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST- 265 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-
Confidence 345578999999999999999999997665544444445555566666665 3466799999942 12211
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
-.-...+|+++.|+|++++...+.+......+......+.|+++|.||.|+..... .......... ..+.+||++
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~ 340 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKT 340 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEecc
Confidence 12246799999999999998888888888888887677899999999999754333 1111111112 589999999
Q ss_pred CCCHHHHHHHHHhhccc
Q 030364 157 AHNVNELFYEIGDCTEC 173 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~~ 173 (178)
|.|++.+.+.|.+.+..
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998774
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-18 Score=132.18 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhh--c
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--R 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~ 81 (178)
..+|+++|+||+|||||+|+|++....- ..-.|.++..++.........+++.|.||.-.... ....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 5679999999999999999999865432 22234444444444433334577999999532222 223333 4
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.+|++|-|+|+++-+- --.+-.++.+. +.|++++.|++|.....-+ ......+.+.+|+|++++||++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeR---nLyltlQLlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLER---NLYLTLQLLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHH---HHHHHHHHHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5799999999998542 11222333333 7789999999998664433 355677888899999999999999999
Q ss_pred HHHHHHHhhcc
Q 030364 162 ELFYEIGDCTE 172 (178)
Q Consensus 162 ~~~~~l~~~i~ 172 (178)
+++.++.+..+
T Consensus 154 ~l~~~i~~~~~ 164 (653)
T COG0370 154 ELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHhcc
Confidence 99999986544
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=3.1e-18 Score=119.03 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCc-----------------------eeeeEEEEE-------------EEeC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-----------------------IGAAFFTQV-------------LSLN 55 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 55 (178)
||+++|+.++|||||++++..+.+....... .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976553211100 000000000 0111
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (178)
.....+.++|+||++.|.......+. .+|++++|+|+..+.. .....++..+... +.|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 12356789999999888765554454 6899999999886532 2223344444433 5789999999998543222
Q ss_pred CH--HHHHHHHH--------------------------HcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 134 KN--EEGELYAQ--------------------------ENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 134 ~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
.. .+...+.. ...+|++.+||.+|+|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11 11111211 11248999999999999999987754
No 226
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=127.66 Aligned_cols=159 Identities=21% Similarity=0.185 Sum_probs=107.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE--EEEEEeCCeEEEEEEEeCCCchhh----------hc-c
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF--TQVLSLNEVTIKFDIWDTAGQERY----------HS-L 75 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~----------~~-~ 75 (178)
..+||+++|.||+|||||+|++++.+-.- ..+..+++.. ...+.+++. ++.++||.|...- .. -
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehh
Confidence 46999999999999999999999765321 3344444444 444455564 4569999995322 11 1
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEE
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFL 150 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~ 150 (178)
....+..+|++++|+|++.+-+-... +....+.. .+.++++|+||.|+.+......++.....+ -..++++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence 23457789999999999987654442 22233333 477899999999987653333333222221 1236999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
.+||++|.++..+|+++.+....+
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHh
Confidence 999999999999999998876654
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=4e-18 Score=119.99 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhhhcC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRG 82 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~ 82 (178)
..|.++|.||+|||||++++...+.. ..|..| +.....-.+.+++. ..+.+-|.||.-+-.++ .-..++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFT-TL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT-TLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCccccccee-eeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 36789999999999999999986653 223222 22222233444443 34889999996322221 2233577
Q ss_pred CcEEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364 83 AAAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 83 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
++.++||+|++.+ ..|+.++.+..++..+. ..+.|.++|+||+|++++.. .....+.+...- .++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999988 88888888887776543 57899999999999863221 123455555554 499999999
Q ss_pred CCCHHHHHHHHHhh
Q 030364 157 AHNVNELFYEIGDC 170 (178)
Q Consensus 157 ~~~i~~~~~~l~~~ 170 (178)
++|+.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999888654
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.80 E-value=6.6e-18 Score=127.22 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=99.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
..+.+.++|+++|++++|||||+++|++.... ...+...+.+.......+.....++.++|+||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 34567899999999999999999999864110 0011123333433344444445677899999998
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHcC
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG 146 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~ 146 (178)
.|.......+..+|++++|+|+..... ......+..+... +.| +++++||+|+.+..+... .+...+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777889999999999986432 2223333444333 567 678899999865332211 23333444332
Q ss_pred -----CeEEEEeCCCCC
Q 030364 147 -----LSFLETSAKSAH 158 (178)
Q Consensus 147 -----~~~~~~Sa~~~~ 158 (178)
++++.+||.+|.
T Consensus 163 ~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 163 FPGDDIPIVSGSALLAL 179 (409)
T ss_pred CCCCcceEEEcchhhcc
Confidence 689999999886
No 229
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.1e-17 Score=125.47 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=107.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
....+.++|+++|+.++|||||+++|++.... ...+...+.+.......+.....++.++|+||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 34567999999999999999999999863110 0011123334444444454445677899999998
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHc-
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN- 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~- 145 (178)
.|.......+..+|++++|+|+.++.. ......+..+... +.|.+ +++||+|+.+..+.. ..+...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887777777889999999999987432 2223334444433 56765 579999986422211 11222333322
Q ss_pred ----CCeEEEEeCCCCC----------CHHHHHHHHHhhcc
Q 030364 146 ----GLSFLETSAKSAH----------NVNELFYEIGDCTE 172 (178)
Q Consensus 146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 172 (178)
+++++.+||++|. ++.++++.|.+.+.
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 3689999999875 57788888877553
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.79 E-value=9.6e-18 Score=127.73 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=98.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCc------CCC--------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ------FFD--------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
..+.+.++|+++|++++|||||+++|+... ... ..+...+.+.......+......+.++|+||++
T Consensus 76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 345678999999999999999999998521 100 012223333333333343344577899999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHc-
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN- 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~- 145 (178)
+|.......+..+|++++|+|+.+... ....+++..+... +.| +++++||+|+.+..+... ++...+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 998877777889999999999997532 2223444444433 566 678899999865322211 2333343332
Q ss_pred ----CCeEEEEeCCCCC
Q 030364 146 ----GLSFLETSAKSAH 158 (178)
Q Consensus 146 ----~~~~~~~Sa~~~~ 158 (178)
+++++.+|+.+|.
T Consensus 232 ~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 232 FPGDDIPIISGSALLAL 248 (478)
T ss_pred CCcCcceEEEEEccccc
Confidence 4689999998874
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1.9e-17 Score=117.98 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCc-------------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQ-------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.+|+++|++|+|||||+++|+...-. ... ....+.+.......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 58999999999999999999853110 000 0011223334444555566888999999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 130 (178)
+|.......++.+|++++|+|+++.... ....++..... .+.|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8887777788999999999999875321 22333333322 36899999999998654
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=1e-17 Score=126.99 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=103.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcC--CC---------------------------CccCceeeeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNE 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (178)
.+.+.++|+++|+.++|||||+.+|+...- .. ..+...+.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 356789999999999999999998875211 00 0111122233334444555
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHH-------HHHHHHHHHHHhCCCCc-eEEEEEeCCCCc
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE-------RAKKWVQELQRQGNPNL-IMFLVANKVDLE 128 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~ 128 (178)
..+.+.++|+||+++|.......+..+|++|+|+|+++. .++ ...+.+...... +. +++|++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 567888999999999999888899999999999999973 232 333333333332 45 468889999975
Q ss_pred ccc------ccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Q 030364 129 EKR------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNE 162 (178)
Q Consensus 129 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (178)
... ....++...+++..+ ++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 011234555555555 6899999999999853
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2e-17 Score=117.21 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc-----hhhhcc---c-hhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----ERYHSL---A-PMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-----~~~~~~---~-~~~ 79 (178)
....|+|.|.||+|||||+++++..+..-..-|.++...+...+..++ ..++++||||. ++.+.. . .+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 467899999999999999999998776543444444444444444444 56779999994 111111 1 111
Q ss_pred hcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364 80 YRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
-.-.++++|+||.+. .-+.+....++.++..... .|+++|+||+|..+.......+.. +....+.....+++..+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKG 321 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeeh
Confidence 223678999999995 4567777788888887743 899999999998765544333322 33334445788999999
Q ss_pred CCHHHHHHHHHhh
Q 030364 158 HNVNELFYEIGDC 170 (178)
Q Consensus 158 ~~i~~~~~~l~~~ 170 (178)
.+++.+-..+...
T Consensus 322 ~~~d~~~~~v~~~ 334 (346)
T COG1084 322 CGLDKLREEVRKT 334 (346)
T ss_pred hhHHHHHHHHHHH
Confidence 9999887776665
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.77 E-value=1.5e-17 Score=115.19 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC--CCc------------cCceeeeE--EEEEEEeC--------CeEEEEEEEeCC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQ------------ESTIGAAF--FTQVLSLN--------EVTIKFDIWDTA 67 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~--~~~------------~~~~~~~~--~~~~~~~~--------~~~~~~~i~d~~ 67 (178)
+|+++|+.++|||||+.+|+...-. ... +...+.+. ......+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864311 000 00011111 11112222 447889999999
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
|+..|......+++.+|++++|+|+.++..... ...+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999999999999999999999998654443 222333322 357899999999975
No 235
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.2e-18 Score=110.25 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=116.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.=|++++|..|+|||||++.|..++... +.||.-. ......+.+ .+++-+|.+|+...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHP--TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCC--ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 45689999999999999999998776533 2232221 122334444 678899999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHH------HHHHc--------C---CeEE
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL------YAQEN--------G---LSFL 150 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~------~~~~~--------~---~~~~ 150 (178)
.+|+.|.+-+.+.+..++.+.... ....|+++++||.|.+.+. .+++.+. ++-.. + +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999998887777765543 5789999999999987654 2222211 11111 1 2568
Q ss_pred EEeCCCCCCHHHHHHHHHhhc
Q 030364 151 ETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i 171 (178)
-||...+.|--+.|.|+.+.+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 899999999888888887755
No 236
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=1.4e-17 Score=118.72 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC--CC--------------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (178)
+|+++|++++|||||+++|+...- .. ..+...+.+.......+....+++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999975211 00 00111222333333333334567889999999888888
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+..+++.+|++++|+|+.+...-. ....+..+.. .+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~ 129 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCC
Confidence 888999999999999998743211 2233344433 367899999999975
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.77 E-value=9.2e-18 Score=128.20 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=96.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC-----------c------------------cCceeeeEEEEEEEe
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF-----------Q------------------ESTIGAAFFTQVLSL 54 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~ 54 (178)
..+..++|+++|++++|||||+.+|+...- ... . +...+.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346689999999999999999999975421 100 0 000111222223333
Q ss_pred CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC
Q 030364 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK 134 (178)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (178)
.....++.|+|+||+..|.......+..+|++++|+|+..+..-. ....+..+.... ..|+++++||+|+.+..+..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 344567889999999888766666679999999999998642211 111112222221 24688999999986432211
Q ss_pred HH----HHHHHHHHc----CCeEEEEeCCCCCCHHHH
Q 030364 135 NE----EGELYAQEN----GLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 135 ~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 163 (178)
.+ +...+.+.. .++++++||++|.|+++.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11 122223322 378999999999998764
No 238
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.77 E-value=3.8e-17 Score=116.94 Aligned_cols=143 Identities=13% Similarity=0.169 Sum_probs=92.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---- 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---- 74 (178)
..++|+|+|.+|+|||||+|+|++..+... ..++.+.......+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998876543 233444445555566677788999999999432111
Q ss_pred ----------------------cchhhhc--CCcEEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 75 ----------------------LAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+...+. .+|+++++++.+... +... ...++.+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 1112223 367888888876421 1111 22233332 2688999999999855
Q ss_pred ccc--cCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 130 KRK--VKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
..+ .......+.++.++++++......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 332 233445666777888888776543
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=2.3e-17 Score=127.08 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=80.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh--CcCCC------------------CccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD------------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 67 (178)
....+|+++|++++|||||.++|+. +.... ......+.........+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4577999999999999999999974 11100 000111222333334444455788899999
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
|+..|......++..+|++|+|+|+++... .....++..... .+.|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 999988877788999999999999987532 223333333332 478999999999975
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.76 E-value=3.2e-17 Score=124.24 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=104.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhC------cCC------C--CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG------QFF------D--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~------~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
....+.++|+++|+.++|||||+++|.+. ... . ..+...+.+.......+.....++.++|+||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34567899999999999999999999731 100 0 011123334444444555555678899999998
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHc-
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN- 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~- 145 (178)
.|.......+..+|++++|+|+.+... ......+..+... +.| +++++||+|+.+..+... .+...+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 887766666778999999999986432 2223333444333 567 467899999864322111 1222222221
Q ss_pred ----CCeEEEEeCC---CCCC-------HHHHHHHHHhhcc
Q 030364 146 ----GLSFLETSAK---SAHN-------VNELFYEIGDCTE 172 (178)
Q Consensus 146 ----~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i~ 172 (178)
.++++.+|+. +|.| +.+++++|.+.+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3688888875 4554 7788888877654
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=5.3e-18 Score=127.60 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=121.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
....+.+||+++|..|+|||||+-.+...++.+...+.......+....-+ .+...+.|++..++-+.....-++.+|
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcC
Confidence 344568999999999999999999999999877655444332222222222 344679999876655555566789999
Q ss_pred EEEEEEECCCHhHHHHHH-HHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHH-HHHHHHHc-CC-eEEEEeCCCCC
Q 030364 85 AAVVVYDITSMDSFERAK-KWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEE-GELYAQEN-GL-SFLETSAKSAH 158 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~-~~~~~Sa~~~~ 158 (178)
+++++|+.+++++++.+. .|+..+++.. ..+.|+|+|+||+|.........+. ...+...+ .+ .+++|||++-.
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 999999999999999986 5556666554 2689999999999986544332222 22222222 23 68999999999
Q ss_pred CHHHHHHHHHhhcccc
Q 030364 159 NVNELFYEIGDCTECF 174 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~~ 174 (178)
++.++|....+.+-++
T Consensus 162 n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 162 NVSELFYYAQKAVIHP 177 (625)
T ss_pred hhHhhhhhhhheeecc
Confidence 9999999887776654
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.76 E-value=4e-17 Score=123.85 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=100.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCc--CCC---------------------------CccCceeeeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNE 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (178)
.+.+.++|+++|+.++|||||+.+|+... ... ..+...+.+.......+..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 45678999999999999999999987621 100 0111122333334444555
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 129 (178)
....+.|+|+||+.+|.......+..+|++++|+|++++.- + ....+.+..+... +.| +++++||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 56788899999999998888888899999999999987531 1 2233333444433 444 678999999532
Q ss_pred --ccc----cCHHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364 130 --KRK----VKNEEGELYAQEN-----GLSFLETSAKSAHNVNE 162 (178)
Q Consensus 130 --~~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (178)
..+ ....+...+.... +++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 110 1112223333322 36899999999999864
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.75 E-value=5.9e-18 Score=121.13 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCcc----C-c-----------eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQE----S-T-----------IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 75 (178)
+|+++|++|+|||||+++|+......... . + .+.+.......+....+.+.+||+||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110000 0 0 011111222223333467889999999888888
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEE--e
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET--S 153 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--S 153 (178)
...++..+|++++|+|+++....... ..+..+.. .+.|.++++||+|..... .......+....+.+++.+ .
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 88889999999999999986544322 22333333 367899999999987542 1223334444455544443 3
Q ss_pred CCCCCCHHHHHHHH
Q 030364 154 AKSAHNVNELFYEI 167 (178)
Q Consensus 154 a~~~~~i~~~~~~l 167 (178)
..+|.++..+.+.+
T Consensus 155 ~~~~~~~~~~vd~~ 168 (268)
T cd04170 155 IGEGDDFKGVVDLL 168 (268)
T ss_pred ccCCCceeEEEEcc
Confidence 55555554444433
No 244
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=6.9e-17 Score=110.62 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=93.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee---eEEEEEEEeCCeEEEEEEEeCCCchhhhccc-----hhhhc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA---AFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----PMYYR 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----~~~~~ 81 (178)
.+||+++|.+|+|||||+|.+.+...........+. +.....+.... ...+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543322222221 11111111111 2367899999975332222 22256
Q ss_pred CCcEEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccc-------CHHH----HH-HHH---HHc
Q 030364 82 GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-------KNEE----GE-LYA---QEN 145 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-------~~~~----~~-~~~---~~~ 145 (178)
.+|+++++.+.. +... ..+++.+... +.|+++|+||+|+..+.+. ..++ .. ... ...
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 789988875422 2222 3444555443 5789999999998432110 0111 11 111 111
Q ss_pred C---CeEEEEeCC--CCCCHHHHHHHHHhhcccc
Q 030364 146 G---LSFLETSAK--SAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~i~~~ 174 (178)
+ -++|.+|+. .+.++..+.+.|+..+...
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 378999998 5789999999999887643
No 245
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.2e-16 Score=119.88 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=110.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+..=|.++|+..-|||||+..+-.......-.-..+.......+..+. ..-.+.|+|||||+.|..++..-..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999887666543333333333344444431 2346789999999999999998889999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH------HHHcC--CeEEEEeCCCCCC
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY------AQENG--LSFLETSAKSAHN 159 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~~ 159 (178)
+|++++|.--... .+.+......+.|++|++||+|.++.... ....++ ...++ ..++++||++|+|
T Consensus 84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~--~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPD--KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHH--HHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999998421111 12233333458999999999999853321 111111 11222 4899999999999
Q ss_pred HHHHHHHHHhhcccc
Q 030364 160 VNELFYEIGDCTECF 174 (178)
Q Consensus 160 i~~~~~~l~~~i~~~ 174 (178)
+++++..|.-..+.+
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887654433
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=3.3e-17 Score=123.30 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CC------------------------------ccCceeeeEEEEEEEeCCeEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DF------------------------------QESTIGAAFFTQVLSLNEVTI 59 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (178)
+||+++|+.++|||||+.+|+...-. .. .+...+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743210 00 000111122222233333446
Q ss_pred EEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC----H
Q 030364 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N 135 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~----~ 135 (178)
++.|+|+||++.|.......+..+|++++|+|+..+..- .....+..+.... ..++++++||+|+.+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 788999999998877666778999999999999864321 1122223333322 23588899999986422111 1
Q ss_pred HHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364 136 EEGELYAQENG---LSFLETSAKSAHNVNE 162 (178)
Q Consensus 136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (178)
++...+.+..+ ++++++||++|.|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222333333 5799999999999885
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=1.3e-16 Score=115.82 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=95.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCC------ccCceeeeEEEEE---------------EEeCC-eEEEEEEEeCCCc-
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQV---------------LSLNE-VTIKFDIWDTAGQ- 69 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~d~~g~- 69 (178)
|+++|.|++|||||++++++...... ..|..+....... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764321 2233332221110 00122 3467999999997
Q ss_pred ---hhhhccchh---hhcCCcEEEEEEECCC---------------H-hHHHHHHHHHHH------------HH------
Q 030364 70 ---ERYHSLAPM---YYRGAAAAVVVYDITS---------------M-DSFERAKKWVQE------------LQ------ 109 (178)
Q Consensus 70 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~~~~------------~~------ 109 (178)
+.+..+... .++.+|++++|+|++. + +.++.+...+.. +.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334443333 4899999999999973 1 112111110000 00
Q ss_pred --------------------------Hh----------------------CCCCceEEEEEeCCCCccccccCHHHHHHH
Q 030364 110 --------------------------RQ----------------------GNPNLIMFLVANKVDLEEKRKVKNEEGELY 141 (178)
Q Consensus 110 --------------------------~~----------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 141 (178)
.. ....+|+++++||.|+....+.. ..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~----~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNI----SKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHH----HHH
Confidence 00 02357999999999975432211 112
Q ss_pred -HHHcCCeEEEEeCCCCCCHHHHHH-HHHhhcc
Q 030364 142 -AQENGLSFLETSAKSAHNVNELFY-EIGDCTE 172 (178)
Q Consensus 142 -~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~i~ 172 (178)
......+++.+||+.+.+++++.+ .+.+.+-
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 222356899999999999999998 5888774
No 248
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.2e-16 Score=119.77 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=119.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC--CC-----------CccCceeeeEEEE---EEEeCCeEEEEEEEeCCCchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD-----------FQESTIGAAFFTQ---VLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~i~d~~g~~~ 71 (178)
++..++.|+-+-.-|||||..+|+...- .. ..+...+.+.... .+..++..+.++++||||+-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4567999999999999999999876221 00 0112222222221 222346779999999999999
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH-HHHHHHHHHcCCeEE
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-EEGELYAQENGLSFL 150 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (178)
|.......+..|+++++|+|++.+-.-..+..++..+. .+..+|.|+||.|++.++.-.. .+..++......+++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999998765555555555553 3667899999999987654222 223333333456899
Q ss_pred EEeCCCCCCHHHHHHHHHhhccccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
.+||++|.|+++++++|++.+-...
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCC
Confidence 9999999999999999999987553
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=8.5e-17 Score=128.46 Aligned_cols=119 Identities=19% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------C-----Ccc---CceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------D-----FQE---STIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------~-----~~~---~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.+...+|+|+|+.++|||||+++|+...-. . .+. ...+.+.......+....+.+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 345789999999999999999999853210 0 000 001112222222233345788999999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
++...+..+++.+|++++|+|+++.........| ..+.. .+.|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 9988889999999999999999987655543333 33333 3689999999999753
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4.8e-16 Score=110.01 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG 82 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~ 82 (178)
.-+++++|.|++|||||+++|++.+......+.++.+..+-.+.+++ .++++.|+||.-.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45899999999999999999998766544455555566667777777 567799999852211 223456789
Q ss_pred CcEEEEEEECCCHhH-HHHHHHHHHHH-----------------------------------------HHh---------
Q 030364 83 AAAAVVVYDITSMDS-FERAKKWVQEL-----------------------------------------QRQ--------- 111 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~--------- 111 (178)
||++++|+|+....+ .+.+.+.+... ..+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999996544 44443321110 000
Q ss_pred ---------------CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 112 ---------------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 112 ---------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
....+|.++|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|-+.+.-.|
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence 012578899999999865 23333333333 8999999999999999999998876554
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.73 E-value=1.6e-16 Score=120.46 Aligned_cols=166 Identities=12% Similarity=0.131 Sum_probs=105.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCcee--eeEEEE-------------EEEeCC-----------
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIG--AAFFTQ-------------VLSLNE----------- 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~--~~~~~~-------------~~~~~~----------- 56 (178)
..++.++|.++|+...|||||+.+|++-.... +.....+ ..+... ....+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34678999999999999999999999643211 1111000 000000 000000
Q ss_pred -----eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 57 -----VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 57 -----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
....+.|+|+||++.|.......+..+|++++|+|+.++.......+.+..+.... -.|+++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 02367899999999998877777889999999999997421222223333333222 24688999999986432
Q ss_pred ccC--HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 132 KVK--NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 132 ~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
... .++...+... .+.+++++||++|.|++++++.|.+.+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 221 1122222222 35799999999999999999999976654
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=3.2e-16 Score=120.89 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=82.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC-cCCCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDT 66 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 66 (178)
.....+|+++|++++|||||+++|+.. ..... .+...+.+.......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 355789999999999999999998631 11100 0111233344444555555688899999
Q ss_pred CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
||+..|.......+..+|++|+|+|+++.- ......+++.... .+.|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 999888877777889999999999998742 1223334433332 468999999999974
No 253
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1e-16 Score=114.11 Aligned_cols=162 Identities=19% Similarity=0.126 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-------cchhhhcCC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGA 83 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 83 (178)
-|.++|.|++|||||++++...+.. ..|..|+ ....--.+.. ...-.|.+-|.||.-+-.+ ..-..++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4678999999999999999986543 3333332 2222223333 2234577999999522111 122335678
Q ss_pred cEEEEEEECCCHh---HHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE-EeCCCC
Q 030364 84 AAAVVVYDITSMD---SFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE-TSAKSA 157 (178)
Q Consensus 84 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~ 157 (178)
.++++|+|++..+ ..+.......++..+. ..++|.+||+||+|+....+........+.+..++..+. +|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 8999999999543 4666666667776653 468999999999997655444444445555555543322 999999
Q ss_pred CCHHHHHHHHHhhccccc
Q 030364 158 HNVNELFYEIGDCTECFS 175 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~~~ 175 (178)
.|++++...+.+.+.+.+
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999998887654
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.2e-16 Score=116.45 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=104.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCc--CC---------------------------CCccCceeeeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FF---------------------------DFQESTIGAAFFTQVLSLNE 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 56 (178)
..+++++++++|+..+|||||+-+|+... +. ...+...+.+.......+.-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 45679999999999999999999887621 00 00122234444455555555
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---HHH--HHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
..+.+.++|+||+..|......-+..+|+.|+|+|+++.+. |.. ..+..-.+.+. .--..++|++||+|..+-+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccC
Confidence 56788999999999998888888899999999999998642 111 11222222222 2234478899999987632
Q ss_pred ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHH
Q 030364 132 KVKNE----EGELYAQENG-----LSFLETSAKSAHNVNELF 164 (178)
Q Consensus 132 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (178)
+-..+ +...+.+..+ ++|+++|+..|.|+.+.-
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 21111 2233444433 579999999999987643
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=126.02 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCC-C-C-----------cc------------------CceeeeEEEEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-D-F-----------QE------------------STIGAAFFTQVLSLN 55 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~-~-----------~~------------------~~~~~~~~~~~~~~~ 55 (178)
..+.++|+++|++++|||||+++|+...-. . . .. ...+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 445789999999999999999999863211 0 0 00 001111122222233
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-cC
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VK 134 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~ 134 (178)
....++.|+|+||++.|.......+..+|++++|+|+..+..- .....+..+... ...|++|++||+|+.+..+ ..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 3345677999999988876666678899999999999864321 112222223222 2356889999999864211 11
Q ss_pred H---HHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364 135 N---EEGELYAQENG---LSFLETSAKSAHNVNE 162 (178)
Q Consensus 135 ~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (178)
. .+...+....+ ++++++||++|.|+++
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 12222333444 4699999999999874
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.72 E-value=1.5e-17 Score=110.66 Aligned_cols=118 Identities=21% Similarity=0.315 Sum_probs=71.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchh---hhcCCcE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPM---YYRGAAA 85 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~d~ 85 (178)
.-.|+++|+.|+|||+|+..|..+...+...+... .. .... ......+.++|+||+.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 45799999999999999999999976554444421 11 1112 222345679999999887764433 4778999
Q ss_pred EEEEEECCC-HhHHHHHHHHH-HHHHHh--CCCCceEEEEEeCCCCcccc
Q 030364 86 AVVVYDITS-MDSFERAKKWV-QELQRQ--GNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 86 ~i~v~d~~~-~~s~~~~~~~~-~~~~~~--~~~~~~~ivv~nK~D~~~~~ 131 (178)
+|||+|.+. ......+.+++ ..+... .....|++|++||+|+..+.
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999984 33444444443 333332 24678999999999986543
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.3e-17 Score=111.65 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=106.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEE-EeCCeEEEEEEEeCCCchh-------hhccchh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQER-------YHSLAPM 78 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~-------~~~~~~~ 78 (178)
....++|+++|.+|+||||++|+|+.+...+...-..+.+...... .+++ -.+.+||+||.++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3468999999999999999999999766544322222222222222 3344 3567999999644 6666778
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc-------ccCHHHHHHHH--------H
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR-------KVKNEEGELYA--------Q 143 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~--------~ 143 (178)
++...|.++++.++.|+.---. ..+++.+.... -+.++++++|.+|...+- ........++. +
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999998763222 23334443332 247899999999975431 11111111111 1
Q ss_pred Hc--CCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 144 EN--GLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 144 ~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.. --|++..+...+.|++++...+++.+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11 137888889999999999999998765
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=6.5e-16 Score=97.11 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh---------hccchhhhc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPMYYR 81 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~ 81 (178)
+|+++|.+|+|||||+|+|++.... ....+..+.......+.+++..+ .++|+||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999975431 11222222222334455666544 59999995321 111233348
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK 124 (178)
.+|++++|+|++++.. +....+++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 22333444442 57899999998
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=7.3e-16 Score=113.98 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=118.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC---------------CCCccCceeeeEEEEEEEe---CCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF---------------FDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~ 69 (178)
....+..++-+-.-|||||..+++...- .-+.+...+...+...+.+ ++..|.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3466889999999999999999986311 1111222222223333333 557899999999999
Q ss_pred hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--
Q 030364 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-- 147 (178)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 147 (178)
-+|.......+..|.+.++++|++.+-.-..+...+..+. .+.-++-|+||.|++.+... .-..+..+-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHhCCCc
Confidence 9999998999999999999999998665555655555554 35668889999999875542 223334444555
Q ss_pred -eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 148 -SFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 148 -~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
..+.+||++|.|+++++++|++++-..+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 5799999999999999999999987654
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=8.2e-16 Score=105.28 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc--CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------c---ch
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---AP 77 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~ 77 (178)
++|+++|.+|+|||||+|++++.+...... +..+..........++ ..+.++||||...... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 489999999999999999999876543221 1122222222333444 4678999999643321 1 11
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccC------HHHHHHHHHHcCCeE
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLSF 149 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~ 149 (178)
....++|++++|+++.+ .+-+ -...++.+..... .-.+++++.|+.|......+. ....+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999886 2211 1223334433322 124688999999965432211 123344445555566
Q ss_pred EEEe-----CCCCCCHHHHHHHHHhhccc
Q 030364 150 LETS-----AKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 150 ~~~S-----a~~~~~i~~~~~~l~~~i~~ 173 (178)
+..+ +..+.+++++++.|.+.+..
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5555 45678899999988887764
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.69 E-value=1.8e-15 Score=120.75 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=80.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--C----------------CccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D----------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (178)
.....+|+++|++++|||||+++|+...-. . +..+..+.+.....+.++ ..++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence 445789999999999999999999752110 0 011112222223333333 46788999999
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+..+...+...+..+|++++|+|+.++..... ...+..+.. .+.|.++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 98888888888999999999999987532222 233333333 3678999999999863
No 262
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.9e-15 Score=113.39 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=110.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+..-|-++|+..-|||||+..|-+........-..+...-...+..+. .-.++|.||||+..|..++..-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 455788999999999999999987766443333333333333344442 2567799999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH------HHcC--CeEEEEeCCCCCCH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA------QENG--LSFLETSAKSAHNV 160 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~~i 160 (178)
|+.+.|.---.. .+.+......+.|++|++||+|.+++... ....++. ..+| .+++++||++|+|+
T Consensus 231 VVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pe--kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPE--KVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHH--HHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 999998431111 12333333468999999999998764431 1122221 1222 58999999999999
Q ss_pred HHHHHHHHhhcc
Q 030364 161 NELFYEIGDCTE 172 (178)
Q Consensus 161 ~~~~~~l~~~i~ 172 (178)
+.+-+++.-..+
T Consensus 305 ~~L~eaill~Ae 316 (683)
T KOG1145|consen 305 DLLEEAILLLAE 316 (683)
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.67 E-value=1.7e-15 Score=120.88 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=82.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC----Ccc------------CceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQE------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
......+|+|+|++++|||||+++|....-.. ... ...+.+.......+....+++.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 34457799999999999999999997522110 000 01222222223333333467889999999
Q ss_pred hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (178)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 130 (178)
.++......+++.+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888888888999999999999997544332 233333333 36889999999998753
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.5e-16 Score=116.77 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=105.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhc--------cchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHS--------LAPM 78 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~--------~~~~ 78 (178)
+..++|+++|.||+|||||+|.|.+....- ..|..|++.......++-..+.+.+.||.|..+ ... ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 346899999999999999999999765432 455556555555544444446777999999755 111 1234
Q ss_pred hhcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCccc-cccCHHHHHHHHH-Hc-CC
Q 030364 79 YYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQG------NPNLIMFLVANKVDLEEK-RKVKNEEGELYAQ-EN-GL 147 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~------~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~ 147 (178)
.+..+|++++|+|+.. -++...+.+.+....... ....|++++.||.|+... .+....-...... .. ..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 5778999999999943 232222233333332211 235789999999998654 2222111111111 11 23
Q ss_pred e-EEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 148 S-FLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 148 ~-~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+ ..++|+++++|++.+.+.|.......
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 4 45599999999999999998876643
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.2e-15 Score=101.92 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc---CCcE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---GAAA 85 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~d~ 85 (178)
..-.|+++|+.+||||+|+..|..+.+...+.+. ........++... ++++|.||+.+.+.....+++ .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHcccccccee
Confidence 3467999999999999999999988654432222 2223333334433 679999999988887777777 7899
Q ss_pred EEEEEECCC--HhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcccccc------------------------CHH-
Q 030364 86 AVVVYDITS--MDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEEKRKV------------------------KNE- 136 (178)
Q Consensus 86 ~i~v~d~~~--~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~------------------------~~~- 136 (178)
+|||+|... ++.-+-...++..+... .....|+++++||.|+.-+... ..+
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999874 23222233334444443 2567889999999998532110 000
Q ss_pred ---------HH--HHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 137 ---------EG--ELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 137 ---------~~--~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
++ ..|++. ..+.+.++|++++ +++++-+||.+.+
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 111111 2357899999998 9999999998753
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=8.2e-15 Score=112.94 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred EEEEEEeCCCchhh-----hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364 59 IKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (178)
Q Consensus 59 ~~~~i~d~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (178)
.++.|+||||.... .......+..+|+++||+|+....+... ....+.+... ..+.|+++|+||+|..+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 45679999997542 2233447899999999999987433332 2233444332 223599999999998543322
Q ss_pred CHHHHHHHHH----Hc---CCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 134 KNEEGELYAQ----EN---GLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 134 ~~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
..+....+.. .. ...++++||++|.|++.+++.|.+.
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2333333322 11 2379999999999999999999873
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=1.4e-14 Score=108.25 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEE---------------------eC-CeEEEEEEEeCCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLS---------------------LN-EVTIKFDIWDTAG 68 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~d~~g 68 (178)
++|.++|.||+|||||+|+|++........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998765432122222222121111 11 2346789999999
Q ss_pred c----hhhhccchhh---hcCCcEEEEEEECC
Q 030364 69 Q----ERYHSLAPMY---YRGAAAAVVVYDIT 93 (178)
Q Consensus 69 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 93 (178)
. +....+...+ ++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 2233333334 88999999999997
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=1.8e-14 Score=115.08 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh--CcCCC--Cc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.....+|+++|++++|||||+++|+. +.... .. +...+.+.......+.....++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44577999999999999999999974 21100 00 0112222222222232234678899999998
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
.|.......+..+|++++|+|+...-.... ...+..+... +.|.++++||+|+..+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC
Confidence 887777778899999999999886533322 2333444433 67889999999987533
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=5.1e-14 Score=102.86 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=86.1
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~ 125 (178)
..+.+.+||++|+...+..|..++.+++++++|+|.++. ..+......+..+.... ..+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 357788999999999999999999999999999999974 34555555555554433 3689999999999
Q ss_pred CCcccc----------------ccCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364 126 DLEEKR----------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~ 176 (178)
|+.... .-..+.+..+... ..+....++|.+..+++.+|+.+.+.|....+
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence 963210 1122333333221 23456778999999999999999887765443
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=5.2e-14 Score=112.39 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=72.9
Q ss_pred EcCCCCCHHHHHHHHHhCcCC--C--Cc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhh
Q 030364 16 LGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 79 (178)
Q Consensus 16 ~G~~~~GKStl~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 79 (178)
+|++++|||||+++|....-. . .. ....+.+.......+....+.+.+||+||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211 0 00 0011112222222233334778899999998888878888
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+..+|++++|+|++........ ..+..+.. .+.|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999986554433 22333333 368899999999975
No 271
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.57 E-value=1.4e-13 Score=104.08 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=122.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+.+.|+|+.++|||.+++.++++.+...+..+....+....+...+....+.+-|.+-. ........- ..||+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 45789999999999999999999998887766666666666666666677777788887754 222222222 7799999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (178)
++||.+++.+|+.+...++.-... ...|+++|++|+|+.+..+.......++++.+++ +-+..|.+...+ .++|..
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 999999999999887666554433 6899999999999987665444445889999998 456777764333 899999
Q ss_pred HHhhccccc
Q 030364 167 IGDCTECFS 175 (178)
Q Consensus 167 l~~~i~~~~ 175 (178)
|.....-.+
T Consensus 578 L~~~A~~Ph 586 (625)
T KOG1707|consen 578 LATMAQYPH 586 (625)
T ss_pred HHHhhhCCC
Confidence 887765443
No 272
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=8.8e-15 Score=108.90 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hc-----c--ch
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HS-----L--AP 77 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~-----~--~~ 77 (178)
.+....+++||.|++|||||+|.++.....-...+.+ +.......++.....++++||||.-.. .. + ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFT--TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT--TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccc--cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3456789999999999999999988766543322222 222233344555677889999995211 00 0 01
Q ss_pred hhhcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH---HHHHcCCeEEEE
Q 030364 78 MYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL---YAQENGLSFLET 152 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~ 152 (178)
....--.+++|+.|++. +-|.+....++..+... ..+.|.|+|+||+|...+..+..+.... ....-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 11122346899999995 45677766777777765 3588999999999998877776655333 333345899999
Q ss_pred eCCCCCCHHHHHHHHHhhcccc
Q 030364 153 SAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
|+.+.+|+-++.+..++.+.+.
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cccchhceeeHHHHHHHHHHHH
Confidence 9999999999888777766544
No 273
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.57 E-value=1.1e-13 Score=94.61 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=64.4
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (178)
....++++.|..-.....+. -+|.+|.|+|+.+.++... .....+. ..-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 44557788774222222221 2578999999998665321 1111121 11288999999975322223333
Q ss_pred HHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 139 ELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 139 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.+..+. .+.+++++||++|+|+++++++|.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333 4579999999999999999999997653
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.9e-14 Score=88.29 Aligned_cols=137 Identities=21% Similarity=0.235 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----hhhccchhhhcCCcEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~d~~i 87 (178)
||+++|..|+|||||.+.|.+...- +..|.. +.+.... .+|+||.- .+.........++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999876542 122221 1222211 58999852 22222344567899999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|-+++++++.-. ..+.. .-..|+|=|++|.|+++...+ +....|..+-|. ++|.+|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f~-----p~f~~--~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLD--IGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----ccccc--ccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999999865221 11111 124558889999999864433 455666666776 7999999999999999998
Q ss_pred HHhh
Q 030364 167 IGDC 170 (178)
Q Consensus 167 l~~~ 170 (178)
|...
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 8754
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.57 E-value=7.2e-14 Score=98.50 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---c------
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---L------ 75 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~------ 75 (178)
..+..++|+|+|.+|+|||||+|++++....... ....+..........++ ..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4456899999999999999999999987653321 11122222222233344 5678999999754311 0
Q ss_pred -chhhhc--CCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcc
Q 030364 76 -APMYYR--GAAAAVVVYDITSMD-SFERAKKWVQELQRQGNP--NLIMFLVANKVDLEE 129 (178)
Q Consensus 76 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~ 129 (178)
...++. ..|++++|..++... .... ...++.+...... -.++++|.||+|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 112332 578888887665421 1221 2233333332211 245899999999754
No 276
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=2.3e-14 Score=101.01 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=80.1
Q ss_pred hhhhccchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364 70 ERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (178)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
++++.+.+.+++++|.+++|+|+.++. +++.+.+|+..+.. .+.|+++|+||+|+.+...+..+....+. ..+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 567777888999999999999999877 89999999876643 47899999999999654444334444444 47899
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 149 FLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++.+||++|.|++++|+.|.+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~~~ 123 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNRIS 123 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCCEE
Confidence 999999999999999998876544
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=1.6e-14 Score=115.78 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=81.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCc---------------CCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 67 (178)
+.....+|+++|+.++|||||+++|+... +.+. ...+...........+++..+.+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34457899999999999999999997531 1100 11122222222233456677899999999
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
|+..|.......+..+|++++|+|+.+.-..+. ...++.... .+.|.++++||+|...
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhccc
Confidence 999888888889999999999999987432221 122222222 3567889999999853
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=1.7e-13 Score=111.98 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-----------E-----EEEEEEeCCCchhhhccchhhhcCCc
Q 030364 21 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-----------T-----IKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 21 ~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
++||||+.++.+......-....+...-...+..+.. . -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3499999999876654332222222222222222210 0 12789999999999888877888999
Q ss_pred EEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH------------H-HHHH--------
Q 030364 85 AAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN------------E-EGEL-------- 140 (178)
Q Consensus 85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~------------~-~~~~-------- 140 (178)
++++|+|+++ +++++.+. .+.. .+.|+++++||+|+........ + ...+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 44444432 2322 2679999999999854222100 0 0000
Q ss_pred ---HHH------------H--cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 141 ---YAQ------------E--NGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 141 ---~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
+.. . ..++++++||++|+|+++++.+|...
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 111 1 13589999999999999999988654
No 279
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.55 E-value=5.1e-14 Score=89.26 Aligned_cols=114 Identities=32% Similarity=0.421 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+|++++|..|+|||+|+.++..+.+...+. ++.+ +......+.++++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776643332 2222 233345567889999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
++..+.++++.+ |...+......+.|.++++||.|+....+...... .+++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998766 66666655456788999999999854333333222 345678889998874
No 280
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.55 E-value=3.6e-13 Score=95.72 Aligned_cols=163 Identities=17% Similarity=0.278 Sum_probs=114.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe--CCeEEEEEEEeCCCchhhhccchhhhcCC---
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL--NEVTIKFDIWDTAGQERYHSLAPMYYRGA--- 83 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~d~~g~~~~~~~~~~~~~~~--- 83 (178)
..-+|+|+|..++|||||+.+|.+.+. +.+..+..|....+.- .+...++.+|-..|+--+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 366899999999999999999987663 4455555554444322 33345677898888765555544444333
Q ss_pred -cEEEEEEECCCH-hHHHHHHHHHHHHHHh-------------------------CC-----------------------
Q 030364 84 -AAAVVVYDITSM-DSFERAKKWVQELQRQ-------------------------GN----------------------- 113 (178)
Q Consensus 84 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~-------------------------~~----------------------- 113 (178)
..+|++.|.+++ ..++.++.|...+.++ ..
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 378899999998 4566677775443211 00
Q ss_pred -------------CCceEEEEEeCCCCcc----cccc-------CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 114 -------------PNLIMFLVANKVDLEE----KRKV-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 114 -------------~~~~~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
-++|++||++|||... .-+. .....+.||..+|...+.+|++...|++-+...|++
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0567999999999732 1111 123457788899999999999999999999999998
Q ss_pred hcccc
Q 030364 170 CTECF 174 (178)
Q Consensus 170 ~i~~~ 174 (178)
++=.+
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 76543
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.54 E-value=2.2e-13 Score=97.67 Aligned_cols=118 Identities=12% Similarity=0.157 Sum_probs=68.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc-------hhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PMY 79 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~ 79 (178)
...++|+++|.+|+||||++|++++...... .....+..........+ ...+.++||||........ ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4688999999999999999999998764221 11111222212222334 3678899999965432211 111
Q ss_pred h--cCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc
Q 030364 80 Y--RGAAAAVVVYDITS--MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE 129 (178)
Q Consensus 80 ~--~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~ 129 (178)
+ ...|++++|..++. ....+ ...++.+.... ..-.+.+|+.|+.|...
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 26899999965542 22111 12223333221 11245899999999653
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=3.4e-13 Score=100.04 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=57.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY 72 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 72 (178)
...++|.++|.||+|||||+|+|++........|.++.+.....+.+++. ..++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45789999999999999999999876654333344443444444444332 235889999995321
Q ss_pred h-------ccchhhhcCCcEEEEEEECC
Q 030364 73 H-------SLAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 73 ~-------~~~~~~~~~~d~~i~v~d~~ 93 (178)
. ...-..++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12233467899999999974
No 283
>PRK13768 GTPase; Provisional
Probab=99.52 E-value=2.9e-13 Score=95.98 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=69.1
Q ss_pred EEEEEeCCCchhhh---ccchhh---hcC--CcEEEEEEECCCHhHHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 60 KFDIWDTAGQERYH---SLAPMY---YRG--AAAAVVVYDITSMDSFERA--KKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 60 ~~~i~d~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+.+||+||+.+.. ..+..+ +.. .+++++++|+......... ..++...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 57799999986543 222222 222 8999999999754322221 1222221111 24789999999999865
Q ss_pred ccccCHHHH--H------------------------HHHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 130 KRKVKNEEG--E------------------------LYAQENG--LSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 130 ~~~~~~~~~--~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..+...... . ...+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 433211000 0 0111223 58999999999999999999988763
No 284
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.52 E-value=2.9e-13 Score=99.65 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=83.0
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQ-GNPNLIMFLVANKVD 126 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D 126 (178)
.+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+......+..+... ...+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35678999999999999999999999999999999963 3455555555555443 246899999999999
Q ss_pred Ccccc---------------ccCHHHHHHHHHH-----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 127 LEEKR---------------KVKNEEGELYAQE-----------NGLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 127 ~~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+.... .-..+.+..+... ..+-...|+|.+..++..+|+.+.+.|...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 74210 0122233322211 124557788999999999999887766543
No 285
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.1e-13 Score=102.30 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=104.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC--------------------cC---------CCCccCceeeeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------------------QF---------FDFQESTIGAAFFTQVLSLNE 56 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~ 56 (178)
.+...++++++|+..+|||||+.+++.. +. ....++..+.+.......++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3446899999999999999999998761 10 111233445555566666667
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH-------HHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-------AKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
....+.+.|+||+..|......-...+|+.++|+|++..+ |+. .++....++... -..++|++||+|+.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS 329 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence 7788899999999888888888888999999999999532 322 222223333332 344789999999865
Q ss_pred ccccCHH----HHHHHH-HHcC-----CeEEEEeCCCCCCHHHH
Q 030364 130 KRKVKNE----EGELYA-QENG-----LSFLETSAKSAHNVNEL 163 (178)
Q Consensus 130 ~~~~~~~----~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 163 (178)
=.+-..+ ....|. +..| +.|++||+..|+|+...
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3222122 222333 3333 48999999999997654
No 286
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=1.7e-13 Score=94.90 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc--CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------c---ch
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---AP 77 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~ 77 (178)
++|+++|.+|+||||++|.+++........ ...+..........++ ..+.++||||..+... . ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887654432 1222233344446666 4566999999422111 1 11
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCccccccC-------HHHHHHHHHHcCCe
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEEKRKVK-------NEEGELYAQENGLS 148 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 148 (178)
....+.+++++|+..... +... ...++.+.....+ -..++||.|..|...+..+. ......+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 124568999999999832 2111 1222222222111 13478888988865544321 11234455666778
Q ss_pred EEEEeCC------CCCCHHHHHHHHHhhccc
Q 030364 149 FLETSAK------SAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 149 ~~~~Sa~------~~~~i~~~~~~l~~~i~~ 173 (178)
|...+.. ....+.++++.+-+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 8888776 335677777776665543
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.8e-13 Score=95.20 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=103.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC------------CC-------------------CccCceeeeEEEEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF------------FD-------------------FQESTIGAAFFTQVLSLN 55 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~------------~~-------------------~~~~~~~~~~~~~~~~~~ 55 (178)
.+..+|.+-||...-|||||+-+|+.+.. .. +.+...+.+.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34578999999999999999999987320 00 011223334444444444
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 135 (178)
-...+|.+-||||++.|......-...||+.|+++|+... -+++.++. ..+... .--..++|.+||+|+.+..+-..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRH-s~I~sL-LGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRH-SFIASL-LGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHH-HHHHHH-hCCcEEEEEEeeecccccCHHHH
Confidence 4556888999999999999888888999999999999643 23332221 222221 11234788899999977554333
Q ss_pred H----HHHHHHHHcCC---eEEEEeCCCCCCHHH
Q 030364 136 E----EGELYAQENGL---SFLETSAKSAHNVNE 162 (178)
Q Consensus 136 ~----~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 162 (178)
+ +-..|+..+++ .++++||+.|+|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2 33556677764 799999999998753
No 288
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.50 E-value=1.8e-14 Score=100.00 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=95.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc-eeee------EEEE---------------------------
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-IGAA------FFTQ--------------------------- 50 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~-~~~~------~~~~--------------------------- 50 (178)
...++.+-|+|+|..|+|||||+++|...-......|. ...+ .+..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 34566889999999999999999998762211100000 0000 0000
Q ss_pred --------------EEEeCCeEEEEEEEeCCCchhhh------ccchhhhcC--CcEEEEEEECCCHhHHHH-HHHHHHH
Q 030364 51 --------------VLSLNEVTIKFDIWDTAGQERYH------SLAPMYYRG--AAAAVVVYDITSMDSFER-AKKWVQE 107 (178)
Q Consensus 51 --------------~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~~--~d~~i~v~d~~~~~s~~~-~~~~~~~ 107 (178)
.+......+...++||||+-+.. ......+.. .-++++++|.....+-.. +..++-.
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 00001234667799999973321 122222222 347778888764322111 2222222
Q ss_pred HHHhCCCCceEEEEEeCCCCcccccc-----CHHH---H-H----------------HHHH-HcCCeEEEEeCCCCCCHH
Q 030364 108 LQRQGNPNLIMFLVANKVDLEEKRKV-----KNEE---G-E----------------LYAQ-ENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 108 ~~~~~~~~~~~ivv~nK~D~~~~~~~-----~~~~---~-~----------------~~~~-~~~~~~~~~Sa~~~~~i~ 161 (178)
.........|++++.||+|+.+..-. ..+. + . .+-. ..++..+.+|+.+|.|++
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 22233468999999999998642100 0000 0 0 0011 134689999999999999
Q ss_pred HHHHHHHhhcccc
Q 030364 162 ELFYEIGDCTECF 174 (178)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (178)
++|.++-+.++++
T Consensus 254 df~~av~~~vdEy 266 (366)
T KOG1532|consen 254 DFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 289
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.7e-13 Score=97.21 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=110.8
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceee--e----------------EEEEEEEeC----
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGA--A----------------FFTQVLSLN---- 55 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~--~----------------~~~~~~~~~---- 55 (178)
|+.....++.++|.++|+..-|||||.++|.+--...+ .....+. . .+...-.++
T Consensus 1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence 34444457899999999999999999999987321111 0000000 0 000000111
Q ss_pred --CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364 56 --EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (178)
Q Consensus 56 --~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (178)
.-...+.|.|.||++-.....-.-..-.|+.++|+.++.+..-.+.++.+-.+.... -..++++-||.|+......
T Consensus 81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence 123457899999998766655555566799999999997544344333333333332 2348899999998653322
Q ss_pred --CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 134 --KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 134 --~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
..++..+|.+. .+.|++++||..+.|++.++++|.+.|...
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 23445555553 357999999999999999999999988754
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=7.8e-13 Score=98.00 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=115.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
...+|+++-+..-|||||+..|+.+. |.+. .+...+.+...+.-.+..+.+.+.+.||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 35689999999999999999998743 1111 122334455555545555668899999999999999
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHH------HHcC
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYA------QENG 146 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~------~~~~ 146 (178)
.....++-+|++++++|+.+.. +.+.+..++.... .+.+.+||+||.|.+.++. +..+-...|. ++++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999999743 3333333333333 3666799999999987653 2222222232 2356
Q ss_pred CeEEEEeCCCCC----------CHHHHHHHHHhhccccc
Q 030364 147 LSFLETSAKSAH----------NVNELFYEIGDCTECFS 175 (178)
Q Consensus 147 ~~~~~~Sa~~~~----------~i~~~~~~l~~~i~~~~ 175 (178)
+|++..|+..|. ++.-+|+.|++.+....
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 799999987764 58899999999887654
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.48 E-value=7.4e-13 Score=96.55 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--H
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--N 135 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~ 135 (178)
.+.+.|+||+|....... ....+|.++++.+...++....... .+.. ..-++|+||+|+....... .
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 467889999997633222 4677999999987555554443321 1111 1238999999986533211 1
Q ss_pred HHHHHHHHH-------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 136 EEGELYAQE-------NGLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
.+....... +..+++.+||+++.|+++++++|.+.+..+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 111111111 235899999999999999999999876543
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=6.3e-13 Score=91.73 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=83.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------cCceee--------eEEEEEEEe------------------CC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIGA--------AFFTQVLSL------------------NE 56 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~------------------~~ 56 (178)
....|.++|.+|+|||||++++......... ....+. ........- ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3678899999999999999998764110000 000000 000000000 00
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (178)
....+.++|+.|.-. .. ..+....+..+.++|+.+.+.. ..... .. ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~--~~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDK--PLKYP-GM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccch--hhhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence 123556777776210 00 1111234555677787754321 11111 11 23567999999999653322223
Q ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+.....+.. .++++.+||++|.|++++++++.+..
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333333333 38999999999999999999998753
No 293
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=2.7e-13 Score=91.93 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----cchhhhcCC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----LAPMYYRGA 83 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~ 83 (178)
+.||+++|.+|+|||++-..++.+... ....++.+.+.......+-| +..+.+||++|++.+.. .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 568999999999999987766654321 22333343444444444444 35678999999974432 456788999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHH---HHHhCCCCceEEEEEeCCCCccccc--cCH----HHHHHHHHHcCCeEEEEeC
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQE---LQRQGNPNLIMFLVANKVDLEEKRK--VKN----EEGELYAQENGLSFLETSA 154 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~~~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~Sa 154 (178)
+++++|||++..+-...+..+-+. +.++ .|...++...+|+|+..... ... +....+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999987655555444442 3333 57788999999999854322 111 1223333445678899988
Q ss_pred CCCCCHHHHHHHHH
Q 030364 155 KSAHNVNELFYEIG 168 (178)
Q Consensus 155 ~~~~~i~~~~~~l~ 168 (178)
.+ +.+-.++..+.
T Consensus 162 wD-etl~KAWS~iv 174 (295)
T KOG3886|consen 162 WD-ETLYKAWSSIV 174 (295)
T ss_pred hh-HHHHHHHHHHH
Confidence 77 34444444433
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=8.2e-14 Score=97.64 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=59.2
Q ss_pred EEEEEeCCCchhhhccchhhh--------cCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364 60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 130 (178)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+.....-+.|.+.|+||+|+.++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 567999999987766655443 34558889999874332 111233333333222248999999999999652
Q ss_pred cc------------c-------CHHHHHHHHHH---cC-C-eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 131 RK------------V-------KNEEGELYAQE---NG-L-SFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 131 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.. . ........++. .+ . .++.+|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 0 00011112221 22 3 799999999999999999886653
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.47 E-value=4.3e-13 Score=109.15 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=81.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--CC--------------ccCceeeeEEEEEEEe--------------
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DF--------------QESTIGAAFFTQVLSL-------------- 54 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~--------------~~~~~~~~~~~~~~~~-------------- 54 (178)
.++....+|+|+|+.++|||||+++|+...-. .. .....+.........+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34556789999999999999999999864311 00 0000111111111112
Q ss_pred CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+...+.+.++||||+.+|.......++.+|+.|+|+|+.++-.... ...++.+.. .+.|+++++||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence 2236788999999999998888888999999999999997643332 223333333 478899999999986
No 296
>PTZ00416 elongation factor 2; Provisional
Probab=99.46 E-value=5.1e-13 Score=108.57 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=79.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCcc------------CceeeeEE--EEEEEeC--------CeEEEEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQE------------STIGAAFF--TQVLSLN--------EVTIKFD 62 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~~------------~~~~~~~~--~~~~~~~--------~~~~~~~ 62 (178)
.+...+|+++|+.++|||||+++|+...- ..... ...+.+.. .....+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999986321 10000 00011111 1122222 2357789
Q ss_pred EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
++||||+.+|.......++.+|++|+|+|+.++-... ....+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999998888888899999999999999753222 2233344433 357899999999986
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=3.3e-12 Score=89.15 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+...|+++|.+|+|||||++.+.+...........+. . .+ ......++.++|+||.- .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 345678999999999999999999864322111111111 1 11 11234567899999863 22 23346889999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCccccccCH---HHH-HHHHHH--cCCeEEEEeCCCCC
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRKVKN---EEG-ELYAQE--NGLSFLETSAKSAH 158 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~~~~~~---~~~-~~~~~~--~~~~~~~~Sa~~~~ 158 (178)
++++|++....... ...+..+... +.|. ++|+||.|+.+...... .+. ..+... .+.+++.+||+++-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986433222 2233333332 4564 45999999864221111 111 112211 24699999998873
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=2.6e-12 Score=103.36 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=78.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--CCcc--------------Cceee--eEEEEEEEeCCeEEEEEEEeCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQE--------------STIGA--AFFTQVLSLNEVTIKFDIWDTA 67 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~i~d~~ 67 (178)
+.+...+|+++|+.++|||||+.+|+...-. .... ...+. ......+.+++..+.+.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3455678999999999999999999863211 0000 00000 1111122334456788999999
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
|+.+|.......+..+|++++|+|+...-... ....+...... +.|.++++||+|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence 99998888888899999999999998753222 22333333332 45779999999975
No 299
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.44 E-value=9.8e-12 Score=94.49 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=112.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC--CeEEEEEEEeCCCchhhhccchhhhcCC--
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGA-- 83 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~-- 83 (178)
...-.|+|+|..++|||||+.+|.+.+ ...++.+..|....+.-+ +...++.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 456799999999999999999987644 244556666655544332 2345688999988766666655444432
Q ss_pred --cEEEEEEECCCHhH-HHHHHHHHHHHH-------------------------HhC-----C-----------------
Q 030364 84 --AAAVVVYDITSMDS-FERAKKWVQELQ-------------------------RQG-----N----------------- 113 (178)
Q Consensus 84 --d~~i~v~d~~~~~s-~~~~~~~~~~~~-------------------------~~~-----~----------------- 113 (178)
-.+++|+|.+.|.. ++.+..|+..+. .+. .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 37899999998854 444555533321 000 0
Q ss_pred ---------------CCceEEEEEeCCCCccc----cc-------cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 114 ---------------PNLIMFLVANKVDLEEK----RK-------VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 114 ---------------~~~~~ivv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
-++|++||++|+|.... .. ....-.+.+|..+|+.++.||++...+++.++..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 03789999999997431 11 11123566788899999999999999999999998
Q ss_pred Hhhcccc
Q 030364 168 GDCTECF 174 (178)
Q Consensus 168 ~~~i~~~ 174 (178)
..++-.+
T Consensus 260 ~h~l~~~ 266 (472)
T PF05783_consen 260 LHRLYGF 266 (472)
T ss_pred HHHhccC
Confidence 8877544
No 300
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.3e-12 Score=89.42 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc---chhhhcCCcEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---APMYYRGAAAA 86 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~d~~ 86 (178)
+.+|+++|...+||||+.+.++++..+.+......+.. ...-.+.+.-+.+.+||.||+..+..- ....++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 46799999999999999988887655433222111111 111122334578999999999766542 35668999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcccc-------ccCHHHHHHHHHH----cCCeEEEEe
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEEKR-------KVKNEEGELYAQE----NGLSFLETS 153 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~----~~~~~~~~S 153 (178)
++|+|+.+ +..+.+.++...+.+. ..++..+-|.++|.|-.... .+.......+++. ..+.|+.+|
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999987 5566666655555442 25888899999999964321 1111122222221 234678888
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 030364 154 AKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i 171 (178)
..+ .++-|+|..++|++
T Consensus 185 IyD-HSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKL 201 (347)
T ss_pred ecc-hHHHHHHHHHHHHH
Confidence 877 79999999888865
No 301
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.43 E-value=1.3e-11 Score=90.72 Aligned_cols=83 Identities=17% Similarity=0.054 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE---------------EEEEEEeCCCchhhh--
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT---------------IKFDIWDTAGQERYH-- 73 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~d~~g~~~~~-- 73 (178)
++|.++|.||+|||||+|+|++........|.++.+.......+.+.. ..+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877432222333333333333433321 358899999953211
Q ss_pred --c---cchhhhcCCcEEEEEEECC
Q 030364 74 --S---LAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 74 --~---~~~~~~~~~d~~i~v~d~~ 93 (178)
. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1223467899999999984
No 302
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.42 E-value=2.1e-12 Score=85.79 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=87.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEE---------------EEEEe--------------------
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFT---------------QVLSL-------------------- 54 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~-------------------- 54 (178)
.++|-|.|++|||||+|+.+++..-...-.......+.+. ..+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4899999999999999999877532111000111111111 00000
Q ss_pred CCeEEEEEEEeCCCchhhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (178)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (178)
......+.|++..|. -..+..+.-.| .-|+|+|++..+--.. +-...+ -..=++|+||.|+......
T Consensus 93 ~~~~~Dll~iEs~GN----L~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i------~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN----LVCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI------FKADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcc----eecccCcchhhceEEEEEECCCCCCCcc--cCCCce------eEeeEEEEehHHhHHHhCc
Confidence 001134556666661 11111222234 7888999987642111 000000 1124899999999887766
Q ss_pred CHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 134 KNEEGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+.+....-++.. +.+++.+|+++|+|++++++|+....
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 666665555554 47999999999999999999998754
No 303
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.1e-11 Score=88.94 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=99.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc----CCCCc---cCceeeeEEEEEEEe-------CCeEEEEEEEeCCCchhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQ---ESTIGAAFFTQVLSL-------NEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~----~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~i~d~~g~~~~ 72 (178)
++..+++.++|+..+|||||.+++..-. |..+. +...+.+.-...+.. .+...++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3446999999999999999999987521 22111 111112211111111 456688999999998654
Q ss_pred hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc---CHHHHHHHHHHc----
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV---KNEEGELYAQEN---- 145 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---- 145 (178)
-........-.|..++|+|+.....-.....+ .+-+..+ ...+||+||.|...+.+. .++......+.+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 44333344556899999999865332222221 1222222 236888888886432211 111222222221
Q ss_pred ---CCeEEEEeCCCC----CCHHHHHHHHHhhccccc
Q 030364 146 ---GLSFLETSAKSA----HNVNELFYEIGDCTECFS 175 (178)
Q Consensus 146 ---~~~~~~~Sa~~~----~~i~~~~~~l~~~i~~~~ 175 (178)
+.|++++||+.| +++.++.+.|.+++-...
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 269999999999 899999999988887654
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=4.1e-12 Score=93.46 Aligned_cols=161 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCc--eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccch-----hh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QEST--IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP-----MY 79 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----~~ 79 (178)
+..++|+|+|.+|+|||||+|+|.+-...+. ..++ ..++.....+..+.. =.+.+||.||......... .-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999975322111 1111 111111122222221 1366999999643222222 23
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc-------cccccCHHH----HHHHHHH----
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE-------EKRKVKNEE----GELYAQE---- 144 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-------~~~~~~~~~----~~~~~~~---- 144 (178)
+...|.+|++.+..=.+. -..+.+.+.+. ++|+.+|-+|+|.. .++....++ .++.+..
T Consensus 112 ~~~yD~fiii~s~rf~~n---dv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN---DVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--HH---HHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCchh---hHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 566788887766442221 12333555554 78899999999951 111222221 1222221
Q ss_pred cC---CeEEEEeCCCC--CCHHHHHHHHHhhccccc
Q 030364 145 NG---LSFLETSAKSA--HNVNELFYEIGDCTECFS 175 (178)
Q Consensus 145 ~~---~~~~~~Sa~~~--~~i~~~~~~l~~~i~~~~ 175 (178)
.+ -++|.+|+.+- .++..+.+.|.+.+...+
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 37899998654 568888888888776654
No 305
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.2e-12 Score=92.33 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=80.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh-CcCCCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK-GQFFDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (178)
++...+|+-+|.+|||||-.+|+- +..... .+...+..+....++++...+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 466789999999999999988753 110000 112223333444444444556778999999
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+++|..-....+..+|..+.|+|+..+---.. . +.+.-++..+.|++-++||.|..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~---KLfeVcrlR~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-L---KLFEVCRLRDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-H---HHHHHHhhcCCceEEEeeccccc
Confidence 99999999889999999999999996432222 2 22333335699999999999964
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.36 E-value=8.8e-12 Score=90.63 Aligned_cols=104 Identities=21% Similarity=0.091 Sum_probs=64.5
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHH
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 137 (178)
.+.+.|+||+|..... ......+|.++++...... +.+..+...+ .+.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678899999854211 2346677888887544433 3333333333 245679999999987543211000
Q ss_pred ------HHHHHH---HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 138 ------GELYAQ---ENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 138 ------~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
...+.. .+..+++.+||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999988654
No 307
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.36 E-value=2e-11 Score=88.82 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=85.5
Q ss_pred eEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH----------HHHHHHHHHHHHHhC-CC
Q 030364 46 AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS----------FERAKKWVQELQRQG-NP 114 (178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~ 114 (178)
......+.+++ ..+.++|.+|+..-+.-|.+++.+++++|||+++++-+. +.+...+++.+-... ..
T Consensus 184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 33444455555 667799999999989999999999999999999995322 222233444444433 36
Q ss_pred CceEEEEEeCCCCccc--------------cc-cCHHHHHHHHH-----H-----cCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 115 NLIMFLVANKVDLEEK--------------RK-VKNEEGELYAQ-----E-----NGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 115 ~~~~ivv~nK~D~~~~--------------~~-~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
+.++++++||.|+... .. -..+++..+.. . ..+-+..+.|.+..+|+.+|..+.+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 8999999999998431 11 12223322221 1 1345677899999999999999888
Q ss_pred hcccc
Q 030364 170 CTECF 174 (178)
Q Consensus 170 ~i~~~ 174 (178)
.|-+.
T Consensus 342 ~Ii~~ 346 (354)
T KOG0082|consen 342 TIIQN 346 (354)
T ss_pred HHHHH
Confidence 76544
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=9.5e-11 Score=86.72 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=93.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCcee---eeEEEE-------E-EEeCCeEEEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIG---AAFFTQ-------V-LSLNEVTIKFDI 63 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~---~~~~~~-------~-~~~~~~~~~~~i 63 (178)
-.+.|.|+|+.++|||||+|+|.+.-..+. ..+..| ++..++ . ...++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 368899999999999999999998722111 122233 221111 1 222455677889
Q ss_pred EeCCCchhhhc-------c----------------------chhhhc-CCcEEEEEE-ECC----CHhH-HHHHHHHHHH
Q 030364 64 WDTAGQERYHS-------L----------------------APMYYR-GAAAAVVVY-DIT----SMDS-FERAKKWVQE 107 (178)
Q Consensus 64 ~d~~g~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s-~~~~~~~~~~ 107 (178)
+||+|...-.. . ....+. .++..++|. |.+ .++. .+.-.+++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999421111 0 223344 788888888 764 1222 2223456666
Q ss_pred HHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC--CCCHHHHHHHH
Q 030364 108 LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEI 167 (178)
Q Consensus 108 ~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l 167 (178)
+... ++|+++++|+.|...+. .......+...++++++.+|+.. .+.+..+++.+
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 6654 89999999999943222 23334455666889988888744 34555555543
No 309
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.8e-12 Score=98.96 Aligned_cols=157 Identities=23% Similarity=0.227 Sum_probs=101.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCcee----eeEEEEE--------EEeCCe-E---EEEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG----AAFFTQV--------LSLNEV-T---IKFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~-~---~~~~i~d~~g~~~~ 72 (178)
+..-|+|+|+..+|||-|+..+-+..+........+ .++.+.. +.-++. . =-+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 456789999999999999999877444322222211 1221111 000111 0 12568999999999
Q ss_pred hccchhhhcCCcEEEEEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-----------------
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----------------- 132 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----------------- 132 (178)
..++......||..|+|+|+.++ +..+.+ +.++ ..+.|+||++||.|..-.+.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999999999999999999864 333222 3333 35899999999999642111
Q ss_pred c-------CHHHHHHHHHH-cC-------------CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 133 V-------KNEEGELYAQE-NG-------------LSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 133 ~-------~~~~~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+ ......+|+.. ++ +.+++|||.+|+||.+++.+|++.-+
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 00111222211 11 36789999999999999999998654
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2e-11 Score=96.65 Aligned_cols=125 Identities=20% Similarity=0.137 Sum_probs=88.3
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC----C------------ccCceeeeEEEEEEEeCCe-EEEEEE
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----F------------QESTIGAAFFTQVLSLNEV-TIKFDI 63 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~-~~~~~i 63 (178)
|.+........+|.++|+-.+|||||..+++...-.- . .+...+.+........... .+.+++
T Consensus 1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl 80 (697)
T COG0480 1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL 80 (697)
T ss_pred CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence 3444446678899999999999999999987632100 0 1122333444444444444 588999
Q ss_pred EeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+||||+-+|.......++-+|+.++|+|+...-.... ...++...+ .++|.++++||+|...
T Consensus 81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK---YGVPRILFVNKMDRLG 142 (697)
T ss_pred eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh---cCCCeEEEEECccccc
Confidence 9999999999999999999999999999997543332 233344433 4789999999999754
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=4.6e-11 Score=79.76 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=41.2
Q ss_pred EEEEeCCCchh----hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364 61 FDIWDTAGQER----YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125 (178)
Q Consensus 61 ~~i~d~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 125 (178)
+.|+|+||... .......++..+|++++|.+++....-.....+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 56999999743 2245677889999999999999855444444443333332 33488888884
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.30 E-value=2.3e-12 Score=89.63 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=87.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcC-----------CCCccCcee----------------eeEEEEEEEe-------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-----------FDFQESTIG----------------AAFFTQVLSL------- 54 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~------- 54 (178)
+.+.|.+.|+||+|||||++.|...-. .+ .+|.++ ...+..-...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP-SSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP-SSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G-GGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC-CCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 467999999999999999999875110 00 000000 1112222111
Q ss_pred -----------CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEe
Q 030364 55 -----------NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123 (178)
Q Consensus 55 -----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~n 123 (178)
+...+.+.|++|.|-.... .....-+|.+++|....-.+..+.++.-+-++. =++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEe
Confidence 1123566788887643222 223466899999999887666555444333332 288999
Q ss_pred CCCCccccccCHHHHHHHH--H----HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 124 KVDLEEKRKVKNEEGELYA--Q----ENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 124 K~D~~~~~~~~~~~~~~~~--~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
|+|.+.......+....+. . .+..|++.|||.++.|+++++++|.+....
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9997654433222222221 1 123599999999999999999998875543
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.29 E-value=6e-12 Score=89.52 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=99.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (178)
...-|.|+|..|+|||||++.|+.....+...-..+.+........+.. ..+.+.||.|.- .|+. .-.-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 3557999999999999999999965554433333333443444444443 245688999841 1111 1223
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce----EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI----MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
...+|.++.|.|+++|+.-......+..+.....+..| ++=|-||.|..... ...+ .++ .+.+||+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--ccccccc
Confidence 56799999999999998777766666667665444444 34456788864322 1111 122 5789999
Q ss_pred CCCCHHHHHHHHHhhcc
Q 030364 156 SAHNVNELFYEIGDCTE 172 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~i~ 172 (178)
+|+|++++.+++-..+.
T Consensus 325 tgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVA 341 (410)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999998766543
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.7e-11 Score=88.22 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
+.|.-.|+-.-|||||+..+.+...... .....+.+........+.....+.|+|.||++++-......+...|..++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 3577889999999999999987654321 122333444444444444455888999999998888777778899999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH---HcCCeEEEEeCCCCCCHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ---ENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++.++.-..... +.+..+.... ....++|+||+|..+...+... ..+... ..+.+++.+|+.+|.||+++.+.
T Consensus 81 V~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r~e~~-i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 81 VAADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEARIEQK-IKQILADLSLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred EeCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHHHHHH-HHHHHhhcccccccccccccccCCCHHHHHHH
Confidence 999754322221 1222222221 2235889999998764432222 222222 23468899999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+..+
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998773
No 315
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.27 E-value=1.3e-10 Score=83.41 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------- 71 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------- 71 (178)
.++|+|+|.+|+|||||+|.|++....... ..+...........-++..+.+.++||||...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999986543321 12222333334445577889999999999321
Q ss_pred ----------hhcc-------chhhh--cCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 72 ----------YHSL-------APMYY--RGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 72 ----------~~~~-------~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
|... ....+ ...|+++|+++.+... .-..+ ...+.+ ...+++|-|+.|+|...+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L----s~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL----SKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH----TTTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh----cccccEEeEEecccccCHH
Confidence 1100 00001 2357999999987521 11112 122333 3467899999999986544
Q ss_pred ccCH--HHHHHHHHHcCCeEEEEe
Q 030364 132 KVKN--EEGELYAQENGLSFLETS 153 (178)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~S 153 (178)
+... .....-.+.++++++...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 3322 222333445677665543
No 316
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.26 E-value=7e-10 Score=76.69 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG 82 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~ 82 (178)
.-+|+++|-|.+|||||+..++.-.........++.+..+..+.+++.. +++.|.||.-.-. .......+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 4589999999999999999988654433333344455666677777754 5699999953221 123445688
Q ss_pred CcEEEEEEECCCHhHH
Q 030364 83 AAAAVVVYDITSMDSF 98 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~ 98 (178)
+|.++.|.|++..+.-
T Consensus 140 aDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQ 155 (364)
T ss_pred ccEEEEEecCCcchhH
Confidence 9999999999965543
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.5e-10 Score=81.51 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhC---c-------C---C-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG---Q-------F---F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~---~-------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
....+.++|..+|+..-|||||..+++.- . + . ...+...+.+.......++-....+...|+||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 34467999999999999999999887641 1 0 0 1122334455555566665555566799999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG 146 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 146 (178)
+|-.....-..++|+.|+|+++.+..- .+.+..+...++. +.| +++++||+|+.+..+. ...+...+...++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 998877777788999999999998432 2222222222332 454 5666899999764432 2345566666666
Q ss_pred C-----eEEEEeCCCC-C-------CHHHHHHHHHhhcc
Q 030364 147 L-----SFLETSAKSA-H-------NVNELFYEIGDCTE 172 (178)
Q Consensus 147 ~-----~~~~~Sa~~~-~-------~i~~~~~~l~~~i~ 172 (178)
+ |++.-||+.- + .|.++++++-..+.
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 4 6777776443 2 24555555555544
No 318
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4e-11 Score=92.46 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-----------------eeeEEEEE---EEeCCeEEEEEEE
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-----------------GAAFFTQV---LSLNEVTIKFDIW 64 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~i~ 64 (178)
..+....+|.++|+-+.|||+|+..|.....+.....+. +....... -..+++.+-+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 455668899999999999999999998765433211111 11111111 1236678889999
Q ss_pred eCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 65 DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 65 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
||||+.+|.......++.+|++++++|+.+.-.+.. .+.++... ..+.|+++|+||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence 999999999999999999999999999998765544 22222222 357899999999995
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=2.1e-10 Score=80.31 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=42.6
Q ss_pred EEEEEEeCCCchh-------------hhccchhhhc-CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364 59 IKFDIWDTAGQER-------------YHSLAPMYYR-GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124 (178)
Q Consensus 59 ~~~~i~d~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK 124 (178)
..+.++|+||... ...+...|++ ..+++++|+|+...-.-.....+.+.+.. ...|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 4577999999732 1123455667 45689999988753222222233333332 46789999999
Q ss_pred CCCcc
Q 030364 125 VDLEE 129 (178)
Q Consensus 125 ~D~~~ 129 (178)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.23 E-value=1.8e-10 Score=81.45 Aligned_cols=106 Identities=21% Similarity=0.130 Sum_probs=66.6
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (178)
..+.+.|++|.|-..... ....-+|.++++.=..-.+...-++.-+-++. =++|+||.|.........+
T Consensus 142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHH
Confidence 446677888887543322 23456888888887776665555543333332 3889999996543221111
Q ss_pred HH--HHHH----H--HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 137 EG--ELYA----Q--ENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 137 ~~--~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.. ..+. . .+.-+++.+||.+|+|++++++++.+..+.
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 11 1111 1 133489999999999999999999886554
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.20 E-value=7.5e-11 Score=84.17 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCccccccCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 116 LIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 116 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.+-++|+||+|+........+......+. ...+++.+|+++|+|++++.+||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34599999999965322112222222332 357999999999999999999998754
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=4.5e-10 Score=87.55 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=69.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC-ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------cc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LA 76 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~ 76 (178)
+..++|+++|.+|+||||++|.+++......... ..++.........++ ..+.++||||...... ..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3468999999999999999999998764332221 111122222223344 5678999999653211 11
Q ss_pred hhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcc
Q 030364 77 PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEE 129 (178)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~ 129 (178)
..++. .+|++++|..+........-...++.+.....+ -...|||.|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12333 479999998876322211112334444433221 133788899999754
No 323
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.17 E-value=6.4e-11 Score=89.55 Aligned_cols=160 Identities=22% Similarity=0.338 Sum_probs=119.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
-+++|+.|+|..++|||+|+.+++.+.+.....+.. ..+.+.+..++....+.+.|-+|.. ...|-..+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence 468999999999999999999998888765333322 3446666677777778888888742 345667899999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHH-HHHcCCeEEEEeCCCCCCHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
|||...+.++++.++.+...+..... ...|.++++++.-.. .++.+...+...+ ++...+.+|++++.+|.+++..
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 99999999999999888888766543 567777777765442 2333444444444 4445589999999999999999
Q ss_pred HHHHHhhcccc
Q 030364 164 FYEIGDCTECF 174 (178)
Q Consensus 164 ~~~l~~~i~~~ 174 (178)
|+.+.+++-..
T Consensus 181 f~~~~~k~i~~ 191 (749)
T KOG0705|consen 181 FQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHH
Confidence 99988876544
No 324
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=1.3e-10 Score=82.83 Aligned_cols=81 Identities=14% Similarity=0.030 Sum_probs=53.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh----
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH---- 73 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~---- 73 (178)
|.++|.||+|||||+|+|++........|.++.+.......+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999987764333344443444444444432 2358899999953211
Q ss_pred c---cchhhhcCCcEEEEEEECC
Q 030364 74 S---LAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 74 ~---~~~~~~~~~d~~i~v~d~~ 93 (178)
. ..-..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223367899999999874
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.13 E-value=1.9e-10 Score=75.91 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=63.6
Q ss_pred hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEE
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 152 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
+.+..+..+++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+...... .....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 3456677888999999999987543222 11212222 236899999999998542221 11112334456789999
Q ss_pred eCCCCCCHHHHHHHHHhhcc
Q 030364 153 SAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i~ 172 (178)
||+++.|++++++.|.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999987653
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.13 E-value=4.3e-10 Score=76.64 Aligned_cols=93 Identities=27% Similarity=0.215 Sum_probs=64.8
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcC
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENG 146 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 146 (178)
+......+++.+|++++|+|++++..- |...+... ..+.|+++|+||+|+..... .......+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 467778889999999999999875411 11222222 24689999999999864332 223333333 2233
Q ss_pred C---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 147 L---SFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 147 ~---~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
. +++.+||++|.|+++++++|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 689999999999999999998865
No 327
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.12 E-value=3.7e-09 Score=79.76 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=77.7
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh----------HHHHHHHHHHHHHHh-CCCCceEEEEEeCCCC
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD----------SFERAKKWVQELQRQ-GNPNLIMFLVANKVDL 127 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~ 127 (178)
..+.++|.+|+..-+.-|..++.+++++|||+++++-+ .+.....++..+-.. ...+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56779999999999999999999999999999987422 234434444554443 2368999999999996
Q ss_pred cc------c----------cc--cCHHHHHHHHHH------------cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 128 EE------K----------RK--VKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 128 ~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.. + .. -..+.+..+... ..+.+..|+|.+..++..+|+.+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 32 1 01 223344444322 123556889999999999999887643
No 328
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.5e-09 Score=75.36 Aligned_cols=84 Identities=15% Similarity=0.020 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe------------C----CeEEEEEEEeCCCchh--
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL------------N----EVTIKFDIWDTAGQER-- 71 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~d~~g~~~-- 71 (178)
.+++.++|.||+|||||+|+++.........|..+.+.......+ . -....+.|+|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987754333333333322222221 1 1235678999998421
Q ss_pred --hhc---cchhhhcCCcEEEEEEECC
Q 030364 72 --YHS---LAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 72 --~~~---~~~~~~~~~d~~i~v~d~~ 93 (178)
-.. ..-.-++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 111 2233468899999999866
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=99.09 E-value=9.1e-10 Score=81.34 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred cchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEe
Q 030364 75 LAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
+....+.++|.+++|+|+.++. ....+.+|+.... ..+.|+++|+||+|+....+. .........++++++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 4445688999999999999765 3445566665443 247899999999998643221 112223346788999999
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 030364 154 AKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i 171 (178)
|+++.|++++++.|...+
T Consensus 157 A~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 157 VETGIGLEALLEQLRNKI 174 (352)
T ss_pred cCCCCCHHHHhhhhccce
Confidence 999999999999987654
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.09 E-value=3.7e-09 Score=76.79 Aligned_cols=139 Identities=14% Similarity=0.211 Sum_probs=85.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--- 74 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--- 74 (178)
...++|+++|+.|.|||||+|.|++...... ..++.........+.-++..+.+.++||||..++-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4578999999999999999999998643222 234444555566666678889999999999422111
Q ss_pred -----------cchh------------hh--cCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 75 -----------LAPM------------YY--RGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 75 -----------~~~~------------~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
.... .+ ..+++++|.+..+.. .+..+. ...+.+. ..+.+|=|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 0001 11 125788888887642 222211 1223333 345678889999986
Q ss_pred cccccCH--HHHHHHHHHcCCeEEE
Q 030364 129 EKRKVKN--EEGELYAQENGLSFLE 151 (178)
Q Consensus 129 ~~~~~~~--~~~~~~~~~~~~~~~~ 151 (178)
...+... +...+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 5443322 2334445567777774
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.08 E-value=8.3e-10 Score=79.81 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred hhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 77 PMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
+..+.++|.+++|+|+.++. ++..+.+|+..+.. .+.|+++|+||+|+....+ ......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 44578999999999999887 77888887776654 3688999999999865321 122233344578899999999
Q ss_pred CCCCHHHHHHHHHhh
Q 030364 156 SAHNVNELFYEIGDC 170 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (178)
++.|+++++..|...
T Consensus 148 ~g~gi~~L~~~L~~k 162 (287)
T cd01854 148 TGEGLDELREYLKGK 162 (287)
T ss_pred CCccHHHHHhhhccc
Confidence 999999999888753
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=99.06 E-value=1.9e-09 Score=79.60 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=68.6
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc-CHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
..++|.+++|++.....++..+..|+..... .+.|+++|+||+|+....+. ...+.....+..+++++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4669999999999888889999888765532 46889999999999653221 1122223334577899999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
|+++++++|...+..
T Consensus 195 GideL~~~L~~ki~~ 209 (347)
T PRK12288 195 GLEELEAALTGRISI 209 (347)
T ss_pred CHHHHHHHHhhCCEE
Confidence 999999999876543
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=99.04 E-value=1.3e-09 Score=79.30 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=65.3
Q ss_pred hhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
.+.++|.+++|+|+.++++... +.+|+..+.. .+.|+++|+||+|+....+. ........+..+++++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765444 4666655543 47889999999998532221 12233444567889999999999
Q ss_pred CCHHHHHHHHHhhc
Q 030364 158 HNVNELFYEIGDCT 171 (178)
Q Consensus 158 ~~i~~~~~~l~~~i 171 (178)
.|++++++.|...+
T Consensus 153 ~gi~~L~~~l~gk~ 166 (298)
T PRK00098 153 EGLDELKPLLAGKV 166 (298)
T ss_pred ccHHHHHhhccCce
Confidence 99999999876543
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=8.8e-10 Score=71.55 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
+++++|.+|+|||||+|++.+..... .....+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877543 333444455555555554 4679999995
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.01 E-value=1.5e-09 Score=71.79 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=39.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
..++|+++|.||+|||||+|+|.+..... ..+..+.+.....+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 46789999999999999999999765432 344444444444444433 2569999983
No 336
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.3e-09 Score=78.14 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=96.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------------c-----------CceeeeEEEEEEEeC----------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------------E-----------STIGAAFFTQVLSLN---------- 55 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------------~-----------~~~~~~~~~~~~~~~---------- 55 (178)
..++++|+|...+|||||+-.|+.++...-. + ...+.+...+.+++.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4789999999999999999988875432111 0 111112122222221
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK- 132 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~- 132 (178)
...--+.|+|..|+.+|.......+. ..|..++++++.....+.. ++.+-.+.. -+.|++|+++|+|+..+.-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 12234679999999999876655444 3678899999887654433 222223333 3899999999999865311
Q ss_pred -----------------------cCHHH----HHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 133 -----------------------VKNEE----GELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 133 -----------------------~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
....+ +++.+...-.|+|-+|+.+|+|++.+...|
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11111 222222233599999999999988765543
No 337
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.99 E-value=1.8e-09 Score=72.24 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=41.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
..++++++|.||+|||||+|++.+..... ..+..+.+.....+..+. .+.++|+||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 35899999999999999999999866533 344455555444444433 4679999983
No 338
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4e-08 Score=71.94 Aligned_cols=143 Identities=13% Similarity=0.206 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----- 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----- 74 (178)
..++++++|.+|.|||||+|.|+...+... ...+.........+.-++...+++++||||-.+...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 468999999999999999999998744322 122333344444455577888999999999321110
Q ss_pred --------------------cchhhhc--CCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 75 --------------------LAPMYYR--GAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 75 --------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
..+..+. .+++++|.+..+.. .+..+. ...+.+ ...+++|=|+.|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHH
Confidence 1111222 46788888887742 111111 111222 3456688889999976544
Q ss_pred ccCH--HHHHHHHHHcCCeEEEEeCCC
Q 030364 132 KVKN--EEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
++.. ....+....+++++|......
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 4322 233444555677766655443
No 339
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.92 E-value=3.8e-09 Score=74.01 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=92.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC-ceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhcc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSL 75 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~ 75 (178)
+....+++++|.+|+|||+|+|.+...+....... ..+.+.....+.+.. .+.+.|.||. .++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45678999999999999999999988765443333 555554444444444 4568999992 223334
Q ss_pred chhhhcCCc---EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc------cCHHH--HHHHHHH
Q 030364 76 APMYYRGAA---AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK------VKNEE--GELYAQE 144 (178)
Q Consensus 76 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------~~~~~--~~~~~~~ 144 (178)
...|+.+-+ -+.+.+|++.+-. .... ..+.-....++|+.+|.||||...... ..... ...+.+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~--~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQ--PTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCC--CCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 444443322 3445556653211 1111 112222235899999999999743211 11111 1111111
Q ss_pred ---cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 145 ---NGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
...|++.+|+.++.|+++++-.+.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 23478889999999999988766654
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.7e-08 Score=72.73 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=100.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC----------cCC----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG----------QFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
.+.++++|.-+|+..-|||||-.+++.- ++. ...+...+.+.....+.+.-....+-=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4567999999999999999998877641 110 11233455566666666665555666789999999
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---ccCHHHHHHHHHHcC--
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENG-- 146 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~-- 146 (178)
|-.....-....|+.|+|+.++|.. +.+.++.+...++-.. ..++|.+||.|+.+.. +..+-+.+++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8887777778899999999999854 3333433333333322 3377889999987433 233345566666665
Q ss_pred ---CeEEEEe---CCCCCC
Q 030364 147 ---LSFLETS---AKSAHN 159 (178)
Q Consensus 147 ---~~~~~~S---a~~~~~ 159 (178)
+|++.=| |+.|.+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~ 225 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQ 225 (449)
T ss_pred CCCCCeeecchhhhhcCCC
Confidence 4888766 455644
No 341
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4.9e-08 Score=67.24 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=82.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------- 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------- 72 (178)
-.++|+|+|.+|.||||++|+++....... +..|.........+.-++...++.++||||..+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 478999999999999999999987544321 1112222223333444677788899999994211
Q ss_pred -----------hc--------cchhhhcC--CcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364 73 -----------HS--------LAPMYYRG--AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK 130 (178)
Q Consensus 73 -----------~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 130 (178)
.. .+...+.+ ++.+++.+..+- .++..+. .+++.+.+ -..++-|+.|+|...-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 00 11222232 356666666653 3333322 22233322 3446778889995321
Q ss_pred cc--cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 131 RK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
.+ .-.+..++-...+++.+++--+.+...=+..++
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 11 111222333345677777766555444344444
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=7.3e-09 Score=69.42 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=41.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
+..++++++|.+|+|||||+|++.+..+.. ..+..+++.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999876532 33444444444445544 34679999994
No 343
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.89 E-value=1e-08 Score=76.49 Aligned_cols=95 Identities=28% Similarity=0.324 Sum_probs=68.0
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH----HHHHH
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE----LYAQE 144 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 144 (178)
.+.|..+...+...++++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+... ....+... .+++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4677778888888999999999998644 22333343332 36789999999998642 22233333 23556
Q ss_pred cCC---eEEEEeCCCCCCHHHHHHHHHhh
Q 030364 145 NGL---SFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
.++ .++.+||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998754
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=8.1e-09 Score=68.14 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=40.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (178)
....+++++|.+|+||||++|++.+... ....++.+.+.....+..+. .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3467899999999999999999996553 23455555554333333333 577999998
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.88 E-value=5.3e-09 Score=71.28 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=40.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCC-------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
..+++++|.+|+|||||+|+|.+..... ......+++.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 4689999999999999999999754321 2334445555555555543 3579999993
No 346
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-08 Score=73.99 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=79.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-CceeeeEEEEEEEe------CCeE-----------------------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSL------NEVT----------------------- 58 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~----------------------- 58 (178)
.+.=|+++|+-..||||+++.|+.+.++.... |..++++....+.- +|..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 35679999999999999999999998875432 33333333333222 1111
Q ss_pred ----------EEEEEEeCCCch-----------hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce
Q 030364 59 ----------IKFDIWDTAGQE-----------RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI 117 (178)
Q Consensus 59 ----------~~~~i~d~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 117 (178)
-.+.++|+||.- .|....+-+...+|.++++||+..-+.-++....+..+..+ .-.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cce
Confidence 125599999941 23334555678899999999998655444455555555544 445
Q ss_pred EEEEEeCCCCccccc
Q 030364 118 MFLVANKVDLEEKRK 132 (178)
Q Consensus 118 ~ivv~nK~D~~~~~~ 132 (178)
+=||.||+|..+..+
T Consensus 214 iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQ 228 (532)
T ss_pred eEEEeccccccCHHH
Confidence 778899999866444
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.84 E-value=1.3e-08 Score=73.25 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=41.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
.+.++++++|.||+|||||+|+|.+..... ..+..+.+.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999999765433 233344444444444433 3579999997
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.84 E-value=1.8e-08 Score=72.95 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=41.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
...++++++|.||+|||||+|+|.+..... ..+..+.+.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 356899999999999999999999866433 234445454444444443 3669999997
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=2.4e-08 Score=66.01 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=57.6
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
.++++|++++|+|+.++..-. ...+.+.+... ..+.|+++|+||+|+..+... ......+.+.+....+.+||+++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 468899999999999863211 11222223222 346899999999998543221 111222222222345789999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|++++.++|.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999997654
No 350
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=1.4e-08 Score=74.43 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=45.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
....+++|+|-||+|||||+|+|.+... ....+.+|.+.....+..+.. +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3468899999999999999999998766 335555677766666666654 669999996
No 351
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.78 E-value=6.6e-08 Score=70.89 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCceeeeEEEEEEEeCC--------------
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIGAAFFTQVLSLNE-------------- 56 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------- 56 (178)
...+..+.|.+.|+.+.|||||+-.|.-+....- .....+.+.....+-+++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 3456789999999999999999988776543221 111111222222222211
Q ss_pred -------eEEEEEEEeCCCchhhhccc--hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 57 -------VTIKFDIWDTAGQERYHSLA--PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 57 -------~~~~~~i~d~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
..--+.|.|+.|++.|-... -.+-.+.|..++++.+++.-+--. ++.+-.+. .-+.|++|+.||+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEeccc
Confidence 11336699999998886533 334467899999999998543211 11111122 237899999999998
Q ss_pred ccccccC--HHHHH----------------------HHHHHc---CCeEEEEeCCCCCCHHHHHHHHH
Q 030364 128 EEKRKVK--NEEGE----------------------LYAQEN---GLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 128 ~~~~~~~--~~~~~----------------------~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
....... .++.. ..+... -+|+|.+|+.+|+|++-+.+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 5421100 00110 111111 25999999999999876665443
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.76 E-value=3.9e-08 Score=72.73 Aligned_cols=83 Identities=12% Similarity=-0.073 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh-
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH- 73 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 73 (178)
+++.++|.|++|||||++.+++... .....|..+.......+.+++. ...+.+.|.||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 3333344433333444444332 2457899999963211
Q ss_pred ------ccchhhhcCCcEEEEEEECC
Q 030364 74 ------SLAPMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 74 ------~~~~~~~~~~d~~i~v~d~~ 93 (178)
...-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12334578999999999975
No 353
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.7e-07 Score=72.02 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=83.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+-++|+|+||+|||||++.|............. .......++...++|.++|.+ ...+ ....+-+|.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~-----GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR-----GPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC-----CceEEeecceeEEEEEeChHH--HHHH-HhHHHhhhee
Confidence 3567888999999999999999887543211111111 111134566778899999943 2332 3345779999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-----HHHHHH-cCCeEEEEeCC
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-----ELYAQE-NGLSFLETSAK 155 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-----~~~~~~-~~~~~~~~Sa~ 155 (178)
++++|.+-.-.++.+ .++..+..+..|. ++-|+++.|+........... +.|... .|+.+|.+|..
T Consensus 138 lLlIdgnfGfEMETm-EFLnil~~HGmPr--vlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 138 LLLIDGNFGFEMETM-EFLNILISHGMPR--VLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EEEeccccCceehHH-HHHHHHhhcCCCc--eEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999999865434433 3445566664332 566789999865332211111 222222 36788888853
No 354
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.75 E-value=1.3e-08 Score=66.74 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCC------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (178)
-.++++|++|||||||+|.|.+...... ......++.....+.+++.. .++|+||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 4789999999999999999998632211 11222233344555664443 389999975443
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=3.3e-08 Score=66.26 Aligned_cols=98 Identities=19% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCCc-hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364 66 TAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144 (178)
Q Consensus 66 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (178)
.||+ .+........++++|.+++|+|++++...... .+... ..+.|+++|+||+|+.+.... ....++.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~-----~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI-----LGNKPRIIVLNKADLADPKKT--KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH-----hcCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence 3454 23334446678999999999999876432211 11111 135689999999998543211 111122233
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 145 NGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.+..++.+||+++.|++++.+.|.+.+
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 456789999999999999999988764
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.74 E-value=6.4e-08 Score=63.81 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=54.6
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.....+. .....+....+.+++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988755432 12221 11123478999999999985432111 1111233334567899999999999999
Q ss_pred HHHHHhh
Q 030364 164 FYEIGDC 170 (178)
Q Consensus 164 ~~~l~~~ 170 (178)
.+.|.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988764
No 357
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.3e-07 Score=70.46 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=80.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceee----------e------------------------------
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGA----------A------------------------------ 46 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~----------~------------------------------ 46 (178)
...+||++.|..++||||++|+++..+.-+.. .+++.. .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45789999999999999999999985432211 111000 0
Q ss_pred --EEEEEEEeCCeE-----EEEEEEeCCCch---hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCc
Q 030364 47 --FFTQVLSLNEVT-----IKFDIWDTAGQE---RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL 116 (178)
Q Consensus 47 --~~~~~~~~~~~~-----~~~~i~d~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (178)
.....+.++... -.+.+.|.||-+ ........+..++|++|+|.++.+-....+ ..++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 000001111110 134578888853 334445667789999999999987544433 3333333332 33
Q ss_pred eEEEEEeCCCCccccccCHHHHHHHHHHcC--------CeEEEEeCC
Q 030364 117 IMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAK 155 (178)
Q Consensus 117 ~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 155 (178)
.++++-||.|.....+...+....-...+. -.++.+||+
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 366667888976543333333222222222 267778843
No 358
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=2.7e-06 Score=55.34 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=80.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCC-Cch--------------hh-
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA-GQE--------------RY- 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~-g~~--------------~~- 72 (178)
..+||.+.|+||+||||++.++...--.. ...--......+.-++...-|.+.|+. |.. .|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~---g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK---GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc---CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 47899999999999999999877421111 011122334444556666777777776 311 01
Q ss_pred ------h----ccchhhhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH
Q 030364 73 ------H----SLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141 (178)
Q Consensus 73 ------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 141 (178)
. .....+++.+|++|+ |---+ ++. ...+...+...-..+.|++.++++.+. + + -.+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr-~--P----~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR-H--P----LVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC-C--h----HHHHh
Confidence 1 112334456676654 33222 222 234444444444467888887877754 1 1 12222
Q ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 142 AQENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 142 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
+..+.-++. .+..|-+.+++.+...+..
T Consensus 150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 -KKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred -hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 233333332 5556666888888776653
No 359
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=1.1e-08 Score=70.17 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=83.9
Q ss_pred eCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhCC-CCceEEEEE
Q 030364 54 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQGN-PNLIMFLVA 122 (178)
Q Consensus 54 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~~ivv~ 122 (178)
++-..+.+.+.|.+|+..-+..|.+++++.-.+++++.++. ..-+++...++..+..... .+.++++..
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 34456778899999998888899999999888888776653 2334555566666666553 678899999
Q ss_pred eCCCCccc----------------cccCHHHHHHHHHHc----C-----C-eEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364 123 NKVDLEEK----------------RKVKNEEGELYAQEN----G-----L-SFLETSAKSAHNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 123 nK~D~~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~ 176 (178)
||.|+.+. .......+..|.... + + ---.+.|.+.+||.-+|.++.+.+.+..+
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99997531 112233444443221 1 1 22457788999999999998887766544
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.70 E-value=5.1e-08 Score=64.29 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (178)
....+++++|.+|+|||||+|.+.+..... ..+..+++........+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 346889999999999999999999765322 12222333333333333 2467999998
No 361
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.68 E-value=5.3e-07 Score=62.96 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGA 83 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~ 83 (178)
-+|-++|-|.+||||++..|.+-...-.....+..+...-.+.+++ -++++.|.||.-+-. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3899999999999999999986443211111222222233344555 457799999952211 1233456788
Q ss_pred cEEEEEEECCCHhHHHHHHH-HHHHH-------------------------------------HH---------------
Q 030364 84 AAAVVVYDITSMDSFERAKK-WVQEL-------------------------------------QR--------------- 110 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~-~~~~~-------------------------------------~~--------------- 110 (178)
+.+++|.|+..|-+-..+-+ .++-+ ..
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999886654443221 10000 00
Q ss_pred -------hCC--CCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 111 -------QGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 111 -------~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
... ..+|.+.+.||.|...-.+.. . .+.+ ..+++||..+.|++++++.+-+.+.-.+
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd-----i---i~~iphavpISA~~~wn~d~lL~~mweyL~Lvr 284 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD-----I---IYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVR 284 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccc-----e---eeeccceeecccccccchHHHHHHHhhcchheE
Confidence 000 145667777777753322111 0 1222 5789999999999999998877665443
No 362
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.65 E-value=2.9e-06 Score=63.39 Aligned_cols=152 Identities=16% Similarity=0.263 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCceeeeE----------EEEEEEe-CCeEEEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIGAAF----------FTQVLSL-NEVTIKFDIW 64 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~~~~----------~~~~~~~-~~~~~~~~i~ 64 (178)
.+=|.|+|+..+|||||+++|...-..+. ..+..|.+. ....+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 45688999999999999999987321111 111122111 1222333 5667899999
Q ss_pred eCCCchh-----h------hcc---c---------------hhhhc--CCcEEEEEEECC----CHhHHHHH-HHHHHHH
Q 030364 65 DTAGQER-----Y------HSL---A---------------PMYYR--GAAAAVVVYDIT----SMDSFERA-KKWVQEL 108 (178)
Q Consensus 65 d~~g~~~-----~------~~~---~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~~~ 108 (178)
|+.|..- | +.. | ...+. +.=++++.-|-+ .++.+... .+.+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998310 0 000 1 00011 122677766665 24444433 3445555
Q ss_pred HHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC--CCCHHHHHHH
Q 030364 109 QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYE 166 (178)
Q Consensus 109 ~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~ 166 (178)
... ++|+++++|-.+-.. +-..+....+...++++++.+++.. .+.+..++..
T Consensus 177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 554 899999999887432 2234556677778999999988754 3445544443
No 363
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.3e-08 Score=72.44 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=97.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccCcee--eeE-----------------------------EEEEE-
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIG--AAF-----------------------------FTQVL- 52 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~--~~~-----------------------------~~~~~- 52 (178)
+-.++|.-+|+..-||||+++++.+-. |..+.+...+ ..| .....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 457899999999999999999987621 1000000000 000 00000
Q ss_pred EeCCe---EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 53 SLNEV---TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 53 ~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
...++ -..+.|.|+||++......-+-..-.|+.++++..++.-.-.+..+.+-.+.... =+.++++-||.|+..
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIK 193 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhh
Confidence 00110 1346699999998766655555555678888887775322111122222222221 133788899999965
Q ss_pred cccc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 130 KRKV--KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 130 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
+.+. ..++.+.|.+. .++|++++||.-..|++.+.+.|++.|-.
T Consensus 194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 4332 22344555554 35799999999999999999999998754
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.62 E-value=2.3e-07 Score=66.96 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=60.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC---------------eEEEEEEEeCCCchhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQERY 72 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~d~~g~~~~ 72 (178)
...+++.++|.|++||||++|.|+.....+..-|..+.+.....+.+.+ ....++++|+.|.-.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3578999999999999999999999887766666666665555554422 3456889999985221
Q ss_pred h----cc---chhhhcCCcEEEEEEECC
Q 030364 73 H----SL---APMYYRGAAAAVVVYDIT 93 (178)
Q Consensus 73 ~----~~---~~~~~~~~d~~i~v~d~~ 93 (178)
. .+ .-.-++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1 11 223357789988888754
No 365
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=1.9e-07 Score=65.27 Aligned_cols=120 Identities=16% Similarity=0.216 Sum_probs=77.7
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh-------HHHHHHHH---HHHH-HHhCCCCceEEEEEeCC
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-------SFERAKKW---VQEL-QRQGNPNLIMFLVANKV 125 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~---~~~~-~~~~~~~~~~ivv~nK~ 125 (178)
..++|+.+|.+|+..-+..|..++.+..++|||...++-+ +-..+++- ++.+ ..+-.....+++.+||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3467889999999999999999999999999999877421 12223322 2222 12223466789999999
Q ss_pred CCccc------------------------------cccCHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHH
Q 030364 126 DLEEK------------------------------RKVKNEEGELYAQE-------------NGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 126 D~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~ 162 (178)
|+... .......+..+.+. +-|-+-.+.|.+.++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97420 00111122222221 124456688999999999
Q ss_pred HHHHHHhhcccccc
Q 030364 163 LFYEIGDCTECFSL 176 (178)
Q Consensus 163 ~~~~l~~~i~~~~~ 176 (178)
+|+...+.|...++
T Consensus 360 VFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887776554
No 366
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.4e-07 Score=73.08 Aligned_cols=118 Identities=22% Similarity=0.198 Sum_probs=82.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcC------------C--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF------------F--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
+.....+++++-+..-|||||...|....- . ...+.+.+.+.....+..-.+.+.+.++|.||+.+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 344577999999999999999999886421 1 11223344444444455555678899999999999
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
|........+-+|+.++.+|+..+-.-....-..+.+. .+...++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 99999999999999999999997543322211112221 34457899999993
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=2.3e-07 Score=60.15 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=51.0
Q ss_pred hhhcCCcEEEEEEECCCHhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 78 MYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
..++.+|++++|+|+.++.+.. .+..++.. . ..++|+++|+||+|+...... .......+..+.+++.+||+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence 4578899999999999876433 23333322 2 257899999999998543321 22334444566889999998
Q ss_pred CCCC
Q 030364 156 SAHN 159 (178)
Q Consensus 156 ~~~~ 159 (178)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8754
No 368
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9.4e-07 Score=61.50 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=96.4
Q ss_pred eeEEEEEcCCCC--CHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE--EEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 10 QVKLVLLGDMGT--GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT--IKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 10 ~~~i~v~G~~~~--GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...++|+|-+|+ ||.+++.+|....+.....+...+.+...++..+... +.+.+.-.. .+.+- ..........+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~l-pn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFL-PNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhcc-CCcccccceee
Confidence 346789999998 9999999998877776555555555555544322211 222222111 11111 11222344568
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc-----------------------------------
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE----------------------------------- 129 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~----------------------------------- 129 (178)
++++||.+....+..++.|+...... ... .+.++||.|...
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 99999999999999999987643222 111 345578988531
Q ss_pred ---------ccccCHHHHHHHHHHcCCeEEEEeCCC------------CCCHHHHHHHHHhh
Q 030364 130 ---------KRKVKNEEGELYAQENGLSFLETSAKS------------AHNVNELFYEIGDC 170 (178)
Q Consensus 130 ---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~ 170 (178)
..-........|+..+++.+++.++.+ ..|++.+|.+|-..
T Consensus 159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 000112245778889999999998743 24788888777543
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=2.2e-06 Score=59.98 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCcc-CceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhc------cc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQE-STIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHS------LA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~------~~ 76 (178)
..+..-|.|+|++++|||+|+|.|.+. .+..... ...+........... +....+.++||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345678999999999999999999987 4432111 111111111111211 2346788999999643322 12
Q ss_pred hhhhcC--CcEEEEEEECCC-HhHHHHHHHH
Q 030364 77 PMYYRG--AAAAVVVYDITS-MDSFERAKKW 104 (178)
Q Consensus 77 ~~~~~~--~d~~i~v~d~~~-~~s~~~~~~~ 104 (178)
...+.. ++.+|+..+... ....+.+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~ 114 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGL 114 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHH
Confidence 223333 788888877764 3344444333
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.58 E-value=1.2e-07 Score=70.23 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCC--ccC----ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF--QES----TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (178)
.++++|.+|+|||||+|+|.+...... ... ..-++.....+.+++.. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 378999999999999999997643221 111 11133344445554332 389999975443
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.57 E-value=9.2e-08 Score=70.02 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------cc-----------CceeeeEEEEEEE-------------eC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QE-----------STIGAAFFTQVLS-------------LN 55 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~-------------~~ 55 (178)
.-.++++|++|+||||++..|...-.... +. ...+..+...... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999988865211000 00 0011111111000 01
Q ss_pred CeEEEEEEEeCCCchhhhcc----chhh--------hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEE
Q 030364 56 EVTIKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVA 122 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~ 122 (178)
...+.+.++||||....... ...+ -...+..++|+|++... .+... ....... .+.-+|+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEE
Confidence 23467889999997432211 1111 12467889999999643 23322 2222211 2347889
Q ss_pred eCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
||.|... . .-.........++|+..++ +|++++++
T Consensus 267 TKlD~t~-~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTA-K---GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCC-C---ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9999532 2 1233344556789988888 77777665
No 372
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.57 E-value=1.3e-07 Score=69.29 Aligned_cols=155 Identities=15% Similarity=0.220 Sum_probs=84.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCC------------------CccCceeeeEEE-----EEEEe-----------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFD------------------FQESTIGAAFFT-----QVLSL----------- 54 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~------------------~~~~~~~~~~~~-----~~~~~----------- 54 (178)
.+.+|+|+|+..+|||||+-.|++++... -..+..+.+... ..++.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 47899999999999999998887754211 112222222111 11111
Q ss_pred ---CCeEEEEEEEeCCCchhhhccchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 55 ---NEVTIKFDIWDTAGQERYHSLAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 55 ---~~~~~~~~i~d~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+..-.+.|+|..|+++|-.....- -.-.|...+++-++-... ...++.+-... .-++|++||.+|+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLAL---aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLAL---ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhh---hhcCcEEEEEEeeccCc
Confidence 1222346799999999886533211 123455566665553211 11111111111 13677888888888754
Q ss_pred ccccCHH----------------------------HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 130 KRKVKNE----------------------------EGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 130 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+....+. .+..|..+.-||+|++|..+|++++.+.-.|
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 3322111 1112222334699999999999988765443
No 373
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=2.4e-07 Score=66.83 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=64.5
Q ss_pred CCCch-hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364 66 TAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144 (178)
Q Consensus 66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (178)
.|||. .........++.+|++++|+|+.++.+.+.. .+.+.+ .+.|+++|+||+|+.+.... .........
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence 46653 2334456678999999999999876443221 111112 25789999999998542211 111112223
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 145 NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.+.+++.+||+++.|++++.+.|.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4578999999999999999998877654
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=98.55 E-value=1.5e-07 Score=69.78 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCcee-------eeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-------AAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.++++|++|+|||||+|.|.+..... .....+ ++.....+..++.. .++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 37999999999999999999754322 111112 34444555554332 489999964
No 375
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.53 E-value=3.3e-07 Score=66.48 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCCchh-hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364 66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144 (178)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (178)
.|||.. ........+..+|++++|+|+.++.+.+. ..+.... .+.|+++|+||+|+.+.... .....+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHH
Confidence 567642 23344567889999999999987644322 1111111 26789999999998532111 111222234
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 145 NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.+.+++.+|++++.|++++.+.|.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4678899999999999999998877653
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.52 E-value=1.5e-07 Score=67.59 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCchhhhccc----h---hh-----hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364 58 TIKFDIWDTAGQERYHSLA----P---MY-----YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANK 124 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~----~---~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK 124 (178)
.+.+.++||||........ . .. -..+|..++|+|++... .+... ..+.+.. .+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence 4678899999975332211 1 11 12488999999998532 33322 2222221 135788999
Q ss_pred CCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
.|..... -.........+.|+..++ +|++++++-
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9964321 123334445678888887 777776653
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.52 E-value=6.8e-07 Score=66.64 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH 158 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (178)
..++|.+++|+++..+-....+.+++..+... +.+.++|+||+|+.+... +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997443444555555554443 567799999999965311 11122222 356899999999999
Q ss_pred CHHHHHHHHHh
Q 030364 159 NVNELFYEIGD 169 (178)
Q Consensus 159 ~i~~~~~~l~~ 169 (178)
|++++..+|..
T Consensus 184 gl~~L~~~L~~ 194 (356)
T PRK01889 184 GLDVLAAWLSG 194 (356)
T ss_pred cHHHHHHHhhc
Confidence 99999998853
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.51 E-value=2e-07 Score=66.76 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc------CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (178)
..+++|++|+|||||+|+|.... .........-++.....+.+++... ++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 67889999999999999998632 2222223333556667777754333 89999975443
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.51 E-value=8.5e-07 Score=58.64 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCchhhhccchh--------hhcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPM--------YYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
.....++|++|-......... ..-..|.+++++|+.+... +.+...+..++... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356678999996433322221 2335789999999875332 22222233333322 2779999995
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.49 E-value=2.7e-07 Score=68.98 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=39.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCC----CccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
..++.++|.+|+|||||+|+|....... ...+..+++.....+.+++. ..++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 3479999999999999999998643211 12344455555555555443 259999996
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.49 E-value=4.4e-07 Score=67.80 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
.+++++|.+|+|||||+|+|.+.... ....+..+++.....+..++. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 58999999999999999999975321 123334444544445555332 3599999964
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=1.3e-06 Score=65.36 Aligned_cols=93 Identities=30% Similarity=0.364 Sum_probs=60.0
Q ss_pred hhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHHHc
Q 030364 71 RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQEN 145 (178)
Q Consensus 71 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~~~ 145 (178)
.|...... +...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+... ....+.... +++..
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 44443333 34444 999999998743 22333343322 36789999999999642 222233332 34455
Q ss_pred CC---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 146 GL---SFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 146 ~~---~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
++ .++.+||+++.|++++++.|.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 65 689999999999999999997653
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=4.5e-07 Score=64.23 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCC--ccC----ceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF--QES----TIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
..++++|.+|+|||||+|+|.+...... ... ...++.....+.+.+. .++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 4688999999999999999997543221 111 1113333444444332 4999999743
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=98.46 E-value=2.4e-07 Score=68.14 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=54.1
Q ss_pred EEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 59 IKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
+.+.++||+|...... ....+ ....|..++|+|+..... .+.+ ..+.... ..--+++||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCCC-
Confidence 5688999999743211 11111 235788999999986432 2222 2222211 124788999996431
Q ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
. -.....+...+.|+..++ +|++++++.
T Consensus 295 -~--G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 -G--GAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred -c--cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 1 123333445688888887 788887764
No 385
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3e-08 Score=73.43 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=88.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCc--------CCC--------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--------FFD--------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (178)
+..+|.++.+-.+||||.-.+++.-. ... ......+.+.+...++++.+.+.+.++|+||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 46689999999999999998876411 110 02334556777788888888899999999999999
Q ss_pred hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.-....+++-.|+++.|||++-.-....+.-|.+ ....+.|....+||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 9999999999999999999996544444434432 2234778888899999743
No 386
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.3e-07 Score=70.74 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=80.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-----C-----------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-----D-----------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (178)
+..+|.+.-+-.+||||+-++++...-. + ......+.+.+..........+.+.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4668888899999999999887652110 0 01122233344444444555788999999999999
Q ss_pred hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
.-.....++-.|+.|+++++..+-.-. ....++.+.++ ++|.+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQ-t~tV~rQ~~ry---~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQ-TETVWRQMKRY---NVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehh-hHHHHHHHHhc---CCCeEEEEehhhhc
Confidence 888889999999999999988643222 22333445544 78899999999963
No 387
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.44 E-value=9.6e-06 Score=62.48 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=59.1
Q ss_pred EEEEEeCCCc-------------hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 60 KFDIWDTAGQ-------------ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 60 ~~~i~d~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
.+.+.|.||. +....+..++..+.+++|+|+--.+-+..... .-..+.+....+...|+|++|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn--VTDLVsq~DP~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI--VTDLVSQMDPHGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh--HHHHHHhcCCCCCeeEEEEeecc
Confidence 4568999993 22334567888999999999865543322221 11334444445777899999999
Q ss_pred CccccccCHHHHHHHHHHcC-----CeEEEEeCCCC
Q 030364 127 LEEKRKVKNEEGELYAQENG-----LSFLETSAKSA 157 (178)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~ 157 (178)
+.+.........+......- +.||.+..=.|
T Consensus 491 lAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 491 LAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred hhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 98765555555555544322 35666654444
No 388
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.44 E-value=1.3e-06 Score=74.28 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=66.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceee-eEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhh
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGA-AFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY 79 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~ 79 (178)
.+|+|++|+||||+++.- +-.++-.. ..+.+. ....+...+.+. ..++|++|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999875 33332110 011110 011122223332 3489999942 112233333
Q ss_pred h---------cCCcEEEEEEECCCH-----hH----HHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 80 Y---------RGAAAAVVVYDITSM-----DS----FERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 80 ~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
+ +..|++|+++|+.+- +. -..++..+.++.....-..|+.|++||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 2 357999999998842 11 1234455566666666799999999999975
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.37 E-value=5.2e-06 Score=59.66 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=69.0
Q ss_pred hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364 79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
-..+.|-.++++++.+|+ +...+.+++-.... .+...++++||+|+.+..+...++........+.+++.+|++++
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 345577788888888776 45555555444433 35567888999999765554434556666778999999999999
Q ss_pred CCHHHHHHHHHhhcccccc
Q 030364 158 HNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~~~~ 176 (178)
.|++++...+...+..+-.
T Consensus 153 ~~~~~l~~~l~~~~svl~G 171 (301)
T COG1162 153 DGLEELAELLAGKITVLLG 171 (301)
T ss_pred ccHHHHHHHhcCCeEEEEC
Confidence 9999999999887765533
No 390
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.3e-06 Score=64.53 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=92.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc----------C-------------CCCccCc------eeeeEEEEEEEeCCe
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----------F-------------FDFQEST------IGAAFFTQVLSLNEV 57 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~----------~-------------~~~~~~~------~~~~~~~~~~~~~~~ 57 (178)
+...++++++|...+||||+-..+.... + ...+..+ .+.+.....-.+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3558999999999999999876654410 0 0000011 011111111111222
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHHHHH--HHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFERAK--KWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
.-.+.+.|+||+..|......-...+|.-++|+++...+ .|+.-. +..-.+.+. ..-...++++||+|-+....
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccCc
Confidence 345779999999888887777778899999999986432 233321 112222222 23345788999999754221
Q ss_pred c---C---HHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Q 030364 133 V---K---NEEGELYAQENG------LSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 133 ~---~---~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 165 (178)
- . .++...|.+..+ ..++++|..+|.++++...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 1 122333444333 4799999999999987654
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.33 E-value=8.7e-07 Score=67.23 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=46.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
.+.|.++|-|||||||+||.|.+.+... .+.|+|.+....++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 6999999999999999999999988765 677777777666666655 3568999994
No 392
>PRK13695 putative NTPase; Provisional
Probab=98.33 E-value=3e-05 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=2.1e-06 Score=62.22 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCc--c----CceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--E----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (178)
..++++|++|+|||||+|.|.+....... . ....++.....+...+.. .++|+||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 47899999999999999999975432211 1 111123333444444322 48999998554
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.2e-06 Score=62.52 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-------eeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-------GAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
..++++|++|+|||||+|.|.+...... .... .++.....+..++. ..++|+||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 4688999999999999999987543221 1111 12233334444432 25899999743
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.22 E-value=8.7e-05 Score=51.43 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=32.6
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
...+++|.+|+|+|.+- .|+....+..+...... =.++.+|+||.|-.
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 34678999999999985 45555544433333331 37799999999953
No 396
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.19 E-value=7.2e-06 Score=62.18 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCchhhhcc----chhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 58 TIKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
.+.+.|+||+|....... ...+ ...++-+++|+|+.-...-.+ ....+... -.+.-+|+||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence 468889999996433221 1111 235678999999886432222 12223222 12457889999963
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.19 E-value=1.4e-05 Score=52.31 Aligned_cols=58 Identities=22% Similarity=0.147 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
.+.+.++|++|... ....++..+|-++++....-.+.+.-++. ..+... -++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~~------~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEIA------DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhhc------CEEEEeCCC
Confidence 46788999988642 22347888999999888774333332211 222222 388899987
No 398
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.17 E-value=0.00018 Score=47.54 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=100.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..-.|+++|..+.++..|...+...... +++++.-...-.--. .....-...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------------------~~l~Vh~a~sLPLp~-e~~~lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDKE----------------------FKLKVHLAKSLPLPS-ENNNLRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhccc----------------------eeEEEEEeccCCCcc-cccCCCceeEEEEE
Confidence 3779999999999999999998852210 111121111100000 01112356899999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
++|.++..|+..++.-+..+.....- ..+.++++-....+...+...+..+++..+.+|++.+.-...++...+-+.|.
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL 149 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL 149 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence 99999999999988777776554332 34677777777777778888999999999999999999999999888888888
Q ss_pred hhcc
Q 030364 169 DCTE 172 (178)
Q Consensus 169 ~~i~ 172 (178)
+.++
T Consensus 150 ~~lq 153 (176)
T PF11111_consen 150 RMLQ 153 (176)
T ss_pred HHHH
Confidence 7665
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=2.9e-05 Score=52.07 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=44.1
Q ss_pred EEEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
.+.+.++|++|...... ....+ ....+.+++|+|+...... + .....+.+... ..-+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-NQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-HHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 45577899999743211 11111 1348999999998754321 2 23333332211 246778999964322
Q ss_pred ccCHHHHHHHHHHcCCeEE
Q 030364 132 KVKNEEGELYAQENGLSFL 150 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~ 150 (178)
-.....+...++|+.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 122224555565543
No 400
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.09 E-value=0.00012 Score=53.81 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=54.2
Q ss_pred EEEEEEeCCCchhhhccchhhh--------cCCcEEEEEEECCCHhH-HHHHHH-HHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 59 IKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKK-WVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~-~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
....++++.|..........+. -..|++|-|+|+.+-.. ...+.. ...++... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 4456788888644433322222 23478999999986432 221222 22233222 28899999998
Q ss_pred cccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHH
Q 030364 129 EKRKVKNEEGELYAQEN--GLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~ 164 (178)
++.. .+......+.. .++++.++. .+.+..+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7664 23334444444 468888887 334444444
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=8.8e-05 Score=55.52 Aligned_cols=140 Identities=12% Similarity=0.065 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeEE------------------EEEEEe---------CCeEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFF------------------TQVLSL---------NEVTI 59 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~ 59 (178)
.-.++++|++|+||||++..|....... ........+.+ ...... .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578899999999999999987532100 00000001100 000100 11235
Q ss_pred EEEEEeCCCchhhhccc---hhhh---cCCcEEEEEEECCC-HhHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 030364 60 KFDIWDTAGQERYHSLA---PMYY---RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEEK 130 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~ 130 (178)
.+.++|++|........ ...+ ....-.++|++++. .+....+..-+.......... .+--+|+||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 67899999965332211 1112 22345688899886 344444333233322111100 12357789999533
Q ss_pred cccCHHHHHHHHHHcCCeEEEEe
Q 030364 131 RKVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
..=....+....+.|+..++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 11233444455566655544
No 402
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.4e-05 Score=61.05 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=78.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCc------------CCCC--ccCceeeeEEEEEEEe----------------
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ------------FFDF--QESTIGAAFFTQVLSL---------------- 54 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~---------------- 54 (178)
..+....++.|+.+..-|||||-..|.... |... .+...+.+.....+..
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 344456789999999999999999887532 1110 0111111221111111
Q ss_pred CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
++..+.+.++|.||+-+|.+.....++-.|+.++|+|.-+.-....-.-+.+.+..+ ...++++||+|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence 445678899999999999999999999999999999988764433322233344333 334788999996
No 403
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.06 E-value=5e-06 Score=61.39 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=44.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
.+.+++.|+|.|++||||++|+|...+... ..++.|.+.....+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence 568999999999999999999999877644 445556555555555544 4669999995
No 404
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.04 E-value=1.1e-06 Score=60.20 Aligned_cols=84 Identities=18% Similarity=0.071 Sum_probs=46.7
Q ss_pred EEEEEEeCCCchhhhcc----chhh--hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
+.+.++||+|....... ...+ ....+-+++|.+++... ..+.+..+ ...... --+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~~~---~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAFGI---DGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHSST---CEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcccC---ceEEEEeecCCC--
Confidence 56789999996433221 1111 12577899999998643 33333222 222111 256799999633
Q ss_pred ccCHHHHHHHHHHcCCeEEEEe
Q 030364 132 KVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (178)
..-....+....+.|+-.++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE
T ss_pred --CcccceeHHHHhCCCeEEEE
Confidence 12345555666788776665
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.03 E-value=3.3e-05 Score=41.29 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 82 GAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
-.++++|++|++. +-+.+.-..+++.++.. .++.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 4678999999995 45677767777888776 35899999999998
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=1.6e-05 Score=53.64 Aligned_cols=68 Identities=24% Similarity=0.215 Sum_probs=37.1
Q ss_pred EEEEEEeCCCchhhhcc---chh--hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 59 IKFDIWDTAGQERYHSL---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
....++++.|......+ ... ..-..+.+|.|+|+.+-.........+..-... . =++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--A---DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--A---DVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh--c---CEEEEeccccCChh
Confidence 45667888885443333 011 123457899999997753333333333222222 1 28899999987654
No 407
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.97 E-value=3.5e-05 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++-++|+|+.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45678999999999999998875
No 408
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=2e-05 Score=66.24 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCC-CCccC---ceeeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhh-
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFF-DFQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY- 79 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~- 79 (178)
-+|+|++|+||||++..-. ..|+ ..... ..+.....+...+.+. -.++||.|.- .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 4799999999999986532 2221 11111 1111111222222332 3488998841 112233322
Q ss_pred --------hcCCcEEEEEEECCCH-----hH----HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 80 --------YRGAAAAVVVYDITSM-----DS----FERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 80 --------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+..|++|+.+|+++- .. ...++.-++++...-.-..|+.|++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3567999999998742 11 11133334555555457899999999999854
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.95 E-value=0.00017 Score=53.05 Aligned_cols=85 Identities=7% Similarity=0.025 Sum_probs=45.8
Q ss_pred EEEEEEeCCCchhhhccchhhhc--------CCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYR--------GAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
....++++.|......+...++. ..+++|.|+|+.+.... +.......++.. . =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---A---D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---A---DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---C---CEEEEeccccCC
Confidence 45568888887544443333321 24789999999863321 111111122222 2 288999999875
Q ss_pred ccccCHHHHHHHHHHc--CCeEEEEe
Q 030364 130 KRKVKNEEGELYAQEN--GLSFLETS 153 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~S 153 (178)
.. +......+.. .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 2333333333 35677654
No 410
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.93 E-value=9.8e-05 Score=45.11 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=49.8
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 13 LVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 13 i~v~G-~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
|.+.| ..|+||||+...+...-. ....+ ...+..+. .+.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~-------vl~~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKR-------VLLIDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCc-------EEEEeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56666 568999999877653221 10111 11112222 167889999986422 23367788999999998
Q ss_pred CCCHhHHHHHHHHHH
Q 030364 92 ITSMDSFERAKKWVQ 106 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (178)
.+. .++..+..+++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 764 55666665555
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.92 E-value=1.1e-05 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 412
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.92 E-value=2.3e-05 Score=59.85 Aligned_cols=85 Identities=18% Similarity=0.057 Sum_probs=45.8
Q ss_pred EEEEEEeCCCchhhhcc----c--hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 59 IKFDIWDTAGQERYHSL----A--PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
..+.++||+|....... . ......+|.+++|+|++... ........+.... ...-+|.||.|... +-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a-~~ 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA-KG 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC-cc
Confidence 36789999997443221 1 11234678999999988643 1112223332211 12367889999532 11
Q ss_pred cCHHHHHHHHHHcCCeEEEEe
Q 030364 133 VKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (178)
=.+.......+.|+..++
T Consensus 249 ---G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIG 266 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEe
Confidence 123334445666665544
No 413
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=3.2e-05 Score=54.86 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=43.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----ccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 69 (178)
-.++|+.+|..|.|||||+++|++-.+... ..|............-.+..+++.+.|+.|.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 468999999999999999999998766432 2333333333333344566788899999983
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00056 Score=53.38 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=67.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeE-E---------------EEEEEe-----------CCeEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAF-F---------------TQVLSL-----------NEVTI 59 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~-~---------------~~~~~~-----------~~~~~ 59 (178)
.-.|+++|++|+||||++..|...-... ........+. . ...... ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578899999999999998886521100 0000000000 0 000000 11346
Q ss_pred EEEEEeCCCchhhhccchh---hh--cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC
Q 030364 60 KFDIWDTAGQERYHSLAPM---YY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK 134 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (178)
.+.|+|++|.......... .+ ......++|++.+.. ...+...++.+... .+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~--~-- 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG--R-- 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc--c--
Confidence 7889999996432211000 01 112345667776642 22333333333322 34678999999632 1
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 030364 135 NEEGELYAQENGLSFLETS 153 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (178)
.-.........+.++..++
T Consensus 500 lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT 518 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe
Confidence 2234444556677765554
No 415
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=9.1e-06 Score=54.26 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=33.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (178)
..=+++.|++|+||||+++.|.... ....+.+.++..+..-..+|..|.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~ 52 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYF 52 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeE
Confidence 4557888999999999999998766 333444444555555566665555
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.89 E-value=9.2e-05 Score=47.88 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=61.8
Q ss_pred EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC
Q 030364 15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS 94 (178)
Q Consensus 15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 94 (178)
.-|..|+|||++.-.+...-. .....+.-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 447889999999776653211 0011111111000 001112678899999753 3333567889999999999874
Q ss_pred HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 95 MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
.++......++.+.... ...++.+|+|+.+..
T Consensus 79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 44555555555554432 345678999999743
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.88 E-value=0.00022 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988644
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=59.36 Aligned_cols=86 Identities=14% Similarity=0.033 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
.+.+.++||+|...... ....+ .-..+.+++|+|+...+ ........+.... ...-+|.||.|... +
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~-r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA-R 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc-c
Confidence 36788999999632211 11111 12567889999987643 2222333333221 11366789999532 1
Q ss_pred ccCHHHHHHHHHHcCCeEEEEe
Q 030364 132 KVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (178)
. -.+.......++|+..++
T Consensus 256 g---G~alsi~~~~~~PI~fig 274 (433)
T PRK10867 256 G---GAALSIRAVTGKPIKFIG 274 (433)
T ss_pred c---cHHHHHHHHHCcCEEEEe
Confidence 1 124445556677765554
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.86 E-value=0.00027 Score=42.22 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=43.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-chhhhcCCcEEEEEEE
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD 91 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~d~~i~v~d 91 (178)
+++.|..|+||||+...+...-.. .+. ....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887653211 010 111111 5679999976432221 1456678899999998
Q ss_pred CCCH
Q 030364 92 ITSM 95 (178)
Q Consensus 92 ~~~~ 95 (178)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7753
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.6e-05 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 421
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=1.6e-05 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998764
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=2.3e-05 Score=59.67 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=48.3
Q ss_pred EEEEEEEeCCCchhhhcc----chh--hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 58 TIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
.+.+.++||+|....... ... ..-..+.+++|+|+...+ ....+...+..... ..-+|.||.|... +
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~-~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDA-R 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcc-c
Confidence 366889999996332211 111 123578899999988643 23333344433211 2367799999532 1
Q ss_pred ccCHHHHHHHHHHcCCeEEEEeC
Q 030364 132 KVKNEEGELYAQENGLSFLETSA 154 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
. -.+.......++|+..+..
T Consensus 255 ~---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 G---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred c---cHHHHHHHHHCcCEEEEeC
Confidence 1 1245555667777665543
No 423
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=1.6e-05 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
++|+|+|++|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 424
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.82 E-value=0.00045 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.-.++++|++|+|||||++.+.+-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4478999999999999999988643
No 425
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.81 E-value=6e-05 Score=54.22 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC----CCccCceeeeEEEEE-EEeCCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQV-LSLNEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g~ 69 (178)
+.+.++.|+|-||+|||||+|++...... .......+.+..... +.+.+.. .+.+.|+||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 46889999999999999999987653321 112222333333333 3443332 3679999995
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.80 E-value=2.8e-05 Score=42.62 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
..++.|+.|+||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998764
No 427
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.76 E-value=0.00012 Score=48.91 Aligned_cols=134 Identities=18% Similarity=0.236 Sum_probs=63.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeC-CCc---------------------
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT-AGQ--------------------- 69 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~-~g~--------------------- 69 (178)
||++.|.+|+||||+++++...--.. ..+.. .+......-++..+-|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532100 11222 222333334555555666666 331
Q ss_pred -hhhhcc----chhhhcCCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCC-CCccccccCHHHHHHHH
Q 030364 70 -ERYHSL----APMYYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV-DLEEKRKVKNEEGELYA 142 (178)
Q Consensus 70 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~-D~~~~~~~~~~~~~~~~ 142 (178)
+.+... ....+..+| ++++|---+ +.. ...|.+.+...-..+.|++.++.+. +. .-...+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 111111 111124555 555663321 110 1233344444334678888777766 32 1234455
Q ss_pred HHcCCeEEEEeCCCCCCH
Q 030364 143 QENGLSFLETSAKSAHNV 160 (178)
Q Consensus 143 ~~~~~~~~~~Sa~~~~~i 160 (178)
...++.+++++..+.+.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 556788888876665444
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.75 E-value=2.6e-05 Score=50.48 Aligned_cols=20 Identities=40% Similarity=0.747 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 030364 13 LVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~ 32 (178)
|+++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 429
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.74 E-value=0.00036 Score=53.32 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
....+++++.+|+== .+.--+..+++.++..+......++.++++-+|.+
T Consensus 152 lKaLyr~a~iLILDE-PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 152 LKALYRGARLLILDE-PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHhcCCCEEEEcC-CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 455677887776621 11112345566666666665556777888888866
No 430
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.72 E-value=0.00027 Score=43.45 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=57.8
Q ss_pred cCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh
Q 030364 17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD 96 (178)
Q Consensus 17 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 96 (178)
+..|+||||+...|...-.......+. ........ ...+.++|+|+... ......+..+|.++++.+.+. .
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-P 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-H
Confidence 567899999887665322111011111 11111111 11677999998642 233456788999999988764 5
Q ss_pred HHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 030364 97 SFERAKKWVQELQRQGNP-NLIMFLVANK 124 (178)
Q Consensus 97 s~~~~~~~~~~~~~~~~~-~~~~ivv~nK 124 (178)
+...+..+++.+.....+ ..++.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 566677777777665444 4556677775
No 431
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.71 E-value=3.2e-05 Score=52.55 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.=|+++|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999864
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.71 E-value=0.00028 Score=45.06 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
..-|++.|+.|+|||||++.+...-
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4468899999999999999998754
No 433
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.69 E-value=5.1e-05 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345667888999999999999999754
No 434
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.68 E-value=5.4e-05 Score=42.71 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998754
No 435
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.68 E-value=0.001 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+|.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999864
No 436
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=58.80 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=52.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hccchhhhcCC
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAPMYYRGA 83 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~~~~~~~~ 83 (178)
...+.+.|.++|-||+||||++|+|-..+... ..|..+.+-....+.+ .-.+.++|+||.--. .......++
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivLk-- 376 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVLK-- 376 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHhh--
Confidence 35668999999999999999999998877654 4444444322211111 124568999995221 122232332
Q ss_pred cEEEEEEECCCHhH
Q 030364 84 AAAVVVYDITSMDS 97 (178)
Q Consensus 84 d~~i~v~d~~~~~s 97 (178)
+++=|=++.+++.
T Consensus 377 -GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 -GVVRVENVKNPED 389 (572)
T ss_pred -ceeeeeecCCHHH
Confidence 4666777777653
No 437
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=4.2e-05 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-|+++|++|||||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988743
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.64 E-value=6.4e-05 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQF 35 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~ 35 (178)
=.++++|++|||||||++.+-+-+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3689999999999999999876443
No 439
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.64 E-value=7.6e-05 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+++..-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999875
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00029 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..-++++|++||||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998874
No 441
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=2.6e-05 Score=57.72 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--------------cCCCC-------ccCceeeeEEEEEE-------------EeC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG--------------QFFDF-------QESTIGAAFFTQVL-------------SLN 55 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~--------------~~~~~-------~~~~~~~~~~~~~~-------------~~~ 55 (178)
.--|+++|..|+||||.+-.|... .|... .....+.+++.... ...
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 445788999999999999877541 01000 00001111111111 113
Q ss_pred CeEEEEEEEeCCCchhhh-----ccc-hhhhcCCcEEEEEEECCCHhHHHHHH
Q 030364 56 EVTIKFDIWDTAGQERYH-----SLA-PMYYRGAAAAVVVYDITSMDSFERAK 102 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (178)
..++.+.|.||+|.+.-. .+. ..-.-..|-+|+|.|++-.+.-+...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 456889999999964322 111 11134579999999999876554433
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.62 E-value=7e-05 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 443
>PRK06217 hypothetical protein; Validated
Probab=97.62 E-value=6.4e-05 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
++|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998864
No 444
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.61 E-value=0.00071 Score=51.85 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCchhhh----ccchhhhc---CCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 58 TIKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+.+.++|++|..... .....++. ...-.++|++++.. ..+..+ +..+... . +--++.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc
Confidence 3678899999974332 11222333 23466778888743 333332 2222211 1 2357899999632
Q ss_pred ccccCHHHHHHHHHHcCCeEEEEe
Q 030364 130 KRKVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
. .-....+....++|+..++
T Consensus 372 ~----~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 372 S----LGSILSLLIESGLPISYLT 391 (424)
T ss_pred c----ccHHHHHHHHHCCCEEEEe
Confidence 1 1245556666788776654
No 445
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00048 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.-.++++|++|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999988864
No 446
>PRK03839 putative kinase; Provisional
Probab=97.59 E-value=6.8e-05 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
++|+++|.|||||||+.+.|...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.59 E-value=4.7e-05 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.58 E-value=6.2e-05 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 468999999999999999888643
No 449
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.58 E-value=0.00042 Score=51.99 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=60.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc---eeeeEE------------------EEEEEe---------CCeEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST---IGAAFF------------------TQVLSL---------NEVTI 59 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~---~~~~~~------------------~~~~~~---------~~~~~ 59 (178)
.-.|+++|+.|+||||-+-.|........-... .+++.+ .....- .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 667899999999999999887653320101111 111110 000000 12346
Q ss_pred EEEEEeCCCchhhhcc----chhhhcC--CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364 60 KFDIWDTAGQERYHSL----APMYYRG--AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 127 (178)
.+.++||.|...++.. ...++.. ..-..+|++++.. .+.+...+..+..... --+++||.|.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEcccc
Confidence 7889999997655432 2233332 2345667777753 2334444444443322 2567899995
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.57 E-value=5.7e-05 Score=52.31 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCchhhhccc------hhhhcCCcEEEEEEECC------CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364 58 TIKFDIWDTAGQERYHSLA------PMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~------~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 125 (178)
+-...++|+||+-+..... -..++.-+.-+.++... ++..|-. .++-.+.....-+.|-+=|+.|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHh
Confidence 3445699999984432211 12344456555555443 4444433 22233333222356667788999
Q ss_pred CCc
Q 030364 126 DLE 128 (178)
Q Consensus 126 D~~ 128 (178)
|+.
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 974
No 451
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.57 E-value=7e-05 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-++|+|++|||||||++-+.+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999987653
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.55 E-value=0.0032 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-.++++|++|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999988643
No 453
>PRK08727 hypothetical protein; Validated
Probab=97.53 E-value=0.0014 Score=46.26 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
+++.|++|+|||.|+..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 454
>PRK10646 ADP-binding protein; Provisional
Probab=97.52 E-value=0.0013 Score=42.98 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-|++-|.-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47889999999999999997654
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=0.00011 Score=46.65 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 456
>PRK14532 adenylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|+++|+|||||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 457
>PRK14530 adenylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 458
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.49 E-value=9.6e-05 Score=52.38 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.49 E-value=0.00011 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00016 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998744
No 461
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.46 E-value=0.00047 Score=43.41 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.--|++-|+-|+|||||++.+...-
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3458888999999999999987654
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.46 E-value=0.00014 Score=46.40 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF 36 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~ 36 (178)
-.++++|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999865543
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.45 E-value=0.00013 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.45 E-value=0.00013 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 465
>PRK13949 shikimate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=48.52 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
+|+|+|++|+||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 466
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+.+|+++|+|||||||+.+.+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988653
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.43 E-value=0.0011 Score=45.62 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCc
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~ 34 (178)
|+|+|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 468
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.42 E-value=0.0012 Score=42.73 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQF 35 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~ 35 (178)
.--|++-|+-|+|||||.+.+..+--
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34577889999999999999886544
No 469
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.41 E-value=0.0019 Score=43.50 Aligned_cols=86 Identities=24% Similarity=0.251 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (178)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+...++.+... +.|+.+|+|++|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 457889999996532 223455688999999999884 3555566666655543 4567899999996432 234
Q ss_pred HHHHHHHHcCCeEEE
Q 030364 137 EGELYAQENGLSFLE 151 (178)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (178)
+..++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 556677777877654
No 470
>PRK04195 replication factor C large subunit; Provisional
Probab=97.41 E-value=0.0043 Score=48.52 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 557899999999999999998764
No 471
>PRK00625 shikimate kinase; Provisional
Probab=97.41 E-value=0.00017 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|+++|.|||||||+.+.+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 472
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.41 E-value=0.002 Score=50.62 Aligned_cols=55 Identities=4% Similarity=-0.001 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCccccc-c-------CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 117 IMFLVANKVDLEEKRK-V-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 117 ~~ivv~nK~D~~~~~~-~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
|+|+|++-+|...... . ...-..++....++..+..++....-+...+..|+..-
T Consensus 167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999665322111 0 00112334455678889998888888888888887754
No 473
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.00012 Score=55.15 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=52.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC----cC------CCCccCc-----------eeeeEEEEE-------E------
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG----QF------FDFQEST-----------IGAAFFTQV-------L------ 52 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~----~~------~~~~~~~-----------~~~~~~~~~-------~------ 52 (178)
..+...|+++|..|+||||.+-.|... .. ...+.|. .+.+++... +
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 345678999999999999988776541 00 0001111 111111110 0
Q ss_pred EeCCeEEEEEEEeCCCchhhhcc------chhhhcCCcEEEEEEECCCHhHHHH
Q 030364 53 SLNEVTIKFDIWDTAGQERYHSL------APMYYRGAAAAVVVYDITSMDSFER 100 (178)
Q Consensus 53 ~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~ 100 (178)
......+.+.|+||.|....... ...-.-+.|=+++|+|+.-.+.-.+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 00223367889999996433221 1122346789999999997654444
No 474
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.41 E-value=0.00017 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
=.++|+|++|+|||||+|-+.+=
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 37899999999999999987763
No 475
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00098 Score=48.65 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
=|++-||||.|||||++.|...-
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhh
Confidence 46777999999999999998643
No 476
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.40 E-value=0.0063 Score=40.75 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=50.8
Q ss_pred EEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH
Q 030364 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 139 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 139 (178)
.+.++|+|+.... .....+..+|.++++.+.+. .+...+..+++.+... ......+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 6789999975332 23455688999999998775 3455555555555543 223467889999854322 122233
Q ss_pred HHHHHcCCeEE
Q 030364 140 LYAQENGLSFL 150 (178)
Q Consensus 140 ~~~~~~~~~~~ 150 (178)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 477
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00014 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
....+|+|.|.||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999999874
No 478
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.40 E-value=0.00018 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.|+|+|..|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.40 E-value=0.00018 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
.-.++++|++|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4478999999999999999875
No 480
>PRK02496 adk adenylate kinase; Provisional
Probab=97.39 E-value=0.0002 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++++|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.38 E-value=0.00018 Score=44.12 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999875
No 482
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.38 E-value=0.00019 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.++++|++|+||||+++.+.+-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999998864
No 483
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.38 E-value=0.0053 Score=44.67 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc--CCcEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVV 88 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~ 88 (178)
-.|+|.|.+||||||+++.|-...+ ..+|......+......... ..+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 3688999999999999999842111 12333333222222222222 2356788
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
++|+.+.+.+......+..+... +.++.++.-+++
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~ 95 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS 95 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence 88888765444555555666554 333444444444
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.37 E-value=0.00017 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 485
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.37 E-value=0.00027 Score=48.88 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+...|+|.|++|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998763
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00017 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 030364 11 VKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~ 31 (178)
++|+|.|.||+||||+.+.|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 579999999999999999887
No 487
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.37 E-value=0.00018 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999873
No 488
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.37 E-value=0.0002 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.++|+|+|+|||||||+.+.|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999875
No 489
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.36 E-value=0.0013 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..+|+|.|.+||||||+++.|...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 490
>PLN02200 adenylate kinase family protein
Probab=97.36 E-value=0.00031 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.|+|+|+|||||||+...+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
No 491
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.36 E-value=0.0022 Score=49.93 Aligned_cols=87 Identities=7% Similarity=-0.009 Sum_probs=48.0
Q ss_pred EEEEEEECCCHh---HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 85 AAVVVYDITSMD---SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 85 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.+|+|=|+=+.- ..+..+..++...+ ....|+|++++-+-......-...-...+-...++..+..+.-...-++
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s--~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVS--IGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK 273 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHh--cCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence 357776665433 33333433443322 3567889988877653221111111222234456777777777777788
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
..+..|+.....
T Consensus 274 K~L~ric~~e~~ 285 (634)
T KOG1970|consen 274 KFLKRICRIEAN 285 (634)
T ss_pred HHHHHHHHHhcc
Confidence 888777765543
No 492
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.00017 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCc
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~ 34 (178)
++++|++||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988744
No 493
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.35 E-value=0.00018 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 494
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.34 E-value=0.0002 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.34 E-value=0.0002 Score=49.07 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|.|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998763
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.34 E-value=0.0002 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
=|+++|++||||+|+++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998763
No 497
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0002 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999875
No 498
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.33 E-value=0.00024 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999888754
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0002 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-+.++|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0002 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
.--.+++|++|||||||++.+-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 3346899999999999998763
Done!