Query 030364
Match_columns 178
No_of_seqs 162 out of 1780
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 20:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.6E-43 1.6E-47 241.8 20.4 168 6-173 9-176 (216)
2 2efe_B Small GTP-binding prote 100.0 6.3E-38 2.2E-42 210.9 23.8 175 1-175 3-177 (181)
3 1r2q_A RAS-related protein RAB 100.0 3.2E-37 1.1E-41 205.2 22.7 166 7-172 3-168 (170)
4 2a5j_A RAS-related protein RAB 100.0 3.1E-37 1.1E-41 209.5 22.5 169 5-173 16-184 (191)
5 3tkl_A RAS-related protein RAB 100.0 4.4E-37 1.5E-41 209.3 23.1 168 7-174 13-180 (196)
6 2ew1_A RAS-related protein RAB 100.0 2.3E-37 7.8E-42 211.7 21.7 168 6-173 22-189 (201)
7 1z0j_A RAB-22, RAS-related pro 100.0 1E-36 3.5E-41 202.9 24.0 165 8-172 4-168 (170)
8 1z0f_A RAB14, member RAS oncog 100.0 5.9E-37 2E-41 205.6 22.7 167 6-172 11-177 (179)
9 2hup_A RAS-related protein RAB 100.0 2.5E-37 8.4E-42 211.6 21.2 168 7-174 26-194 (201)
10 1ek0_A Protein (GTP-binding pr 100.0 7.4E-37 2.5E-41 203.5 22.6 165 9-173 2-169 (170)
11 1z08_A RAS-related protein RAB 100.0 2.5E-37 8.4E-42 206.0 20.3 167 7-173 3-169 (170)
12 2fu5_C RAS-related protein RAB 100.0 1.2E-37 4.2E-42 210.0 18.9 167 7-173 5-171 (183)
13 2g6b_A RAS-related protein RAB 100.0 8.7E-37 3E-41 205.1 22.2 171 5-175 5-176 (180)
14 2y8e_A RAB-protein 6, GH09086P 100.0 7.7E-37 2.6E-41 205.0 21.9 168 7-174 11-178 (179)
15 2fg5_A RAB-22B, RAS-related pr 100.0 7.2E-37 2.5E-41 207.9 21.8 168 7-174 20-187 (192)
16 2gf9_A RAS-related protein RAB 100.0 1.4E-36 4.9E-41 205.8 23.1 167 7-173 19-185 (189)
17 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-36 5.5E-41 208.2 23.4 168 6-173 4-171 (206)
18 2bme_A RAB4A, RAS-related prot 100.0 1.2E-36 4E-41 205.6 22.3 167 7-173 7-173 (186)
19 3tw8_B RAS-related protein RAB 100.0 9.6E-37 3.3E-41 204.9 21.7 168 6-174 5-172 (181)
20 2oil_A CATX-8, RAS-related pro 100.0 1.4E-36 4.7E-41 206.5 21.7 169 5-173 20-188 (193)
21 3t5g_A GTP-binding protein RHE 100.0 9.8E-37 3.3E-41 205.2 20.6 168 7-175 3-171 (181)
22 2o52_A RAS-related protein RAB 100.0 1.3E-36 4.5E-41 207.8 21.0 167 7-173 22-188 (200)
23 3dz8_A RAS-related protein RAB 100.0 6.9E-38 2.3E-42 212.7 14.5 168 7-174 20-187 (191)
24 1zbd_A Rabphilin-3A; G protein 100.0 2.6E-36 8.9E-41 206.7 22.4 166 7-172 5-170 (203)
25 3kkq_A RAS-related protein M-R 100.0 2.4E-36 8.3E-41 203.6 21.8 167 6-173 14-182 (183)
26 2fn4_A P23, RAS-related protei 100.0 2.3E-36 7.7E-41 203.1 21.5 169 6-175 5-174 (181)
27 2il1_A RAB12; G-protein, GDP, 100.0 6.7E-37 2.3E-41 208.0 18.7 168 5-172 21-189 (192)
28 2hxs_A RAB-26, RAS-related pro 100.0 8.6E-37 2.9E-41 204.8 18.8 171 7-177 3-177 (178)
29 2p5s_A RAS and EF-hand domain 100.0 6.4E-37 2.2E-41 209.2 18.4 169 5-173 23-197 (199)
30 1z2a_A RAS-related protein RAB 100.0 2E-36 6.7E-41 201.1 20.1 164 8-172 3-166 (168)
31 1g16_A RAS-related protein SEC 100.0 2E-36 6.7E-41 201.5 19.9 165 9-174 2-166 (170)
32 3cpj_B GTP-binding protein YPT 100.0 3.3E-36 1.1E-40 209.1 21.5 167 7-173 10-176 (223)
33 3cbq_A GTP-binding protein REM 100.0 1.2E-36 4E-41 207.3 18.7 170 6-175 19-190 (195)
34 1z06_A RAS-related protein RAB 100.0 4.7E-36 1.6E-40 203.3 21.4 165 8-172 18-187 (189)
35 3q85_A GTP-binding protein REM 100.0 3E-36 1E-40 200.6 19.6 165 10-174 2-168 (169)
36 3c5c_A RAS-like protein 12; GD 100.0 2.5E-36 8.6E-41 204.4 19.5 166 6-173 17-186 (187)
37 1wms_A RAB-9, RAB9, RAS-relate 100.0 9.4E-36 3.2E-40 199.6 21.8 167 6-173 3-174 (177)
38 3bc1_A RAS-related protein RAB 100.0 8.4E-36 2.9E-40 202.4 21.5 168 6-173 7-185 (195)
39 3ihw_A Centg3; RAS, centaurin, 100.0 1.3E-35 4.4E-40 200.5 21.4 164 5-175 15-182 (184)
40 2nzj_A GTP-binding protein REM 100.0 5.7E-36 2E-40 200.2 19.2 167 8-175 2-171 (175)
41 3reg_A RHO-like small GTPase; 100.0 1.4E-35 4.9E-40 201.7 21.4 169 5-175 18-190 (194)
42 3oes_A GTPase rhebl1; small GT 100.0 2.7E-36 9.4E-41 206.4 17.9 168 7-175 21-189 (201)
43 3q3j_B RHO-related GTP-binding 100.0 6.4E-36 2.2E-40 206.5 19.6 167 6-174 23-204 (214)
44 1c1y_A RAS-related protein RAP 100.0 1.3E-35 4.6E-40 196.9 20.3 163 9-172 2-166 (167)
45 1u8z_A RAS-related protein RAL 100.0 1.9E-35 6.4E-40 196.2 20.3 164 9-173 3-167 (168)
46 3q72_A GTP-binding protein RAD 100.0 9.1E-36 3.1E-40 197.7 18.4 163 10-174 2-165 (166)
47 2a9k_A RAS-related protein RAL 100.0 1.8E-35 6E-40 199.7 20.1 169 6-175 14-183 (187)
48 3cph_A RAS-related protein SEC 100.0 2.9E-35 9.8E-40 202.8 21.3 165 8-173 18-182 (213)
49 1kao_A RAP2A; GTP-binding prot 100.0 1.2E-35 4.2E-40 196.9 18.7 164 9-173 2-166 (167)
50 2f7s_A C25KG, RAS-related prot 100.0 9.8E-36 3.3E-40 205.8 18.5 167 7-173 22-199 (217)
51 2bov_A RAla, RAS-related prote 100.0 4.3E-35 1.5E-39 200.8 21.6 166 7-173 11-177 (206)
52 1x3s_A RAS-related protein RAB 100.0 4.2E-35 1.5E-39 199.2 21.3 165 8-173 13-178 (195)
53 3clv_A RAB5 protein, putative; 100.0 7.8E-35 2.7E-39 199.2 22.7 164 7-173 4-204 (208)
54 1ky3_A GTP-binding protein YPT 100.0 1.6E-35 5.6E-40 199.1 18.1 169 6-174 4-179 (182)
55 2atx_A Small GTP binding prote 100.0 3.8E-35 1.3E-39 199.5 20.1 163 8-172 16-192 (194)
56 1vg8_A RAS-related protein RAB 100.0 4.9E-35 1.7E-39 200.8 20.6 167 6-173 4-175 (207)
57 2iwr_A Centaurin gamma 1; ANK 100.0 4.3E-35 1.5E-39 196.7 19.9 161 7-174 4-170 (178)
58 2atv_A RERG, RAS-like estrogen 100.0 2.6E-35 9E-40 200.7 19.1 167 7-175 25-193 (196)
59 2q3h_A RAS homolog gene family 100.0 4.8E-35 1.7E-39 200.0 20.0 168 6-175 16-197 (201)
60 2erx_A GTP-binding protein DI- 100.0 5.2E-35 1.8E-39 194.9 19.1 166 9-175 2-169 (172)
61 1m7b_A RND3/RHOE small GTP-bin 100.0 5.9E-35 2E-39 197.1 19.1 165 6-172 3-182 (184)
62 2g3y_A GTP-binding protein GEM 100.0 7E-35 2.4E-39 200.4 19.6 166 7-173 34-203 (211)
63 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-34 6.2E-39 195.1 21.1 165 8-174 2-167 (189)
64 4djt_A GTP-binding nuclear pro 100.0 1.5E-35 5.1E-40 205.0 15.9 171 5-175 6-177 (218)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-34 8.3E-39 194.0 21.3 165 8-174 3-181 (186)
66 4gzl_A RAS-related C3 botulinu 100.0 8.6E-35 2.9E-39 199.4 19.1 167 3-171 23-203 (204)
67 2yc2_C IFT27, small RAB-relate 100.0 1.1E-35 3.7E-40 204.1 14.6 166 8-173 18-192 (208)
68 2j0v_A RAC-like GTP-binding pr 100.0 5.8E-35 2E-39 201.2 18.3 167 6-174 5-181 (212)
69 2j1l_A RHO-related GTP-binding 100.0 9.6E-35 3.3E-39 200.6 18.8 167 8-176 32-212 (214)
70 3l0i_B RAS-related protein RAB 100.0 2E-37 6.7E-42 211.7 4.9 167 8-174 31-197 (199)
71 2gco_A H9, RHO-related GTP-bin 100.0 3.9E-34 1.3E-38 195.7 21.2 164 8-173 23-200 (201)
72 1gwn_A RHO-related GTP-binding 100.0 1.7E-34 5.8E-39 198.1 19.1 164 7-172 25-203 (205)
73 3con_A GTPase NRAS; structural 100.0 6E-34 2E-38 193.0 21.4 167 8-176 19-186 (190)
74 2gf0_A GTP-binding protein DI- 100.0 2.6E-34 8.8E-39 196.0 19.6 169 4-174 2-172 (199)
75 2fv8_A H6, RHO-related GTP-bin 100.0 7.3E-34 2.5E-38 195.1 21.3 166 8-175 23-202 (207)
76 3bwd_D RAC-like GTP-binding pr 100.0 4.3E-35 1.5E-39 197.1 13.5 165 7-173 5-181 (182)
77 2ce2_X GTPase HRAS; signaling 100.0 1.5E-33 5.1E-38 186.6 20.8 161 10-172 3-164 (166)
78 2cjw_A GTP-binding protein GEM 100.0 2.2E-33 7.6E-38 190.7 21.1 165 8-173 4-172 (192)
79 3gj0_A GTP-binding nuclear pro 100.0 9.8E-35 3.3E-39 201.4 13.9 166 5-173 10-175 (221)
80 3t1o_A Gliding protein MGLA; G 100.0 1.7E-34 5.8E-39 196.5 12.6 166 5-174 9-193 (198)
81 4bas_A ADP-ribosylation factor 100.0 4.6E-34 1.6E-38 194.7 13.9 167 5-175 12-191 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 8.5E-32 2.9E-36 183.8 23.1 166 8-173 3-168 (199)
83 1zd9_A ADP-ribosylation factor 100.0 8.5E-34 2.9E-38 192.1 13.0 162 8-175 20-187 (188)
84 1f6b_A SAR1; gtpases, N-termin 100.0 5.5E-33 1.9E-37 189.6 16.6 157 8-171 23-197 (198)
85 2h57_A ADP-ribosylation factor 100.0 1.7E-32 5.9E-37 185.9 18.5 162 8-175 19-189 (190)
86 1m2o_B GTP-binding protein SAR 100.0 2.3E-32 7.9E-37 185.4 19.0 157 8-171 21-190 (190)
87 1upt_A ARL1, ADP-ribosylation 100.0 4.1E-33 1.4E-37 185.7 14.7 159 8-173 5-169 (171)
88 1r8s_A ADP-ribosylation factor 100.0 1E-33 3.4E-38 187.5 11.1 157 11-174 1-163 (164)
89 1oix_A RAS-related protein RAB 100.0 1.8E-31 6E-36 181.2 22.1 165 7-171 26-190 (191)
90 1ksh_A ARF-like protein 2; sma 100.0 7.3E-32 2.5E-36 182.1 17.9 159 8-173 16-180 (186)
91 2b6h_A ADP-ribosylation factor 100.0 9.1E-33 3.1E-37 187.7 12.8 160 7-173 26-191 (192)
92 1fzq_A ADP-ribosylation factor 100.0 1E-32 3.5E-37 185.8 12.6 160 8-174 14-179 (181)
93 2h17_A ADP-ribosylation factor 100.0 2.7E-32 9.3E-37 183.6 14.6 158 7-171 18-181 (181)
94 1zj6_A ADP-ribosylation factor 100.0 6.4E-32 2.2E-36 182.6 16.4 160 8-174 14-179 (187)
95 2zej_A Dardarin, leucine-rich 100.0 8.6E-33 2.9E-37 186.6 11.0 166 10-176 2-181 (184)
96 2wkq_A NPH1-1, RAS-related C3 100.0 4.3E-31 1.5E-35 193.0 20.6 163 9-173 154-330 (332)
97 3th5_A RAS-related C3 botulinu 100.0 6.6E-35 2.3E-39 199.9 0.0 163 7-171 27-203 (204)
98 2x77_A ADP-ribosylation factor 100.0 7.4E-33 2.5E-37 187.5 9.1 162 8-176 20-187 (189)
99 3llu_A RAS-related GTP-binding 100.0 4E-32 1.4E-36 185.0 12.5 164 5-171 15-195 (196)
100 1moz_A ARL1, ADP-ribosylation 100.0 1.8E-32 6E-37 184.6 8.0 159 8-173 16-180 (183)
101 2fh5_B SR-beta, signal recogni 100.0 2E-30 6.8E-35 178.8 16.9 162 7-171 4-214 (214)
102 3c5h_A Glucocorticoid receptor 100.0 5.9E-32 2E-36 191.1 7.0 166 5-172 14-254 (255)
103 2wji_A Ferrous iron transport 100.0 2.3E-30 7.9E-35 171.8 14.0 154 10-172 3-164 (165)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 1.1E-29 3.8E-34 183.8 16.1 160 9-172 2-180 (307)
105 2lkc_A Translation initiation 100.0 1E-29 3.4E-34 170.3 14.5 160 6-177 4-175 (178)
106 3lvq_E ARF-GAP with SH3 domain 100.0 5.1E-30 1.7E-34 196.6 13.3 161 8-175 320-486 (497)
107 2qu8_A Putative nucleolar GTP- 100.0 3.1E-29 1.1E-33 174.5 15.5 163 8-174 27-206 (228)
108 3o47_A ADP-ribosylation factor 100.0 1.7E-30 5.7E-35 189.6 9.0 159 9-174 164-328 (329)
109 1svi_A GTP-binding protein YSX 100.0 1.7E-29 6E-34 171.6 12.7 159 7-172 20-194 (195)
110 2wjg_A FEOB, ferrous iron tran 100.0 5.1E-29 1.8E-33 168.3 12.8 158 9-175 6-171 (188)
111 3r7w_B Gtpase2, GTP-binding pr 100.0 4.2E-30 1.4E-34 184.9 7.8 154 12-172 1-173 (331)
112 2cxx_A Probable GTP-binding pr 100.0 3.2E-29 1.1E-33 169.5 10.2 157 11-176 2-187 (190)
113 3a1s_A Iron(II) transport prot 100.0 2.8E-28 9.5E-33 172.3 15.0 157 7-172 2-166 (258)
114 2gj8_A MNME, tRNA modification 100.0 4.1E-29 1.4E-33 166.8 9.4 156 9-174 3-167 (172)
115 2dyk_A GTP-binding protein; GT 100.0 1.6E-28 5.6E-33 161.8 12.1 150 11-171 2-160 (161)
116 3dpu_A RAB family protein; roc 100.0 3E-29 1E-33 193.8 8.6 164 7-174 38-209 (535)
117 3iev_A GTP-binding protein ERA 100.0 3.8E-28 1.3E-32 175.8 13.4 165 5-173 5-182 (308)
118 3b1v_A Ferrous iron uptake tra 100.0 2.2E-28 7.6E-33 173.8 10.6 154 9-172 2-163 (272)
119 3pqc_A Probable GTP-binding pr 100.0 2.5E-27 8.4E-32 160.7 14.6 157 7-173 20-194 (195)
120 3iby_A Ferrous iron transport 100.0 3.3E-28 1.1E-32 171.7 10.5 151 11-170 2-164 (256)
121 3i8s_A Ferrous iron transport 99.9 8.5E-28 2.9E-32 171.3 10.3 156 9-173 2-169 (274)
122 4dhe_A Probable GTP-binding pr 99.9 2E-27 6.9E-32 164.6 10.4 164 7-174 26-212 (223)
123 3k53_A Ferrous iron transport 99.9 7.3E-27 2.5E-31 166.4 12.7 157 9-173 2-166 (271)
124 1wf3_A GTP-binding protein; GT 99.9 1.1E-26 3.8E-31 167.3 10.9 157 8-172 5-172 (301)
125 1nrj_B SR-beta, signal recogni 99.9 1.4E-27 4.8E-32 164.9 5.7 144 7-159 9-170 (218)
126 3gee_A MNME, tRNA modification 99.9 5.9E-26 2E-30 172.2 12.4 157 9-172 232-397 (476)
127 2hjg_A GTP-binding protein ENG 99.9 7E-26 2.4E-30 171.0 11.2 161 8-174 173-350 (436)
128 2e87_A Hypothetical protein PH 99.9 9.8E-25 3.3E-29 161.0 16.3 161 8-173 165-336 (357)
129 4dcu_A GTP-binding protein ENG 99.9 1.6E-25 5.4E-30 170.0 11.3 161 8-174 193-370 (456)
130 1cip_A Protein (guanine nucleo 99.9 9.6E-26 3.3E-30 165.2 9.7 125 50-176 186-347 (353)
131 3sjy_A Translation initiation 99.9 9.7E-25 3.3E-29 163.3 14.3 167 5-174 3-193 (403)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-25 4E-30 164.2 8.9 159 12-175 160-332 (342)
133 3qq5_A Small GTP-binding prote 99.9 3.3E-26 1.1E-30 171.1 5.7 156 8-172 32-195 (423)
134 2xtz_A Guanine nucleotide-bind 99.9 1.6E-24 5.5E-29 158.7 11.6 118 57-174 181-346 (354)
135 3ohm_A Guanine nucleotide-bind 99.9 6.4E-24 2.2E-28 153.6 14.4 126 49-176 159-321 (327)
136 1s0u_A EIF-2-gamma, translatio 99.9 2.7E-23 9.2E-28 155.7 18.1 161 7-173 5-198 (408)
137 1mky_A Probable GTP-binding pr 99.9 8.4E-24 2.9E-28 159.8 14.0 150 11-172 2-165 (439)
138 1ega_A Protein (GTP-binding pr 99.9 4.3E-24 1.5E-28 154.0 11.6 158 8-172 6-174 (301)
139 1wb1_A Translation elongation 99.9 1.3E-23 4.4E-28 160.1 14.7 156 8-172 17-188 (482)
140 1xzp_A Probable tRNA modificat 99.9 2.4E-24 8.3E-29 163.5 10.7 152 10-172 243-404 (482)
141 1kk1_A EIF2gamma; initiation o 99.9 1.5E-23 5E-28 157.3 14.8 163 5-173 5-200 (410)
142 3cb4_D GTP-binding protein LEP 99.9 1.9E-23 6.5E-28 162.0 15.2 160 9-174 3-183 (599)
143 1zcb_A G alpha I/13; GTP-bindi 99.9 1.2E-23 4E-28 154.7 12.8 118 58-175 200-355 (362)
144 3j2k_7 ERF3, eukaryotic polype 99.9 4.6E-23 1.6E-27 155.6 15.6 154 7-165 14-217 (439)
145 2qtf_A Protein HFLX, GTP-bindi 99.9 4.1E-23 1.4E-27 152.1 14.9 162 10-174 178-355 (364)
146 2ywe_A GTP-binding protein LEP 99.9 4.3E-23 1.5E-27 159.8 15.7 161 8-174 4-185 (600)
147 2hjg_A GTP-binding protein ENG 99.9 2.3E-24 7.9E-29 162.7 8.2 154 10-173 3-165 (436)
148 3geh_A MNME, tRNA modification 99.9 3.5E-24 1.2E-28 162.0 8.6 154 9-174 223-385 (462)
149 3t5d_A Septin-7; GTP-binding p 99.9 4.7E-24 1.6E-28 152.1 8.5 162 7-172 5-203 (274)
150 3lxx_A GTPase IMAP family memb 99.9 2.7E-23 9.4E-28 145.4 12.3 163 7-173 26-214 (239)
151 2xtp_A GTPase IMAP family memb 99.9 2.5E-23 8.5E-28 147.3 11.4 162 8-173 20-208 (260)
152 3lxw_A GTPase IMAP family memb 99.9 2.8E-23 9.6E-28 145.9 10.5 164 8-173 19-208 (247)
153 3p26_A Elongation factor 1 alp 99.9 2.3E-23 7.9E-28 159.0 10.8 153 8-162 31-227 (483)
154 1mky_A Probable GTP-binding pr 99.9 7.5E-23 2.6E-27 154.6 13.5 160 9-174 179-356 (439)
155 3izy_P Translation initiation 99.9 2E-25 6.8E-30 170.9 -0.7 160 9-173 3-168 (537)
156 2ged_A SR-beta, signal recogni 99.9 1.6E-23 5.5E-28 141.9 8.3 117 7-132 45-173 (193)
157 1d2e_A Elongation factor TU (E 99.9 5.3E-23 1.8E-27 153.6 10.4 161 9-173 2-195 (397)
158 4fid_A G protein alpha subunit 99.9 4.6E-23 1.6E-27 149.6 9.5 116 58-173 160-328 (340)
159 2c78_A Elongation factor TU-A; 99.9 2.3E-23 7.9E-28 156.0 7.9 163 6-172 7-211 (405)
160 1zun_B Sulfate adenylate trans 99.9 5.3E-23 1.8E-27 155.2 9.8 153 8-163 22-214 (434)
161 2qag_A Septin-2, protein NEDD5 99.9 9E-24 3.1E-28 155.8 5.4 159 8-172 35-232 (361)
162 1azs_C GS-alpha; complex (lyas 99.9 4.6E-22 1.6E-26 147.4 13.9 116 59-174 217-386 (402)
163 1jny_A EF-1-alpha, elongation 99.9 7.8E-24 2.7E-28 159.7 4.4 154 8-164 4-204 (435)
164 2elf_A Protein translation elo 99.9 6.9E-23 2.4E-27 151.3 8.7 145 12-172 23-179 (370)
165 1g7s_A Translation initiation 99.9 6.4E-22 2.2E-26 153.6 13.7 157 9-172 4-217 (594)
166 3tr5_A RF-3, peptide chain rel 99.9 1.7E-22 5.7E-27 155.1 10.2 116 8-129 11-148 (528)
167 4dcu_A GTP-binding protein ENG 99.9 8.6E-23 2.9E-27 155.0 8.3 155 9-173 22-185 (456)
168 1zo1_I IF2, translation initia 99.9 1.3E-23 4.6E-28 159.6 2.3 155 8-171 2-165 (501)
169 3avx_A Elongation factor TS, e 99.9 5.3E-22 1.8E-26 161.2 10.2 162 7-172 293-485 (1289)
170 3izq_1 HBS1P, elongation facto 99.9 9.5E-23 3.2E-27 159.0 5.5 155 7-163 164-362 (611)
171 1r5b_A Eukaryotic peptide chai 99.9 6.6E-23 2.2E-27 155.8 4.2 156 7-164 40-243 (467)
172 1f60_A Elongation factor EEF1A 99.9 3.2E-23 1.1E-27 157.1 1.8 152 7-163 4-202 (458)
173 1pui_A ENGB, probable GTP-bind 99.9 3.9E-21 1.3E-25 131.8 10.7 159 8-173 24-199 (210)
174 2aka_B Dynamin-1; fusion prote 99.8 7.9E-22 2.7E-26 142.2 6.2 160 8-171 24-251 (299)
175 3mca_A HBS1, elongation factor 99.8 1.2E-22 4E-27 158.0 0.4 162 7-171 174-395 (592)
176 2dy1_A Elongation factor G; tr 99.8 3.2E-20 1.1E-24 146.3 12.9 117 8-128 7-139 (665)
177 1udx_A The GTP-binding protein 99.8 5.2E-20 1.8E-24 137.4 12.9 160 12-175 159-327 (416)
178 3def_A T7I23.11 protein; chlor 99.8 1.3E-19 4.6E-24 128.3 13.7 120 8-130 34-166 (262)
179 1dar_A EF-G, elongation factor 99.8 6.1E-20 2.1E-24 145.2 11.7 117 7-129 9-143 (691)
180 2j69_A Bacterial dynamin-like 99.8 9.4E-20 3.2E-24 144.2 12.6 162 9-173 68-325 (695)
181 2h5e_A Peptide chain release f 99.8 2.2E-19 7.6E-24 138.0 13.4 118 8-129 11-148 (529)
182 1h65_A Chloroplast outer envel 99.8 1.6E-19 5.3E-24 128.5 10.7 121 8-131 37-170 (270)
183 2qnr_A Septin-2, protein NEDD5 99.8 8.5E-21 2.9E-25 136.8 4.1 160 8-172 16-213 (301)
184 2rdo_7 EF-G, elongation factor 99.8 1.6E-18 5.5E-23 137.3 17.0 125 1-129 1-148 (704)
185 3t34_A Dynamin-related protein 99.8 1.4E-20 4.9E-25 138.9 5.0 155 10-166 34-254 (360)
186 2xex_A Elongation factor G; GT 99.8 2.9E-19 9.9E-24 141.4 12.4 123 1-129 1-141 (693)
187 1u0l_A Probable GTPase ENGC; p 99.8 2.2E-20 7.4E-25 134.7 4.7 137 25-172 32-172 (301)
188 1jwy_B Dynamin A GTPase domain 99.8 1.8E-19 6.2E-24 130.8 9.4 111 59-172 131-261 (315)
189 1wxq_A GTP-binding protein; st 99.8 2.7E-20 9.3E-25 138.5 4.4 85 11-95 1-114 (397)
190 2qag_C Septin-7; cell cycle, c 99.8 2.1E-19 7.1E-24 134.2 8.9 160 8-171 29-225 (418)
191 2wsm_A Hydrogenase expression/ 99.8 2.2E-18 7.5E-23 119.0 7.6 156 9-175 29-216 (221)
192 2hf9_A Probable hydrogenase ni 99.7 3.4E-20 1.2E-24 128.5 -2.7 155 9-174 37-225 (226)
193 1jal_A YCHF protein; nucleotid 99.7 7E-17 2.4E-21 118.3 14.6 163 10-172 2-278 (363)
194 3p32_A Probable GTPase RV1496/ 99.7 4.8E-18 1.6E-22 125.1 7.3 103 59-173 172-284 (355)
195 2x2e_A Dynamin-1; nitration, h 99.7 2.2E-19 7.7E-24 132.2 -1.5 158 9-169 30-254 (353)
196 3vqt_A RF-3, peptide chain rel 99.7 4.8E-16 1.6E-20 120.0 15.0 115 9-129 30-166 (548)
197 1n0u_A EF-2, elongation factor 99.7 8.3E-17 2.8E-21 129.8 9.3 119 7-129 16-164 (842)
198 2www_A Methylmalonic aciduria 99.7 9.9E-18 3.4E-22 123.1 2.9 102 59-172 167-278 (349)
199 2qpt_A EH domain-containing pr 99.7 2.8E-17 9.5E-22 127.0 5.2 120 8-132 63-235 (550)
200 2dby_A GTP-binding protein; GD 99.7 1.1E-15 3.6E-20 112.6 11.6 84 11-94 2-111 (368)
201 4fn5_A EF-G 1, elongation fact 99.6 4.5E-15 1.5E-19 118.0 14.4 124 1-128 4-150 (709)
202 4a9a_A Ribosome-interacting GT 99.6 1.2E-14 4E-19 107.1 13.9 154 10-167 72-242 (376)
203 1yrb_A ATP(GTP)binding protein 99.6 2.7E-15 9.4E-20 106.0 10.1 111 59-172 109-256 (262)
204 2p67_A LAO/AO transport system 99.6 2.1E-16 7.1E-21 115.8 4.1 103 59-172 149-260 (341)
205 3j25_A Tetracycline resistance 99.6 1.8E-16 6.1E-21 124.6 2.1 116 10-129 2-133 (638)
206 3zvr_A Dynamin-1; hydrolase, D 99.6 3.5E-15 1.2E-19 118.1 7.9 156 9-170 50-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.6 9.9E-15 3.4E-19 105.2 9.2 101 69-172 66-168 (302)
208 3l82_B F-box only protein 4; T 99.5 3.9E-15 1.3E-19 100.1 5.0 106 67-175 110-225 (227)
209 2qm8_A GTPase/ATPase; G protei 99.5 1.6E-14 5.6E-19 105.5 8.2 103 59-172 148-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 8.5E-14 2.9E-18 103.0 5.7 88 9-96 21-130 (396)
211 3l2o_B F-box only protein 4; s 99.4 9.8E-14 3.4E-18 97.7 5.5 108 66-175 194-310 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.9E-12 1.3E-16 94.3 13.6 86 9-94 19-127 (392)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 6.3E-12 2.1E-16 92.9 0.9 143 10-160 162-318 (369)
214 3h2y_A GTPase family protein; 99.1 3.1E-10 1.1E-14 83.8 8.9 97 68-171 55-158 (368)
215 2j37_W Signal recognition part 99.1 3E-10 1E-14 86.8 8.6 151 9-170 100-310 (504)
216 3h2y_A GTPase family protein; 99.1 4.3E-12 1.5E-16 93.7 -1.9 136 10-153 160-310 (368)
217 2qag_B Septin-6, protein NEDD5 99.1 4.3E-10 1.5E-14 84.0 8.3 140 10-154 42-217 (427)
218 3sop_A Neuronal-specific septi 99.0 8.1E-10 2.8E-14 78.3 7.0 137 10-151 2-178 (270)
219 1tq4_A IIGP1, interferon-induc 99.0 1.1E-08 3.7E-13 76.4 13.1 157 10-173 69-253 (413)
220 1puj_A YLQF, conserved hypothe 99.0 7.3E-10 2.5E-14 79.0 6.0 100 63-172 3-105 (282)
221 3ec1_A YQEH GTPase; atnos1, at 98.9 6.4E-10 2.2E-14 82.2 4.8 98 68-172 57-161 (369)
222 1puj_A YLQF, conserved hypothe 98.8 4.8E-09 1.6E-13 74.8 5.2 59 8-70 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.7 3.4E-09 1.2E-13 74.8 2.6 57 11-71 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.6 1.5E-07 5.2E-12 70.7 7.5 91 59-161 183-279 (443)
225 3cnl_A YLQF, putative uncharac 98.5 4.5E-08 1.5E-12 69.0 2.6 94 66-170 4-98 (262)
226 2v3c_C SRP54, signal recogniti 98.5 6.4E-08 2.2E-12 72.8 3.5 84 58-152 180-271 (432)
227 1f5n_A Interferon-induced guan 98.4 2E-07 6.9E-12 72.5 5.3 65 7-71 35-103 (592)
228 1bif_A 6-phosphofructo-2-kinas 98.4 4.4E-08 1.5E-12 74.7 -0.3 114 8-126 37-160 (469)
229 3kl4_A SRP54, signal recogniti 98.3 9.1E-08 3.1E-12 71.8 1.1 91 58-160 179-277 (433)
230 1t9h_A YLOQ, probable GTPase E 98.3 1.6E-07 5.4E-12 67.6 2.2 90 75-167 79-171 (307)
231 1j8m_F SRP54, signal recogniti 98.3 1.3E-06 4.3E-11 62.7 6.3 92 58-162 180-280 (297)
232 3szr_A Interferon-induced GTP- 98.2 3.4E-06 1.2E-10 66.2 7.3 23 12-34 47-69 (608)
233 2rcn_A Probable GTPase ENGC; Y 98.2 8.2E-06 2.8E-10 59.8 8.4 86 79-168 127-214 (358)
234 3q5d_A Atlastin-1; G protein, 97.9 1.5E-05 5.1E-10 60.1 6.1 27 7-33 64-90 (447)
235 1ye8_A Protein THEP1, hypothet 97.9 7.8E-06 2.7E-10 54.2 3.5 23 11-33 1-23 (178)
236 1zp6_A Hypothetical protein AT 97.8 1.7E-05 5.8E-10 52.8 3.6 26 8-33 7-32 (191)
237 1ex7_A Guanylate kinase; subst 97.8 3.3E-06 1.1E-10 56.3 -0.3 21 13-33 4-24 (186)
238 1kgd_A CASK, peripheral plasma 97.7 2E-05 6.9E-10 52.2 3.3 24 10-33 5-28 (180)
239 4dzz_A Plasmid partitioning pr 97.7 6.7E-05 2.3E-09 50.5 5.8 66 59-128 76-143 (206)
240 1lvg_A Guanylate kinase, GMP k 97.7 2.4E-05 8.2E-10 52.7 3.3 23 10-32 4-26 (198)
241 4eun_A Thermoresistant glucoki 97.7 3.1E-05 1E-09 52.2 3.6 24 9-32 28-51 (200)
242 3tr0_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 51.9 3.3 23 11-33 8-30 (205)
243 3a00_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 51.3 3.2 21 13-33 4-24 (186)
244 3ney_A 55 kDa erythrocyte memb 97.6 5.2E-05 1.8E-09 51.0 3.9 25 9-33 18-42 (197)
245 1znw_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 52.0 3.2 23 11-33 21-43 (207)
246 2yv5_A YJEQ protein; hydrolase 97.6 0.00014 4.7E-09 52.3 6.3 23 11-34 166-188 (302)
247 4gp7_A Metallophosphoesterase; 97.6 3.1E-05 1.1E-09 50.9 2.6 20 12-31 11-30 (171)
248 1s96_A Guanylate kinase, GMP k 97.6 4.1E-05 1.4E-09 52.4 3.3 25 10-34 16-40 (219)
249 3c8u_A Fructokinase; YP_612366 97.6 4.8E-05 1.6E-09 51.6 3.5 25 8-32 20-44 (208)
250 1t9h_A YLOQ, probable GTPase E 97.6 1.6E-05 5.5E-10 57.1 0.9 25 10-34 173-197 (307)
251 1z6g_A Guanylate kinase; struc 97.6 4.8E-05 1.6E-09 52.0 3.2 24 10-33 23-46 (218)
252 1knq_A Gluconate kinase; ALFA/ 97.5 8.6E-05 2.9E-09 48.7 4.2 23 10-32 8-30 (175)
253 1htw_A HI0065; nucleotide-bind 97.5 6.3E-05 2.1E-09 48.8 3.2 25 10-34 33-57 (158)
254 2xxa_A Signal recognition part 97.5 0.00043 1.5E-08 52.2 8.2 83 58-151 183-272 (433)
255 3tau_A Guanylate kinase, GMP k 97.5 6.2E-05 2.1E-09 51.0 3.3 25 10-34 8-32 (208)
256 3asz_A Uridine kinase; cytidin 97.5 6.8E-05 2.3E-09 50.7 3.5 24 9-32 5-28 (211)
257 3lw7_A Adenylate kinase relate 97.5 6.4E-05 2.2E-09 49.1 3.3 20 11-30 2-21 (179)
258 3fb4_A Adenylate kinase; psych 97.5 6.9E-05 2.4E-09 50.9 3.5 22 11-32 1-22 (216)
259 1kag_A SKI, shikimate kinase I 97.5 6.8E-05 2.3E-09 49.1 3.3 23 11-33 5-27 (173)
260 3tif_A Uncharacterized ABC tra 97.5 5.4E-05 1.9E-09 52.4 2.9 22 12-33 33-54 (235)
261 3dl0_A Adenylate kinase; phosp 97.5 7.4E-05 2.5E-09 50.8 3.5 22 11-32 1-22 (216)
262 3cwq_A Para family chromosome 97.5 0.0011 3.6E-08 44.9 9.1 85 58-150 67-153 (209)
263 3sr0_A Adenylate kinase; phosp 97.5 8.3E-05 2.8E-09 50.4 3.5 22 11-32 1-22 (206)
264 2bdt_A BH3686; alpha-beta prot 97.5 7.7E-05 2.6E-09 49.6 3.2 21 12-32 4-24 (189)
265 3kb2_A SPBC2 prophage-derived 97.5 8.7E-05 3E-09 48.4 3.4 21 12-32 3-23 (173)
266 2j41_A Guanylate kinase; GMP, 97.5 9.4E-05 3.2E-09 49.8 3.7 25 10-34 6-30 (207)
267 1y63_A LMAJ004144AAA protein; 97.5 0.00011 3.9E-09 48.7 3.9 25 9-33 9-33 (184)
268 2onk_A Molybdate/tungstate ABC 97.4 8.1E-05 2.8E-09 51.7 3.3 22 12-33 26-47 (240)
269 2qor_A Guanylate kinase; phosp 97.4 8.3E-05 2.8E-09 50.2 3.3 24 10-33 12-35 (204)
270 2pcj_A ABC transporter, lipopr 97.4 6.7E-05 2.3E-09 51.5 2.7 22 12-33 32-53 (224)
271 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.8E-09 48.2 3.7 22 11-32 3-24 (181)
272 1sgw_A Putative ABC transporte 97.4 8.7E-05 3E-09 50.6 3.0 22 12-33 37-58 (214)
273 2bbw_A Adenylate kinase 4, AK4 97.4 0.00011 3.6E-09 51.2 3.5 22 10-31 27-48 (246)
274 2rcn_A Probable GTPase ENGC; Y 97.4 9.7E-05 3.3E-09 54.2 3.4 24 12-35 217-240 (358)
275 2i3b_A HCR-ntpase, human cance 97.4 9.9E-05 3.4E-09 49.3 3.2 22 12-33 3-24 (189)
276 3gfo_A Cobalt import ATP-bindi 97.4 8.6E-05 2.9E-09 52.6 3.0 22 12-33 36-57 (275)
277 1b0u_A Histidine permease; ABC 97.4 8.8E-05 3E-09 52.2 3.0 22 12-33 34-55 (262)
278 2jaq_A Deoxyguanosine kinase; 97.4 0.00012 4.1E-09 49.1 3.5 22 11-32 1-22 (205)
279 3cm0_A Adenylate kinase; ATP-b 97.4 0.00014 4.9E-09 48.1 3.9 23 10-32 4-26 (186)
280 2if2_A Dephospho-COA kinase; a 97.4 0.00011 3.8E-09 49.4 3.3 22 11-32 2-23 (204)
281 2cbz_A Multidrug resistance-as 97.4 0.0001 3.5E-09 51.1 3.1 22 12-33 33-54 (237)
282 2cdn_A Adenylate kinase; phosp 97.4 0.00016 5.5E-09 48.5 4.0 25 8-32 18-42 (201)
283 1g6h_A High-affinity branched- 97.4 9.4E-05 3.2E-09 51.9 2.9 22 12-33 35-56 (257)
284 2eyu_A Twitching motility prot 97.4 0.00011 3.9E-09 51.6 3.3 23 10-32 25-47 (261)
285 3t61_A Gluconokinase; PSI-biol 97.4 0.00012 4E-09 49.3 3.2 22 11-32 19-40 (202)
286 1mv5_A LMRA, multidrug resista 97.4 0.00011 3.8E-09 51.1 3.2 22 12-33 30-51 (243)
287 4g1u_C Hemin import ATP-bindin 97.4 9.5E-05 3.2E-09 52.1 2.8 22 12-33 39-60 (266)
288 1e4v_A Adenylate kinase; trans 97.4 0.00012 4.1E-09 49.7 3.2 22 11-32 1-22 (214)
289 2pze_A Cystic fibrosis transme 97.4 0.00012 4E-09 50.5 3.2 22 12-33 36-57 (229)
290 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.5E-09 47.9 3.3 22 11-32 4-25 (178)
291 2olj_A Amino acid ABC transpor 97.4 0.0001 3.6E-09 51.8 3.0 22 12-33 52-73 (263)
292 2ff7_A Alpha-hemolysin translo 97.4 0.00011 3.9E-09 51.2 3.1 22 12-33 37-58 (247)
293 1nks_A Adenylate kinase; therm 97.4 0.00014 4.7E-09 48.3 3.4 22 11-32 2-23 (194)
294 1ji0_A ABC transporter; ATP bi 97.4 0.00011 3.6E-09 51.1 2.9 22 12-33 34-55 (240)
295 3vaa_A Shikimate kinase, SK; s 97.4 0.00015 5.1E-09 48.7 3.6 23 10-32 25-47 (199)
296 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00012 4.2E-09 51.1 3.2 22 12-33 31-52 (250)
297 1vpl_A ABC transporter, ATP-bi 97.3 0.00011 3.8E-09 51.5 3.0 22 12-33 43-64 (256)
298 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.5E-09 48.0 3.6 23 10-32 5-27 (193)
299 2qi9_C Vitamin B12 import ATP- 97.3 0.00011 3.9E-09 51.2 3.0 22 12-33 28-49 (249)
300 2zu0_C Probable ATP-dependent 97.3 0.00013 4.4E-09 51.5 3.3 22 12-33 48-69 (267)
301 3ec2_A DNA replication protein 97.3 0.00012 4.2E-09 48.2 3.0 24 10-33 38-61 (180)
302 2v9p_A Replication protein E1; 97.3 0.00014 4.8E-09 52.2 3.4 23 10-32 126-148 (305)
303 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5.2E-09 49.5 3.5 22 11-32 6-27 (227)
304 1ukz_A Uridylate kinase; trans 97.3 0.00024 8.1E-09 47.7 4.4 24 9-32 14-37 (203)
305 3tlx_A Adenylate kinase 2; str 97.3 0.00019 6.5E-09 49.8 4.0 24 9-32 28-51 (243)
306 3umf_A Adenylate kinase; rossm 97.3 0.00023 7.8E-09 48.6 4.3 20 13-32 32-51 (217)
307 1kht_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 47.9 3.5 22 11-32 4-25 (192)
308 3b85_A Phosphate starvation-in 97.3 9.9E-05 3.4E-09 50.1 2.5 22 12-33 24-45 (208)
309 2pt5_A Shikimate kinase, SK; a 97.3 0.00017 5.7E-09 46.9 3.5 22 11-32 1-22 (168)
310 3uie_A Adenylyl-sulfate kinase 97.3 0.00019 6.6E-09 48.2 3.9 24 9-32 24-47 (200)
311 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 49.2 3.6 23 10-32 4-26 (220)
312 2ghi_A Transport protein; mult 97.3 0.00014 4.6E-09 51.2 3.1 22 12-33 48-69 (260)
313 2ihy_A ABC transporter, ATP-bi 97.3 0.00014 4.7E-09 51.7 3.2 22 12-33 49-70 (279)
314 2yvu_A Probable adenylyl-sulfa 97.3 0.00027 9.2E-09 46.8 4.3 25 8-32 11-35 (186)
315 2plr_A DTMP kinase, probable t 97.3 0.0002 6.9E-09 48.3 3.8 23 10-32 4-26 (213)
316 3end_A Light-independent proto 97.3 0.0076 2.6E-07 43.1 12.2 85 58-151 156-242 (307)
317 1zd8_A GTP:AMP phosphotransfer 97.3 0.00016 5.6E-09 49.5 3.3 23 10-32 7-29 (227)
318 2ixe_A Antigen peptide transpo 97.3 0.00015 5.1E-09 51.3 3.1 22 12-33 47-68 (271)
319 1jjv_A Dephospho-COA kinase; P 97.3 0.00019 6.5E-09 48.4 3.6 22 11-32 3-24 (206)
320 2nq2_C Hypothetical ABC transp 97.3 0.00014 4.8E-09 50.9 2.9 22 12-33 33-54 (253)
321 2yz2_A Putative ABC transporte 97.3 0.00014 4.8E-09 51.3 2.9 22 12-33 35-56 (266)
322 2qt1_A Nicotinamide riboside k 97.3 0.00024 8.2E-09 47.9 4.0 25 9-33 20-44 (207)
323 3aez_A Pantothenate kinase; tr 97.3 0.00025 8.4E-09 51.2 4.1 26 7-32 87-112 (312)
324 2ehv_A Hypothetical protein PH 97.3 0.00018 6.1E-09 49.8 3.2 21 11-31 31-51 (251)
325 3iij_A Coilin-interacting nucl 97.3 0.00024 8.1E-09 46.8 3.7 23 10-32 11-33 (180)
326 1tev_A UMP-CMP kinase; ploop, 97.3 0.00024 8.2E-09 47.2 3.7 23 10-32 3-25 (196)
327 2chg_A Replication factor C sm 97.3 0.0011 3.9E-08 44.5 7.2 21 12-32 40-60 (226)
328 4a74_A DNA repair and recombin 97.2 0.00017 5.8E-09 49.3 3.0 23 11-33 26-48 (231)
329 2pjz_A Hypothetical protein ST 97.2 0.00018 6.2E-09 50.6 3.2 23 12-34 32-54 (263)
330 1np6_A Molybdopterin-guanine d 97.2 0.00021 7.2E-09 47.1 3.3 23 11-33 7-29 (174)
331 1u0l_A Probable GTPase ENGC; p 97.2 0.00015 5.1E-09 52.0 2.8 24 11-34 170-193 (301)
332 3trf_A Shikimate kinase, SK; a 97.2 0.00023 8E-09 47.0 3.5 23 10-32 5-27 (185)
333 3lnc_A Guanylate kinase, GMP k 97.2 0.00011 3.7E-09 50.6 1.9 23 11-33 28-51 (231)
334 2xb4_A Adenylate kinase; ATP-b 97.2 0.00023 7.9E-09 48.7 3.5 22 11-32 1-22 (223)
335 3co5_A Putative two-component 97.2 0.00064 2.2E-08 43.1 5.3 23 10-32 27-49 (143)
336 2v54_A DTMP kinase, thymidylat 97.2 0.00027 9.2E-09 47.4 3.7 24 10-33 4-27 (204)
337 1via_A Shikimate kinase; struc 97.2 0.00021 7.3E-09 46.8 3.1 21 12-32 6-26 (175)
338 2jeo_A Uridine-cytidine kinase 97.2 0.00027 9.2E-09 49.1 3.8 23 10-32 25-47 (245)
339 1qf9_A UMP/CMP kinase, protein 97.2 0.00034 1.1E-08 46.4 4.0 22 11-32 7-28 (194)
340 1gvn_B Zeta; postsegregational 97.2 0.00028 9.6E-09 50.3 3.8 24 9-32 32-55 (287)
341 2c95_A Adenylate kinase 1; tra 97.2 0.00027 9.2E-09 47.1 3.5 23 10-32 9-31 (196)
342 2pbr_A DTMP kinase, thymidylat 97.2 0.00027 9.2E-09 47.0 3.4 22 11-32 1-22 (195)
343 1ak2_A Adenylate kinase isoenz 97.2 0.0003 1E-08 48.5 3.7 24 9-32 15-38 (233)
344 1lw7_A Transcriptional regulat 97.2 0.00019 6.6E-09 52.9 2.9 24 10-33 170-193 (365)
345 3jvv_A Twitching mobility prot 97.2 0.00023 8E-09 52.2 3.2 21 12-32 125-145 (356)
346 2wwf_A Thymidilate kinase, put 97.2 0.00034 1.2E-08 47.2 3.8 23 10-32 10-32 (212)
347 1zak_A Adenylate kinase; ATP:A 97.2 0.00024 8.2E-09 48.5 3.1 23 10-32 5-27 (222)
348 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00022 7.6E-09 52.3 3.0 23 12-34 32-54 (359)
349 1odf_A YGR205W, hypothetical 3 97.2 0.00041 1.4E-08 49.5 4.3 26 7-32 28-53 (290)
350 2x8a_A Nuclear valosin-contain 97.2 0.00026 9E-09 50.1 3.2 20 13-32 47-66 (274)
351 3be4_A Adenylate kinase; malar 97.1 0.0003 1E-08 47.9 3.4 23 10-32 5-27 (217)
352 1uf9_A TT1252 protein; P-loop, 97.1 0.00034 1.2E-08 46.8 3.6 25 9-33 7-31 (203)
353 2bbs_A Cystic fibrosis transme 97.1 0.00023 7.9E-09 50.8 2.9 22 12-33 66-87 (290)
354 3tui_C Methionine import ATP-b 97.1 0.00027 9.3E-09 52.0 3.3 23 12-34 56-78 (366)
355 3tqc_A Pantothenate kinase; bi 97.1 0.00047 1.6E-08 49.9 4.5 25 8-32 90-114 (321)
356 1z47_A CYSA, putative ABC-tran 97.1 0.00027 9.1E-09 51.9 3.2 23 12-34 43-65 (355)
357 1sq5_A Pantothenate kinase; P- 97.1 0.00037 1.3E-08 50.1 3.9 25 8-32 78-102 (308)
358 1nn5_A Similar to deoxythymidy 97.1 0.00032 1.1E-08 47.4 3.5 23 10-32 9-31 (215)
359 3uc9_A Increased recombination 97.1 0.0011 3.7E-08 45.4 5.9 24 10-33 27-52 (233)
360 1rz3_A Hypothetical protein rb 97.1 0.00042 1.4E-08 46.6 4.0 25 8-32 20-44 (201)
361 2p5t_B PEZT; postsegregational 97.1 0.00028 9.5E-09 49.3 3.2 25 8-32 30-54 (253)
362 2yyz_A Sugar ABC transporter, 97.1 0.00028 9.6E-09 51.8 3.2 22 12-33 31-52 (359)
363 3nh6_A ATP-binding cassette SU 97.1 0.00016 5.5E-09 52.0 1.8 22 11-32 81-102 (306)
364 2it1_A 362AA long hypothetical 97.1 0.0003 1E-08 51.8 3.3 23 12-34 31-53 (362)
365 3rlf_A Maltose/maltodextrin im 97.1 0.0003 1E-08 52.0 3.3 23 12-34 31-53 (381)
366 2f1r_A Molybdopterin-guanine d 97.1 0.00013 4.6E-09 47.9 1.3 22 12-33 4-25 (171)
367 1ixz_A ATP-dependent metallopr 97.1 0.00033 1.1E-08 48.8 3.3 22 12-33 51-72 (254)
368 2z0h_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 46.4 3.5 21 12-32 2-22 (197)
369 1rj9_A FTSY, signal recognitio 97.1 0.00044 1.5E-08 49.7 4.0 23 10-32 102-124 (304)
370 2vli_A Antibiotic resistance p 97.1 0.00022 7.5E-09 47.0 2.3 23 10-32 5-27 (183)
371 2ze6_A Isopentenyl transferase 97.1 0.00034 1.2E-08 48.9 3.3 21 12-32 3-23 (253)
372 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00042 1.4E-08 48.6 3.8 22 11-32 5-26 (260)
373 2kjq_A DNAA-related protein; s 97.1 0.0002 6.9E-09 45.9 1.9 23 11-33 37-59 (149)
374 2bwj_A Adenylate kinase 5; pho 97.1 0.00036 1.2E-08 46.6 3.3 23 10-32 12-34 (199)
375 1g29_1 MALK, maltose transport 97.1 0.00032 1.1E-08 51.8 3.2 23 12-34 31-53 (372)
376 4e22_A Cytidylate kinase; P-lo 97.1 0.0004 1.4E-08 48.5 3.6 22 10-31 27-48 (252)
377 1v43_A Sugar-binding transport 97.1 0.00033 1.1E-08 51.7 3.3 22 12-33 39-60 (372)
378 2pez_A Bifunctional 3'-phospho 97.1 0.00049 1.7E-08 45.3 3.8 24 9-32 4-27 (179)
379 2iyv_A Shikimate kinase, SK; t 97.1 0.00034 1.1E-08 46.2 3.0 22 11-32 3-24 (184)
380 1e6c_A Shikimate kinase; phosp 97.1 0.0004 1.4E-08 45.3 3.2 21 12-32 4-24 (173)
381 3b9q_A Chloroplast SRP recepto 97.1 0.00038 1.3E-08 50.0 3.3 23 10-32 100-122 (302)
382 2ewv_A Twitching motility prot 97.1 0.00039 1.3E-08 51.4 3.4 23 10-32 136-158 (372)
383 1jbk_A CLPB protein; beta barr 97.0 0.00048 1.6E-08 45.3 3.5 24 10-33 43-66 (195)
384 2gza_A Type IV secretion syste 97.0 0.00034 1.2E-08 51.5 2.9 23 11-33 176-198 (361)
385 1p9r_A General secretion pathw 97.0 0.0004 1.4E-08 52.1 3.2 23 11-33 168-190 (418)
386 1vht_A Dephospho-COA kinase; s 97.0 0.00061 2.1E-08 46.3 3.9 23 10-32 4-26 (218)
387 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00031 1.1E-08 51.1 2.5 23 11-33 172-194 (330)
388 3foz_A TRNA delta(2)-isopenten 97.0 0.00064 2.2E-08 48.8 4.0 32 1-32 1-32 (316)
389 3e70_C DPA, signal recognition 97.0 0.00063 2.2E-08 49.4 4.0 90 60-161 213-308 (328)
390 1sxj_E Activator 1 40 kDa subu 97.0 0.003 1E-07 46.0 7.7 20 13-32 39-58 (354)
391 3d31_A Sulfate/molybdate ABC t 97.0 0.00026 9E-09 51.8 2.0 23 12-34 28-50 (348)
392 1zuh_A Shikimate kinase; alpha 97.0 0.00059 2E-08 44.4 3.5 21 12-32 9-29 (168)
393 2vp4_A Deoxynucleoside kinase; 97.0 0.00049 1.7E-08 47.3 3.3 26 8-33 18-43 (230)
394 1iy2_A ATP-dependent metallopr 97.0 0.00049 1.7E-08 48.7 3.3 22 12-33 75-96 (278)
395 1uj2_A Uridine-cytidine kinase 97.0 0.00064 2.2E-08 47.4 3.7 24 9-32 21-44 (252)
396 1xjc_A MOBB protein homolog; s 97.0 0.00059 2E-08 44.7 3.3 22 11-32 5-26 (169)
397 1in4_A RUVB, holliday junction 97.0 0.0005 1.7E-08 50.0 3.3 23 11-33 52-74 (334)
398 3gd7_A Fusion complex of cysti 97.0 0.00045 1.5E-08 51.3 3.0 21 12-32 49-69 (390)
399 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00055 1.9E-08 46.7 3.2 23 11-33 24-46 (235)
400 2f6r_A COA synthase, bifunctio 96.9 0.00073 2.5E-08 48.0 3.9 24 9-32 74-97 (281)
401 3kta_A Chromosome segregation 96.9 0.00054 1.9E-08 45.1 3.1 21 12-32 28-48 (182)
402 1m7g_A Adenylylsulfate kinase; 96.9 0.00077 2.6E-08 45.6 3.9 24 9-32 24-47 (211)
403 1gtv_A TMK, thymidylate kinase 96.9 0.0002 6.9E-09 48.4 0.9 21 12-32 2-22 (214)
404 4eaq_A DTMP kinase, thymidylat 96.9 0.00088 3E-08 46.1 4.2 25 9-33 25-49 (229)
405 3r20_A Cytidylate kinase; stru 96.9 0.00068 2.3E-08 46.8 3.6 24 9-32 8-31 (233)
406 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00046 1.6E-08 52.4 2.9 24 10-33 138-161 (460)
407 2oap_1 GSPE-2, type II secreti 96.9 0.00047 1.6E-08 53.1 2.9 23 11-33 261-283 (511)
408 1oxx_K GLCV, glucose, ABC tran 96.9 0.00026 9E-09 51.9 1.3 23 12-34 33-55 (353)
409 2og2_A Putative signal recogni 96.9 0.00064 2.2E-08 50.0 3.3 23 10-32 157-179 (359)
410 1lv7_A FTSH; alpha/beta domain 96.9 0.00071 2.4E-08 47.2 3.3 24 10-33 45-68 (257)
411 2grj_A Dephospho-COA kinase; T 96.9 0.00096 3.3E-08 44.6 3.8 24 9-32 11-34 (192)
412 3nwj_A ATSK2; P loop, shikimat 96.9 0.00068 2.3E-08 47.3 3.1 23 10-32 48-70 (250)
413 2yhs_A FTSY, cell division pro 96.8 0.00071 2.4E-08 51.7 3.3 23 10-32 293-315 (503)
414 2p65_A Hypothetical protein PF 96.8 0.00059 2E-08 44.7 2.6 24 10-33 43-66 (187)
415 1cr0_A DNA primase/helicase; R 96.8 0.00068 2.3E-08 48.3 3.0 22 12-33 37-58 (296)
416 3bos_A Putative DNA replicatio 96.8 0.00088 3E-08 45.9 3.5 23 10-32 52-74 (242)
417 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00079 2.7E-08 43.1 3.0 19 13-31 26-44 (149)
418 1q3t_A Cytidylate kinase; nucl 96.8 0.001 3.5E-08 45.9 3.7 26 7-32 13-38 (236)
419 2w58_A DNAI, primosome compone 96.8 0.00096 3.3E-08 44.7 3.5 23 11-33 55-77 (202)
420 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.0045 1.6E-07 45.6 7.3 21 10-31 24-44 (365)
421 2cvh_A DNA repair and recombin 96.8 0.00092 3.1E-08 45.2 3.2 23 10-32 20-42 (220)
422 1nij_A Hypothetical protein YJ 96.8 0.00055 1.9E-08 49.5 2.2 24 11-34 5-28 (318)
423 2obl_A ESCN; ATPase, hydrolase 96.8 0.00089 3E-08 49.0 3.3 24 11-34 72-95 (347)
424 1n0w_A DNA repair protein RAD5 96.8 0.00094 3.2E-08 45.9 3.3 23 11-33 25-47 (243)
425 1ltq_A Polynucleotide kinase; 96.8 0.0011 3.8E-08 47.3 3.7 22 11-32 3-24 (301)
426 3pfi_A Holliday junction ATP-d 96.8 0.0054 1.8E-07 44.4 7.4 24 10-33 55-78 (338)
427 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00097 3.3E-08 51.7 3.5 25 10-34 47-71 (538)
428 3d3q_A TRNA delta(2)-isopenten 96.7 0.0013 4.5E-08 47.9 3.9 22 11-32 8-29 (340)
429 3gmt_A Adenylate kinase; ssgci 96.7 0.0012 4.1E-08 45.4 3.5 24 9-32 7-30 (230)
430 3euj_A Chromosome partition pr 96.7 0.001 3.4E-08 50.8 3.3 22 11-32 30-51 (483)
431 3t15_A Ribulose bisphosphate c 96.7 0.0015 5E-08 46.7 3.8 25 9-33 35-59 (293)
432 3syl_A Protein CBBX; photosynt 96.7 0.0014 4.9E-08 46.8 3.8 25 8-32 65-89 (309)
433 1svm_A Large T antigen; AAA+ f 96.7 0.0014 4.6E-08 48.6 3.7 24 9-32 168-191 (377)
434 3n70_A Transport activator; si 96.7 0.0014 4.8E-08 41.6 3.3 24 10-33 24-47 (145)
435 3k9g_A PF-32 protein; ssgcid, 96.7 0.0085 2.9E-07 41.9 7.6 65 58-126 144-208 (267)
436 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0049 1.7E-07 46.6 6.6 25 7-31 64-88 (457)
437 3h4m_A Proteasome-activating n 96.6 0.0016 5.3E-08 46.1 3.6 24 10-33 51-74 (285)
438 3crm_A TRNA delta(2)-isopenten 96.6 0.0019 6.4E-08 46.7 3.9 22 11-32 6-27 (323)
439 2dpy_A FLII, flagellum-specifi 96.6 0.0013 4.6E-08 49.6 3.3 24 11-34 158-181 (438)
440 3j16_B RLI1P; ribosome recycli 96.6 0.0013 4.4E-08 51.7 3.3 25 10-34 103-127 (608)
441 3b9p_A CG5977-PA, isoform A; A 96.6 0.0016 5.6E-08 46.3 3.6 23 10-32 54-76 (297)
442 1njg_A DNA polymerase III subu 96.6 0.0015 5.1E-08 44.6 3.2 21 12-32 47-67 (250)
443 3b60_A Lipid A export ATP-bind 96.6 0.0012 4E-08 51.7 2.9 22 12-33 371-392 (582)
444 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0019 6.4E-08 45.0 3.7 23 10-32 39-61 (262)
445 3b5x_A Lipid A export ATP-bind 96.6 0.0014 4.6E-08 51.4 3.3 23 11-33 370-392 (582)
446 1d2n_A N-ethylmaleimide-sensit 96.6 0.0024 8.2E-08 44.9 4.3 26 8-33 62-87 (272)
447 4fcw_A Chaperone protein CLPB; 96.6 0.0024 8.3E-08 45.6 4.3 24 10-33 47-70 (311)
448 1nlf_A Regulatory protein REPA 96.6 0.0014 4.9E-08 46.3 3.0 21 12-32 32-52 (279)
449 3ozx_A RNAse L inhibitor; ATP 96.5 0.0019 6.4E-08 50.1 3.8 25 9-33 24-48 (538)
450 1tue_A Replication protein E1; 96.5 0.0014 4.9E-08 44.2 2.8 23 10-32 58-80 (212)
451 3cf0_A Transitional endoplasmi 96.5 0.0019 6.6E-08 46.2 3.6 24 10-33 49-72 (301)
452 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0017 5.8E-08 50.3 3.5 23 12-34 314-336 (538)
453 3zvl_A Bifunctional polynucleo 96.5 0.0025 8.4E-08 47.8 4.2 23 10-32 258-280 (416)
454 3ake_A Cytidylate kinase; CMP 96.5 0.0021 7E-08 43.1 3.5 21 12-32 4-24 (208)
455 1l8q_A Chromosomal replication 96.5 0.0017 5.8E-08 46.9 3.2 23 10-32 37-59 (324)
456 3bk7_A ABC transporter ATP-bin 96.5 0.0016 5.3E-08 51.3 3.2 25 10-34 117-141 (607)
457 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0028 9.5E-08 46.4 4.1 24 9-32 23-46 (359)
458 3bk7_A ABC transporter ATP-bin 96.5 0.0019 6.4E-08 50.8 3.5 23 12-34 384-406 (607)
459 3ozx_A RNAse L inhibitor; ATP 96.4 0.0016 5.5E-08 50.5 3.0 23 12-34 296-318 (538)
460 2px0_A Flagellar biosynthesis 96.4 0.002 6.9E-08 46.1 3.0 85 59-153 183-273 (296)
461 1p5z_B DCK, deoxycytidine kina 96.4 0.0014 4.7E-08 45.9 2.1 24 9-32 23-46 (263)
462 2yl4_A ATP-binding cassette SU 96.4 0.0012 4.2E-08 51.8 2.0 22 12-33 372-393 (595)
463 1vma_A Cell division protein F 96.4 0.0024 8.2E-08 45.9 3.3 86 59-154 187-284 (306)
464 2qby_A CDC6 homolog 1, cell di 96.4 0.0021 7.2E-08 47.2 3.1 23 10-32 45-67 (386)
465 3qf4_B Uncharacterized ABC tra 96.4 0.0014 4.8E-08 51.5 2.1 23 11-33 382-404 (598)
466 3eie_A Vacuolar protein sortin 96.3 0.0035 1.2E-07 45.3 4.1 24 9-32 50-73 (322)
467 2dr3_A UPF0273 protein PH0284; 96.3 0.0023 7.8E-08 44.0 3.0 21 12-32 25-45 (247)
468 3j16_B RLI1P; ribosome recycli 96.3 0.0023 7.8E-08 50.3 3.3 22 13-34 381-402 (608)
469 2qmh_A HPR kinase/phosphorylas 96.3 0.0024 8.1E-08 42.9 2.9 24 10-33 34-57 (205)
470 1pzn_A RAD51, DNA repair and r 96.3 0.0022 7.6E-08 46.9 3.0 24 10-33 131-154 (349)
471 1fnn_A CDC6P, cell division co 96.3 0.0027 9.3E-08 46.7 3.5 22 12-33 46-67 (389)
472 1ofh_A ATP-dependent HSL prote 96.3 0.0026 8.9E-08 45.3 3.3 23 10-32 50-72 (310)
473 3qks_A DNA double-strand break 96.3 0.0028 9.4E-08 42.7 3.2 19 13-31 26-44 (203)
474 4b4t_M 26S protease regulatory 96.3 0.0031 1.1E-07 47.5 3.7 25 9-33 214-238 (434)
475 4a82_A Cystic fibrosis transme 96.3 0.0012 4.1E-08 51.7 1.6 22 11-32 368-389 (578)
476 2iw3_A Elongation factor 3A; a 96.3 0.0031 1.1E-07 52.1 3.8 24 12-35 463-486 (986)
477 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0033 1.1E-07 45.5 3.6 25 9-33 44-68 (322)
478 3qf4_A ABC transporter, ATP-bi 96.3 0.0016 5.5E-08 51.0 2.0 21 12-32 371-391 (587)
479 1sxj_C Activator 1 40 kDa subu 96.2 0.0028 9.7E-08 46.1 3.2 22 12-33 48-69 (340)
480 4b4t_K 26S protease regulatory 96.2 0.0036 1.2E-07 47.1 3.7 23 10-32 206-228 (428)
481 2ocp_A DGK, deoxyguanosine kin 96.2 0.0036 1.2E-07 43.2 3.6 23 11-33 3-25 (241)
482 1c9k_A COBU, adenosylcobinamid 96.2 0.0031 1.1E-07 41.7 3.0 21 13-33 2-22 (180)
483 2h92_A Cytidylate kinase; ross 96.2 0.0032 1.1E-07 42.7 3.2 22 11-32 4-25 (219)
484 4b4t_L 26S protease subunit RP 96.2 0.0038 1.3E-07 47.0 3.7 25 9-33 214-238 (437)
485 2qgz_A Helicase loader, putati 96.2 0.0036 1.2E-07 45.0 3.5 23 10-32 152-174 (308)
486 3cr8_A Sulfate adenylyltranfer 96.2 0.0019 6.6E-08 50.1 2.2 25 9-33 368-392 (552)
487 3ld9_A DTMP kinase, thymidylat 96.2 0.005 1.7E-07 42.1 3.8 26 7-32 18-43 (223)
488 4edh_A DTMP kinase, thymidylat 96.1 0.0048 1.7E-07 41.9 3.7 24 9-32 5-28 (213)
489 1sxj_D Activator 1 41 kDa subu 96.1 0.0036 1.2E-07 45.5 3.2 22 12-33 60-81 (353)
490 2r62_A Cell division protease 96.1 0.0015 5.1E-08 45.7 1.2 22 12-33 46-67 (268)
491 3tqf_A HPR(Ser) kinase; transf 96.1 0.0039 1.3E-07 40.9 3.0 23 11-33 17-39 (181)
492 2v1u_A Cell division control p 96.1 0.0031 1.1E-07 46.3 2.9 23 10-32 44-66 (387)
493 1a7j_A Phosphoribulokinase; tr 96.1 0.0017 5.9E-08 46.3 1.4 23 10-32 5-27 (290)
494 3hws_A ATP-dependent CLP prote 96.1 0.0051 1.8E-07 45.1 4.0 25 9-33 50-74 (363)
495 1um8_A ATP-dependent CLP prote 96.1 0.0043 1.5E-07 45.8 3.5 24 9-32 71-94 (376)
496 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0038 1.3E-07 47.9 3.2 22 12-33 66-87 (499)
497 3uk6_A RUVB-like 2; hexameric 96.1 0.004 1.4E-07 45.6 3.2 24 10-33 70-93 (368)
498 4b4t_J 26S protease regulatory 96.1 0.0043 1.5E-07 46.2 3.3 25 9-33 181-205 (405)
499 2z4s_A Chromosomal replication 96.1 0.0039 1.3E-07 47.1 3.2 23 10-32 130-152 (440)
500 3exa_A TRNA delta(2)-isopenten 96.1 0.0046 1.6E-07 44.5 3.4 22 12-33 5-26 (322)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.6e-43 Score=241.81 Aligned_cols=168 Identities=43% Similarity=0.724 Sum_probs=147.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
++.+.+||+|+|.+|||||||+++|..+.+...+.||.+.++.......++..+.+.+|||+|++.|..+++.+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|||++++++|+++..|+..+.....++.|++||+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999888778999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
.|++.+..
T Consensus 169 ~i~~~i~~ 176 (216)
T 4dkx_A 169 RVAAALPG 176 (216)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99998754
No 2
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.3e-38 Score=210.88 Aligned_cols=175 Identities=67% Similarity=1.048 Sum_probs=154.1
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 80 (178)
|.....+.+.+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 44455667789999999999999999999999998887888888888888888898899999999999999999999999
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
+.+|++++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999999999999998887779999999999999877778888889999999999999999999999
Q ss_pred HHHHHHHHhhccccc
Q 030364 161 NELFYEIGDCTECFS 175 (178)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (178)
+++|++|.+.+....
T Consensus 163 ~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 163 KEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887654
No 3
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.2e-37 Score=205.20 Aligned_cols=166 Identities=63% Similarity=0.986 Sum_probs=153.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
+.+.+||+++|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34689999999999999999999999998887888888888888888898899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988877788999999999999877777788888899999999999999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 998775
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.1e-37 Score=209.48 Aligned_cols=169 Identities=40% Similarity=0.734 Sum_probs=150.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
....+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34456899999999999999999999999988777888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
++++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999998877888888899999999999999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
++|.+.+.+
T Consensus 176 ~~l~~~i~~ 184 (191)
T 2a5j_A 176 INTAKEIYR 184 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=209.26 Aligned_cols=168 Identities=41% Similarity=0.683 Sum_probs=156.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999999888889999899888999999999999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887788999999999999888888888899999999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|.+.+.+.
T Consensus 173 l~~~i~~~ 180 (196)
T 3tkl_A 173 MAAEIKKR 180 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-37 Score=211.75 Aligned_cols=168 Identities=39% Similarity=0.688 Sum_probs=154.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
+.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 34567999999999999999999999999888888888888888888899989999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987778888888889998999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
+|.+.+..
T Consensus 182 ~l~~~i~~ 189 (201)
T 2ew1_A 182 DLACRLIS 189 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 7
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1e-36 Score=202.87 Aligned_cols=165 Identities=45% Similarity=0.753 Sum_probs=153.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999988888889888888888888998999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988877899999999999998877888888899999999999999999999999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98875
No 8
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5.9e-37 Score=205.62 Aligned_cols=167 Identities=41% Similarity=0.717 Sum_probs=153.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34568999999999999999999999999888788888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988777888888999999999999999999999999999
Q ss_pred HHHhhcc
Q 030364 166 EIGDCTE 172 (178)
Q Consensus 166 ~l~~~i~ 172 (178)
+|.+.+.
T Consensus 171 ~l~~~i~ 177 (179)
T 1z0f_A 171 EAAKKIY 177 (179)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998775
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=211.62 Aligned_cols=168 Identities=38% Similarity=0.623 Sum_probs=145.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35579999999999999999999999998877888888888788888888889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY 165 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (178)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..++ +++++||++|.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887667899999999999988777888889999999999 999999999999999999
Q ss_pred HHHhhcccc
Q 030364 166 EIGDCTECF 174 (178)
Q Consensus 166 ~l~~~i~~~ 174 (178)
+|.+.+.+.
T Consensus 186 ~l~~~i~~~ 194 (201)
T 2hup_A 186 RVATELIMR 194 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987643
No 10
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-37 Score=203.47 Aligned_cols=165 Identities=55% Similarity=0.876 Sum_probs=151.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|++|+|||||++++.++.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888889989999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc---cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
|+|++++.+++.+..|+..+.....++.|+++|+||+|+... +++..++...+++..+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988876778999999999999765 66777888889988999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
+|.+.+.+
T Consensus 162 ~l~~~i~~ 169 (170)
T 1ek0_A 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHHhh
Confidence 99988753
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.5e-37 Score=205.96 Aligned_cols=167 Identities=42% Similarity=0.726 Sum_probs=145.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+++|.+|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45689999999999999999999999998887888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|+|++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887765568999999999999887788888889999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
No 12
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.2e-37 Score=209.95 Aligned_cols=167 Identities=37% Similarity=0.694 Sum_probs=124.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45689999999999999999999999888777888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888889999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+..
T Consensus 165 l~~~i~~ 171 (183)
T 2fu5_C 165 LARDIKA 171 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 13
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.7e-37 Score=205.13 Aligned_cols=171 Identities=40% Similarity=0.676 Sum_probs=146.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
...++.+||+++|.+|+|||||+++|.++.+. ..+.++.+.++.......++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44567899999999999999999999998875 45678888888777778899899999999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988876678999999999999887778888888899989999999999999999999
Q ss_pred HHHHHhhccccc
Q 030364 164 FYEIGDCTECFS 175 (178)
Q Consensus 164 ~~~l~~~i~~~~ 175 (178)
|++|.+.+.+.+
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 14
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=7.7e-37 Score=205.04 Aligned_cols=168 Identities=42% Similarity=0.719 Sum_probs=152.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
+.+.+||+++|.+|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999887788888888899999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|.+.+...
T Consensus 171 l~~~~~~~ 178 (179)
T 2y8e_A 171 VAAALPGM 178 (179)
T ss_dssp HHHTCC--
T ss_pred HHHHHhhc
Confidence 99987643
No 15
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-37 Score=207.86 Aligned_cols=168 Identities=49% Similarity=0.745 Sum_probs=153.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 45689999999999999999999999998877889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877678999999999999877778888899999999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|.+.+...
T Consensus 180 l~~~i~~~ 187 (192)
T 2fg5_A 180 ISRQIPPL 187 (192)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99988654
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.4e-36 Score=205.84 Aligned_cols=167 Identities=36% Similarity=0.622 Sum_probs=153.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34579999999999999999999999998877888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888889999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+..
T Consensus 179 l~~~i~~ 185 (189)
T 2gf9_A 179 LVDVICE 185 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987743
No 17
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.6e-36 Score=208.18 Aligned_cols=168 Identities=38% Similarity=0.674 Sum_probs=154.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34668999999999999999999999999888888888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988777888888889999999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
+|.+.+..
T Consensus 164 ~l~~~i~~ 171 (206)
T 2bcg_Y 164 TMARQIKE 171 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987753
No 18
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.2e-36 Score=205.59 Aligned_cols=167 Identities=38% Similarity=0.650 Sum_probs=153.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35689999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999888876678999999999999877778888889999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+.+
T Consensus 167 l~~~~~~ 173 (186)
T 2bme_A 167 CARKILN 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987753
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=204.92 Aligned_cols=168 Identities=38% Similarity=0.645 Sum_probs=151.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999998888888899888888888999989999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
+++|||++++++++.+..|+..+... .++.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988776 46899999999999988888888889999999999999999999999999999
Q ss_pred HHHhhcccc
Q 030364 166 EIGDCTECF 174 (178)
Q Consensus 166 ~l~~~i~~~ 174 (178)
+|.+.+...
T Consensus 164 ~l~~~~~~~ 172 (181)
T 3tw8_B 164 CITELVLRA 172 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 20
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=206.51 Aligned_cols=169 Identities=38% Similarity=0.672 Sum_probs=153.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
.+.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||.+.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 33456899999999999999999999999988778888888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766789999999999998877778888899999999999999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
++|.+.+.+
T Consensus 180 ~~l~~~i~~ 188 (193)
T 2oil_A 180 ETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987754
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=9.8e-37 Score=205.18 Aligned_cols=168 Identities=32% Similarity=0.465 Sum_probs=151.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||+++|.++.+...+.++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999999998888888888777 67778899899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998886654 46899999999999988888889999999999999999999999999999999
Q ss_pred HHHhhccccc
Q 030364 166 EIGDCTECFS 175 (178)
Q Consensus 166 ~l~~~i~~~~ 175 (178)
+|.+.+...+
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 22
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=207.84 Aligned_cols=167 Identities=39% Similarity=0.674 Sum_probs=143.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35689999999999999999999999988877888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888888999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+..
T Consensus 182 l~~~i~~ 188 (200)
T 2o52_A 182 CARTILN 188 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.9e-38 Score=212.70 Aligned_cols=168 Identities=36% Similarity=0.609 Sum_probs=155.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 35689999999999999999999999998887888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877789999999999999888888888999999999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|.+.+...
T Consensus 180 l~~~i~~~ 187 (191)
T 3dz8_A 180 LVDAICDK 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987654
No 24
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-36 Score=206.66 Aligned_cols=166 Identities=35% Similarity=0.612 Sum_probs=152.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45689999999999999999999999998877888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888889999999999999999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+.+.
T Consensus 165 l~~~i~ 170 (203)
T 1zbd_A 165 LVDVIC 170 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.4e-36 Score=203.57 Aligned_cols=167 Identities=32% Similarity=0.497 Sum_probs=151.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345689999999999999999999999988888888887776 6777888989999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC-CCCCHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNEL 163 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~ 163 (178)
+++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...+++.++++++++||+ +|.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 99999999999999999999888663 35789999999999998888888899999999999999999999 99999999
Q ss_pred HHHHHhhccc
Q 030364 164 FYEIGDCTEC 173 (178)
Q Consensus 164 ~~~l~~~i~~ 173 (178)
|++|.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.3e-36 Score=203.10 Aligned_cols=169 Identities=28% Similarity=0.496 Sum_probs=150.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.+.+.++|+++|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456899999999999999999999999888878888877665 667788888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+++|||++++++++.+..|+..+.. ....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988744 445689999999999998877888888899999999999999999999999999
Q ss_pred HHHHhhccccc
Q 030364 165 YEIGDCTECFS 175 (178)
Q Consensus 165 ~~l~~~i~~~~ 175 (178)
++|.+.+...+
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999886543
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=208.02 Aligned_cols=168 Identities=36% Similarity=0.681 Sum_probs=145.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
...+..+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34456899999999999999999999998887778888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~ 163 (178)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..++...+++.. +++++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999998888876778999999999999887788888888888874 789999999999999999
Q ss_pred HHHHHhhcc
Q 030364 164 FYEIGDCTE 172 (178)
Q Consensus 164 ~~~l~~~i~ 172 (178)
|++|.+.+.
T Consensus 181 ~~~l~~~i~ 189 (192)
T 2il1_A 181 FLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.6e-37 Score=204.81 Aligned_cols=171 Identities=33% Similarity=0.485 Sum_probs=149.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..+.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999888776777877777777788876 67899999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC--CCce-EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN--PNLI-MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
+++|||++++++++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++...+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888876421 2444 789999999988777888888899999999999999999999999
Q ss_pred HHHHHHhhccccccC
Q 030364 163 LFYEIGDCTECFSLQ 177 (178)
Q Consensus 163 ~~~~l~~~i~~~~~~ 177 (178)
+|++|.+.+.+.+..
T Consensus 163 l~~~l~~~~~~~~~~ 177 (178)
T 2hxs_A 163 CFQKVAAEILGIKLN 177 (178)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999988776543
No 29
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=209.19 Aligned_cols=169 Identities=31% Similarity=0.528 Sum_probs=139.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
...++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 44456899999999999999999999999988778888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc------cccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++...+++..+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999998887766789999999999986 345667778888999999999999999999
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
|++++|++|.+.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2e-36 Score=201.14 Aligned_cols=164 Identities=34% Similarity=0.594 Sum_probs=150.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+..+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887764 688999999999998877777888889999999999999999999999999999
Q ss_pred Hhhcc
Q 030364 168 GDCTE 172 (178)
Q Consensus 168 ~~~i~ 172 (178)
.+.+.
T Consensus 162 ~~~~~ 166 (168)
T 1z2a_A 162 AEKHL 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 31
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2e-36 Score=201.49 Aligned_cols=165 Identities=39% Similarity=0.711 Sum_probs=144.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887788888888888888888888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|+|++++.+++.+..|+..+.....++.|+++|+||+|+ ..+.+..++...+++..+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998877678999999999999 4455667788889998999999999999999999999999
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 987643
No 32
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=209.09 Aligned_cols=167 Identities=43% Similarity=0.681 Sum_probs=145.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999998877888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888888999999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+.+
T Consensus 170 l~~~i~~ 176 (223)
T 3cpj_B 170 LINTIYQ 176 (223)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9988764
No 33
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=207.34 Aligned_cols=170 Identities=25% Similarity=0.273 Sum_probs=144.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-cchhhhcCCc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAA 84 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d 84 (178)
+....+||+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345689999999999999999999976544333445556666667778899999999999999987765 6778889999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877543 58999999999999877778888889999999999999999999999999
Q ss_pred HHHHHhhccccc
Q 030364 164 FYEIGDCTECFS 175 (178)
Q Consensus 164 ~~~l~~~i~~~~ 175 (178)
|++|++.+...+
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 34
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4.7e-36 Score=203.28 Aligned_cols=165 Identities=35% Similarity=0.619 Sum_probs=148.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-ccchhhhcCCcEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAA 86 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~~ 86 (178)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999999888888888888888888889988999999999999998 8889999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC---CCHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA---HNVNE 162 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~ 162 (178)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++.++++++++||++| .|+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999999888765 568999999999999887788888899999999999999999999 99999
Q ss_pred HHHHHHhhcc
Q 030364 163 LFYEIGDCTE 172 (178)
Q Consensus 163 ~~~~l~~~i~ 172 (178)
+|++|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3e-36 Score=200.58 Aligned_cols=165 Identities=25% Similarity=0.278 Sum_probs=134.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-cchhhhcCCcEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV 88 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d~~i~ 88 (178)
.+||+++|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 57999999999999999999998777666666667777778888899999999999999988876 77778899999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877643 589999999999998888888999999999999999999999999999999999
Q ss_pred Hhhcccc
Q 030364 168 GDCTECF 174 (178)
Q Consensus 168 ~~~i~~~ 174 (178)
.+.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987654
No 36
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=204.42 Aligned_cols=166 Identities=24% Similarity=0.406 Sum_probs=143.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345689999999999999999999999998887888887666 445677888999999999999888775 678999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC-CCCCCHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVN 161 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~ 161 (178)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999998887653 268999999999999887888888999999999999999999 8999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++|++|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 37
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=9.4e-36 Score=199.56 Aligned_cols=167 Identities=32% Similarity=0.576 Sum_probs=145.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.++|+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999999888788888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV 160 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 160 (178)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++...+++ ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 678999999999987 45667778888887 56789999999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
+++|++|.+.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 38
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.4e-36 Score=202.44 Aligned_cols=168 Identities=32% Similarity=0.555 Sum_probs=150.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE-EEEEEeCCe---------EEEEEEEeCCCchhhhcc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEV---------TIKFDIWDTAGQERYHSL 75 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~d~~g~~~~~~~ 75 (178)
+.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++. ......++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4566899999999999999999999999988778888887776 566666665 789999999999999999
Q ss_pred chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154 (178)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
+..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998887654 78999999999999887778888888999999999999999
Q ss_pred CCCCCHHHHHHHHHhhccc
Q 030364 155 KSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i~~ 173 (178)
++|.|++++|++|.+.+.+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 39
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-35 Score=200.46 Aligned_cols=164 Identities=18% Similarity=0.321 Sum_probs=142.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
..+.+.+||+++|.+|||||||+++++++.+...+.++.+ .....+.+++..+.+.+||++|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3445689999999999999999999999998877777633 334777889999999999999998776 778899
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQENG-LSFLETSAKSAHNV 160 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 160 (178)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++...+++.++ ++++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987653 688999999999994 566778888999999987 89999999999999
Q ss_pred HHHHHHHHhhccccc
Q 030364 161 NELFYEIGDCTECFS 175 (178)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (178)
+++|++|++.+.+.+
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876554
No 40
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=200.19 Aligned_cols=167 Identities=32% Similarity=0.388 Sum_probs=135.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--hhccchhhhcCCcE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPMYYRGAAA 85 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~d~ 85 (178)
.+.+||+++|++|+|||||+++|.++.+... .++.+.+.....+.+++..+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3579999999999999999999998876543 34566666677788899889999999999987 55666778899999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 4589999999999998877788888888888899999999999999999999
Q ss_pred HHHHhhccccc
Q 030364 165 YEIGDCTECFS 175 (178)
Q Consensus 165 ~~l~~~i~~~~ 175 (178)
++|.+.+...+
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886543
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.4e-35 Score=201.66 Aligned_cols=169 Identities=30% Similarity=0.491 Sum_probs=147.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
....+.+||+++|.+|+|||||++++.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 344568999999999999999999999999888788888776653 5678888999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc--cccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Q 030364 85 AAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK--RKVKNEEGELYAQENGLS-FLETSAKSAHNV 160 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 160 (178)
++++|||++++++++.+ ..|+..+... .++.|+++|+||+|+... +.+..++...+++.++++ ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 6777777655 568999999999999753 667788899999999988 999999999999
Q ss_pred HHHHHHHHhhccccc
Q 030364 161 NELFYEIGDCTECFS 175 (178)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (178)
+++|++|.+.+...+
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 176 NEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999886544
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=206.36 Aligned_cols=168 Identities=29% Similarity=0.446 Sum_probs=145.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34689999999999999999999999998887888877766 66666777788999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887653 35789999999999988888888999999999999999999999999999999
Q ss_pred HHHhhccccc
Q 030364 166 EIGDCTECFS 175 (178)
Q Consensus 166 ~l~~~i~~~~ 175 (178)
+|.+.+....
T Consensus 180 ~l~~~i~~~~ 189 (201)
T 3oes_A 180 KVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhh
Confidence 9999886553
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.4e-36 Score=206.46 Aligned_cols=167 Identities=25% Similarity=0.438 Sum_probs=145.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.....+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 334689999999999999999999999999888888888776 4556777888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEE
Q 030364 86 AVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE 151 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (178)
+|+|||++++++++. +..|+..+... .++.|+++|+||+|+... +.+..++...+++.+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999 68898888876 468999999999999763 56888899999999999 9999
Q ss_pred EeCCCCCC-HHHHHHHHHhhcccc
Q 030364 152 TSAKSAHN-VNELFYEIGDCTECF 174 (178)
Q Consensus 152 ~Sa~~~~~-i~~~~~~l~~~i~~~ 174 (178)
|||++|.| ++++|++|++.+...
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred eccCCCcccHHHHHHHHHHHHhcc
Confidence 99999998 999999999987644
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.3e-35 Score=196.91 Aligned_cols=163 Identities=33% Similarity=0.562 Sum_probs=144.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988877777777655 3556678888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.+ +++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887643 468999999999999887778888888888887 799999999999999999999
Q ss_pred HHhhcc
Q 030364 167 IGDCTE 172 (178)
Q Consensus 167 l~~~i~ 172 (178)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.9e-35 Score=196.21 Aligned_cols=164 Identities=32% Similarity=0.546 Sum_probs=143.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 478999999999999999999999988777777776555 3455778888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...+++.++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877543 589999999999998877788888899999999999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=9.1e-36 Score=197.69 Aligned_cols=163 Identities=28% Similarity=0.330 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||++++.+..... ..++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 6899999999999999999998665443 444555444 45667888899999999999999999999999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++++++.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887753 46899999999999988888888899999999999999999999999999999999
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
+.+...
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987654
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.8e-35 Score=199.71 Aligned_cols=169 Identities=31% Similarity=0.528 Sum_probs=148.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.+||+++|.+|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 344689999999999999999999999988777777776555 4456778888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999988877543 589999999999998877788888899999999999999999999999999
Q ss_pred HHHHhhccccc
Q 030364 165 YEIGDCTECFS 175 (178)
Q Consensus 165 ~~l~~~i~~~~ 175 (178)
++|.+.+...+
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886544
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-35 Score=202.75 Aligned_cols=165 Identities=38% Similarity=0.718 Sum_probs=148.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999988778888888888888888998899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...+++.++++++++||++|.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999988876678999999999999 445666778888888899999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
.+.+..
T Consensus 177 ~~~~~~ 182 (213)
T 3cph_A 177 AKLIQE 182 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.2e-35 Score=196.94 Aligned_cols=164 Identities=34% Similarity=0.544 Sum_probs=146.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+++|++|+|||||++++.++.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 368999999999999999999999988877777766444 5667788888999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++..+++++++||++|.|+++++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887653 3689999999999998877888888889999999999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=9.8e-36 Score=205.80 Aligned_cols=167 Identities=31% Similarity=0.559 Sum_probs=147.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe----------EEEEEEEeCCCchhhhccc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKFDIWDTAGQERYHSLA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~d~~g~~~~~~~~ 76 (178)
.+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++. .+.+.+||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 456899999999999999999999998887777777777777777777665 7899999999999999999
Q ss_pred hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++..+++++++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999988887765543 689999999999998877888888999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccc
Q 030364 156 SAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~i~~ 173 (178)
+|.|++++|++|.+.+..
T Consensus 182 ~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 51
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=200.82 Aligned_cols=166 Identities=31% Similarity=0.538 Sum_probs=148.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
+.+.++|+|+|.+|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34579999999999999999999999988777777777655 45567788889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (178)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++.++++++++||++|.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998888764 35899999999999988778888888999999999999999999999999999
Q ss_pred HHHhhccc
Q 030364 166 EIGDCTEC 173 (178)
Q Consensus 166 ~l~~~i~~ 173 (178)
+|.+.+..
T Consensus 170 ~l~~~i~~ 177 (206)
T 2bov_A 170 DLMREIRA 177 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-35 Score=199.20 Aligned_cols=165 Identities=37% Similarity=0.663 Sum_probs=149.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35799999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++...+++..+++++++||++|.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999988887654 3679999999999984 3556677888899999999999999999999999999
Q ss_pred HHhhccc
Q 030364 167 IGDCTEC 173 (178)
Q Consensus 167 l~~~i~~ 173 (178)
|.+.+..
T Consensus 172 l~~~~~~ 178 (195)
T 1x3s_A 172 LVEKIIQ 178 (195)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998754
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=7.8e-35 Score=199.19 Aligned_cols=164 Identities=48% Similarity=0.813 Sum_probs=145.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE----------------------------
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT---------------------------- 58 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (178)
.++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4568999999999999999999999999888888888888877777776655
Q ss_pred ---------EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 59 ---------IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 59 ---------~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 889999999999999999999999999999999999999999999998888764 389999999999 55
Q ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.+.+..++...+++..+++++++||++|.|++++|++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 56777788899999999999999999999999999999987753
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-35 Score=199.06 Aligned_cols=169 Identities=37% Similarity=0.625 Sum_probs=133.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
.+.+.++|+++|++|+|||||++++.++.+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34568999999999999999999999999888788888877777777776 56688999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAH 158 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (178)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...+++ ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876543 6889999999999954 34566777888887 567899999999999
Q ss_pred CHHHHHHHHHhhcccc
Q 030364 159 NVNELFYEIGDCTECF 174 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~~ 174 (178)
|++++|++|.+.+.+.
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887543
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-35 Score=199.55 Aligned_cols=163 Identities=26% Similarity=0.470 Sum_probs=143.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4689999999999999999999999988877777776655 445667888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (178)
+|||++++++++.+. .|+..+... .++.|+++|+||+|+... +.+..++...+++.+++ +++++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999987 788888776 358999999999999653 35677888889998887 999999
Q ss_pred CCCCCCHHHHHHHHHhhcc
Q 030364 154 AKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~ 172 (178)
|++|.|++++|++|.+.+.
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 56
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.9e-35 Score=200.75 Aligned_cols=167 Identities=37% Similarity=0.662 Sum_probs=146.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35568999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Q 030364 86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV 160 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 160 (178)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999888776532 578999999999997 44556677777777 67789999999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
+++|++|.+.+..
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.3e-35 Score=196.66 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=136.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||+||++. ..+++.+|++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 3568999999999999999999999998876 667766444 56677888889999999999865 4678889999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQ---GNPNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV 160 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (178)
++|||++++++++.+..|+..+... ..++.|+++|+||+|+. ..+.+..++...+++.. +++++++||++|.|+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999876665543 23689999999999994 45667778888888776 689999999999999
Q ss_pred HHHHHHHHhhcccc
Q 030364 161 NELFYEIGDCTECF 174 (178)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (178)
+++|++|.+.+.+.
T Consensus 157 ~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 157 DRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-35 Score=200.70 Aligned_cols=167 Identities=34% Similarity=0.488 Sum_probs=146.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
+.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45689999999999999999999999998877777777655 45567788889999999999887 67778889999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC-CHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELF 164 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~ 164 (178)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988887753 4689999999999998877888888899999999999999999999 999999
Q ss_pred HHHHhhccccc
Q 030364 165 YEIGDCTECFS 175 (178)
Q Consensus 165 ~~l~~~i~~~~ 175 (178)
++|.+.+.+.+
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999886543
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=200.05 Aligned_cols=168 Identities=30% Similarity=0.469 Sum_probs=137.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 445689999999999999999999999888777777776544 4556778888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEE
Q 030364 86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE 151 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (178)
+++|||++++++++.+. .|+..+.... ++.|+++|+||+|+... +.+..++...+++.+++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7888887763 58999999999998752 45677788888888887 9999
Q ss_pred EeCCCCCCHHHHHHHHHhhccccc
Q 030364 152 TSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
+||++|.|++++|++|.+.+.+.+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999876543
No 60
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-35 Score=194.87 Aligned_cols=166 Identities=33% Similarity=0.456 Sum_probs=144.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..+||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888766777666554 3445677888899999999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
|||++++++++.+..|+..+.... .++.|+++|+||+|+...+++...+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999988888877643 257899999999999887788888888888889999999999999999999999
Q ss_pred HHhhccccc
Q 030364 167 IGDCTECFS 175 (178)
Q Consensus 167 l~~~i~~~~ 175 (178)
|.+.+...+
T Consensus 161 l~~~~~~~~ 169 (172)
T 2erx_A 161 LLNLEKRRT 169 (172)
T ss_dssp HHHTCCSSC
T ss_pred HHHHHhhhh
Confidence 999887654
No 61
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=5.9e-35 Score=197.14 Aligned_cols=165 Identities=30% Similarity=0.524 Sum_probs=141.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
.+.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 345689999999999999999999999998877778877665 3456778888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEE
Q 030364 86 AVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLE 151 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 151 (178)
+++|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+. +.+..++...+++.++ +++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 6788888765 368999999999999742 4577788888998887 79999
Q ss_pred EeCC-CCCCHHHHHHHHHhhcc
Q 030364 152 TSAK-SAHNVNELFYEIGDCTE 172 (178)
Q Consensus 152 ~Sa~-~~~~i~~~~~~l~~~i~ 172 (178)
+||+ ++.|++++|++|.+.+.
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999998764
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-35 Score=200.44 Aligned_cols=166 Identities=28% Similarity=0.342 Sum_probs=138.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGA 83 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~ 83 (178)
..+.+||+++|.+|||||||+++|.+... .. ..++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-DCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-C---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-cCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 35679999999999999999999986432 33 234455566667778899999999999999876 455667778899
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
|++++|||++++++|+.+..|+..+... ..++.|+++|+||+|+.+.+.+..++...++..+++++++|||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998887653 235799999999999987777887888888888999999999999999999
Q ss_pred HHHHHHhhccc
Q 030364 163 LFYEIGDCTEC 173 (178)
Q Consensus 163 ~~~~l~~~i~~ 173 (178)
+|++|++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 63
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.8e-34 Score=195.12 Aligned_cols=165 Identities=30% Similarity=0.523 Sum_probs=142.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
++.+||+++|.+|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4589999999999999999999999988777777664 444566678888999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. .....+....+++.++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887753 46899999999999874 556677888899999999999999999999999999
Q ss_pred HHhhcccc
Q 030364 167 IGDCTECF 174 (178)
Q Consensus 167 l~~~i~~~ 174 (178)
|.+.+...
T Consensus 160 l~~~~~~~ 167 (189)
T 4dsu_A 160 LVREIRKH 167 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987643
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.5e-35 Score=205.01 Aligned_cols=171 Identities=29% Similarity=0.489 Sum_probs=145.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
......+||+++|.+|+|||||+++|+++.+...+.++.+.+......... +..+.+.+||+||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 445568999999999999999999999888877777787776666665554 4458899999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+....++...+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999988876677999999999999887788888888898889999999999999999999
Q ss_pred HHHHHhhccccc
Q 030364 164 FYEIGDCTECFS 175 (178)
Q Consensus 164 ~~~l~~~i~~~~ 175 (178)
|++|.+.+....
T Consensus 166 ~~~l~~~~~~~~ 177 (218)
T 4djt_A 166 FLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHhccc
Confidence 999999887543
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.4e-34 Score=194.02 Aligned_cols=165 Identities=28% Similarity=0.504 Sum_probs=143.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999988877777776554 455677888999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (178)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..++...+++..++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 6878777663 48999999999998653 45667788888988887 999999
Q ss_pred CCCCCCHHHHHHHHHhhcccc
Q 030364 154 AKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~ 174 (178)
|++|.|++++|++|.+.+...
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988654
No 66
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.6e-35 Score=199.42 Aligned_cols=167 Identities=26% Similarity=0.475 Sum_probs=138.8
Q ss_pred ccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC
Q 030364 3 RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82 (178)
Q Consensus 3 ~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 82 (178)
+.....+.+||+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence 34445678999999999999999999999998887777777543 45566778888999999999999999999999999
Q ss_pred CcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc------------cCHHHHHHHHHHcCC-e
Q 030364 83 AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK------------VKNEEGELYAQENGL-S 148 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~ 148 (178)
+|++++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+..... +..++...+++..++ +
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 99999999999999999987 7877777764 7899999999999876433 667788888888886 6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q 030364 149 FLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
++++||++|.|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998865
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.1e-35 Score=204.07 Aligned_cols=166 Identities=27% Similarity=0.478 Sum_probs=110.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEeCCe--EEEEEEEeCCCchhhhccchhhhcCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
...++|+++|.+|+|||||+++|.++ .+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35789999999999999999999988 777777788777777777888876 88999999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCC-CC
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEE-KRKVKNEEGELYAQENGLSFLETSAKS-AH 158 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 158 (178)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...+++.++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6899999999999987 677888889999999999999999999 99
Q ss_pred CHHHHHHHHHhhccc
Q 030364 159 NVNELFYEIGDCTEC 173 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~ 173 (178)
|++++|++|.+.+..
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987653
No 68
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.8e-35 Score=201.24 Aligned_cols=167 Identities=29% Similarity=0.515 Sum_probs=143.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 345689999999999999999999999998877778877555 4456678888999999999999999999999999999
Q ss_pred EEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc--------cCHHHHHHHHHHcCC-eEEEEeCC
Q 030364 86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK--------VKNEEGELYAQENGL-SFLETSAK 155 (178)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
+++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+... +..++...+++.+++ +++++||+
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence 99999999999999986 7888887763 5899999999999876543 367778888888886 99999999
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 030364 156 SAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 156 ~~~~i~~~~~~l~~~i~~~ 174 (178)
+|.|++++|++|++.+...
T Consensus 163 ~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TCTTHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhhh
Confidence 9999999999999987654
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=200.56 Aligned_cols=167 Identities=31% Similarity=0.532 Sum_probs=124.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999888776777665444 455677888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEEe
Q 030364 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETS 153 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 153 (178)
+|||++++++++.+. .|+..+... .++.|+++|+||+|+.... .+..++...+++..++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 688877765 3689999999999997543 5667788889988897 999999
Q ss_pred CCCCCCHHHHHHHHHhhcccccc
Q 030364 154 AKSAHNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~~~ 176 (178)
|++|.|++++|++|.+.+...+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999998876543
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=211.74 Aligned_cols=167 Identities=41% Similarity=0.691 Sum_probs=143.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 56899999999999999999999998888778888888888888899999999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777777777888899999999999999999999999999
Q ss_pred Hhhcccc
Q 030364 168 GDCTECF 174 (178)
Q Consensus 168 ~~~i~~~ 174 (178)
.+.+.+.
T Consensus 191 ~~~l~~~ 197 (199)
T 3l0i_B 191 AAEIKKR 197 (199)
T ss_dssp TTTTTTT
T ss_pred HHHHHHh
Confidence 9987653
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3.9e-34 Score=195.69 Aligned_cols=164 Identities=34% Similarity=0.545 Sum_probs=142.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+||+++|.+|+|||||++++.++.+...+.++.+.++.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 468899999999999999999999999887777877766543 3677888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364 88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (178)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (178)
+|||++++++++.+ ..|+..+... .++.|+++|+||+|+... +.+..++...+++..++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 5777777665 358999999999998754 34667788888888887 999999
Q ss_pred CCCCCCHHHHHHHHHhhccc
Q 030364 154 AKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~ 173 (178)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987643
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-34 Score=198.06 Aligned_cols=164 Identities=29% Similarity=0.519 Sum_probs=141.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34689999999999999999999999998877778877665 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEE
Q 030364 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET 152 (178)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (178)
++|||++++++++.+ ..|+..+... .++.|+++|+||+|+... +.+..++...+++.++ +++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 6888888765 368999999999999642 4567788888998887 799999
Q ss_pred eCC-CCCCHHHHHHHHHhhcc
Q 030364 153 SAK-SAHNVNELFYEIGDCTE 172 (178)
Q Consensus 153 Sa~-~~~~i~~~~~~l~~~i~ 172 (178)
||+ +|.|++++|++|++.+.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHh
Confidence 999 68999999999988753
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=6e-34 Score=192.98 Aligned_cols=167 Identities=29% Similarity=0.516 Sum_probs=134.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|.+|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4578999999999999999999999888776666665444 456677888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +....++...+++..+++++++||++|.|+++++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999988887654 35799999999999876 556678888899999999999999999999999999
Q ss_pred HHhhcccccc
Q 030364 167 IGDCTECFSL 176 (178)
Q Consensus 167 l~~~i~~~~~ 176 (178)
|.+.+.+.+.
T Consensus 177 l~~~~~~~~~ 186 (190)
T 3con_A 177 LVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-34 Score=195.99 Aligned_cols=169 Identities=32% Similarity=0.430 Sum_probs=143.9
Q ss_pred cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
++.....++|+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 34455689999999999999999999999988777777766544 34556788889999999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
|++++|||++++++++.+..|+..+.... .++.|+++|+||+|+.. +.+..++...++..++++++++||++|.|++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 99999999999999999888887776643 25789999999999875 5566777888888899999999999999999
Q ss_pred HHHHHHHhhcccc
Q 030364 162 ELFYEIGDCTECF 174 (178)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (178)
++|++|.+.+...
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-34 Score=195.15 Aligned_cols=166 Identities=32% Similarity=0.529 Sum_probs=138.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
...+||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999998887777777766543 3677888899999999999999999999999999999
Q ss_pred EEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364 88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (178)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (178)
+|||++++++++.+ ..|+..+... .++.|+++|+||+|+... +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 6777777665 368999999999999754 34667778888888887 999999
Q ss_pred CCCCCCHHHHHHHHHhhccccc
Q 030364 154 AKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~~ 175 (178)
|++|.|++++|++|.+.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999876543
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=4.3e-35 Score=197.15 Aligned_cols=165 Identities=30% Similarity=0.521 Sum_probs=126.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 355899999999999999999999999887766666654432 2244566678889999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Q 030364 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK----------VKNEEGELYAQENGL-SFLETSA 154 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 154 (178)
++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+... +..++...+++.+++ +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999987 6888887763 5899999999999866544 366778888888886 9999999
Q ss_pred CCCCCHHHHHHHHHhhccc
Q 030364 155 KSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i~~ 173 (178)
++|.|++++|++|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.5e-33 Score=186.55 Aligned_cols=161 Identities=30% Similarity=0.541 Sum_probs=141.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (178)
.+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 68999999999999999999999988776666665443 55567788889999999999999888889999999999999
Q ss_pred EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...+++.++++++++||++|.|+++++++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887754 35799999999999876 45667788888988999999999999999999999999
Q ss_pred hhcc
Q 030364 169 DCTE 172 (178)
Q Consensus 169 ~~i~ 172 (178)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.2e-33 Score=190.68 Aligned_cols=165 Identities=28% Similarity=0.350 Sum_probs=135.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc--CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAA 84 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~d 84 (178)
.+.+||+++|.+|||||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 3332 33455566667778899999999999999866 4556777889999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (178)
++++|||++++++|+.+..|+..+.... .++.|+++|+||+|+...+.+..++...++..+++++++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988777643 457999999999999877777777888888889999999999999999999
Q ss_pred HHHHHhhccc
Q 030364 164 FYEIGDCTEC 173 (178)
Q Consensus 164 ~~~l~~~i~~ 173 (178)
|++|++.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988743
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=9.8e-35 Score=201.36 Aligned_cols=166 Identities=33% Similarity=0.557 Sum_probs=146.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
..+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34456899999999999999999998878877778888888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.... .+...+++..+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988763 58899999999999764432 24556777889999999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
++|.+.+..
T Consensus 167 ~~l~~~l~~ 175 (221)
T 3gj0_A 167 LWLARKLIG 175 (221)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998754
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.7e-34 Score=196.50 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=134.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-----------cCceeeeEEEEEE-EeCCeEEEEEEEeCCCchhh
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------ESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~ 72 (178)
....+.+||+++|.+|+|||||++.+.+ .+...+ .++.+.++..... ..++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3456789999999999999999976664 444333 2344444433334 56677899999999999999
Q ss_pred hccchhhhcCCcEEEEEEECC------CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC
Q 030364 73 HSLAPMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG 146 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 146 (178)
...+..+++.+|++|+|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+. +..++...+++.++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence 999999999999999999999 5567777777777763 33578999999999999763 66788888999899
Q ss_pred C-eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 147 L-SFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 147 ~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+ +++++||++|.|++++|++|.+.+...
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999987654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.6e-34 Score=194.72 Aligned_cols=167 Identities=16% Similarity=0.249 Sum_probs=128.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 83 (178)
+...+..||+|+|.+|+|||||+++|.++.+.. .+.++.+.... .+. ...+.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 344568999999999999999999999998877 67777774433 233 3347888999999999999999999999
Q ss_pred cEEEEEEECCCHhHHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCccccccCH---HHHH-HHHHHcCCeEEE
Q 030364 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--------PNLIMFLVANKVDLEEKRKVKN---EEGE-LYAQENGLSFLE 151 (178)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~ivv~nK~D~~~~~~~~~---~~~~-~~~~~~~~~~~~ 151 (178)
|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+........ .... .+++..++++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 999999999999999999888888765311 3789999999999976532111 1111 112446789999
Q ss_pred EeCCCCCCHHHHHHHHHhhccccc
Q 030364 152 TSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
+||++|.|++++|++|.+.+....
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999876543
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=8.5e-32 Score=183.80 Aligned_cols=166 Identities=42% Similarity=0.697 Sum_probs=147.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
+..++|+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999887777888887887888889999999999999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (178)
+|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+...++..++...++.++++||+++.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998888888776655678999999999998777777788888999999999999999999999999999
Q ss_pred Hhhccc
Q 030364 168 GDCTEC 173 (178)
Q Consensus 168 ~~~i~~ 173 (178)
.+.+..
T Consensus 163 ~~~~~~ 168 (199)
T 2f9l_A 163 LTEIYR 168 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=8.5e-34 Score=192.08 Aligned_cols=162 Identities=22% Similarity=0.314 Sum_probs=129.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++.. +... .+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 458999999999999999999999998887777777766543 3333 467889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.... ...+.... ....+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999988888876542 3689999999999996532 12221111 11234689999999999999
Q ss_pred HHHHHHHhhccccc
Q 030364 162 ELFYEIGDCTECFS 175 (178)
Q Consensus 162 ~~~~~l~~~i~~~~ 175 (178)
++|++|.+.+...+
T Consensus 174 ~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 174 ITLQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=5.5e-33 Score=189.61 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=122.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|++|||||||++++.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999987764 355555544 34455666 78889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-----------------cCCeE
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSF 149 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (178)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+ .+..++...+... .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999998888764 246899999999999975 4555666665542 34689
Q ss_pred EEEeCCCCCCHHHHHHHHHhhc
Q 030364 150 LETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
++|||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999999876
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=185.86 Aligned_cols=162 Identities=21% Similarity=0.291 Sum_probs=129.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc-CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+.+||+++|.+|+|||||+++|.++. +...+.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 458999999999999999999999887 4555666665 3344455554 6788999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCC
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH 158 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
++|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. ...++...... ..+++++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999999888876533 58999999999999653 23344444442 235799999999999
Q ss_pred CHHHHHHHHHhhccccc
Q 030364 159 NVNELFYEIGDCTECFS 175 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~~~ 175 (178)
|++++|++|.+.+.+.+
T Consensus 173 gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 173 GLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp THHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987654
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.3e-32 Score=185.38 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=127.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|++|+|||||++++.++.+.. +.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 457899999999999999999999988653 55555543 44556666 78889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEEeC
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSA 154 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 154 (178)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+ .+..++....... .++++++|||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999998887654 236899999999999976 3445555544332 3568999999
Q ss_pred CCCCCHHHHHHHHHhhc
Q 030364 155 KSAHNVNELFYEIGDCT 171 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i 171 (178)
++|.|++++|++|.+.+
T Consensus 174 ~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=4.1e-33 Score=185.66 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=126.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|.+|+|||||++++.++.+.. +.++.+.. ...+.++ .+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 357999999999999999999999888754 55555533 3444555 367889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHH-H----HHHHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE-L----YAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+.. . .+...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999888887776542 368999999999999764321 1111 1 122346689999999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++|++|.+.+..
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1e-33 Score=187.47 Aligned_cols=157 Identities=18% Similarity=0.320 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (178)
+||+++|++|+|||||++++.++.+.. +.|+.+.. ...+..+ .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 45555532 2333333 467889999999999999999999999999999
Q ss_pred ECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Q 030364 91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~~ 164 (178)
|++++++++.+..|+..+... ..++.|+++|+||+|+.+... ..+... + ++..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888887653 346899999999999965422 122111 1 11234689999999999999999
Q ss_pred HHHHhhcccc
Q 030364 165 YEIGDCTECF 174 (178)
Q Consensus 165 ~~l~~~i~~~ 174 (178)
++|.+.+.+.
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=100.00 E-value=1.8e-31 Score=181.18 Aligned_cols=165 Identities=41% Similarity=0.705 Sum_probs=149.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
.+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34578999999999999999999999998888888888888888889999999999999999999988999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++|+|.++..+++.+..|+..+......+.|+++++||+|+.+...+...++..++...++.++++||+++.|++++|++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999888888777665567899999999999877777778889999999999999999999999999999
Q ss_pred HHhhc
Q 030364 167 IGDCT 171 (178)
Q Consensus 167 l~~~i 171 (178)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=7.3e-32 Score=182.11 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=128.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|.+|+|||||++++.++. ...+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 568999999999999999999999888 55567776644 33444444 67889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888887654 246899999999999976432 22222221 1345689999999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=9.1e-33 Score=187.65 Aligned_cols=160 Identities=18% Similarity=0.304 Sum_probs=120.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|++|+|||||++++.++.+.. +.|+.+ .....+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4568999999999999999999999887653 344444 3333444444 7788999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i 160 (178)
++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+... ..+... + +...+++++++||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 9999999999999998888887653 246899999999999965422 122111 1 1123468999999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1e-32 Score=185.77 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=124.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56899999999999999999999987543 345555533 33445553 67889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.... ++..... ...++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776543 2468899999999999764322 2222111 1235689999999999999
Q ss_pred HHHHHHHhhcccc
Q 030364 162 ELFYEIGDCTECF 174 (178)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (178)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=2.7e-32 Score=183.59 Aligned_cols=158 Identities=19% Similarity=0.286 Sum_probs=124.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||+++|.++.+ ..+.++.+... ..+.+++ +.+.+||+||++.+...+..+++.+|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34689999999999999999999998887 44556655443 3344454 7788999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Q 030364 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNV 160 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i 160 (178)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999988888876542 468999999999999653 2223332222 224568999999999999
Q ss_pred HHHHHHHHhhc
Q 030364 161 NELFYEIGDCT 171 (178)
Q Consensus 161 ~~~~~~l~~~i 171 (178)
+++|++|.+.+
T Consensus 171 ~~l~~~l~~~l 181 (181)
T 2h17_A 171 CQGLEWMMSRL 181 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.4e-32 Score=182.64 Aligned_cols=160 Identities=19% Similarity=0.278 Sum_probs=125.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.++|+++|.+|+|||||++++.++.+. .+.++.+... ..+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45899999999999999999999988776 4556555332 3344454 77889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988887643 3689999999999997532 233333332 2345699999999999999
Q ss_pred HHHHHHHhhcccc
Q 030364 162 ELFYEIGDCTECF 174 (178)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (178)
++|++|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=100.00 E-value=8.6e-33 Score=186.56 Aligned_cols=166 Identities=20% Similarity=0.413 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEe---CCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (178)
.+||+++|++|||||||++++.+. .+...+.++.+.++....+.. ++..+.+.+||++|++.+...++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 444556677776665554433 335678999999999999999999999999
Q ss_pred EEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC---HHHHHHHHHHcCCe----EEEEeCCC
Q 030364 85 AAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLS----FLETSAKS 156 (178)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 156 (178)
++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+...+. ......+++.++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 5799999999888765 3578999999999987654432 23345566666776 99999999
Q ss_pred CC-CHHHHHHHHHhhcccccc
Q 030364 157 AH-NVNELFYEIGDCTECFSL 176 (178)
Q Consensus 157 ~~-~i~~~~~~l~~~i~~~~~ 176 (178)
|. +++++++.|.+.+...+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHHHHhcccc
Confidence 97 999999999988876553
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=4.3e-31 Score=193.02 Aligned_cols=163 Identities=27% Similarity=0.494 Sum_probs=142.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
..++|+++|.+|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999999988877777776554 4556778889999999999999999999999999999999
Q ss_pred EEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeC
Q 030364 89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSA 154 (178)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 154 (178)
|||++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..++...+++..++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 6777777653 48999999999998653 45677888899999997 9999999
Q ss_pred CCCCCHHHHHHHHHhhccc
Q 030364 155 KSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 155 ~~~~~i~~~~~~l~~~i~~ 173 (178)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987643
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=199.89 Aligned_cols=163 Identities=28% Similarity=0.505 Sum_probs=136.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (178)
..+.+||+++|.+|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35689999999999999999999998888776666665444 34456677778899999999999999999999999999
Q ss_pred EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEE
Q 030364 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLET 152 (178)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (178)
++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.... .+..++...+++..++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999986 6777776543 488999999999996543 4455666777777887 99999
Q ss_pred eCCCCCCHHHHHHHHHhhc
Q 030364 153 SAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i 171 (178)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998764
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.98 E-value=7.4e-33 Score=187.49 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=127.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
++.+||+++|.+|+|||||++++.++.+.. +.++.+.. ...+..++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999998877654 45555433 33344443 67889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+... .+...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888887776543 468999999999999664321 22111 112345689999999999999
Q ss_pred HHHHHHHhhcccccc
Q 030364 162 ELFYEIGDCTECFSL 176 (178)
Q Consensus 162 ~~~~~l~~~i~~~~~ 176 (178)
+++++|.+.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~~~ 187 (189)
T 2x77_A 173 EGMDWLVERLREQGL 187 (189)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998876543
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.98 E-value=4e-32 Score=185.02 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=122.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccc---hhhh
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLA---PMYY 80 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~---~~~~ 80 (178)
..+++.+||+++|.+|||||||++++.+. +..................+ ++..+.+.+||++|++.|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34456899999999999999999987764 33322222222222222223 2556789999999999987776 8999
Q ss_pred cCCcEEEEEEECCCH--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------ccccCHHHHHHHHH----HcCC
Q 030364 81 RGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEEGELYAQ----ENGL 147 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~ 147 (178)
+.+|++|+|||++++ +++..+..|+..+... .++.|+++|+||+|+.. .+.+.......+++ ..++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999997 6777777777776543 46899999999999754 34455556677777 6788
Q ss_pred eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 148 SFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 148 ~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
++++|||++ .|++++|+.|++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999875
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-32 Score=184.58 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=123.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
++.++|+++|++|+|||||++++.++.+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 3455665533 33344444 67889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (178)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888876643 4689999999999986532 2233322221 134589999999999999
Q ss_pred HHHHHHHhhccc
Q 030364 162 ELFYEIGDCTEC 173 (178)
Q Consensus 162 ~~~~~l~~~i~~ 173 (178)
+++++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=2e-30 Score=178.77 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=114.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-EEEEEEEeCCCchhhhc-cchhhhcCCc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHS-LAPMYYRGAA 84 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~d 84 (178)
+.+.+||+++|.+|+|||||+++|+++.+...+.++. .+... +.+++. .+.+.+||+||++.+.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4568999999999999999999999998876655433 33322 555543 57889999999999987 7888899999
Q ss_pred EEEEEEECCCHh-HHHHHHHHHHH-HHH--hCCCCceEEEEEeCCCCccccccCHH--HHH-------------------
Q 030364 85 AAVVVYDITSMD-SFERAKKWVQE-LQR--QGNPNLIMFLVANKVDLEEKRKVKNE--EGE------------------- 139 (178)
Q Consensus 85 ~~i~v~d~~~~~-s~~~~~~~~~~-~~~--~~~~~~~~ivv~nK~D~~~~~~~~~~--~~~------------------- 139 (178)
++++|||+++.. ++.....++.. +.. ....+.|+++|+||+|+......... ...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 45555544444 333 22457999999999999754332110 000
Q ss_pred -------------HHHH-Hc--CCeEEEEeCCCC------CCHHHHHHHHHhhc
Q 030364 140 -------------LYAQ-EN--GLSFLETSAKSA------HNVNELFYEIGDCT 171 (178)
Q Consensus 140 -------------~~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~i 171 (178)
.|+. .+ +++|++|||++| .|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0111 11 678999999999 99999999998753
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.9e-32 Score=191.10 Aligned_cols=166 Identities=23% Similarity=0.276 Sum_probs=122.5
Q ss_pred CCCCceeEEEEEcCC---------CCCHHHHHHHHHh---CcCCCCccCce-eeeEEEEE--------------EEeCCe
Q 030364 5 SNKNIQVKLVLLGDM---------GTGKTSLVLRFVK---GQFFDFQESTI-GAAFFTQV--------------LSLNEV 57 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~---------~~GKStl~~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 57 (178)
....+.+||+++|.+ |||||||+++|.+ +.+...+.++. +.++.... ...++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 344568999999999 9999999999998 45555555554 22211111 124567
Q ss_pred EEEEEEEe-----------------------CCCchhhhccchhhhc---------------------CCcEEEEEEECC
Q 030364 58 TIKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDIT 93 (178)
Q Consensus 58 ~~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 93 (178)
.+.+.+|| ++|++.|...+..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 5566666666666666 799999999999
Q ss_pred CH--hHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364 94 SM--DSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 94 ~~--~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
++ ++++.+..|+..+... ...+.|+++|+||+|+...+.+ ++...++.. .+++++++||++|.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999888765 3467999999999999765544 466667765 4789999999999999999999998
Q ss_pred hcc
Q 030364 170 CTE 172 (178)
Q Consensus 170 ~i~ 172 (178)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.97 E-value=2.3e-30 Score=171.76 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhhc--
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYYR-- 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~-- 81 (178)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+||+||+..+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998766544444444444444455555 5788999999877642 3345554
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +...+++.++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998653 3446666554 3689999999999876555443 3567788889999999999999999
Q ss_pred HHHHHHHhhcc
Q 030364 162 ELFYEIGDCTE 172 (178)
Q Consensus 162 ~~~~~l~~~i~ 172 (178)
++|++|.+.+.
T Consensus 154 ~l~~~l~~~~~ 164 (165)
T 2wji_A 154 ELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=1.1e-29 Score=183.77 Aligned_cols=160 Identities=20% Similarity=0.309 Sum_probs=126.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-----hccchhhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-----HSLAPMYY 80 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~ 80 (178)
..+||+++|.+|+|||||+++++++... ..+.+|.+.... ...+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4789999999999999999999887322 124444444433 334444 578999999999988 67888899
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--ccc----cCHHHHHHHHHHcC---CeE
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--KRK----VKNEEGELYAQENG---LSF 149 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 149 (178)
+.+|++|+|||++++++++.+..|...+.... .++.|+++|+||+|+.. .+. +..++...+++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755544321 56899999999999876 343 45567788888887 799
Q ss_pred EEEeCCCCCCHHHHHHHHHhhcc
Q 030364 150 LETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+++||++ .|+.++|..+++.+-
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999999887653
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=1e-29 Score=170.31 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=121.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 85 (178)
..++.++|+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++. .+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 3456899999999999999999999998887666666555555555666664 46699999999999999999999999
Q ss_pred EEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH-------cC--CeEEEEe
Q 030364 86 AVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NG--LSFLETS 153 (178)
Q Consensus 86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~S 153 (178)
+++|+|+++ .++++.+ ..+ ...+.|+++|+||+|+.... .++....... ++ ++++++|
T Consensus 82 ~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 999999998 3444332 222 23478999999999986531 1222222222 12 5899999
Q ss_pred CCCCCCHHHHHHHHHhhccccccC
Q 030364 154 AKSAHNVNELFYEIGDCTECFSLQ 177 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~~~~ 177 (178)
|++|.|++++|++|.+.+...+.+
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhccc
Confidence 999999999999999988876654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=5.1e-30 Score=196.64 Aligned_cols=161 Identities=22% Similarity=0.357 Sum_probs=126.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
.+.+||+++|.+|+|||||+++|.++.+.. +.+|.+..+. .+..+ .+.+.+|||+|++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988654 4555554432 33343 367889999999999999999999999999
Q ss_pred EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (178)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999998888876543 36899999999999865322 22222111 1234579999999999999
Q ss_pred HHHHHHHhhccccc
Q 030364 162 ELFYEIGDCTECFS 175 (178)
Q Consensus 162 ~~~~~l~~~i~~~~ 175 (178)
++|++|.+.++...
T Consensus 473 ~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 473 EGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988654
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=3.1e-29 Score=174.50 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=115.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch------h----hhccch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE------R----YHSLAP 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~------~----~~~~~~ 77 (178)
...++|+|+|.+|+|||||+++|+++.+.....+..+.+........++ +.+.+||+||.. . +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 4579999999999999999999998876432222223333333333444 578899999983 2 222 23
Q ss_pred hhhcCCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH---HHHHHHHHcC--CeEE
Q 030364 78 MYYRGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENG--LSFL 150 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 150 (178)
.++..+|++++|||++++.+++. ...|+..+... .++.|+++|+||+|+...+.+... ....++...+ ++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 45788899999999999877642 23444555433 357899999999999876666554 4556666676 8999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
++||++|.|++++|++|.+.+...
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=189.64 Aligned_cols=159 Identities=18% Similarity=0.306 Sum_probs=118.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+.+||+|+|.+|+|||||+++|.++.+... .++.+.. ...+... .+.+.+||+||++.+...+..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998876542 2333333 2333344 3678899999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 162 (178)
|||++++++++.+..++..+... ..++.|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999988887776553 346899999999999976432 22221111 12345899999999999999
Q ss_pred HHHHHHhhcccc
Q 030364 163 LFYEIGDCTECF 174 (178)
Q Consensus 163 ~~~~l~~~i~~~ 174 (178)
+|++|.+.+...
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=1.7e-29 Score=171.55 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=110.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 76 (178)
....++|+++|.+|+|||||+++|.++.+...+.++.+.+........++ .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34589999999999999999999998876665666666555444444444 478999999 67777777
Q ss_pred hhhhcCC---cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHH-HHHHcCCeEE
Q 030364 77 PMYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL-YAQENGLSFL 150 (178)
Q Consensus 77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 150 (178)
..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+....++.. ++... +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777777 9999999999877666532 2222322 4789999999999976554332 12222 3223467999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++||++|.|++++|++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998765
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=5.1e-29 Score=168.32 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=122.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhhc-
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR- 81 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 81 (178)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ +.+.+||+||+..+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 578999999999999999999998765544455555555556666665 678899999987764 23455554
Q ss_pred -CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .....+++.++++++++||++|.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999886 4455566666654 478999999999987655544 3567778888999999999999999
Q ss_pred HHHHHHHHhhccccc
Q 030364 161 NELFYEIGDCTECFS 175 (178)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (178)
+++|++|.+.+....
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876543
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=4.2e-30 Score=184.94 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---cchhhhcCCcE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAA 85 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~d~ 85 (178)
||+++|..|+|||||++++.++.... ...+|.+.+... ++ ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666655432 22 347899999999999964 36889999999
Q ss_pred EEEEEECCCH--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------cccCHHHHHHHHHH----cCCeEEEE
Q 030364 86 AVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE----NGLSFLET 152 (178)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 152 (178)
+|+|||++++ ++...+..|+..+... .++.|+++++||+|+... +++..+++.++++. ++++|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333333334444433 568999999999999653 34666677778875 67899999
Q ss_pred eCCCCCCHHHHHHHHHhhcc
Q 030364 153 SAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~i~ 172 (178)
||++ .+|.++|..|++.+-
T Consensus 155 SAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSS
T ss_pred ccCC-CcHHHHHHHHHHHHH
Confidence 9998 699999999998764
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=3.2e-29 Score=169.47 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhccchhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMY 79 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~ 79 (178)
+||+++|.+|+|||||++++.++.+...+.++.+.... ..... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998876655554443322 22233 577999999 66777777777
Q ss_pred hcC-CcEEEEEEECCCHhHHHHH-HHHHHH--------H-HHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364 80 YRG-AAAAVVVYDITSMDSFERA-KKWVQE--------L-QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (178)
Q Consensus 80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
++. ++++++|+++.+..+++.+ ..|... + ......+.|+++|+||+|+.... .+....+++.++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 777 7777777777777777765 445432 1 22223578999999999987644 45677777777764
Q ss_pred -------EEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364 149 -------FLETSAKSAHNVNELFYEIGDCTECFSL 176 (178)
Q Consensus 149 -------~~~~Sa~~~~~i~~~~~~l~~~i~~~~~ 176 (178)
++++||++|.|++++|++|.+.+...+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876543
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=2.8e-28 Score=172.35 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=118.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc------hhhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA------PMYY 80 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~~ 80 (178)
+.+.++|+++|++|+|||||+++|++..+.....+..+.......+..++ +.+.+||+||...+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 34679999999999999999999998765433334444444344444444 678899999987765432 4454
Q ss_pred --cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+...+.+.. ....+++.++++++++||++|.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999865432 34445543 3789999999999876555543 4677888899999999999999
Q ss_pred CHHHHHHHHHhhcc
Q 030364 159 NVNELFYEIGDCTE 172 (178)
Q Consensus 159 ~i~~~~~~l~~~i~ 172 (178)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998764
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=4.1e-29 Score=166.81 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=113.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 79 (178)
+..+|+++|.+|+|||||+++|.+.... ....+..+.+.....+.+++. .+.+||+||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987642 122333444555566667764 4679999998543211 1235
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
++.+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+... .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999887763 4677777666556799999999999854211 11223467999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 030364 160 VNELFYEIGDCTECF 174 (178)
Q Consensus 160 i~~~~~~l~~~i~~~ 174 (178)
++++|++|.+.+...
T Consensus 153 v~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 153 VDVLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999887643
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=1.6e-28 Score=161.79 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-------hhccchhhhcC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YHSLAPMYYRG 82 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~ 82 (178)
.||+++|.+|+|||||++++.++.+. ....+..+.+........++. .+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988743 222333333444555566664 677999999876 34455667899
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN 161 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (178)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. ++...++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998543322 112222222 468899999999997652 2223344 4666 89999999999999
Q ss_pred HHHHHHHhhc
Q 030364 162 ELFYEIGDCT 171 (178)
Q Consensus 162 ~~~~~l~~~i 171 (178)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=3e-29 Score=193.79 Aligned_cols=164 Identities=19% Similarity=0.266 Sum_probs=125.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEE------Ee--CCeEEEEEEEeCCCchhhhccchh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL------SL--NEVTIKFDIWDTAGQERYHSLAPM 78 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~i~d~~g~~~~~~~~~~ 78 (178)
....+||+++|.+|||||||++++.++.+...+.++.+.+...... .. ++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4568999999999999999999999998887778888777665421 12 334578899999999999999999
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
+++.+|++++|+|+++. +.+..|+..+.... ++.|+++|+||+|+.....+..++...++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999865 44567777777763 478999999999998877777788888888889999999999999
Q ss_pred CHHHHHHHHHhhcccc
Q 030364 159 NVNELFYEIGDCTECF 174 (178)
Q Consensus 159 ~i~~~~~~l~~~i~~~ 174 (178)
|+++++++|.+.+...
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=3.8e-28 Score=175.77 Aligned_cols=165 Identities=15% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh----------
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------- 73 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------- 73 (178)
+.+.+.-.|+++|.+|||||||+|+|++.++... ..+..+..........+ ..+++.+|||||...+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 4556788999999999999999999998876531 22222222223333333 13678899999985433
Q ss_pred ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEE
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLE 151 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 151 (178)
.....++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+.+..+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4556778999999999999998777776666666655 368999999999987444444566677777765 78999
Q ss_pred EeCCCCCCHHHHHHHHHhhccc
Q 030364 152 TSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
+||++|.|+++++++|.+.+..
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999998764
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.95 E-value=2.2e-28 Score=173.82 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=115.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhhc-
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR- 81 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 81 (178)
..++|+++|++|||||||+|+|++........+ +.+.......+.. .+.+.+||+||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998753322223 3333333444454 5678899999987765 34455555
Q ss_pred -CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
.+|++++|+|+++.+.. ..|...+.. .+.|+++++||+|+.....+. .....+++.++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986544 344455544 478999999999987655444 3556788888999999999999999
Q ss_pred HHHHHHHHhhcc
Q 030364 161 NELFYEIGDCTE 172 (178)
Q Consensus 161 ~~~~~~l~~~i~ 172 (178)
+++|++|.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2.5e-27 Score=160.73 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=112.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA 76 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 76 (178)
+...++|+++|.+|+|||||++++.++.. ....++.+.+........+. .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 34578999999999999999999998873 33455555444444433433 466999999 66677777
Q ss_pred hhhhcCC---cEEEEEEECCCHhHH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHH-cCCe
Q 030364 77 PMYYRGA---AAAVVVYDITSMDSF--ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE-NGLS 148 (178)
Q Consensus 77 ~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~ 148 (178)
..+++.+ |++++|+|++++.+. ..+..|+. .. +.|+++|+||+|+....+ ...++...++.. .+++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 7777766 999999999875333 22323332 22 689999999999865432 223344555555 3479
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 149 FLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
++++||++|.|++++|++|.+.+..
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999988753
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=3.3e-28 Score=171.71 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------cchhhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY 80 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 80 (178)
.+|+++|.+|+|||||+|+|++........+..+.+.....+.+++. .+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988654444455555566666666664 678999999866653 345566
Q ss_pred --cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364 81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (178)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
..+|++++|+|+++.+....+..+ +. ..+.|+++|+||+|+........ ....+.+.++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 889999999999986655443322 22 23789999999999876544332 3455777889999999999999
Q ss_pred CHHHHHHHHHhh
Q 030364 159 NVNELFYEIGDC 170 (178)
Q Consensus 159 ~i~~~~~~l~~~ 170 (178)
|+++++++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999886
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=8.5e-28 Score=171.34 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=116.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc----------chh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APM 78 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~ 78 (178)
+.++|+++|.+|+|||||+|+|++........+..+.+.....+...+. .+.+||+||...+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 3689999999999999999999987754444455555555555555554 5679999998766521 222
Q ss_pred h--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 79 Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 79 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
+ ...+|++++|+|+++.+....+. ..+... +.|+++|+||+|+.+..... .....+++.++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 3 27899999999999866544433 333333 68999999999987654432 234667778899999999999
Q ss_pred CCCHHHHHHHHHhhccc
Q 030364 157 AHNVNELFYEIGDCTEC 173 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~~ 173 (178)
|.|+++++++|.+.+..
T Consensus 153 g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=2e-27 Score=164.63 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=110.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCc----------hhhhcc
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQ----------ERYHSL 75 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~----------~~~~~~ 75 (178)
....++|+|+|.+|+|||||+++|++...........+.+......... .....+.+|||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3457899999999999999999999886322233333333333333333 33457789999994 444555
Q ss_pred chhhhcC---CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HH-HHHHHHH-----
Q 030364 76 APMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EE-GELYAQE----- 144 (178)
Q Consensus 76 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~-~~~~~~~----- 144 (178)
...++.. +|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+........ .. ...+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 5566655 78899999999753322 2233344433 4789999999999876443211 11 1222222
Q ss_pred -cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 145 -NGLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 145 -~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
.+++++++||++|.|+++++++|.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 567999999999999999999999987643
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=7.3e-27 Score=166.43 Aligned_cols=157 Identities=22% Similarity=0.190 Sum_probs=119.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhh--
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY-- 80 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-- 80 (178)
+.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++. .+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 3689999999999999999999988764445555555665666666664 478999999876655 344555
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
..+|++++|+|+++.+ ....++..+... ...|+++++||+|+......... ...+.+.++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999999853 223344444443 23899999999998765544433 66677888999999999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
++++++|.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.1e-26 Score=167.34 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=108.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPM 78 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~ 78 (178)
.+..+|+++|.+|+|||||+|+|++.++.. ...+.++..........+ ..++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999887642 122222222222223333 46788999999765 4445567
Q ss_pred hhcCCcEEEEEEECCCHhHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCccccc-cCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 79 YYRGAAAAVVVYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
+++.+|++++|+|++++.+.. ..|+ ..+... .++.|+++|+||+|+..... + .+....+ ....+++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence 789999999999999764433 2333 344333 35789999999999865433 2 1122222 1235899999999
Q ss_pred CCCHHHHHHHHHhhcc
Q 030364 157 AHNVNELFYEIGDCTE 172 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~ 172 (178)
|.|+++++++|.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999998764
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-27 Score=164.93 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=104.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC-
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG- 82 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~- 82 (178)
..+.++|+++|++|+|||||+++|.+..+... +.++.+..+ ..+.+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 44689999999999999999999999876542 333333221 34567899999999998888888877
Q ss_pred ---CcEEEEEEECC-CHhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccccC------HHHHHHHHHHcCCe
Q 030364 83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLS 148 (178)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 148 (178)
+|++++|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.....+. .++...++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888898888888777654 34689999999999997655433 34455666666678
Q ss_pred EEEEeCCCCCC
Q 030364 149 FLETSAKSAHN 159 (178)
Q Consensus 149 ~~~~Sa~~~~~ 159 (178)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 88888887754
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=5.9e-26 Score=172.22 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=99.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc--------hhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 79 (178)
..++|+++|.+|+|||||+|+|.+... .....+.++.+.....+.+++ +.+.+|||||...+.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 367899999999999999999998753 222334444455555566666 467899999987765433 346
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
+..+|++++|+|++++.+++.+..+...+... .+.|+++|+||+|+...... ....+.+....+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 78999999999999987775433333333332 27899999999999765443 12334443347899999999999
Q ss_pred HHHHHHHHHhhcc
Q 030364 160 VNELFYEIGDCTE 172 (178)
Q Consensus 160 i~~~~~~l~~~i~ 172 (178)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=7e-26 Score=171.02 Aligned_cols=161 Identities=20% Similarity=0.159 Sum_probs=113.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA 76 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 76 (178)
...++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999987653 222333334444445566664 4779999997 4444433
Q ss_pred h-hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-HHH----HHHcCCeEE
Q 030364 77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELY----AQENGLSFL 150 (178)
Q Consensus 77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~ 150 (178)
. .+++.+|++++|+|++++.++... .|+..+.. .+.|+++|+||+|+.+......++. ..+ ....+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 477889999999999998777665 45555543 4789999999999976554332222 222 222468999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
++||++|.|++++|+++.+.+...
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877643
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=9.8e-25 Score=160.95 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=118.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---------cchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPM 78 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~ 78 (178)
...++|+++|.+|+|||||+++|.+........+..+..........++ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4578999999999999999999998764322222222233333333343 5678999999743211 1123
Q ss_pred hhcCCcEEEEEEECCCHh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364 79 YYRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.....+ ++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445699999999999876 67777788888776533 7899999999999765433 345556667889999999999
Q ss_pred CCCHHHHHHHHHhhccc
Q 030364 157 AHNVNELFYEIGDCTEC 173 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~~ 173 (178)
|+|+++++++|.+.+..
T Consensus 320 g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.6e-25 Score=169.98 Aligned_cols=161 Identities=22% Similarity=0.201 Sum_probs=115.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA 76 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 76 (178)
...++|+++|.+|+|||||+++|.+... .....+..+.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997642 2222333333333344555664 677999999 56666655
Q ss_pred h-hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEE
Q 030364 77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFL 150 (178)
Q Consensus 77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 150 (178)
. .+++.+|++++|+|++++.. +....++..+.. .+.|+++|+||+|+.+.+....++....++.. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 47889999999999997543 222344444444 47899999999999876665555555555543 57999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
++||++|.|++++|++|.+.+...
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 130
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.93 E-value=9.6e-26 Score=165.21 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=102.3
Q ss_pred EEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceE
Q 030364 50 QVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIM 118 (178)
Q Consensus 50 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~ 118 (178)
..+.++ .+.+.+||++|++.++..|..++++++++|+|||+++ .++++....|+..+.... ..+.|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 334444 4788899999999999999999999999999999998 467888888888887643 368999
Q ss_pred EEEEeCCCCcccc---------------ccCHHHHHHHHH-----------HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 119 FLVANKVDLEEKR---------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 119 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++++||+|+.... .+..+++..++. ..++.+++|||++|.||+++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985432 355677777776 35678999999999999999999998876
Q ss_pred cccc
Q 030364 173 CFSL 176 (178)
Q Consensus 173 ~~~~ 176 (178)
+..+
T Consensus 344 ~~~l 347 (353)
T 1cip_A 344 KNNL 347 (353)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 5443
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=9.7e-25 Score=163.31 Aligned_cols=167 Identities=15% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEE-------E---------Ee---CCeEEEEEEEe
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV-------L---------SL---NEVTIKFDIWD 65 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~~---~~~~~~~~i~d 65 (178)
+..++.++|+++|++++|||||+++|++........ ....+..... . .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 445678999999999999999999999754322110 0000000000 0 00 11236889999
Q ss_pred CCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHHHHH
Q 030364 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQ 143 (178)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~ 143 (178)
+||++.|.......+..+|++++|+|++++.++.....++..+.... ..|+++++||+|+.+...... ++...+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776777777777666553 257999999999876433211 12222222
Q ss_pred H---cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 144 E---NGLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 144 ~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
. .+++++++||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 2 157999999999999999999999877543
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=1.2e-25 Score=164.20 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchhhh---cCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMYY---RGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~d 84 (178)
+|+++|.+|||||||+++|++........+..+.......+.+++ ...+.+||+||... +..+...++ +.++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 688999999999999999997654211122222222233344544 14678999999643 222334444 4599
Q ss_pred EEEEEEECCC---HhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCC
Q 030364 85 AAVVVYDITS---MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA 157 (178)
Q Consensus 85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 157 (178)
++++|+|+++ +++++.+..|..++.... ..+.|+++|+||+|+.... +....+.+.+. ++++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 788999998988888764 3589999999999986532 33455666665 78999999999
Q ss_pred CCHHHHHHHHHhhccccc
Q 030364 158 HNVNELFYEIGDCTECFS 175 (178)
Q Consensus 158 ~~i~~~~~~l~~~i~~~~ 175 (178)
.|+++++.+|.+.+...+
T Consensus 315 ~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhhCc
Confidence 999999999999887654
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=3.3e-26 Score=171.10 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=113.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMY 79 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~ 79 (178)
...++|+++|.+|+|||||+++|++..+. ....+..+.+.....+.+.+. ..+.+|||||+..+... ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 45789999999999999999999987653 222333334444455555553 26789999999876654 2447
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
+..+|++++|+|++..+ ....|+..+... +.|+++|+||+|+...... +....+.+.++++++++||++|.|
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence 88999999999994333 234556666554 7899999999999775544 555666667789999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030364 160 VNELFYEIGDCTE 172 (178)
Q Consensus 160 i~~~~~~l~~~i~ 172 (178)
++++|++|.+.+.
T Consensus 183 I~eL~~~L~~~l~ 195 (423)
T 3qq5_A 183 FDDIGKTISEILP 195 (423)
T ss_dssp TTTHHHHHHHHSC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999884
No 134
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.92 E-value=1.6e-24 Score=158.70 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=94.0
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~ 125 (178)
..+.+++||++|++.++..|..++++++++|+|||++ +.++++....|+..+.... .++.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7889999999998887643 4689999999999
Q ss_pred CCccccc--c-------------------CHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHHHH
Q 030364 126 DLEEKRK--V-------------------KNEEGELYAQE----------------NGLSFLETSAKSAHNVNELFYEIG 168 (178)
Q Consensus 126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (178)
|+...+. + ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854322 1 13455555332 234579999999999999999999
Q ss_pred hhcccc
Q 030364 169 DCTECF 174 (178)
Q Consensus 169 ~~i~~~ 174 (178)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=6.4e-24 Score=153.57 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=101.5
Q ss_pred EEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCce
Q 030364 49 TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLI 117 (178)
Q Consensus 49 ~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~ 117 (178)
...+..++ +.+++||++|++.++..|..++++++++|+|||++ +.++++....|+..+.... ..+.|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 33344444 78899999999999999999999999999999665 6677888888888876543 36899
Q ss_pred EEEEEeCCCCcccc----------------ccCHHHHHHHH----------HHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 118 MFLVANKVDLEEKR----------------KVKNEEGELYA----------QENGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 118 ~ivv~nK~D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+++++||+|+.+.+ ....+++..+. ...++.+++|||+++.||+.+|+.+.+.|
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999986544 45667777773 34567889999999999999999999988
Q ss_pred ccccc
Q 030364 172 ECFSL 176 (178)
Q Consensus 172 ~~~~~ 176 (178)
.+..+
T Consensus 317 l~~~l 321 (327)
T 3ohm_A 317 LQLNL 321 (327)
T ss_dssp HHTTC
T ss_pred HHHhH
Confidence 66544
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=2.7e-23 Score=155.73 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=104.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccC--ceeeeEEEEEEEe-------------C--C----eEEEEE
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFD 62 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 62 (178)
+++.++|+++|+.++|||||+++|.+.. +..+..+ |....+....... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4568999999999999999999998542 2222223 3322332222211 1 1 137899
Q ss_pred EEeCCCchhhhccchhhhcCCcEEEEEEECCCH----hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHH
Q 030364 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNE 136 (178)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~ 136 (178)
+||+||++.|...+...+..+|++++|+|++++ ++.+.+ ..+... ...|+++++||+|+...... ..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l----~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL----MALEIL--GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH----HHHHHT--TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH----HHHHHc--CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988777778889999999999953 344433 223322 23479999999999765432 223
Q ss_pred HHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 137 EGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 137 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
+...+.+. .+++++++||++|.|+++++++|.+.+..
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 44555544 35799999999999999999999987754
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=8.4e-24 Score=159.82 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchhhh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYY 80 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~ 80 (178)
.+|+++|.||||||||+|+|++.... ....+..+.+.......+++. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987642 223344444444556666765 467999999653 234556788
Q ss_pred cCCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-HHHHHHcCC-eEEEEeCCC
Q 030364 81 RGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 156 (178)
+.+|++++|+|+.++.+... +..| +.. .++|+++|+||+|+.... .... ..+. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~---l~~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADF---LRK---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHH---HHH---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 2222 222 268899999999986431 1222 3343 4566 789999999
Q ss_pred CCCHHHHHHHHHhhcc
Q 030364 157 AHNVNELFYEIGDCTE 172 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~ 172 (178)
|.|+++++++|.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 150 NINLDTMLETIIKKLE 165 (439)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988764
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=4.3e-24 Score=154.03 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=107.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAP 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~ 77 (178)
.+..+|+++|++|+|||||+|+|.+..+.. ...+..+..........++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999876531 1112111122222233333 578899999986 2334456
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS 156 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
.+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+.............+.+.+++ .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 67889999999999976 2222233322222 24789999999999875222223344555555665 799999999
Q ss_pred CCCHHHHHHHHHhhcc
Q 030364 157 AHNVNELFYEIGDCTE 172 (178)
Q Consensus 157 ~~~i~~~~~~l~~~i~ 172 (178)
|.|+++++++|.+.+.
T Consensus 159 g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=1.3e-23 Score=160.10 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=109.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc-------CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 80 (178)
.+.++|+++|++++|||||+++|.+.. ...+..+..+.+.....+.+++ ..+.+||+||++.|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457899999999999999999999766 1222222222222222334444 5788999999999988888899
Q ss_pred cCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEE
Q 030364 81 RGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLE 151 (178)
Q Consensus 81 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~ 151 (178)
..+|++++|+|+++ +++.+.+ ..+.. .+.|.++++||+|+.++... ..++...+.... ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999997 4444433 22332 36778999999999753221 123344445444 579999
Q ss_pred EeCCCCCCHHHHHHHHHhhcc
Q 030364 152 TSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+||++|.|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998664
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=2.4e-24 Score=163.53 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=111.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch-hhhc--------cchhh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RYHS--------LAPMY 79 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~ 79 (178)
.++|+++|.||+|||||+|+|.+.... ....+.++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 22344444455555666666 457799999987 5442 12456
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
++.+|++++|+|++++.+++... ++..+ .+.|+++|+||+|+... +..++...+.. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887765532 22222 37899999999999653 33334333332 457999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030364 160 VNELFYEIGDCTE 172 (178)
Q Consensus 160 i~~~~~~l~~~i~ 172 (178)
+++++++|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=1.5e-23 Score=157.27 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=111.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccC--ceeeeEEEEEEEe-------------C--C----eEEE
Q 030364 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIK 60 (178)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 60 (178)
...++.++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 345678999999999999999999998542 2222333 3322332222211 1 1 1368
Q ss_pred EEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--C
Q 030364 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--K 134 (178)
Q Consensus 61 ~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~ 134 (178)
+.+||+||++.|.......+..+|++++|+|++++ ++.+.+ ..+.... ..|+++++||+|+.+.... .
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l----~~~~~~~--~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL----MALQIIG--QKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH----HHHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH----HHHHHcC--CCcEEEEEECccCCCHHHHHHH
Confidence 89999999999888777778889999999999964 334333 2333332 3578999999998764321 1
Q ss_pred HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
.++...+... .+++++++||++|.|+++++++|.+.+..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2233444443 35799999999999999999999987654
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.91 E-value=1.9e-23 Score=162.03 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Cc------cCceeeeEEEEE--EEe---CCeEEEEEEEeCCCch
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQ------ESTIGAAFFTQV--LSL---NEVTIKFDIWDTAGQE 70 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~d~~g~~ 70 (178)
...+|+++|+.++|||||+++|+... ... .. +...+.+..... +.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 110 00 111222222222 222 4557899999999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--- 147 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 147 (178)
+|...+..++..+|++|+|+|++++.+......|..... .+.|+++++||+|+.... .......+.+.+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998776666666654442 368999999999997643 22334556666666
Q ss_pred eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 148 SFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 148 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+++.+||++|.|+++++++|.+.+...
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCc
Confidence 499999999999999999999987654
No 143
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.91 E-value=1.2e-23 Score=154.65 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=91.0
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD 126 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D 126 (178)
.+.+.+||++|++.++..|..++++++++|+|+|+++ .+++.....|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3778899999999999999999999999999999999 778999988888887643 46899999999999
Q ss_pred Ccccc----------------ccCHHHHHHHH--------H---HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 127 LEEKR----------------KVKNEEGELYA--------Q---ENGLSFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 127 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
+.... .+..+++..++ + ..++.+++|||+++.||+++|+++.+.+....
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 86432 25566666665 1 34678999999999999999999998876543
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=4.6e-23 Score=155.55 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=102.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC-------------------------------CCCccCceeeeEEEEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF-------------------------------FDFQESTIGAAFFTQVLSLN 55 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (178)
....++|+++|++++|||||+++|+.... ..+..+.. +.......+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi--Tid~~~~~~~ 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK--TVEVGRAYFE 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc--eEEEeEEEEe
Confidence 34689999999999999999999965311 11111222 3333333333
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---HH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FE---RAKKWVQELQRQGNPNLI-MFLVANKVDLE 128 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~ 128 (178)
.....+.+||+||++.|...+...+..+|++++|+|++++.. ++ .....+..+.. .+.| +++++||+|+.
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence 334588899999999999999999999999999999998532 11 22222233322 2455 89999999985
Q ss_pred ccc------ccCHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Q 030364 129 EKR------KVKNEEGELYAQEN------GLSFLETSAKSAHNVNELFY 165 (178)
Q Consensus 129 ~~~------~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~ 165 (178)
... +...++...+.+.. +++++++||++|.|++++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 321 11122333344443 35799999999999999654
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=4.1e-23 Score=152.12 Aligned_cols=162 Identities=18% Similarity=0.090 Sum_probs=109.2
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364 10 QVK-LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY 79 (178)
Q Consensus 10 ~~~-i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 79 (178)
.++ |+++|.+|+|||||+|+|.+........+..+.+.....+.+++ ..+.+||++|.. .+.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 344 99999999999999999998765333333334444556667777 356799999961 222222 24
Q ss_pred hcCCcEEEEEEECCCHh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHc---CCeEEEEe
Q 030364 80 YRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQEN---GLSFLETS 153 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~S 153 (178)
+..+|++++|+|++++. ..+.+..+...+......+.|+++|+||+|+....... ......++... +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 68899999999999876 56666666666666555688999999999986532100 11222233444 34789999
Q ss_pred CCCCCCHHHHHHHHHhhcccc
Q 030364 154 AKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 154 a~~~~~i~~~~~~l~~~i~~~ 174 (178)
|++|.|+++++++|.+.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccc
Confidence 999999999999999877654
No 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=4.3e-23 Score=159.82 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=114.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Ccc------CceeeeEE--EEEEEe---CCeEEEEEEEeCCCc
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQE------STIGAAFF--TQVLSL---NEVTIKFDIWDTAGQ 69 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~---~~~~~~~~i~d~~g~ 69 (178)
+...+|+++|+.++|||||+++|+... ... ... ...+.+.. ...+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999998632 111 000 00111111 111112 455689999999999
Q ss_pred hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--
Q 030364 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-- 147 (178)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 147 (178)
.+|...+..++..+|++++|+|++++.+......|..... .+.|+++++||+|+.... ......++.+..++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999988899999999999999999877766666654432 478999999999997643 12334455555666
Q ss_pred -eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 148 -SFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 148 -~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+++.+||++|.|+++++++|.+.+...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 499999999999999999999987654
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.3e-24 Score=162.75 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhhhc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYR 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~ 81 (178)
..+|+++|.+|+|||||+|+|.+..... ..++.+.+..............+.+|||||.. .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876532 34445554444444444334578899999985 56667778899
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNV 160 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (178)
.+|++++|+|+.++.+... .++..+.. ..+.|+++|+||+|+....... ..+. ..++ +++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999998655443 22222222 3578999999999986532111 1122 2454 7899999999999
Q ss_pred HHHHHHHHhhccc
Q 030364 161 NELFYEIGDCTEC 173 (178)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (178)
++++++|.+.+..
T Consensus 153 ~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 153 GDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988753
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=3.5e-24 Score=162.02 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=102.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc--------hhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY 79 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 79 (178)
..++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3679999999999999999999986542 22334444444444455666 456799999986654332 235
Q ss_pred hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (178)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (178)
+..+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+......... ..+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~~~--~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLITSL--EYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGSTTC--CCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhHHH--HHhc--cCCcEEEEECCCCCC
Confidence 788999999999998765544 3344443 23699999999999765544311 1111 357899999999999
Q ss_pred HHHHHHHHHhhcccc
Q 030364 160 VNELFYEIGDCTECF 174 (178)
Q Consensus 160 i~~~~~~l~~~i~~~ 174 (178)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.90 E-value=4.7e-24 Score=152.14 Aligned_cols=162 Identities=14% Similarity=0.205 Sum_probs=93.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-c-------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-------
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER------- 71 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~------- 71 (178)
+...++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34579999999999999999999887654332 2 44455555555555566667899999999732
Q ss_pred hhccc-------hhhhc-------------CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 72 YHSLA-------PMYYR-------------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 72 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
+..+. ..++. .+|+++++++.+.......-..+++.+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22221 22222 27789999977752211111223333322 78999999999986543
Q ss_pred ccCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 132 KVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+... ..........+++++++|++++.|+++++++|.+.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3322 2334445567899999999999999999999988653
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=145.42 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=106.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC--ceeeeEEEEEEEeCCeEEEEEEEeCCCc-----------hhhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----------ERYH 73 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~-----------~~~~ 73 (178)
....++|+++|.+|+|||||++++++..+.....+ +.+.........+++ ..+.+|||||. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34579999999999999999999999887654444 333344444555666 45679999994 2344
Q ss_pred ccchhhhcCCcEEEEEEECCCHhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC------HHHHHHHHHHc
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQEN 145 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 145 (178)
.....+++.+|++++|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+....+.+..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 444555678899999999875433 22222222222221 245899999999986654433 23566777788
Q ss_pred CCeEEEEeCCCC-----CCHHHHHHHHHhhccc
Q 030364 146 GLSFLETSAKSA-----HNVNELFYEIGDCTEC 173 (178)
Q Consensus 146 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~i~~ 173 (178)
+..++.+++..+ .++.+++..+.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888888877654 6899999988777643
No 151
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=2.5e-23 Score=147.33 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=104.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc-CCCCccCc-eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc---------
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------- 76 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------- 76 (178)
.+.++|+|+|.+|+|||||++++++.. +.....++ .+..........++ ..+.+|||||...+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 457899999999999999999999877 33333333 33334444455555 467799999986553322
Q ss_pred --hhhhcCCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCccccccCH-------HHHHHHHHHc
Q 030364 77 --PMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVAN-KVDLEEKRKVKN-------EEGELYAQEN 145 (178)
Q Consensus 77 --~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~ 145 (178)
..+++.+|++++|+|+++.... ..+..++..+... ....|.++++| |+|+... .... .+...+....
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 2267889999999999862221 1222333332211 11346666666 9998743 2111 2233355555
Q ss_pred CCe---E--EEEeCCCCCCHHHHHHHHHhhccc
Q 030364 146 GLS---F--LETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 146 ~~~---~--~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
+.. + +++||++|.|++++|++|.+.+..
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 432 2 789999999999999999987764
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=2.8e-23 Score=145.94 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=104.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce--eeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhccch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI--GAAFFTQVLSLNEVTIKFDIWDTAGQ--------ERYHSLAP 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~ 77 (178)
...++|+++|.+|+|||||+|++++........+.. +..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999887654333332 2222333444555 56779999996 22222222
Q ss_pred hhh----cCCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc------CHHHHHHHHHHcC
Q 030364 78 MYY----RGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV------KNEEGELYAQENG 146 (178)
Q Consensus 78 ~~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~ 146 (178)
.++ +.+|++++|+|+++.... ..+..++..+......+.|+++++||.|+.+.... .......+.+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 233 899999999999853221 11223333332222236899999999998653211 1134566777788
Q ss_pred CeEEEEeCCC-----CCCHHHHHHHHHhhccc
Q 030364 147 LSFLETSAKS-----AHNVNELFYEIGDCTEC 173 (178)
Q Consensus 147 ~~~~~~Sa~~-----~~~i~~~~~~l~~~i~~ 173 (178)
..++.+++.. +.|++++++.|.+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8887777655 57999999999887764
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=2.3e-23 Score=159.05 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=98.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC---------------------------ccCceeeeEEEEEEEeCCeE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEVT 58 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (178)
.+.+||+++|.+++|||||+++|++... ... .....+.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999976511 000 00111222222222333344
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH------HHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER------AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
+.+.|||+||++.|......++..+|++++|+|++++.++.. ....+...... ...|++||+||+|+.+..+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 678899999999999999999999999999999998754322 22222222222 2346999999999876332
Q ss_pred cCHHH----HHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364 133 VKNEE----GELYAQEN-----GLSFLETSAKSAHNVNE 162 (178)
Q Consensus 133 ~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (178)
...++ ...+.... +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222 22233222 46899999999999975
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=7.5e-23 Score=154.63 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=105.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc-----------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA----------- 76 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 76 (178)
..++|+++|++|||||||+|++.+.... ....+..+.+.....+.+++. .+.+||++|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987542 112233333333445566775 46799999974332211
Q ss_pred -hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-----HHHHHHcCCeEE
Q 030364 77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-----ELYAQENGLSFL 150 (178)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~ 150 (178)
..++..+|++++++|++++.+.... .+...+.. .+.|+++++||+|+.+......++. ..+....+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999976555432 22232322 4789999999999876444333222 222223457999
Q ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
++||++|.|++++|+.+.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998876654
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=2e-25 Score=170.86 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (178)
+..+|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ...+.||||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999998765544444444333333333322 2367799999999999999999999999999
Q ss_pred EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHHH
Q 030364 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELY---AQEN--GLSFLETSAKSAHNVNE 162 (178)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 162 (178)
|+|++++....... .+..+. ..+.|+++++||+|+.+..... ..+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999865443332 223332 3478999999999986533211 1111111 1111 35899999999999999
Q ss_pred HHHHHHhhccc
Q 030364 163 LFYEIGDCTEC 173 (178)
Q Consensus 163 ~~~~l~~~i~~ 173 (178)
++++|...+..
T Consensus 158 Lle~I~~l~~~ 168 (537)
T 3izy_P 158 LAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhc
Confidence 99999987653
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-23 Score=141.88 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC-
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG- 82 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~- 82 (178)
..+.++|+++|++|+|||||++++.+..+... ..++.+. +...+.+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999998875431 1222211 1134567899999998888877777766
Q ss_pred ---CcEEEEEEECC-CHhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccc
Q 030364 83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ivv~nK~D~~~~~~ 132 (178)
+|++++|+|++ +++++..+..|+..+... ..++.|+++|+||+|+.+...
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999988888776553 346899999999999976544
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=5.3e-23 Score=153.59 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=110.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCc-------CCCC-------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 74 (178)
+.+||+++|++++|||||+++|.+.. +... .+...+.+.......+......+.+||+||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 47899999999999999999998741 1100 001122233333334444446788999999999988
Q ss_pred cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---cCHHHHHHHHHHcC----
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG---- 146 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 146 (178)
....++..+|++|+|+|++++..... ..++..+.. .+.| +++++||+|+.+..+ ...++...+.+..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888999999999999998543332 233333433 2677 689999999864221 11234455666555
Q ss_pred -CeEEEEeCCCCCC----------HHHHHHHHHhhccc
Q 030364 147 -LSFLETSAKSAHN----------VNELFYEIGDCTEC 173 (178)
Q Consensus 147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~i~~ 173 (178)
++++++||++|.| +++++++|.+.+..
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 6899999999764 89999999886653
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.89 E-value=4.6e-23 Score=149.62 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=93.9
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKVD 126 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D 126 (178)
.+.+++||++|++.++..|..++++++++|+|||++ +.+++.....|+..+.... ..+.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478899999999999999999999999999999998 6788998888888877653 47899999999999
Q ss_pred Cccccc---------------cCHHHHHHHHHH---------------------------cCCeEEEEeCCCCCCHHHHH
Q 030364 127 LEEKRK---------------VKNEEGELYAQE---------------------------NGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 127 ~~~~~~---------------~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~ 164 (178)
+...+. ...+++..++.. ..+.+++|||+++.+|+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 854211 134444443322 24778999999999999999
Q ss_pred HHHHhhccc
Q 030364 165 YEIGDCTEC 173 (178)
Q Consensus 165 ~~l~~~i~~ 173 (178)
+.+.+.|-+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.89 E-value=2.3e-23 Score=156.00 Aligned_cols=163 Identities=16% Similarity=0.185 Sum_probs=112.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC--------cCCCC-------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
...+.++|+++|++++|||||+++|.+. .+... .+...+.+.......++.....+.+||+||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456899999999999999999999873 11110 00122222222333444444677899999999
Q ss_pred hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC
Q 030364 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG 146 (178)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 146 (178)
.|......++..+|++|+|+|++++.. .....++..+... +.| +++++||+|+....+. ...+...+....+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888889999999999999998643 3334555555443 567 8899999998742211 1223445555554
Q ss_pred -----CeEEEEeCCCCCC------------------HHHHHHHHHhhcc
Q 030364 147 -----LSFLETSAKSAHN------------------VNELFYEIGDCTE 172 (178)
Q Consensus 147 -----~~~~~~Sa~~~~~------------------i~~~~~~l~~~i~ 172 (178)
++++++||++|.| +++++++|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999987 8888888887664
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=5.3e-23 Score=155.24 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=102.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCc----------cCce-------------------eeeEEEEEEEeCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ----------ESTI-------------------GAAFFTQVLSLNE 56 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~----------~~~~-------------------~~~~~~~~~~~~~ 56 (178)
...++|+++|++++|||||+++|+++.. .... ..+. +.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4579999999999999999999986541 1100 0110 1111111122233
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--c-
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--V- 133 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~- 133 (178)
....+.+||+||++.|...+..++..+|++++|+|++++.. .....++..+... ...|+++++||+|+.+..+ .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 34678899999999998888888999999999999998542 2233444444333 2236899999999975221 1
Q ss_pred -CHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364 134 -KNEEGELYAQENG-----LSFLETSAKSAHNVNEL 163 (178)
Q Consensus 134 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (178)
..++...+++..+ ++++++||++|.|++++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1234455666666 68999999999999874
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.89 E-value=9e-24 Score=155.76 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=87.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCcc--------CceeeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER 71 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~ 71 (178)
...++|+|+|++|+|||||+++|++.... ..+. ++.+..........++..+.+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 34689999999999999999998765432 2221 33333333333444566778999999998 55
Q ss_pred hhccch-------hhhcCCc-------------EEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364 72 YHSLAP-------MYYRGAA-------------AAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK 130 (178)
Q Consensus 72 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 130 (178)
+..+.. .++..++ +++++++.+ ..++..+. .++..+ ..+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555554 4444333 344444432 33444443 232322 367899999999999776
Q ss_pred cccCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 131 RKVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.++.. .....++..++++++++||++|.+ ++.|.++.+.+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 55543 456666777889999999999998 777777766553
No 162
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=4.6e-22 Score=147.35 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=95.4
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCC
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVDL 127 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~ 127 (178)
+.+++||++|++.++..|..++++++++|+|||+++ .++++.+..|+..+.... .++.|++|++||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 788999999999999999999999999999999999 889999999999987753 478999999999998
Q ss_pred ccccc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEeCCCCCCHHHHH
Q 030364 128 EEKRK---V---------------------------KNEEGELYA-----QE--------NGLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 128 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~ 164 (178)
...+. + ..+++..++ +. ..+.+++|||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 54332 1 123444442 22 24678899999999999999
Q ss_pred HHHHhhcccc
Q 030364 165 YEIGDCTECF 174 (178)
Q Consensus 165 ~~l~~~i~~~ 174 (178)
.++.+.+.+.
T Consensus 377 ~~v~~~I~~~ 386 (402)
T 1azs_C 377 NDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877543
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=7.8e-24 Score=159.74 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=102.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCc---------------------------cCceeeeEEEEEEEeCCeE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ---------------------------ESTIGAAFFTQVLSLNEVT 58 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 58 (178)
.+.++|+++|++++|||||+++|+.. .+.... +...+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45799999999999999999999864 222110 0011222222222333344
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHH-------HHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW-------VQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
+.+.+||+||+++|...+..++..+|++|+|+|+++ .+|+.+..| +...... .-.|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 678899999999999988889999999999999998 667754332 2222222 223589999999987521
Q ss_pred ------ccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHH
Q 030364 132 ------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNELF 164 (178)
Q Consensus 132 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (178)
+...++...++...+ ++++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 111234555666555 689999999999997543
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=6.9e-23 Score=151.29 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (178)
+|+++|++++|||||+++|+. ...+.+.....+..+ ...+.+||+||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999971 111112222223333 3568899999999998887888899999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCccccccCH--HHHHHHHHHc---CCeEEE--EeCCC---CCC
Q 030364 92 ITSMDSFERAKKWVQELQRQGNPNLIM-FLVAN-KVDLEEKRKVKN--EEGELYAQEN---GLSFLE--TSAKS---AHN 159 (178)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 159 (178)
++ ..+.....++..+... +.|. ++++| |+|+ ++..... ++...+.+.. .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3445555565555544 4566 88899 9998 4332221 3344444433 369999 99999 999
Q ss_pred HHHHHHHHHhhcc
Q 030364 160 VNELFYEIGDCTE 172 (178)
Q Consensus 160 i~~~~~~l~~~i~ 172 (178)
+++++++|.+.+.
T Consensus 167 i~~L~~~l~~~~~ 179 (370)
T 2elf_A 167 VDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999999988764
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=6.4e-22 Score=153.61 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceeeeEEEEEE------------EeCCeEEEEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~d~~g~~~~ 72 (178)
+..+|+++|++++|||||+++|.+..+.... .++.+........ ..+.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999876543211 1122211111000 00011125889999999999
Q ss_pred hccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-------------HH
Q 030364 73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------------NE 136 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-------------~~ 136 (178)
...+..++..+|++|+|+|+++ +++++.+. .+.. .+.|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999989999999999999998 66665543 2222 478999999999986432110 00
Q ss_pred ----------HHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 137 ----------EGELYAQEN---------------GLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+........ .++++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 001111111 238999999999999999999987654
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=1.7e-22 Score=155.12 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=81.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCc------------------CCCC----ccCceeeeEEEEEEEeCCeEEEEEEEe
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFDF----QESTIGAAFFTQVLSLNEVTIKFDIWD 65 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~d 65 (178)
.+..+|+++|++|+|||||+++|+... +... ..+..+.......+.+++ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 347899999999999999999996211 0000 001111111222333343 6788999
Q ss_pred CCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
|||+..|...+..+++.+|++|+|+|++++.+......| ..+.. .+.|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999987665554433 33333 4789999999999864
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=8.6e-23 Score=154.98 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC--------chhhhccchhhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--------QERYHSLAPMYY 80 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~~~ 80 (178)
...+|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 35699999999999999999999876542 344455555555555555556788999999 667777888889
Q ss_pred cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Q 030364 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHN 159 (178)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 159 (178)
+.+|++++|+|..++.... ..++..+.. ..+.|+++|+||+|+..... ...++. ..++ ..+.+||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence 9999999999988643222 223333222 25789999999999864321 111111 1232 567999999999
Q ss_pred HHHHHHHHHhhccc
Q 030364 160 VNELFYEIGDCTEC 173 (178)
Q Consensus 160 i~~~~~~l~~~i~~ 173 (178)
++++++++.+.+..
T Consensus 172 v~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 172 LGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred hHHHHHHHHhhccc
Confidence 99999999987753
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=1.3e-23 Score=159.60 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=106.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 87 (178)
++..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++ ..+.||||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999987655433222222221112223333 36779999999999999999999999999
Q ss_pred EEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--ccCHHH--HHHHHHHcC--CeEEEEeCCCCC
Q 030364 88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEE--GELYAQENG--LSFLETSAKSAH 158 (178)
Q Consensus 88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~ 158 (178)
+|+|++++ ++.+.+ ..+.. .+.|+++++||+|+.+.. .+..+. ...++..++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999873 333322 22222 478899999999996532 111110 001112222 799999999999
Q ss_pred CHHHHHHHHHhhc
Q 030364 159 NVNELFYEIGDCT 171 (178)
Q Consensus 159 ~i~~~~~~l~~~i 171 (178)
|+++++++|....
T Consensus 153 gI~eLle~I~~~~ 165 (501)
T 1zo1_I 153 GIDELLDAILLQA 165 (501)
T ss_dssp TCTTHHHHTTTTC
T ss_pred Ccchhhhhhhhhh
Confidence 9999999998653
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.87 E-value=5.3e-22 Score=161.21 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=110.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc-------CCC-------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 72 (178)
..+.++|+++|++++|||||+++|.+.. +.. ..+.+.+.+.......++.....+.+|||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998741 000 01122233322222334444567889999999999
Q ss_pred hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC--
Q 030364 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG-- 146 (178)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 146 (178)
.......+..+|++|+|+|++++... +...++..+... +.| +++++||+|+.+..+. ..++...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888889999999999999986432 233444444443 567 7899999999752221 1234455565554
Q ss_pred ---CeEEEEeCCCC--------CCHHHHHHHHHhhcc
Q 030364 147 ---LSFLETSAKSA--------HNVNELFYEIGDCTE 172 (178)
Q Consensus 147 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~i~ 172 (178)
++++++||++| .|+++++++|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 469999999988665
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.5e-23 Score=158.99 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=99.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-----------------------------CceeeeEEEEEEEeCCe
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------------------STIGAAFFTQVLSLNEV 57 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 57 (178)
..+.++|+++|++++|||||+++|++....-... ...+.+.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3458999999999999999999998653211000 00111211111222223
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
.+.+.||||||++.|......++..+|++|+|+|++++.. + ......+..+... ...|++||+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence 4578899999999999988889999999999999997531 1 1112222222222 234589999999987532
Q ss_pred ccC----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHHH
Q 030364 132 KVK----NEEGELYAQEN-----GLSFLETSAKSAHNVNEL 163 (178)
Q Consensus 132 ~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 163 (178)
+.. ..+...+.... +++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 211 12223333333 369999999999999865
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=6.6e-23 Score=155.80 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=89.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCC---------------------c------cCceeeeEE--EEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF---------------------Q------ESTIGAAFF--TQVLSLN 55 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~---------------------~------~~~~~~~~~--~~~~~~~ 55 (178)
.++.++|+++|++++|||||+++|+.. .+... . +...+.+.. ...+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 355789999999999999999999752 21100 0 000111111 1122333
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR 131 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~ 131 (178)
...+.+||+||++.|...+...+..+|++|+|+|++++. +|+....+...+......+.| ++|++||+|+....
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 357889999999999998888899999999999999863 333211222222221123566 89999999985421
Q ss_pred ------ccCHHHHHHHHHHc-------CCeEEEEeCCCCCCHHHHH
Q 030364 132 ------KVKNEEGELYAQEN-------GLSFLETSAKSAHNVNELF 164 (178)
Q Consensus 132 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 164 (178)
+....+...++... +++++++||++|.|+++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11122344555544 4679999999999998755
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=3.2e-23 Score=157.15 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=100.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCC-----------------------------ccCceeeeEEEEEEEeC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----------------------------QESTIGAAFFTQVLSLN 55 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 55 (178)
..+.++|+++|++++|||||+++|++. .+... .....+.+.... .+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFE 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEe
Confidence 346899999999999999999999864 11110 001111111112 223
Q ss_pred CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNLI-MFLVANKVDLE 128 (178)
Q Consensus 56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~ 128 (178)
.....+.+||+||++.|......++..+|++|+|+|++++. +|+ .....+..+.. .+.| +++++||+|+.
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 33467889999999999988888999999999999999753 221 22233333332 2454 89999999987
Q ss_pred cccc----cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364 129 EKRK----VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL 163 (178)
Q Consensus 129 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (178)
+..+ ...++...+++..+ ++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3111 11233444555554 68999999999998743
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=3.9e-21 Score=131.77 Aligned_cols=159 Identities=12% Similarity=0.107 Sum_probs=98.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhccch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAP 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 77 (178)
.+..+|+++|++|||||||++++.+..+.....++.+.+.......+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4578999999999999999999997764444455666554433333333 456999999732 222223
Q ss_pred hhh---cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHHcC--CeEE
Q 030364 78 MYY---RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENG--LSFL 150 (178)
Q Consensus 78 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~ 150 (178)
.++ ..++++++++|++++.+.... .....+.. .+.|+++++||+|+....+ ........++...+ +.++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 333 468999999999976544321 11111222 3678899999999864322 11234444444443 5789
Q ss_pred EEeCCCCCCHHHHHHHHHhhccc
Q 030364 151 ETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
++||+++.|+++++++|.+.+..
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999887654
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=7.9e-22 Score=142.15 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------cCcee--------------------eeE--------------
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIG--------------------AAF-------------- 47 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------~~~~~--------------------~~~-------------- 47 (178)
...++|+|+|.+|+|||||+|+|++..+.+.. .|+.. .+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999988764221 12100 000
Q ss_pred -----------EEEEEEeCCeEEEEEEEeCCCch-------------hhhccchhhhcCCcEEE-EEEECCCHhHHHHHH
Q 030364 48 -----------FTQVLSLNEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDITSMDSFERAK 102 (178)
Q Consensus 48 -----------~~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 102 (178)
....+... ....+.+|||||.. .+......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000001 02578899999963 34456667888888776 799998754433322
Q ss_pred HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH--cC-CeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NG-LSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 103 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
.++..+. ..+.|+++|+||+|+.+............... .+ .+++++||++|.|+++++++|.+..
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3333332 35789999999999875443222221110001 12 3688999999999999999987743
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.2e-22 Score=158.03 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC---------------------------ccCceeeeEEEEEEEeCCe
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEV 57 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (178)
..+.++|+++|++++|||||+++|+.... ... .....+.+.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45688999999999999999999964210 000 0001222222223333334
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HH---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SF---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~ 130 (178)
...+.||||||+..|.......+..+|++|+|+|++++. .+ ......+..+... +.| ++||+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence 467889999999999998888999999999999998642 11 1112222333333 454 8999999998652
Q ss_pred cc-c---CHHHHHHHH-HHcCC-----eEEEEeCCCCCCHH--------------HHHHHHHhhc
Q 030364 131 RK-V---KNEEGELYA-QENGL-----SFLETSAKSAHNVN--------------ELFYEIGDCT 171 (178)
Q Consensus 131 ~~-~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~--------------~~~~~l~~~i 171 (178)
.. . ...+...+. ...++ +++++||++|.|+. .+++.|.+.+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 21 1 112233333 33344 79999999999998 7888877654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.84 E-value=3.2e-20 Score=146.29 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=80.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----------------ceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
.+..+|+++|++|+|||||+++|.+......... ..+.++......+....+.+++||+||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4578999999999999999999985332100000 011121112222222346788999999999
Q ss_pred hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
|......+++.+|++++|+|+++...... ..++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99888999999999999999887543332 344444444 368899999999986
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.83 E-value=5.2e-20 Score=137.36 Aligned_cols=160 Identities=17% Similarity=0.104 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchh---hhcCCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPM---YYRGAA 84 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~~~~~d 84 (178)
.|+++|++|||||||++.+.+....-...+..+.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999987643111111111122223334443 24577999999632 2222222 245799
Q ss_pred EEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 85 AAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
.+++++|++ ...+..+..+.+++.... ....|.++++||+|+... . ..+.........+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 566777776666665542 235788999999998754 1 12333444455678999999999999999
Q ss_pred HHHHHHhhccccc
Q 030364 163 LFYEIGDCTECFS 175 (178)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (178)
++++|.+.+...+
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887544
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=1.3e-19 Score=128.30 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc-----
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR----- 81 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----- 81 (178)
.+.++|+++|.+|+|||||+++|++..... ...+..+..........++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 358999999999999999999999877522 1222222233334445555 47789999999877666555443
Q ss_pred ----CCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 030364 82 ----GAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEK 130 (178)
Q Consensus 82 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~ 130 (178)
.+|++++|++++... +.. -..++..+......+ .|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987644 332 245666666543333 489999999998543
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.82 E-value=6.1e-20 Score=145.19 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=82.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC--------c--------cCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--------Q--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 68 (178)
.....+|+++|++|+|||||+++|+... +... . ....+.......+.++ .+.+.+|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence 3568899999999999999999998421 1000 0 0011111112222333 36788999999
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+..|...+..+++.+|++|+|+|++++.+......|. .+.. .+.|+++++||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 9999988999999999999999999877766654443 3333 3789999999999864
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.82 E-value=9.4e-20 Score=144.21 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceee------------eE----------------------------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGA------------AF---------------------------- 47 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~------------~~---------------------------- 47 (178)
..++|+|+|.+|+|||||+|+|++....+. ..|++.. +.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 478999999999999999999998765331 2222210 00
Q ss_pred -------------EEEEEEeCCeE--EEEEEEeCCCchhh---hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHH
Q 030364 48 -------------FTQVLSLNEVT--IKFDIWDTAGQERY---HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ 109 (178)
Q Consensus 48 -------------~~~~~~~~~~~--~~~~i~d~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (178)
....+.++... ..+.+|||||.... ......+++.+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111100 24789999997653 3445678899999999999998777666554443332
Q ss_pred HhCCCCceEEEEEeCCCCccccccCHH----------HHH-----HHHHH--------cCCeEEEEeCC-----------
Q 030364 110 RQGNPNLIMFLVANKVDLEEKRKVKNE----------EGE-----LYAQE--------NGLSFLETSAK----------- 155 (178)
Q Consensus 110 ~~~~~~~~~ivv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~Sa~----------- 155 (178)
. .+.|+++|+||+|+.....+..+ ... .+... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 36789999999998654311111 011 11111 12479999999
Q ss_pred ---CCCCHHHHHHHHHhhccc
Q 030364 156 ---SAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 156 ---~~~~i~~~~~~l~~~i~~ 173 (178)
++.|+++++++|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.82 E-value=2.2e-19 Score=138.00 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=77.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 67 (178)
.+..+|+++|++|+|||||+++|+.... ... ..+..+.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3578999999999999999999986321 000 00111111111112222234678899999
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
|+..|......++..+|++|+|+|++++.... ...++..+ ...+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999888888999999999999999753221 22222222 235789999999999854
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=1.6e-19 Score=128.49 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=78.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchh-------h
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-------Y 79 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~ 79 (178)
...++|+++|.+|+|||||+|+|++..+... ..+..+..........+ .+.+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 3589999999999999999999998775321 11111112222223333 367889999998665543221 1
Q ss_pred --hcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCcccc
Q 030364 80 --YRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEKR 131 (178)
Q Consensus 80 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~~ 131 (178)
...+|++++|+|++.. ++.. -..|+..+......+ .|+++|+||+|+..+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2468999999998753 2332 235666665543333 6899999999986544
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.81 E-value=8.5e-21 Score=136.76 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=84.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC-cCCCCc--------cCceeeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER 71 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~ 71 (178)
...++|+++|++|+|||||+++|.+. .++... .++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45789999999999999999998865 333222 111111111122222444578899999997 44
Q ss_pred hhccch-------hhhcC-------------CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 72 YHSLAP-------MYYRG-------------AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 72 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
+..... .++.. +++++++.+.+. .+++.+. ...+... ..+.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 443332 33322 233555555432 1233222 1223332 2467899999999987654
Q ss_pred cc--CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 132 KV--KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++ ..++...+++.++++++++||+++ |++++|.++.+.+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 43 235667788889999999999999 99999999988774
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=1.6e-18 Score=137.29 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=84.9
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC-----------cc---CceeeeEE--EEEEEeC-----Ce
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QE---STIGAAFF--TQVLSLN-----EV 57 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~-----------~~---~~~~~~~~--~~~~~~~-----~~ 57 (178)
|.+........+|+|+|+.++|||||+++|+... +... +. ...+.+.. ...+.++ +.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 4433445568899999999999999999997531 1110 00 01111111 1122222 33
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+.+.||||||+.+|...+..+++.+|++|+|+|+++.........| ..... .+.|+++++||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 48899999999999988889999999999999999987554443333 33332 3788999999999854
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.81 E-value=1.4e-20 Score=138.90 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=101.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeee-EEEE--------------------------------------
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQ-------------------------------------- 50 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~-~~~~-------------------------------------- 50 (178)
..+|+|+|.+|||||||+++|.+..+.+......+.. ....
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4599999999999999999999977633222211100 0000
Q ss_pred -------------EEE-eCCeEEEEEEEeCCCchhh-------------hccchhhhcCCcEEEEEEECCCHhHHHHHHH
Q 030364 51 -------------VLS-LNEVTIKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDITSMDSFERAKK 103 (178)
Q Consensus 51 -------------~~~-~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 103 (178)
... .......+.+||+||...+ ......++..+|++|+++|.++.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 000 0011235789999997665 445677899999999999876533221 23
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364 104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (178)
++..+......+.|+++|+||+|+........+....+...++.+|+.+|+.++.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 344444444457899999999998765544433333344456789999999999888765544
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=2.9e-19 Score=141.38 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=85.4
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC-----------c-----cCceeeeEEEEEEEeCCeEEEEE
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF-----------Q-----ESTIGAAFFTQVLSLNEVTIKFD 62 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~ 62 (178)
|++........+|+++|++|+|||||+++|+. +.+... + .+..+.......+.+++ +.+.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~ 78 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVN 78 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEE
Confidence 45555566789999999999999999999985 222100 0 00111111112233343 6788
Q ss_pred EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+|||||+..+......+++.+|++++|+|++++.+......| ..+.. .+.|+++++||+|+..
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSTT
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH---cCCCEEEEEECCCccc
Confidence 999999999888888899999999999999987666555444 33443 3789999999999854
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=2.2e-20 Score=134.73 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=110.1
Q ss_pred HHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh-HHHHHH
Q 030364 25 SLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAK 102 (178)
Q Consensus 25 tl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 102 (178)
+|+.++..+.+. ..+.||.+..+. .....++ .+.+||+ ++.++.++..+++++|++++|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577778888887 778899885544 2222222 6789999 8889999999999999999999999987 788888
Q ss_pred HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 103 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.|+..+.. .+.|+++|+||+|+.+.+.+ ++...+++.++ +++++|||++|.|++++|.++...+-
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv 172 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKIS 172 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEE
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeE
Confidence 99887755 47899999999999764433 44566666666 89999999999999999998876543
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=1.8e-19 Score=130.76 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=68.0
Q ss_pred EEEEEEeCCCchh-------------hhccchhhhcCCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364 59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 124 (178)
Q Consensus 59 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~nK 124 (178)
..+.+|||||... +......++..+|++++|+|.++.... .....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4688999999743 445566788999999999997532211 1111222222 2347899999999
Q ss_pred CCCccccccCHHHHHHHHHHcCCeEEEEeCCC------CCCHHHHHHHHHhhcc
Q 030364 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKS------AHNVNELFYEIGDCTE 172 (178)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~~i~ 172 (178)
+|+........+.........+..++++|+.. +.|++++++.+.+.+.
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 99875443212211110011225677766544 7899999998877654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=2.7e-20 Score=138.50 Aligned_cols=85 Identities=19% Similarity=0.061 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEE--E-------------------EeCC-eEEEEEEEeCCC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV--L-------------------SLNE-VTIKFDIWDTAG 68 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~d~~g 68 (178)
++|+++|.+|+|||||+|+|++........|..+.+..... + .+++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632111111111111111 1 1122 247899999999
Q ss_pred chhh----hccc---hhhhcCCcEEEEEEECCCH
Q 030364 69 QERY----HSLA---PMYYRGAAAAVVVYDITSM 95 (178)
Q Consensus 69 ~~~~----~~~~---~~~~~~~d~~i~v~d~~~~ 95 (178)
.... ..+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 2222 2456899999999999875
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=134.20 Aligned_cols=160 Identities=15% Similarity=0.222 Sum_probs=81.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc--------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----- 74 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----- 74 (178)
...++|+|+|++|+|||||++.|++..+.... .++.............+....+.+||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34678999999999999999999987653111 11111111111122233345789999999754311
Q ss_pred --------------------cchhhhcCCcEEEEEEECCCH-hHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 75 --------------------LAPMYYRGAAAAVVVYDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 75 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
+...++.++++.+++|..... .++.... .|+..+. .+.|+++|+||+|+....+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 112334555544444444322 2333332 4444442 3789999999999876555
Q ss_pred cCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 133 VKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
+.. .....++..++++++++|++++.+++++|..|.+.+
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 544 556777788899999999999999999888887654
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2.2e-18 Score=118.98 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=94.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeee--------------EEEEEEEe----------------CCeE
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--------------FFTQVLSL----------------NEVT 58 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 58 (178)
...+|+++|.+|+|||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35689999999999999999998753211100000000 00111111 1123
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (178)
+.+.+||++|..... ..+....+.+++|+|+.+.... ...+... . +.|.++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 467799998851100 0111256789999998865321 1111111 1 467899999999865433344555
Q ss_pred HHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 139 ELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 139 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
....+.. +++++++||++|.|+++++++|.+.+..+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 5555543 479999999999999999999999887654
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.74 E-value=3.4e-20 Score=128.53 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=91.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE------------EEEEEeC-CeE-----------------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF------------TQVLSLN-EVT----------------- 58 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 58 (178)
+..+|+++|.+|||||||+++|....+...+.++...++. .....++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987654433333333221 1111111 111
Q ss_pred --EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364 59 --IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (178)
Q Consensus 59 --~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (178)
..+.++|++|.-... ..+-...+..+.++|......... .+... .+.|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 123344544421000 001112344566676532111100 00011 14677999999998765444556
Q ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364 137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCTECF 174 (178)
Q Consensus 137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 174 (178)
+...+++.. +++++++||++|.|++++|++|.+.+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 666666543 57999999999999999999999887654
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=7e-17 Score=118.25 Aligned_cols=163 Identities=15% Similarity=0.018 Sum_probs=99.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh-
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH- 73 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 73 (178)
.++|+++|.||+|||||+|+|++........|..+.+.....+.+++. ...+.+||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642222221111111122334432 1568899999986543
Q ss_pred ---cc---chhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHH-----------------------------
Q 030364 74 ---SL---APMYYRGAAAAVVVYDITSM----------DSFERAKKWVQEL----------------------------- 108 (178)
Q Consensus 74 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 108 (178)
.+ ...+++.+|++++|+|+++. +.++.+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 22 22357899999999999862 2233222111111
Q ss_pred -----------H-------------------Hh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC-
Q 030364 109 -----------Q-------------------RQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS- 156 (178)
Q Consensus 109 -----------~-------------------~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~- 156 (178)
. .. ....+|+++++|+.|..-...........++...+++++++||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E 241 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIE 241 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHH
Confidence 0 00 123599999999998642112234556677777899999999542
Q ss_pred ---------------------CCCHHHHHHHHHhhcc
Q 030364 157 ---------------------AHNVNELFYEIGDCTE 172 (178)
Q Consensus 157 ---------------------~~~i~~~~~~l~~~i~ 172 (178)
+.|++.+.....+.+.
T Consensus 242 ~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~ 278 (363)
T 1jal_A 242 SEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (363)
T ss_dssp HHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence 3677777776665543
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.73 E-value=4.8e-18 Score=125.13 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=69.8
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (178)
+.+.||||||... .....+..+|++++|+|....+....+. ....+.|.++|+||+|+........ ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~~~-~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEARL-AA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHHHH-HH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHHHH-HH
Confidence 5788999999532 2233458899999999988654432221 1112468899999999865332211 11
Q ss_pred HHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364 139 ELYAQ----------ENGLSFLETSAKSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 139 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 173 (178)
..+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12221 125789999999999999999999887654
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=2.2e-19 Score=132.18 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=92.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc----eeeeEE------------------------------------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST----IGAAFF------------------------------------ 48 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~----~~~~~~------------------------------------ 48 (178)
...+|+|+|.+|+|||||+|+|.+..+.+..... ++....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999988764222111 110000
Q ss_pred ---------EEEEEe-CCeEEEEEEEeCCCch-------------hhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHH
Q 030364 49 ---------TQVLSL-NEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKW 104 (178)
Q Consensus 49 ---------~~~~~~-~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 104 (178)
...+.+ ......+.+|||||.. .+..+...++..++ +++++.|++....-.. +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 000000 0012468899999963 33445556666665 4555666654221111 2
Q ss_pred HHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH--HHHHcC-CeEEEEeCCCCCCHHHHHHHHHh
Q 030364 105 VQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL--YAQENG-LSFLETSAKSAHNVNELFYEIGD 169 (178)
Q Consensus 105 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 169 (178)
...+......+.|+++|+||+|+.+........... +....+ .+++.+||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333334578999999999986543311111110 000123 36788999999999999999876
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=4.8e-16 Score=120.04 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=80.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCc------------------CCC----CccCceeeeEEEEEEEeCCeEEEEEEEeC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFD----FQESTIGAAFFTQVLSLNEVTIKFDIWDT 66 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 66 (178)
+..+|+|+|+.++|||||..+|+... +.. +.....+.......+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 57899999999999999999986311 000 0111111111222334444 67889999
Q ss_pred CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
||+.+|.......++-+|++|+|+|+..+-..... ..++....+ +.|.++++||+|.+.
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchh
Confidence 99999999999999999999999999986433332 333444444 789999999999754
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=8.3e-17 Score=129.78 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CC--------------CccC--ceeeeEEEEEEE------------eCC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQES--TIGAAFFTQVLS------------LNE 56 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~--------------~~~~--~~~~~~~~~~~~------------~~~ 56 (178)
.....||+|+|++++|||||+++|+.... .. +..+ |.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 44578999999999999999999987421 00 0011 111111122222 234
Q ss_pred eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
..+.+.+|||||+.+|...+..+++.+|++|+|+|++++.++.....|.... . .+.|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence 5788999999999999999999999999999999999987777655444322 2 4789999999999863
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.68 E-value=9.9e-18 Score=123.07 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=62.8
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (178)
+.+.++||+|.... .......+|++++|+|+++++....+.. .+ -+.|.++|+||+|+....... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 46789999996321 2345678999999999987543222211 11 245779999999986422110 111
Q ss_pred HHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 139 ELYAQ----------ENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 139 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..+.. .++.+++.+||++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12211 22468899999999999999999988654
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=2.8e-17 Score=127.01 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=80.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEEEEEEeC------Ce---------------------
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLN------EV--------------------- 57 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~------~~--------------------- 57 (178)
....+|+|+|.+|+|||||+|+|++..+. ....+++. .......-+ +.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 45789999999999999999999998763 11222221 111000000 00
Q ss_pred ---E---------EEEEEEeCCCchh-----------hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC
Q 030364 58 ---T---------IKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP 114 (178)
Q Consensus 58 ---~---------~~~~i~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 114 (178)
. ..+.||||||... +......++..+|++++|+|+++....+....++..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0 2578999999864 445556678899999999999875444444555554432 3
Q ss_pred CceEEEEEeCCCCccccc
Q 030364 115 NLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 115 ~~~~ivv~nK~D~~~~~~ 132 (178)
+.|+++|+||+|+....+
T Consensus 218 ~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGGEEEEEECGGGSCHHH
T ss_pred CCCEEEEEECCCccCHHH
Confidence 678999999999875443
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.66 E-value=1.1e-15 Score=112.62 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-------------------eEEEEEEEeCCCchh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-------------------VTIKFDIWDTAGQER 71 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~d~~g~~~ 71 (178)
++|+++|.||+|||||+|++++........+..+.........+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998652111111111111111112221 235688999999865
Q ss_pred hhc----c---chhhhcCCcEEEEEEECCC
Q 030364 72 YHS----L---APMYYRGAAAAVVVYDITS 94 (178)
Q Consensus 72 ~~~----~---~~~~~~~~d~~i~v~d~~~ 94 (178)
... + ....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 421 2 2234789999999999985
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=4.5e-15 Score=118.03 Aligned_cols=124 Identities=21% Similarity=0.153 Sum_probs=82.2
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCc--------CCCC--------ccCceeeeE--EEEEEEeC-----Ce
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--------FFDF--------QESTIGAAF--FTQVLSLN-----EV 57 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~--------~~~~--------~~~~~~~~~--~~~~~~~~-----~~ 57 (178)
|++..+-++..||+|+|+.++|||||..+|+... .... .+...+.+. ....+.+. ..
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 4444444567899999999999999999987421 1000 011111111 12222232 23
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 128 (178)
.+.++++||||+-+|.......++-+|++|+|+|+..+-.... ...++....+ +.|.++++||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH---TCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEcccccc
Confidence 5889999999999999999999999999999999997543333 2333444444 68899999999974
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-14 Score=107.08 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=97.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG 82 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~ 82 (178)
..+|+++|.||+|||||+|+|++........|.++.+.....+.+++. .++++|+||...-. ...-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 458999999999999999999987654444455666666677777774 56799999963211 112234678
Q ss_pred CcEEEEEEECCCHhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcc--------ccccCHHHHHHHHHHcCCeEEEE
Q 030364 83 AAAAVVVYDITSMDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEE--------KRKVKNEEGELYAQENGLSFLET 152 (178)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
+|++++|+|++++.. .......++... .....|.++++||.|... ......++...+...+.+.--++
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 999999999998643 222222333332 134677889999999642 12344455555555555533333
Q ss_pred eCCCCCCHHHHHHHH
Q 030364 153 SAKSAHNVNELFYEI 167 (178)
Q Consensus 153 Sa~~~~~i~~~~~~l 167 (178)
-...+...+++.+.+
T Consensus 228 ~~~~nv~eddl~d~~ 242 (376)
T 4a9a_A 228 AFRCDATVDDLIDVL 242 (376)
T ss_dssp EECSCCCHHHHHHHH
T ss_pred eecccCCHHHHHHHH
Confidence 333444555555433
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=2.7e-15 Score=105.97 Aligned_cols=111 Identities=15% Similarity=0.049 Sum_probs=68.5
Q ss_pred EEEEEEeCCCchhhhccch------hhhcCCcEEEEEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 59 IKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
+.+.+|||||......... ..+.. +++++++|+... ..+.....+... .....+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence 5788999999876543322 23456 889999987643 222222111111 11123678999999999865
Q ss_pred ccccCHHHH-----H----H-----------------HHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 130 KRKVKNEEG-----E----L-----------------YAQENG--LSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 130 ~~~~~~~~~-----~----~-----------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..+...... . . +.+.++ ++++++||+++.|+++++++|.+.+.
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 432110000 0 0 122333 48999999999999999999988764
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=2.1e-16 Score=115.79 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=64.8
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--H
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--E 136 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~ 136 (178)
+.+.+|||||...... .....+|++++|+|++..+.+..+.. .. .+.|.++|+||+|+.+...... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999754332 24689999999999986543221111 11 1356799999999865322111 1
Q ss_pred HHHHHHHH-------cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 137 EGELYAQE-------NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 137 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
+....... +..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 1457899999999999999999988664
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=1.8e-16 Score=124.59 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=80.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--cCCCC--------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDF--------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 73 (178)
..||+|+|+.++|||||..+|+.. ..... .+...+.+.......+....+.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999998742 11100 00011222222233334445678899999999999
Q ss_pred ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
......++-+|++|+|+|+.++-.... ...++....+ +.|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999997543332 3344555554 678899999999754
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=3.5e-15 Score=118.12 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=95.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceeee-----------------------------------------
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAA----------------------------------------- 46 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~~----------------------------------------- 46 (178)
...+|+|+|.+++|||||+|+|++..+.+.. ..++...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4679999999999999999999987652211 1111000
Q ss_pred ---------EEEEEEEeCCeEEEEEEEeCCCchh-------------hhccchhhh-cCCcEEEEEEECCCHhHHHHHHH
Q 030364 47 ---------FFTQVLSLNEVTIKFDIWDTAGQER-------------YHSLAPMYY-RGAAAAVVVYDITSMDSFERAKK 103 (178)
Q Consensus 47 ---------~~~~~~~~~~~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 103 (178)
.....+..++ ...+.|+||||... .......++ ..+|++++|+|+++.........
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0011111111 12467999999543 122233333 57899999999986432222222
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cC-CeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NG-LSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
++..+. ..+.|+++|+||+|+........... . .+. .+ .+++.+||++|.|++++++++.+.
T Consensus 209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il-~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVL-E-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHH-T-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHH-H-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 233332 34789999999999875443322111 1 111 12 367889999999999999998863
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=9.9e-15 Score=105.17 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=81.1
Q ss_pred chhhhccchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHcC
Q 030364 69 QERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENG 146 (178)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 146 (178)
++.+..+...+++++|++++|+|+++++ ++..+..|+..+.. .+.|+++|+||+|+.+..++. .++...+.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4566777788999999999999999986 88888888886654 478999999999997544322 234455666778
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 147 LSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 147 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
++++++||++|.|++++++.+...+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~i~ 168 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGFIC 168 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTCEE
T ss_pred CeEEEEECCCCCCHHHHHhhccCcEE
Confidence 99999999999999999998876544
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=100.09 Aligned_cols=106 Identities=6% Similarity=-0.118 Sum_probs=70.2
Q ss_pred CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHH---H-HhC-CCCceEEEEEeCC-CCccccccCHHHHHH
Q 030364 67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL---Q-RQG-NPNLIMFLVANKV-DLEEKRKVKNEEGEL 140 (178)
Q Consensus 67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~-~~~-~~~~~~ivv~nK~-D~~~~~~~~~~~~~~ 140 (178)
+|+...+..|.+|+.++|++|||+|.+|++-++ .+..+..+ . ... ..+.|++|++||. |++.+ ....+...
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 378889999999999999999999999875443 33333222 2 221 3688999999995 67543 23333222
Q ss_pred HHH----HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 141 YAQ----ENGLSFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
... .+.+.+..|||++|+|+.+.++||.+.+...+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 211 14578999999999999999999999987654
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=1.6e-14 Score=105.47 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=62.7
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (178)
+.+.|+||+|..... ......+|.+++++|+...+....+... +. +.+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 567899999974321 2345789999999998754322111111 11 234577789999643222111122
Q ss_pred HHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 139 ELYAQE----------NGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 139 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..+... +..+++.+||+++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 2457899999999999999999988654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.45 E-value=8.5e-14 Score=102.97 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=50.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH 73 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~ 73 (178)
..++|+++|.+|+|||||+|+|++........|..+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4679999999999999999999987653333333333333334444432 2358899999986544
Q ss_pred c-------cchhhhcCCcEEEEEEECCCHh
Q 030364 74 S-------LAPMYYRGAAAAVVVYDITSMD 96 (178)
Q Consensus 74 ~-------~~~~~~~~~d~~i~v~d~~~~~ 96 (178)
. .+..+++.+|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456788999999999998643
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.44 E-value=9.8e-14 Score=97.68 Aligned_cols=108 Identities=6% Similarity=-0.133 Sum_probs=74.1
Q ss_pred CCCchhhhccchhhhcCCcEEEEEEECCCHhHHH---HHHHHHHHHHHhC-CCCceEEEEEeC-CCCccccccCHHHHHH
Q 030364 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE---RAKKWVQELQRQG-NPNLIMFLVANK-VDLEEKRKVKNEEGEL 140 (178)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~~ 140 (178)
.+|+...+..|.+|+.++|++|||+|.+|++-++ ++..+...+.... ..+.|++|++|| .|++.+. ...+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--s~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--CHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--CHHHHHH
Confidence 4577888999999999999999999999876443 2222222232221 368999999996 6876533 3333222
Q ss_pred HHH----HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364 141 YAQ----ENGLSFLETSAKSAHNVNELFYEIGDCTECFS 175 (178)
Q Consensus 141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 175 (178)
... ...+.+..|||++|+|+.+.++||.+.+...+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 211 14568999999999999999999999987654
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=3.9e-12 Score=94.27 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=57.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY 72 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 72 (178)
...++.++|++|+|||||+|.|++... .....|..+.......+.+++. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999998665 3333333333333334444431 135789999995322
Q ss_pred -------hccchhhhcCCcEEEEEEECCC
Q 030364 73 -------HSLAPMYYRGAAAAVVVYDITS 94 (178)
Q Consensus 73 -------~~~~~~~~~~~d~~i~v~d~~~ 94 (178)
.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1123445688999999999863
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.14 E-value=6.3e-12 Score=92.92 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=82.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc----CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----c---chh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----L---APM 78 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~ 78 (178)
..+|+++|.+|+|||||+|+|++.. .........+++.......++.. +.++||||...... + ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3579999999999999999999751 11111222233333444444442 67999999632221 1 111
Q ss_pred hh---cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364 79 YY---RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (178)
Q Consensus 79 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
.+ +..+.++++++......+..+. .+......+.|+++++||.|..+..... .....+.+..+..+...++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCch
Confidence 22 6678999999984321111110 0111223578999999999987655443 34445556666666555554
Q ss_pred CCCCH
Q 030364 156 SAHNV 160 (178)
Q Consensus 156 ~~~~i 160 (178)
...++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 44433
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=3.1e-10 Score=83.82 Aligned_cols=97 Identities=26% Similarity=0.308 Sum_probs=72.5
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHH
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ 143 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~ 143 (178)
..+.|......+.+.++++++|+|+++++ ..|...+.+. ..+.|+++|+||+|+.... ...+.... +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF-VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH-SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH-hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788888889999999999999999864 3344455544 2478999999999986533 22233333 355
Q ss_pred HcCC---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364 144 ENGL---SFLETSAKSAHNVNELFYEIGDCT 171 (178)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~i 171 (178)
..++ +++.+||++|.|+++++++|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 899999999999999999997644
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.10 E-value=3e-10 Score=86.78 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=84.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH------hCcCC----CCccCce-----------eeeEEEEEEE-------------e
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFV------KGQFF----DFQESTI-----------GAAFFTQVLS-------------L 54 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~ 54 (178)
+...|+++|.+|+||||+++.|. +.+.. ..+.+.. +.+....... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210 0001100 0111110000 0
Q ss_pred CCeEEEEEEEeCCCchhhhc-cc---hhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 030364 55 NEVTIKFDIWDTAGQERYHS-LA---PMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDL 127 (178)
Q Consensus 55 ~~~~~~~~i~d~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~ 127 (178)
....+.+.|+||||...... .. ... ...+|.+++|+|+....... .....+.. ..|+ .+|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 00235788999999743211 11 111 23789999999998754311 12222322 1454 889999997
Q ss_pred ccccccCHHHHHHHHHHcCCeE------------------EEEeCCCCCC-HHHHHHHHHhh
Q 030364 128 EEKRKVKNEEGELYAQENGLSF------------------LETSAKSAHN-VNELFYEIGDC 170 (178)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 170 (178)
..... .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53211 1122223344443 3468999999 99999999865
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=4.3e-12 Score=93.74 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCC-----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----cchh--
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LAPM-- 78 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~~~-- 78 (178)
..+|+++|.+|+|||||+|+|++.... ....+..+++.......++.. +.++||||...... +...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 358999999999999999999986321 112333344444444444443 67999999643221 1111
Q ss_pred --h--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEe
Q 030364 79 --Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 79 --~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
+ ....+.++++++......+..+. .+......+.|+++++||+|..+.... ......+.+..+..+.+.+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 1 25678888888874211111110 011112347899999999998765443 2333445555555444433
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=4.3e-10 Score=84.00 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=69.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------------
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------------- 72 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------------- 72 (178)
.++++|+|++|+|||||++.|.+..+.... .+..............+-...+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 457999999999999999999986542211 111111111111122222346789999875321
Q ss_pred -hccchh-------------hhcCC--cE-EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH
Q 030364 73 -HSLAPM-------------YYRGA--AA-AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135 (178)
Q Consensus 73 -~~~~~~-------------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 135 (178)
...+.. ....+ |+ +.++.|...+-+... +..+... ..+.|+++|.||+|...+.++..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence 000101 11122 23 555566654332222 1222222 25789999999999765443321
Q ss_pred H--HHHHHHHHcCCeEEEEeC
Q 030364 136 E--EGELYAQENGLSFLETSA 154 (178)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~Sa 154 (178)
. ....-....+++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 1 112112345677777774
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.01 E-value=8.1e-10 Score=78.26 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc---------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------ 74 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------ 74 (178)
.++++++|++|+|||||++.|++......- ..+...........-.+-...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 578999999999999999999974332110 00000010011111111123578999997421100
Q ss_pred ------------c----------chhhhcCCcEEEEEEECC-CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364 75 ------------L----------APMYYRGAAAAVVVYDIT-SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (178)
Q Consensus 75 ------------~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 131 (178)
. ....+..+++.++++|.. .+-.... ...+..+.. . .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 0 011123357888888855 2211111 222333322 2 7899999999976543
Q ss_pred ccCH--HHHHHHHHHcCCeEEE
Q 030364 132 KVKN--EEGELYAQENGLSFLE 151 (178)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~ 151 (178)
+... .........+++++++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 3221 1222234456666654
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.00 E-value=1.1e-08 Score=76.44 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-eeeE--EEEEEEeCCeEEEEEEEeCCCchhhhccchhh-----hc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-GAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY-----YR 81 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-----~~ 81 (178)
...++++|++|+|||||+|.+.+-.....-.-.. +.+. ......... .-.+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4489999999999999999999743221111111 1110 011111111 1146799999864221111111 23
Q ss_pred CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------ccccCHHH----HHHHH----HHcC
Q 030364 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEE----GELYA----QENG 146 (178)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------~~~~~~~~----~~~~~----~~~~ 146 (178)
..+..++ ++..... ..-..+...+.. .+.|+++|.||.|+.- -......+ ...+. ...+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455554 7776311 111122233333 2679999999999631 11112222 22222 1222
Q ss_pred ---CeEEEEeC--CCCCCHHHHHHHHHhhccc
Q 030364 147 ---LSFLETSA--KSAHNVNELFYEIGDCTEC 173 (178)
Q Consensus 147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~i~~ 173 (178)
..++.+|+ ..+.|++++.+.|.+.+..
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 36788999 5666799999999887754
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.98 E-value=7.3e-10 Score=78.99 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=68.9
Q ss_pred EEeCCCch-hhhccchhhhcCCcEEEEEEECCCHhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH
Q 030364 63 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 139 (178)
Q Consensus 63 i~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 139 (178)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34578875 44555667789999999999999987654 233332 4789999999999975321 12223
Q ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 140 LYAQENGLSFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
.+.+..+++++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 344445789999999999999999998877654
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=6.4e-10 Score=82.21 Aligned_cols=98 Identities=23% Similarity=0.260 Sum_probs=70.9
Q ss_pred CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHH
Q 030364 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ 143 (178)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~ 143 (178)
.++.|......++..++++++|+|++++++ .|...+.+. ..+.|+++|+||+|+.... ...+.... ..+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888888888899999999999999763 233333333 2478999999999986532 22233333 345
Q ss_pred HcCC---eEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364 144 ENGL---SFLETSAKSAHNVNELFYEIGDCTE 172 (178)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~i~ 172 (178)
..++ +++.+||++|.|++++++.|.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5666 7899999999999999999976543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=4.8e-09 Score=74.76 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=36.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 70 (178)
...++++++|.||+|||||+|+|.+..... ..+..+++.....+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 457899999999999999999999765322 223333333222233332 46799999963
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=3.4e-09 Score=74.77 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 71 (178)
++++++|.+|+|||||+|+|.+..... ..++.+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999766532 233333333222223222 467999999743
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.58 E-value=1.5e-07 Score=70.70 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=53.3
Q ss_pred EEEEEEeCCCchhhhc-----cc-hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 59 IKFDIWDTAGQERYHS-----LA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
+.+.|+||+|...... +. ......+|.+++|+|+........ ....+... -.+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence 6778999999532111 11 112345789999999987543322 22333322 2345789999997532
Q ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 133 VKNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.-.........+.|+..++. |++++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 12334444567888877775 55543
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=4.5e-08 Score=69.02 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCchh-hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364 66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144 (178)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (178)
.||+.. ........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+... .+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 466642 2234456789999999999999876654310 01 1 1 789999999999975322 1222334445
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364 145 NGLSFLETSAKSAHNVNELFYEIGDC 170 (178)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (178)
.+.++ .+||+++.|+++++++|.+.
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999999877654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=6.4e-08 Score=72.85 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCchhhhc-----cc-hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCcc
Q 030364 58 TIKFDIWDTAGQERYHS-----LA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-I-MFLVANKVDLEE 129 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~D~~~ 129 (178)
.+.+.++||||...... +. ...+..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 35678999999643211 10 111236899999999876532 111222222 234 5 789999999743
Q ss_pred ccccCHHHHHHHHHHcCCeEEEE
Q 030364 130 KRKVKNEEGELYAQENGLSFLET 152 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
. ...........+.|+..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122333555566665544
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=2e-07 Score=72.53 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=39.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-eeeEEEEEE--Ee-CCeEEEEEEEeCCCchh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-GAAFFTQVL--SL-NEVTIKFDIWDTAGQER 71 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~d~~g~~~ 71 (178)
..+..+|+|+|.||+|||||+|+|++....-....+. +.+...... .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3467899999999999999999999875321111111 111111111 11 11234577999999643
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.36 E-value=4.4e-08 Score=74.66 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=63.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--hhccc--------h
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLA--------P 77 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~--------~ 77 (178)
...+.|+++|.+|+||||+.++|....... ..++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999987542211 111111000000000011112335789888732 22222 4
Q ss_pred hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
.++...++.++|+|.++. ..+....|+..+... ..+++.+-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 566677889999999986 455556666666554 334444443333
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=9.1e-08 Score=71.83 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCchh--hhc----cch--hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364 58 TIKFDIWDTAGQER--YHS----LAP--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (178)
Q Consensus 58 ~~~~~i~d~~g~~~--~~~----~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 129 (178)
.+.+.++|+||... ... ... ......+.+++|+|+.......+ ....+... -.+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 35677999999643 111 111 11225689999999987543222 22333332 134688999999642
Q ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (178)
..-.........+.|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 122344455567899887775 6554
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.6e-07 Score=67.57 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=60.2
Q ss_pred cchhhhcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHcCCeEEE
Q 030364 75 LAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFLE 151 (178)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (178)
+....+.++|.+++|+|+.++.. ...+.+++.... ..++|.++|+||+|+.+..+. .........+..+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 34456889999999999997653 333443333222 347889999999999764320 012223333446789999
Q ss_pred EeCCCCCCHHHHHHHH
Q 030364 152 TSAKSAHNVNELFYEI 167 (178)
Q Consensus 152 ~Sa~~~~~i~~~~~~l 167 (178)
+||.++.|+++++..+
T Consensus 156 ~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHF 171 (307)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred EecCCCCCHHHHHhhc
Confidence 9999999988776543
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.30 E-value=1.3e-06 Score=62.70 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCchh--hhc-cch-----hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364 58 TIKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLE 128 (178)
Q Consensus 58 ~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~ 128 (178)
.+.+.++||||... ... ... .....+|.+++|+|+..... .....+.+.. ..| ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35678999999755 211 111 13457899999999875322 1222233322 244 67889999964
Q ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (178)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (178)
. ............+.|+..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 12234456667788887776 4555543
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.21 E-value=3.4e-06 Score=66.25 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998753
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.18 E-value=8.2e-06 Score=59.84 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=55.6
Q ss_pred hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHcCCeEEEEeCCC
Q 030364 79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKS 156 (178)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~ 156 (178)
...++|.+++|.+.. |. +...+.+++..... .+.|.++|+||+|+.+..... .+.........+++++.+||.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467899999886654 54 33334444433333 367789999999997543210 1111222335688999999999
Q ss_pred CCCHHHHHHHHH
Q 030364 157 AHNVNELFYEIG 168 (178)
Q Consensus 157 ~~~i~~~~~~l~ 168 (178)
+.|++++...+.
T Consensus 203 ~~gl~~L~~~~~ 214 (358)
T 2rcn_A 203 QDGLKPLEEALT 214 (358)
T ss_dssp TBTHHHHHHHHT
T ss_pred CcCHHHHHHhcC
Confidence 999999887653
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.95 E-value=1.5e-05 Score=60.14 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..+..-|.|+|++++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345677899999999999999999863
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=7.8e-06 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.78 E-value=1.7e-05 Score=52.85 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 33557999999999999999999864
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.75 E-value=3.3e-06 Score=56.32 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=2e-05 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.--++++|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.72 E-value=6.7e-05 Score=50.48 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=47.3
Q ss_pred EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCc
Q 030364 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLE 128 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~ 128 (178)
+.+.++|+|+.. .......+..+|.++++...+... ..+...++.+.... .++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 677899999864 334455677799999999887644 56666666666543 3466789999999853
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=2.4e-05 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++|+|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999876
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.68 E-value=3.1e-05 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.63 E-value=3.4e-05 Score=51.91 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999998864
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=3.5e-05 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
++++|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=5.2e-05 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+.--|+++|++|+|||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4556889999999999999999864
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.61 E-value=3.8e-05 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
--++++|++|||||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999998864
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.60 E-value=0.00014 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 43
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.59 E-value=3.1e-05 Score=50.87 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 030364 12 KLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~ 31 (178)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999754
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.59 E-value=4.1e-05 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.--++|+|++|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999998743
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.58 E-value=4.8e-05 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+...|+|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 250
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=1.6e-05 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.-.++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3478999999999999999998643
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.56 E-value=4.8e-05 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.++|+|++|||||||++.+.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998874
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.54 E-value=8.6e-05 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.52 E-value=6.3e-05 Score=48.81 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.-.++++|+.|+|||||++.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468899999999999999998754
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.52 E-value=0.00043 Score=52.19 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=44.8
Q ss_pred EEEEEEEeCCCchhhhc-cch-----hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030364 58 TIKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~ 130 (178)
.+.+.|+||||...... ... .....++.+++|+|+...... ......+.. ..+ ..+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35778999999643321 111 123468899999998864322 122233322 123 3578999996421
Q ss_pred cccCHHHHHHHHHHcCCeEEE
Q 030364 131 RKVKNEEGELYAQENGLSFLE 151 (178)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ 151 (178)
. ..........+.|+..
T Consensus 256 ~----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKF 272 (433)
T ss_dssp C----THHHHHHHHHCCCEEE
T ss_pred H----HHHHHHHHHHCCCeEE
Confidence 1 1233444455655433
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=6.2e-05 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
..-|+++|++||||||+++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468899999999999999998653
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.51 E-value=6.8e-05 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...|+++|++|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998876
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.51 E-value=6.4e-05 Score=49.06 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030364 11 VKLVLLGDMGTGKTSLVLRF 30 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l 30 (178)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.50 E-value=6.9e-05 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=6.8e-05 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.50 E-value=5.4e-05 Score=52.38 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988763
No 261
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.49 E-value=7.4e-05 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.48 E-value=0.0011 Score=44.95 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=53.7
Q ss_pred EEEEEEEeCCCc-hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-ccccCH
Q 030364 58 TIKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-KRKVKN 135 (178)
Q Consensus 58 ~~~~~i~d~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-~~~~~~ 135 (178)
.+.+.++|+|+. .. ......+..+|.+|++...+ ..+...+...++.+.... +.++.+|+|+.|... .. .
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~~---~ 138 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSKD---G 138 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSCH---H
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccchH---H
Confidence 366789999876 32 23345677899999988876 355666666666666532 456889999998543 11 2
Q ss_pred HHHHHHHHHcCCeEE
Q 030364 136 EEGELYAQENGLSFL 150 (178)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (178)
.+..+..+..+.+++
T Consensus 139 ~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 139 DEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHcCCchh
Confidence 333334444555444
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.47 E-value=8.3e-05 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
|+|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.47 E-value=7.7e-05 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.46 E-value=8.7e-05 Score=48.39 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=9.4e-05 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999988643
No 267
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.45 E-value=0.00011 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+..+|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988754
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.45 E-value=8.1e-05 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=8.3e-05 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..-|+++|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 446899999999999999998753
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.43 E-value=6.7e-05 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.43 E-value=0.00011 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.41 E-value=8.7e-05 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.41 E-value=0.00011 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
...|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.41 E-value=9.7e-05 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF 35 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~ 35 (178)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.40 E-value=9.9e-05 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988763
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.40 E-value=8.6e-05 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.39 E-value=8.8e-05 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.39 E-value=0.00012 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.|++.|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999998875
No 279
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.39 E-value=0.00014 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999864
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.39 E-value=0.00011 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998763
No 282
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.38 E-value=0.00016 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+.|+++|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998865
No 283
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.37 E-value=9.4e-05 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.37 E-value=0.00011 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.=.++|+|++||||||+++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999876
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=0.00012 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 286
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.37 E-value=0.00011 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.37 E-value=9.5e-05 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 288
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.36 E-value=0.00012 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.36 E-value=0.00012 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 290
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.00013 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.36 E-value=0.0001 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999998764
No 292
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.36 E-value=0.00011 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998764
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.35 E-value=0.00014 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|++.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.35 E-value=0.00011 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.00015 Score=48.70 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.35 E-value=0.00012 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.34 E-value=0.00011 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00016 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.34 E-value=0.00011 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998764
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.34 E-value=0.00013 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 301
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00012 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.33 E-value=0.00014 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++|+|++|+|||||++.|.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 44789999999999999999875
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.33 E-value=0.00015 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00024 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
....|++.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 305
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.33 E-value=0.00019 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.++|+++|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999864
No 306
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.33 E-value=0.00023 Score=48.61 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 030364 13 LVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~ 32 (178)
|+++|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998875
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00016 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.33 E-value=9.9e-05 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 309
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.33 E-value=0.00017 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 310
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.32 E-value=0.00019 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...|+++|++||||||+.+.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.32 E-value=0.00017 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.31 E-value=0.00014 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998864
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.31 E-value=0.00014 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998864
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.30 E-value=0.00027 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999998865
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.0002 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 316
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.29 E-value=0.0076 Score=43.11 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEE-EEEeCCCCccccccCH
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMF-LVANKVDLEEKRKVKN 135 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i-vv~nK~D~~~~~~~~~ 135 (178)
.+.+.++|+|+..... .....+..+|.++++...+ ..+...+...++.+.... ..+.+++ +|.|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 4678899998753221 2234567899999998765 456666766667766532 2455644 889999832
Q ss_pred HHHHHHHHHcCCeEEE
Q 030364 136 EEGELYAQENGLSFLE 151 (178)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (178)
.....+.+..+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 2344555566766654
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.29 E-value=0.00016 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 318
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.29 E-value=0.00015 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++|+|++|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.28 E-value=0.00014 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.28 E-value=0.00014 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998764
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.28 E-value=0.00024 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|+|+|++||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998763
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.26 E-value=0.00025 Score=51.19 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999998876
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.26 E-value=0.00018 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 030364 11 VKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~ 31 (178)
--++++|++|||||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999887
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.26 E-value=0.00024 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00024 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 327
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.25 E-value=0.0011 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 328
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00017 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
--++++|++|+|||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999864
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.25 E-value=0.00018 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988643
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.24 E-value=0.00021 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999864
No 331
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.24 E-value=0.00015 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 367899999999999999998754
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.23 E-value=0.00023 Score=47.00 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 333
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.23 E-value=0.00011 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFV-KG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~-~~ 33 (178)
--++++|++||||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368899999999999999998 53
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.23 E-value=0.00023 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 335
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.22 E-value=0.00064 Score=43.13 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999987654
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.22 E-value=0.00027 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+.|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.22 E-value=0.00021 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.22 E-value=0.00027 Score=49.09 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|.|+|++|||||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.20 E-value=0.00034 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00028 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...-|+++|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999874
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00027 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.19 E-value=0.00027 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.|++.|.+||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=0.0003 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..++|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.19 E-value=0.00019 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998864
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.17 E-value=0.00023 Score=52.24 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.++|+|++||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 346
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.17 E-value=0.00034 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.17 E-value=0.00024 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 348
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.16 E-value=0.00022 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988743
No 349
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.16 E-value=0.00041 Score=49.51 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+...|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988764
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.15 E-value=0.00026 Score=50.08 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 030364 13 LVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~ 32 (178)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999886
No 351
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.15 E-value=0.0003 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.15 E-value=0.00034 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999998764
No 353
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.15 E-value=0.00023 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.14 E-value=0.00027 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57899999999999999988643
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.14 E-value=0.00047 Score=49.88 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+-|.|+|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999999998754
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.14 E-value=0.00027 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988643
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.14 E-value=0.00037 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.....|.|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.14 E-value=0.00032 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999874
No 359
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0011 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.7
Q ss_pred eeEEEEE--cCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLL--GDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~--G~~~~GKStl~~~l~~~ 33 (178)
+=||+|+ |+++.||++|++++++.
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CCceEEEecCcccccHHHHHHHHhcc
Confidence 3356666 99999999999999975
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00042 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.....|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 361
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.13 E-value=0.00028 Score=49.30 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999865
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.12 E-value=0.00028 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999998874
No 363
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.12 E-value=0.00016 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
=.++|+|++|||||||++.+.+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3689999999999999998875
No 364
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.0003 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999988743
No 365
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.11 E-value=0.0003 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999988743
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00013 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998763
No 367
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.11 E-value=0.00033 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998863
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.10 E-value=0.00037 Score=46.40 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.10 E-value=0.00044 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999999875
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00022 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.09 E-value=0.00034 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.09 E-value=0.00042 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.0002 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-.++++|++|+|||||++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998863
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.09 E-value=0.00036 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...|+++|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.09 E-value=0.00032 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988643
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.09 E-value=0.0004 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.08 E-value=0.00033 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999998874
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.08 E-value=0.00049 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999998875
No 379
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.07 E-value=0.00034 Score=46.23 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998865
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.05 E-value=0.0004 Score=45.28 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00038 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.--++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.05 E-value=0.00039 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++|+|++||||||+++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999886
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.00048 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.03 E-value=0.00034 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-.++|+|++|||||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999863
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.02 E-value=0.0004 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
=.++|+|++||||||+++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998864
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.01 E-value=0.00061 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.00 E-value=0.00031 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-.++|+|++|||||||++.+.+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998864
No 388
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.00 E-value=0.00064 Score=48.81 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=21.1
Q ss_pred CcccCCCCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
|..+.......-|+|+|++|||||+|...|..
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence 33333333345678899999999999999875
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.00 E-value=0.00063 Score=49.40 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=49.8
Q ss_pred EEEEEeCCCchhhhccch------hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364 60 KFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (178)
Q Consensus 60 ~~~i~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (178)
.+.++|++|......... ...-..|-.+++.|+.... .+......+.... ...++++||.|... .
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a-~-- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA-R-- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS-C--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc-c--
Confidence 345799998633222110 1122478889999987653 2223334444321 12378899999522 1
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364 134 KNEEGELYAQENGLSFLETSAKSAHNVN 161 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (178)
.-.........+.|+..++ +|++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 1234455566788887777 555543
No 390
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.99 E-value=0.003 Score=46.03 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 030364 13 LVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~ 32 (178)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.99 E-value=0.00026 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999988643
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.99 E-value=0.00059 Score=44.35 Aligned_cols=21 Identities=48% Similarity=0.672 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998865
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.99 E-value=0.00049 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999999988764
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.00049 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998863
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.96 E-value=0.00064 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 396
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.96 E-value=0.00059 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.96 E-value=0.0005 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.95 E-value=0.00045 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.800 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.++++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 588999999999999999886
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.95 E-value=0.00055 Score=46.71 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
--++++|++|+|||||++.+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788999999999999998853
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00073 Score=47.95 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.94 E-value=0.00054 Score=45.11 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-.+|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.94 E-value=0.00077 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...|+++|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999998864
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.93 E-value=0.0002 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999864
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.93 E-value=0.00088 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+..-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.93 E-value=0.00068 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 406
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00046 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.++|+|++|||||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 447899999999999999998874
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.00047 Score=53.07 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..++|+|++||||||+++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999998863
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.88 E-value=0.00026 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988643
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00064 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999999876
No 410
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.00071 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 411
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00096 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+.|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998875
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.85 E-value=0.00068 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.84 E-value=0.00071 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.--++|+|++||||||+++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45789999999999999999875
No 414
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.84 E-value=0.00059 Score=44.72 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.83 E-value=0.00068 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.82 E-value=0.00088 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.+++.|++|+|||++++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.82 E-value=0.00079 Score=43.10 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 030364 13 LVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~ 31 (178)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 418
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.81 E-value=0.001 Score=45.86 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+...|.++|.+||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998875
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.80 E-value=0.00096 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988753
No 420
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.80 E-value=0.0045 Score=45.59 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~ 31 (178)
.+ .+|+|++|+|||||++.++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 44 5589999999999999876
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.00092 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 33589999999999999999986
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.77 E-value=0.00055 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
--++|+|..|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356788999999999999999753
No 423
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.77 E-value=0.00089 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
=++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 424
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.00094 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
--++++|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999874
No 425
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.76 E-value=0.0011 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 426
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.75 E-value=0.0054 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998653
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.75 E-value=0.00097 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.=.++++|++|+|||||++.+.+-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998743
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.74 E-value=0.0013 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.73 E-value=0.0012 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+++.++|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 478999999999999999998865
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.72 E-value=0.001 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999886
No 431
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.68 E-value=0.0015 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998753
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.68 E-value=0.0014 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=20.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999986654
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.67 E-value=0.0014 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999885
No 434
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.0014 Score=41.59 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 435
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.66 E-value=0.0085 Score=41.88 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=45.2
Q ss_pred EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
.+.+.++|+|+.. .......+..+|.+|++...+. .+...+....+.+... ..+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-hccCCEEEEEeccc
Confidence 3667899998753 2334556677999999999864 4566666666666554 34567789999984
No 436
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.66 E-value=0.0049 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHH
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~ 31 (178)
..+..-|.|+|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456677899999999999999665
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0016 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998753
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.61 E-value=0.0019 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.60 E-value=0.0013 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
=+++++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998754
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0013 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.=.++++|++|+|||||++.+.+-.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 441
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.58 E-value=0.0016 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58 E-value=0.0015 Score=44.55 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.58 E-value=0.0012 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998763
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.57 E-value=0.0019 Score=44.96 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.57 E-value=0.0014 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998863
No 446
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.57 E-value=0.0024 Score=44.89 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 8 ~~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+...+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44678999999999999999998763
No 447
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.55 E-value=0.0024 Score=45.60 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999988763
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.55 E-value=0.0014 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0019 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+.=-++++|++|+|||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3446889999999999999998874
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.54 E-value=0.0014 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.+++.|+||+|||+++..+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999888765
No 451
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.52 E-value=0.0019 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456999999999999999998753
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.52 E-value=0.0017 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++|+|++|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.51 E-value=0.0025 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..-|+++|.+||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999999875
No 454
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.50 E-value=0.0021 Score=43.12 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 455
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.50 E-value=0.0017 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999998875
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.50 E-value=0.0016 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.=.++++|++|+|||||++.+.+-.
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468999999999999999988743
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.0028 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999987765
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.47 E-value=0.0019 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0016 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCc
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~ 34 (178)
.++++|++|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 460
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.40 E-value=0.002 Score=46.08 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=45.5
Q ss_pred EEEEEEeCCCchhhhc--c--chhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364 59 IKFDIWDTAGQERYHS--L--APMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 132 (178)
+.+.++||+|...... + ....+. ..+..++|+|++.. ...+..+.+.+.. . + ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l-~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--V-P-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--S-C-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--C-C-CCEEEEeCCCcccc--
Confidence 5678999999653321 1 111222 36778899987753 2223333222221 1 1 13466799996432
Q ss_pred cCHHHHHHHHHHcCCeEEEEe
Q 030364 133 VKNEEGELYAQENGLSFLETS 153 (178)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (178)
...........++|+..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 1244556666787765543
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.38 E-value=0.0014 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.+.|++.|.+||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 462
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.38 E-value=0.0012 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998763
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.37 E-value=0.0024 Score=45.91 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=46.7
Q ss_pred EEEEEEeCCCchhhhc--------cchh----hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364 59 IKFDIWDTAGQERYHS--------LAPM----YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (178)
Q Consensus 59 ~~~~i~d~~g~~~~~~--------~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 126 (178)
+.+.++|+||...... .... .-..++.+++|+|+.... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 4577999999622111 0000 112478899999987432 22221 23333221 1 2366789999
Q ss_pred CccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364 127 LEEKRKVKNEEGELYAQENGLSFLETSA 154 (178)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
... . --.........+.|+..+..
T Consensus 261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA--K--GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence 532 1 12355666677888777653
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0021 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999875
No 465
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.35 E-value=0.0014 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
=.++++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999988753
No 466
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.35 E-value=0.0035 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+...+++.|+||+|||++++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999999875
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0023 Score=44.05 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0023 Score=50.34 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCc
Q 030364 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~~ 34 (178)
++++|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998754
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.34 E-value=0.0024 Score=42.89 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
...|+++|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998754
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.33 E-value=0.0022 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.--+.|+|++|+|||||+..+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999998864
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.33 E-value=0.0027 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.33 E-value=0.0026 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.0028 Score=42.72 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 030364 13 LVLLGDMGTGKTSLVLRFV 31 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~ 31 (178)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999764
No 474
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0031 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|++.|+||+|||++++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999998863
No 475
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.31 E-value=0.0012 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
=.++++|++|+|||||++.+.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3789999999999999998775
No 476
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.29 E-value=0.0031 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCcC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKGQF 35 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~~~ 35 (178)
.++++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999997654
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.26 E-value=0.0033 Score=45.49 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999998753
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.26 E-value=0.0016 Score=51.04 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 030364 12 KLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~ 32 (178)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999998875
No 479
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0028 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 480
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0036 Score=47.09 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..-|++.|+||+|||++++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0036 Score=43.18 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998753
No 482
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.24 E-value=0.0031 Score=41.66 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 030364 13 LVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 13 i~v~G~~~~GKStl~~~l~~~ 33 (178)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998754
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.23 E-value=0.0032 Score=42.66 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.|++.|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0038 Score=47.04 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+..-|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998763
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.19 E-value=0.0036 Score=44.98 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
...+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.19 E-value=0.0019 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|+++|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999998753
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.16 E-value=0.005 Score=42.13 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 7 ~~~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
..+..-|++.|.+||||||+++.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999999998864
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.15 E-value=0.0048 Score=41.90 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
+.+-|++.|.+||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356788999999999999998864
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0036 Score=45.50 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.13 E-value=0.0015 Score=45.75 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998763
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.12 E-value=0.0039 Score=40.88 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 030364 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 11 ~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-|++.|++|+||||+.-.|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998864
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0031 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.11 E-value=0.0017 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998764
No 494
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.11 E-value=0.0051 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...+++.|+||+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998753
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.09 E-value=0.0043 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.07 E-value=0.0038 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.06 E-value=0.004 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
.-.+++.|++|+|||++++.+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 498
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0043 Score=46.22 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 9 ~~~~i~v~G~~~~GKStl~~~l~~~ 33 (178)
+...|++.|+||+|||.|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998763
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.06 E-value=0.0039 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 030364 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (178)
Q Consensus 10 ~~~i~v~G~~~~GKStl~~~l~~ 32 (178)
.-.+++.|++|+|||||++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.06 E-value=0.0046 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 030364 12 KLVLLGDMGTGKTSLVLRFVKG 33 (178)
Q Consensus 12 ~i~v~G~~~~GKStl~~~l~~~ 33 (178)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5788999999999999998753
Done!