BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030366
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 21/198 (10%)
Query: 1 MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVL-------------- 46
+G ++ S PL + ++G AYSI+LP LLRWK L+AA +L
Sbjct: 197 LGWIVGSWPLFWALFVSFMLGTAYSINLP-LLRWKRFALVAAMCILAVRAIIVQIAFYLH 255
Query: 47 ------GNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
G P+ FT+P++F A++ ++ IA KDIPD+EGDK FG+R+ + +G+++VF
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315
Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
V ++ MAY +LVGA SP + K+++++ H LA LW +AK+ D S S Y
Sbjct: 316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375
Query: 161 MLTWKLYCVEFFLLHFVR 178
M WKL+ E+ LL F++
Sbjct: 376 MFIWKLFYAEYLLLPFLK 393
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 4 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--------------------K 43
++ S PL I C+V AY++DLP LLRWK P++ A
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLP-LLRWKKYPVLTAINFIADVAVTRSLGFFLHMQT 275
Query: 44 IVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
V P F +P++F A + I+ IA KDIPD+EGD+ FG+++L + +G ++VF +
Sbjct: 276 CVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWIC 335
Query: 104 VNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLT 163
V+++ M YG +LVGA SP + K++T++ H+ LA VLW AK+ D + N SFYM
Sbjct: 336 VSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFI 395
Query: 164 WKLYCVEFFLLHFVR 178
WKL+ E+FL+ R
Sbjct: 396 WKLHTAEYFLIPLFR 410
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 21/198 (10%)
Query: 1 MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLG------------- 47
+G + S PL + I I+G AYSI+LP LRWK + ++AA +L
Sbjct: 208 LGWAVGSQPLFLALFISFILGTAYSINLP-FLRWKRSAVVAALCILAVRAVIVQLAFFLH 266
Query: 48 -------NPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
P FT+P++F A++ ++ IA KDIPD+EGD+ FG+++ + +G++KVF
Sbjct: 267 IQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVF 326
Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
+ V ++ MAY +L+GA S + K T++ H+ LA +LW ++++ D + + SFY
Sbjct: 327 WICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFY 386
Query: 161 MLTWKLYCVEFFLLHFVR 178
M WKL+ E+ L+ VR
Sbjct: 387 MFIWKLFYAEYLLIPLVR 404
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--------------------KIVL 46
S PL+ ++ AYSID+P LLRWK P +AA +VL
Sbjct: 219 SWPLICNLVVIASSWTAYSIDVP-LLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVL 277
Query: 47 GNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNI 106
P+ F + + F A++ ++ +A KDIPDVEGDK G+ + + +G+++ F + V+
Sbjct: 278 KRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSF 337
Query: 107 MLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKL 166
MA+G +L GA K+ T + ++ LA +LW QAK+ D SD S SFYM WKL
Sbjct: 338 FEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKL 397
Query: 167 YCVEFFLLHFVR 178
FFL+ +R
Sbjct: 398 LYAGFFLMALIR 409
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 41 AAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
A + LG P ++ PV F +++ ++ IA KD+PDVEGD+ F + TL +G +
Sbjct: 248 ATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA 307
Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH----SALAFVLWRQAKTNDPSDNKSA 156
+ ++L+ Y + + + P V + + +H S L F W K N + S
Sbjct: 308 FLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISG 367
Query: 157 KSFYMLTWKLYCVEFFLLHFV 177
+Y W L+ E+ L F+
Sbjct: 368 --YYRFIWNLFYAEYLLFPFL 386
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 41 AAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
A + LG ++ PV F ++ ++ IA KD+PDVEGD+ + + TL +G +
Sbjct: 241 ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300
Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALA----FVLWRQAKTNDPSDNKSA 156
+ +++ Y + V P + V + H+ALA F W + D S
Sbjct: 301 FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAIS- 359
Query: 157 KSFYMLTWKLYCVEF 171
+Y W L+ E+
Sbjct: 360 -QYYRFIWNLFYAEY 373
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 60 AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
A YL I N + +KDI D+EGDKA G RTLPIIIG++K +A
Sbjct: 156 AGYLAICAFLVNVSREIMKDIEDIEGDKALGARTLPIIIGEKKAAIIA 203
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 35 KGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIII 94
G+ + +G F VLF A L I +KDI D++GD+ GL+TLPI+I
Sbjct: 145 TGSTFLFGAAAIGRITDFGVVVLFILAALATATREI--IKDIEDLDGDRKEGLQTLPIVI 202
Query: 95 GKEKVFSVAVNIMLMA 110
G + VA ++L+A
Sbjct: 203 GVTPAYRVATGVLLVA 218
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEK 98
VKD+ D++GD+A GLRTLPI+IG+ +
Sbjct: 174 VKDVEDIDGDRAEGLRTLPIVIGERR 199
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 60 AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVV 115
A YL I N + +KDI D EGDK G RTLPI+IGK+K I+ +G +
Sbjct: 156 AGYLAICAFLVNVSREIMKDIEDFEGDKRLGARTLPIMIGKKK-----SGIIASIFGFLT 210
Query: 116 LVGAFSP 122
++ +F P
Sbjct: 211 IISSFLP 217
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 61 AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
A+LV N A VKDI DVEGD G +TLPII+G+ K VA
Sbjct: 163 AFLV--NVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVA 203
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 60 AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
A YL I N A +KDI DVEGD A G +TLPII GK++ V V
Sbjct: 156 AGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGV 204
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 61 AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEK 98
A+LV N A +KDI D+EGD A G +TLPI+IG+++
Sbjct: 163 AFLV--NVAREVIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 60 AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEK 98
A YL I N + +KDI D+EGD G +TLPIIIGK +
Sbjct: 156 AGYLAICAFLVNVSREIMKDIEDIEGDMKMGAKTLPIIIGKRR 198
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
+KD+ D+ GD+A GLRTLP+++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
+KD+ D+ GD+A GLRTLP+++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
VKDI D+ GD A G +TLP IGK K F +A ++++A
Sbjct: 170 VKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 61 AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEK------VFSVA 103
A+LV N A KDI D+EGDKA G +TLPI+ G E +FSVA
Sbjct: 163 AFLV--NVAREIFKDIEDIEGDKAQGAKTLPIVWGIESSSKIGVIFSVA 209
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
VLF A L I TA VKDI D+EGD G TLP+ IG +K +AV L+A
Sbjct: 174 VLFLLAALAI--TAREIVKDIEDMEGDSLEGADTLPLRIGAKKAGYLAVLTGLLA 226
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
VKD+ D+ GDK G RTLPI+IG +K +A
Sbjct: 181 VKDVEDIVGDKKDGARTLPILIGAKKASYIA 211
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIML 108
+LF A W+ I +KD D++GDK+ G+ +LPI GK +F VA+ +L
Sbjct: 160 ILFLCALFATWSREI--IKDYEDLDGDKSEGVISLPIKYGKNSIF-VAIGFLL 209
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
+LF + L IW I VKD D+EGDK G+ +LPI GK+ ++
Sbjct: 163 ILFLCSLLSIWGREI--VKDFEDMEGDKKEGVISLPIKYGKKSLY 205
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 72 FVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
+KD+ DVEGD A GL+TLPI G+ VA
Sbjct: 168 ILKDLEDVEGDAALGLKTLPIAYGEGVALRVA 199
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
Y + A VKD+ DVEGD+A G TLPI G +A + ML+A
Sbjct: 157 YAFLMTMAREIVKDMEDVEGDRAEGATTLPITHGMRISGVLAASFMLIA 205
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 68 TAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
TA VKDI D+EGDK G TLP+ +G +K +A I +A
Sbjct: 184 TAREIVKDIEDMEGDKMEGADTLPLRVGAKKASYLAALIGFLA 226
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
+KDI D+EGDK TLPII G +K +AV
Sbjct: 168 IKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 69 AIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSV---AVNIMLMAYGGVVLVGAFSPSVL 125
IA V D VEGD+A GL++LP+ G E + A++I ++ G +L P
Sbjct: 279 GIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDITQLSVAGYLLASG-KPYYA 337
Query: 126 CKLVTMI 132
LV +I
Sbjct: 338 LALVALI 344
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 68 TAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
TA VKDI D+EGD+ TLP+ IG +K +AV I L+A
Sbjct: 184 TAREIVKDIEDMEGDRLEDADTLPLRIGAKKAGYLAVLIGLLA 226
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 60 AAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEK 98
AA + A +KD DV+GD A G RTLP+I+G K
Sbjct: 160 AAITFLATIARELLKDAEDVDGDAAGGARTLPMIVGVRK 198
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 69 AIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
I + D +EGD+ G+R+LP+++G E +A +M MA
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMA 231
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 20/100 (20%)
Query: 15 IIWCIVGGA---YSIDLPPLL----RWKGN----------PLMAAKIVLGNPVAFTKPVL 57
I + VGG+ Y PPL W GN P A + + G T ++
Sbjct: 200 IFYLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGT---LTPDIV 256
Query: 58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKE 97
+ I IA V D VEGD+A GL++LP+ G E
Sbjct: 257 VLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGME 296
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
+KD D+EGD+ G RTLP+ IG K +AV +L A
Sbjct: 173 LKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVIFVLFA 210
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 11 VIGFIIWCIVGG-----------------AYSIDLPPLLRWKGNPLMAAKIVLGNPVAFT 53
++GF+I C+V AY + PL+ M + F
Sbjct: 92 IVGFLISCLVDTWIPCTIVIFSDIILYLYAYKLKSTPLIGNLTVGFMTGLCFIFAGYTFN 151
Query: 54 KPVLFTAAYLV-----IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG 95
+ ++ +YL+ I TA KDI D+EGD A G +T PI+ G
Sbjct: 152 EGLIIYESYLLAFFALIMTTAREITKDIEDMEGDMAEGAKTFPILYG 198
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 55 PVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
P++ A + I + D +EGD+ G+++LP + G E +A +M +A
Sbjct: 180 PIVMMATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLA 235
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 12 IGFIIWCIVGGAYSIDLPPLLRW------KGNPLM----AAKIVLGNPVA--FTKPVLFT 59
+GFI + IV A+S+ RW GN L+ A ++ G+ A T V+
Sbjct: 101 LGFIEFLIVT-AFSLSWYAYARWLKRTGVPGNALVSLGVAFTLIFGSLAAGNLTNKVIIF 159
Query: 60 AAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVL 116
++ N FVK + D+ GD+A G+RT+ + IG ++ + + L++ VVL
Sbjct: 160 SSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIGVKR---TGILVFLLSLATVVL 213
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 40 MAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKV 99
+A+ +LGN F P + Y+ + + FVK I D+EGDK G+ TL + +G++
Sbjct: 147 LASGSLLGN---FIIPTI----YIFFFTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKST 199
Query: 100 FSVA 103
+ +A
Sbjct: 200 WIIA 203
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 69 AIAFVKDIPDVEGDKAFGLRTLPIIIGKE 97
IA V D +EGD+ GL++LP+ G E
Sbjct: 270 GIAIVNDFKSIEGDRTLGLQSLPVAFGME 298
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 73 VKDIPDVEGDKAFGLRTLPIIIGKEKV 99
+KD D+EGD+A G TL I IG K
Sbjct: 173 LKDAEDIEGDRAHGADTLAIRIGVRKT 199
>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 69 AIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAY---GGVVLVGAFSP 122
AI +I D+E DK G +TL I++G + ++ +AY G+V+ GA SP
Sbjct: 199 AINLSNNIRDIEEDKKGGRKTLAILMGHKGAVTLLAASFAVAYIWVVGLVITGAASP 255
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEK 98
Y+ + FVK I DV+GD G++TL + +G EK
Sbjct: 165 YIFFFTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEK 201
>sp|A6UQV8|DGGGP_METVS Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224)
GN=Mevan_0977 PE=3 SV=1
Length = 278
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 LFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
LF+ A +W I +KD D+EGD + +LPI G++ ++
Sbjct: 159 LFSCAMFSMWAREI--IKDYEDIEGDLKEKVSSLPIKYGEKSIY 200
>sp|O07753|Y1877_MYCTU Uncharacterized MFS-type transporter Rv1877/MT1926 OS=Mycobacterium
tuberculosis GN=Rv1877 PE=3 SV=1
Length = 687
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 26/117 (22%)
Query: 4 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTK--PVLFTAA 61
+L + +GF +W + G A + LPP R G+P+ A VL V F + F
Sbjct: 249 LLIGAAVALGFFVW-LEGRAAAAILPP--RLFGSPVFAVCCVLSFVVGFAMLGALTFVPI 305
Query: 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVG 118
YL + A A A GLRTLP++IG +++ + G VLVG
Sbjct: 306 YLGYVDGASA-----------TASGLRTLPMVIG----------LLIASTGTGVLVG 341
>sp|A6VHU1|DGGGP_METM7 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0950
PE=3 SV=1
Length = 278
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
+LF A +W+ I +KD D+EGD + ++PI G++ V+ A
Sbjct: 158 MLFLCALFAMWSREI--IKDYEDIEGDIQEKVISIPIKCGEKSVYIAA 203
>sp|A9A8Y7|DGGGP_METM6 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0995
PE=3 SV=1
Length = 278
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
+LF A +W+ I +KD D+EGD + ++PI G++ ++ A
Sbjct: 158 MLFLCALFAMWSREI--IKDYEDIEGDIKEKVISIPIKCGEKSIYIAA 203
>sp|Q6LWN2|DGGGP_METMP Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1677 PE=3 SV=1
Length = 278
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
+LF A +W+ I +KD D+EGD + ++PI G+ ++ A
Sbjct: 158 MLFLCALFAMWSREI--IKDYEDIEGDLKEKVISIPIKCGERSIYIAA 203
>sp|A4G0P3|DGGGP_METM5 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1730
PE=3 SV=1
Length = 278
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
+LF A +W+ I +KD D+EGD + ++PI G+ ++
Sbjct: 158 MLFLCALFAMWSREI--IKDYEDIEGDIQEKVISIPIKCGENSIY 200
>sp|P09628|ACHD_XENLA Acetylcholine receptor subunit delta OS=Xenopus laevis GN=chnrd
PE=2 SV=1
Length = 521
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 1 MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAK 43
+ + L +P ++IG +W +GGAY +LPP L + G+P + K
Sbjct: 476 LCLFLVTPVMIIG-TLWIFLGGAY--NLPPSLPFPGDPFIYTK 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,260,591
Number of Sequences: 539616
Number of extensions: 2633944
Number of successful extensions: 6940
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6889
Number of HSP's gapped (non-prelim): 54
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)