Query 030366
Match_columns 178
No_of_seqs 192 out of 807
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.7E-45 7.9E-50 305.5 18.9 176 2-178 85-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.1E-39 2.4E-44 277.9 18.7 170 6-178 118-306 (308)
3 PRK13595 ubiA prenyltransferas 99.9 7.2E-23 1.6E-27 172.9 14.3 154 7-173 117-278 (292)
4 PRK13105 ubiA prenyltransferas 99.8 5.6E-18 1.2E-22 143.0 16.7 110 6-118 103-224 (282)
5 PRK12872 ubiA prenyltransferas 99.8 6.7E-17 1.5E-21 135.7 16.9 155 6-166 102-276 (285)
6 TIGR01476 chlor_syn_BchG bacte 99.7 6E-17 1.3E-21 136.3 15.4 112 6-120 104-227 (283)
7 PRK12392 bacteriochlorophyll c 99.7 8.7E-17 1.9E-21 138.5 15.1 133 8-146 125-269 (331)
8 PRK05951 ubiA prenyltransferas 99.7 7.5E-16 1.6E-20 130.7 19.5 163 6-172 114-288 (296)
9 TIGR02235 menA_cyano-plnt 1,4- 99.7 2.1E-15 4.5E-20 127.6 19.0 117 6-125 104-232 (285)
10 TIGR02056 ChlG chlorophyll syn 99.7 8.1E-16 1.8E-20 131.1 16.7 111 7-120 127-249 (306)
11 PRK07419 1,4-dihydroxy-2-napht 99.7 2.5E-15 5.4E-20 128.2 18.8 117 6-125 117-245 (304)
12 PRK06080 1,4-dihydroxy-2-napht 99.7 3.7E-15 8.1E-20 125.8 18.8 116 7-125 112-239 (293)
13 PRK13591 ubiA prenyltransferas 99.7 9.7E-16 2.1E-20 130.3 14.3 132 13-144 124-269 (307)
14 PLN02922 prenyltransferase 99.7 8.4E-15 1.8E-19 125.5 20.0 117 6-125 121-259 (315)
15 PLN00012 chlorophyll synthetas 99.7 2.7E-15 5.8E-20 131.2 17.2 105 7-114 196-312 (375)
16 PRK12884 ubiA prenyltransferas 99.7 2.3E-15 5E-20 126.2 15.7 143 7-158 103-257 (279)
17 PRK07566 bacteriochlorophyll/c 99.7 4.7E-15 1E-19 126.9 16.7 107 7-116 131-251 (314)
18 COG0382 UbiA 4-hydroxybenzoate 99.7 2.7E-15 5.7E-20 126.7 14.9 156 8-173 116-283 (289)
19 PRK12888 ubiA prenyltransferas 99.6 1.4E-14 2.9E-19 122.5 17.2 103 55-160 160-263 (284)
20 TIGR00751 menA 1,4-dihydroxy-2 99.6 1.9E-14 4.1E-19 121.7 17.7 114 9-125 110-235 (284)
21 PRK13387 1,4-dihydroxy-2-napht 99.6 2.9E-14 6.2E-19 122.3 18.8 116 6-124 112-259 (317)
22 TIGR01475 ubiA_other putative 99.6 8E-15 1.7E-19 123.4 14.9 99 56-157 160-258 (282)
23 PRK12882 ubiA prenyltransferas 99.6 7.8E-15 1.7E-19 123.1 14.3 141 7-156 104-257 (276)
24 PRK12895 ubiA prenyltransferas 99.6 8.8E-15 1.9E-19 123.8 14.6 101 58-162 163-265 (286)
25 PRK13106 ubiA prenyltransferas 99.6 1.2E-14 2.5E-19 123.9 13.5 100 60-164 183-282 (300)
26 PLN02809 4-hydroxybenzoate non 99.6 3.2E-14 6.9E-19 120.6 15.6 146 7-163 113-272 (289)
27 PRK12875 ubiA prenyltransferas 99.6 8.9E-14 1.9E-18 117.5 16.9 101 13-118 118-229 (282)
28 PF01040 UbiA: UbiA prenyltran 99.6 7.8E-14 1.7E-18 114.0 14.5 91 7-101 91-193 (257)
29 PRK09573 (S)-2,3-di-O-geranylg 99.5 1.3E-13 2.7E-18 116.0 14.2 102 7-114 103-214 (279)
30 PRK12886 ubiA prenyltransferas 99.5 4.7E-13 1E-17 113.5 16.9 142 7-158 110-264 (291)
31 PRK12847 ubiA 4-hydroxybenzoat 99.5 2.3E-13 5E-18 114.8 14.6 143 7-157 113-264 (285)
32 PRK12876 ubiA prenyltransferas 99.5 4.2E-13 9E-18 114.2 16.0 113 62-176 180-297 (300)
33 PRK12874 ubiA prenyltransferas 99.5 5.4E-13 1.2E-17 113.2 16.1 108 57-170 170-277 (291)
34 COG1575 MenA 1,4-dihydroxy-2-n 99.5 1.1E-12 2.4E-17 111.1 17.8 162 6-174 119-299 (303)
35 PRK12870 ubiA 4-hydroxybenzoat 99.5 2.3E-13 5E-18 115.3 13.7 150 7-164 114-275 (290)
36 TIGR01474 ubiA_proteo 4-hydrox 99.5 2.8E-13 6.1E-18 114.2 14.0 140 7-157 108-259 (281)
37 PRK12848 ubiA 4-hydroxybenzoat 99.5 1.2E-12 2.6E-17 110.4 15.8 147 7-161 110-266 (282)
38 PRK12878 ubiA 4-hydroxybenzoat 99.5 3.5E-12 7.6E-17 109.3 16.1 146 7-160 140-294 (314)
39 PRK12883 ubiA prenyltransferas 99.4 9.8E-12 2.1E-16 104.4 16.2 94 7-107 103-207 (277)
40 PRK12873 ubiA prenyltransferas 99.4 5.3E-12 1.1E-16 107.3 14.6 100 61-164 177-279 (294)
41 PRK12871 ubiA prenyltransferas 99.4 7.7E-12 1.7E-16 106.4 15.4 99 54-156 175-273 (297)
42 TIGR01473 cyoE_ctaB protoheme 99.2 1.2E-09 2.5E-14 92.0 16.9 150 7-164 104-268 (280)
43 PRK04375 protoheme IX farnesyl 99.2 1.9E-09 4.2E-14 91.5 16.0 107 56-164 169-276 (296)
44 PRK12869 ubiA protoheme IX far 99.1 4.1E-09 8.9E-14 88.8 17.0 109 55-169 160-269 (279)
45 PRK13592 ubiA prenyltransferas 99.0 9.6E-09 2.1E-13 87.3 14.4 54 58-113 179-232 (299)
46 PRK13362 protoheme IX farnesyl 98.9 1.8E-07 3.8E-12 80.1 16.1 80 20-105 130-221 (306)
47 PLN02776 prenyltransferase 98.0 0.00039 8.5E-09 60.5 16.2 108 57-169 154-263 (341)
48 KOG4581 Predicted membrane pro 97.4 0.00062 1.3E-08 56.4 7.4 104 65-171 240-344 (359)
49 KOG1381 Para-hydroxybenzoate-p 97.1 0.0014 3E-08 55.5 6.2 99 63-165 233-332 (353)
50 PRK12884 ubiA prenyltransferas 94.4 0.64 1.4E-05 38.8 10.6 47 63-110 46-95 (279)
51 TIGR02056 ChlG chlorophyll syn 93.3 0.92 2E-05 38.7 9.7 54 62-115 62-117 (306)
52 PRK12872 ubiA prenyltransferas 93.0 1 2.2E-05 37.6 9.5 29 59-87 41-69 (285)
53 PRK12324 phosphoribose diphosp 92.2 0.95 2.1E-05 38.7 8.4 48 64-111 56-107 (295)
54 COG0382 UbiA 4-hydroxybenzoate 92.2 1.2 2.6E-05 37.5 8.9 46 62-107 55-104 (289)
55 COG0109 CyoE Polyprenyltransfe 91.7 7.9 0.00017 33.4 13.2 24 81-104 202-225 (304)
56 PF01040 UbiA: UbiA prenyltran 90.6 2.1 4.6E-05 34.5 8.6 35 64-98 33-68 (257)
57 PRK08238 hypothetical protein; 90.2 10 0.00022 34.6 13.4 74 7-87 294-377 (479)
58 PRK12887 ubiA tocopherol phyty 89.9 3.5 7.6E-05 35.3 9.6 42 65-107 60-108 (308)
59 PRK09573 (S)-2,3-di-O-geranylg 89.7 3.5 7.5E-05 34.5 9.4 48 63-111 46-96 (279)
60 PRK12882 ubiA prenyltransferas 89.2 3.1 6.7E-05 34.7 8.7 47 63-110 47-96 (276)
61 PRK13595 ubiA prenyltransferas 89.0 5.8 0.00013 34.0 10.2 52 58-110 51-105 (292)
62 PLN02809 4-hydroxybenzoate non 88.7 3.2 7E-05 35.3 8.5 34 63-96 54-88 (289)
63 TIGR01475 ubiA_other putative 88.6 3.8 8.2E-05 34.4 8.9 44 62-105 44-91 (282)
64 PRK12847 ubiA 4-hydroxybenzoat 88.2 2.8 6.1E-05 35.2 7.8 47 63-109 54-104 (285)
65 PRK08238 hypothetical protein; 87.9 6.1 0.00013 36.0 10.2 50 63-112 235-288 (479)
66 PRK12392 bacteriochlorophyll c 87.7 6 0.00013 34.4 9.7 47 70-117 66-115 (331)
67 TIGR01474 ubiA_proteo 4-hydrox 86.8 4.5 9.7E-05 34.0 8.2 44 64-107 50-97 (281)
68 PRK12883 ubiA prenyltransferas 86.7 5 0.00011 33.5 8.5 43 65-108 48-93 (277)
69 PLN00012 chlorophyll synthetas 86.2 8.8 0.00019 33.9 10.1 45 63-108 132-179 (375)
70 PRK07566 bacteriochlorophyll/c 85.5 5.8 0.00013 34.0 8.4 46 65-111 76-124 (314)
71 PRK12873 ubiA prenyltransferas 85.4 5.4 0.00012 34.1 8.1 45 63-107 53-101 (294)
72 PRK12870 ubiA 4-hydroxybenzoat 85.2 5.6 0.00012 33.7 8.1 45 63-107 55-103 (290)
73 PRK12875 ubiA prenyltransferas 85.1 8.2 0.00018 32.7 9.0 18 73-90 64-81 (282)
74 TIGR01476 chlor_syn_BchG bacte 84.7 3.9 8.5E-05 34.2 6.9 47 63-110 47-96 (283)
75 PRK12869 ubiA protoheme IX far 83.9 7.2 0.00016 32.8 8.1 48 63-110 45-96 (279)
76 PRK12848 ubiA 4-hydroxybenzoat 83.0 8.4 0.00018 32.4 8.2 47 64-110 52-102 (282)
77 PLN02776 prenyltransferase 80.2 23 0.00051 31.0 10.1 45 63-107 38-86 (341)
78 TIGR01473 cyoE_ctaB protoheme 80.0 13 0.00027 31.2 8.2 48 63-110 44-95 (280)
79 PRK13591 ubiA prenyltransferas 78.8 17 0.00036 31.4 8.6 28 64-92 68-95 (307)
80 PRK12324 phosphoribose diphosp 78.5 41 0.0009 28.7 12.2 30 7-42 114-143 (295)
81 PRK12886 ubiA prenyltransferas 77.3 14 0.0003 31.4 7.7 40 63-102 51-94 (291)
82 PRK13362 protoheme IX farnesyl 77.1 20 0.00042 30.7 8.6 48 63-110 56-107 (306)
83 PRK04375 protoheme IX farnesyl 76.3 19 0.00042 30.4 8.4 46 63-108 53-102 (296)
84 TIGR02235 menA_cyano-plnt 1,4- 76.0 48 0.001 28.1 11.8 49 63-112 44-95 (285)
85 PRK12878 ubiA 4-hydroxybenzoat 75.4 16 0.00034 31.4 7.6 43 63-105 81-127 (314)
86 cd00867 Trans_IPPS Trans-Isopr 75.1 1.9 4.2E-05 34.5 1.9 43 63-105 155-207 (236)
87 PRK10581 geranyltranstransfera 73.1 2.3 4.9E-05 36.4 1.8 48 61-108 210-268 (299)
88 PRK12888 ubiA prenyltransferas 73.1 21 0.00046 30.2 7.7 41 63-103 48-92 (284)
89 PRK12876 ubiA prenyltransferas 70.7 29 0.00063 29.8 8.1 41 63-103 56-100 (300)
90 PRK13106 ubiA prenyltransferas 70.2 33 0.00072 29.3 8.3 41 63-103 58-102 (300)
91 PRK12871 ubiA prenyltransferas 70.1 31 0.00067 29.4 8.1 43 70-112 57-112 (297)
92 PRK12874 ubiA prenyltransferas 69.6 37 0.0008 28.8 8.5 41 65-105 58-102 (291)
93 PRK07419 1,4-dihydroxy-2-napht 68.2 77 0.0017 27.2 11.7 52 63-115 57-111 (304)
94 PRK13105 ubiA prenyltransferas 66.8 46 0.001 28.2 8.5 21 71-91 51-71 (282)
95 PLN02922 prenyltransferase 62.6 1E+02 0.0022 26.5 11.7 50 62-112 59-111 (315)
96 PRK12895 ubiA prenyltransferas 62.3 61 0.0013 27.5 8.4 48 63-110 46-97 (286)
97 PRK06080 1,4-dihydroxy-2-napht 58.1 1.1E+02 0.0024 25.5 12.7 50 63-112 47-102 (293)
98 PRK13592 ubiA prenyltransferas 56.6 1.2E+02 0.0027 26.1 9.3 45 63-107 55-101 (299)
99 PRK05951 ubiA prenyltransferas 56.2 1.2E+02 0.0027 25.5 16.2 50 63-112 49-105 (296)
100 PF06210 DUF1003: Protein of u 53.0 47 0.001 24.2 5.4 77 5-88 1-77 (108)
101 COG0142 IspA Geranylgeranyl py 48.1 6.8 0.00015 33.7 0.3 40 62-101 202-252 (322)
102 COG4420 Predicted membrane pro 47.6 34 0.00074 27.5 4.2 80 2-89 52-132 (191)
103 PF14972 Mito_morph_reg: Mitoc 47.4 34 0.00073 26.9 4.0 63 91-153 39-107 (165)
104 PLN02878 homogentisate phytylt 46.2 1.3E+02 0.0027 25.8 7.7 42 65-107 34-78 (280)
105 TIGR00751 menA 1,4-dihydroxy-2 42.9 2E+02 0.0044 24.2 13.3 56 63-118 37-98 (284)
106 PF00348 polyprenyl_synt: Poly 41.4 9.6 0.00021 31.5 0.2 44 61-104 173-227 (260)
107 PRK06099 F0F1 ATP synthase sub 41.1 1.5E+02 0.0033 22.2 7.5 27 131-161 49-75 (126)
108 PF10361 DUF2434: Protein of u 41.0 1.1E+02 0.0024 26.3 6.5 12 158-169 178-189 (296)
109 CHL00151 preA prenyl transfera 39.2 12 0.00026 32.1 0.5 38 61-98 202-250 (323)
110 TIGR02748 GerC3_HepT heptapren 38.1 12 0.00026 32.1 0.4 37 62-98 198-245 (319)
111 cd00685 Trans_IPPS_HT Trans-Is 37.2 15 0.00031 30.3 0.7 34 62-95 177-221 (259)
112 cd00385 Isoprenoid_Biosyn_C1 I 35.8 12 0.00026 28.7 0.0 34 65-98 151-186 (243)
113 PRK13387 1,4-dihydroxy-2-napht 35.0 2.9E+02 0.0063 23.6 15.1 55 64-118 49-109 (317)
114 PRK10133 L-fucose transporter; 33.7 3.3E+02 0.0071 23.9 8.9 20 93-112 87-106 (438)
115 TIGR02749 prenyl_cyano solanes 33.1 1.8E+02 0.0039 24.9 6.8 47 65-112 78-124 (322)
116 TIGR02749 prenyl_cyano solanes 32.6 25 0.00053 30.3 1.4 38 61-98 201-249 (322)
117 TIGR00886 2A0108 nitrite extru 30.2 3E+02 0.0066 22.5 7.6 19 93-111 63-81 (366)
118 PLN02890 geranyl diphosphate s 28.9 21 0.00045 32.2 0.3 33 62-94 296-339 (422)
119 TIGR00890 2A0111 Oxalate/Forma 27.6 3.3E+02 0.0071 22.0 7.3 18 94-111 65-82 (377)
120 COG1575 MenA 1,4-dihydroxy-2-n 26.3 3.9E+02 0.0084 23.1 7.6 48 63-110 53-106 (303)
121 PLN02857 octaprenyl-diphosphat 25.3 69 0.0015 28.8 2.9 38 60-97 294-342 (416)
122 PF06645 SPC12: Microsomal sig 25.1 2.2E+02 0.0048 19.2 6.3 48 95-142 5-53 (76)
123 PF01036 Bac_rhodopsin: Bacter 24.1 3.7E+02 0.0081 21.4 9.7 12 56-67 76-87 (222)
124 TIGR02748 GerC3_HepT heptapren 23.7 94 0.002 26.6 3.4 47 65-112 74-120 (319)
125 PF09946 DUF2178: Predicted me 21.4 3.3E+02 0.007 19.7 8.5 31 71-107 43-73 (111)
126 PRK11383 hypothetical protein; 21.1 3.9E+02 0.0085 20.6 5.9 31 53-83 102-132 (145)
127 PF00348 polyprenyl_synt: Poly 20.1 2.9E+02 0.0062 22.6 5.5 49 63-112 42-90 (260)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.7e-45 Score=305.50 Aligned_cols=176 Identities=43% Similarity=0.843 Sum_probs=158.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH-H-------------------HHhcccccchHHHHHHHH
Q 030366 2 GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA-K-------------------IVLGNPVAFTKPVLFTAA 61 (178)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~-~-------------------~~~G~~~~~~~~~~~~~~ 61 (178)
|++.+++++++++..+++++++||.++| |+|+||+|++++ . +++|.+...++++++...
T Consensus 85 a~~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~ 163 (280)
T PLN02878 85 GWIVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA 163 (280)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence 3456778899999899899999998788 999999998776 1 122433344556777777
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVL 141 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l 141 (178)
|+++++.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+..++..+++.++..||++++..+
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L 243 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL 243 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhhhhCCCCChHHHHHHHHHHHHHHHHHHHhhhhcC
Q 030366 142 WRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR 178 (178)
Q Consensus 142 ~~~~~~vd~~~~~~~~~~y~fiw~lf~~~~~~~p~~~ 178 (178)
++|++++|.++++++++|||||||+||+||+++|++|
T Consensus 244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 244 WQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=277.86 Aligned_cols=170 Identities=32% Similarity=0.598 Sum_probs=150.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhc----------ccccchHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLG----------NPVAFTKPVLFTAAYLVIW 66 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G----------~~~~~~~~~~~~~~f~~l~ 66 (178)
.+++++....++.+++++|| .| |+|+||+|+.++ ...+| .....+...++...+.+++
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys--~p-P~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYS--LP-PIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVF 194 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHc--CC-chhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 46888888899999999999 68 999999998665 11122 1112345667777788899
Q ss_pred HHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 030366 67 NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAK 146 (178)
Q Consensus 67 ~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~ 146 (178)
+.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+..+...++...+.+||++.+..+++|.+
T Consensus 195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK12887 195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ 274 (308)
T ss_pred HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988888888888788999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHHHHhhhhcC
Q 030366 147 TNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR 178 (178)
Q Consensus 147 ~vd~~~~~~~~~~y~fiw~lf~~~~~~~p~~~ 178 (178)
++|.+|++|+++|||||||+||+||+++|++|
T Consensus 275 ~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 275 RVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975
No 3
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.90 E-value=7.2e-23 Score=172.91 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=110.9
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH--HHHhcc------cccchHHHHHHHHHHHHHHHHHHHHccCCC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--KIVLGN------PVAFTKPVLFTAAYLVIWNTAIAFVKDIPD 78 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~--~~~~G~------~~~~~~~~~~~~~f~~l~~~~~~i~~di~D 78 (178)
+|..+.....+.+++++|| .| |+|+|++|+.++ +..+|. ........+.......+|..++|++||+||
T Consensus 117 ~~~~~~l~~v~~~l~~~YS--~p-PlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~~~~~l~a~~~w~~g~dii~ai~D 193 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYS--LP-PLRFKARPFLDGLSNAAYALPLALPALALGAPVPWPPLLALMAWSVGKHAFDAAQD 193 (292)
T ss_pred hHHHHHHHHHHHHHHHHHc--cC-ccchhcCcchhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHhccC
Confidence 4566667778889999999 58 999999999876 222232 111111122222345678899999999999
Q ss_pred hHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHHH
Q 030366 79 VEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKS 158 (178)
Q Consensus 79 iegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~~ 158 (178)
+||||+.|+||+|+++|+|++.+++..+..++.+.+... ..|.... ..+.+. ....+.+ .|++++++++.
T Consensus 194 iegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~--~~~~~~~---~~~~~~---~~~~~~~--~~~~~~~~~~~ 263 (292)
T PRK13595 194 IPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPV--SRLTALA---LWLICG---GMALALW--RRPTPETAHRL 263 (292)
T ss_pred hHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHh--cchHHHH---HHHHHH---HHHHHHh--cCCCHHHHhcc
Confidence 999999999999999999999999999887776643322 2333221 222222 2222222 69999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 030366 159 FYMLTWKLYCVEFFL 173 (178)
Q Consensus 159 ~y~fiw~lf~~~~~~ 173 (178)
|..|+|.|+.++++.
T Consensus 264 ~~~~~~~~~~~g~~~ 278 (292)
T PRK13595 264 YPLSIVTPWIVGTVA 278 (292)
T ss_pred chHHHHHhHHHHHHH
Confidence 999999999998864
No 4
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=5.6e-18 Score=142.96 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=88.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++|+++....++++.++.|| .| |.|+|++|+.++ ..++|... ..+...+.....+.+++.+++++
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS--~~-p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii 179 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYS--AP-GLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAF 179 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhc--CC-CccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999 57 999999998766 11222211 12334555666677899999999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVG 118 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~ 118 (178)
||+||+||||++|+||+|+++|+|++.+++..++.++++..+..+
T Consensus 180 ~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 180 GAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776433
No 5
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=6.7e-17 Score=135.69 Aligned_cols=155 Identities=27% Similarity=0.330 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcc-cccchhhhhH---HHHhcc----------cccchHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAA---KIVLGN----------PVAFTKPVLFTAAYLVIWNTAIA 71 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~pl-rlK~~p~~~~---~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~ 71 (178)
.+|+.+....++.++++.||. | |. |+||.|..++ ....|. ....+...+....+.+++.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~ 178 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIRE 178 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 468888888888899999994 4 33 6899887766 111111 11123344555566778889999
Q ss_pred HHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 030366 72 FVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPS 151 (178)
Q Consensus 72 i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~ 151 (178)
++||++|+||||++|++|+|+++|+|+|++++..++.++++..+........++. ...........+.+.++...++
T Consensus 179 ~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
T PRK12872 179 IVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLL---LLVLLLLLAYVLYYIIKLFAAD 255 (285)
T ss_pred HHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998888877765554433331 2222223334444444444333
Q ss_pred ChH------HHHHHHHHHHHH
Q 030366 152 DNK------SAKSFYMLTWKL 166 (178)
Q Consensus 152 ~~~------~~~~~y~fiw~l 166 (178)
|++ .+.+.+|+.+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~g~~ 276 (285)
T PRK12872 256 DKKDLLYLSLLDKEHMLLGLI 276 (285)
T ss_pred cccchhHHHHHhHHHHHHHHH
Confidence 332 345556665543
No 6
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.74 E-value=6e-17 Score=136.32 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc-------c--ccchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN-------P--VAFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~-------~--~~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++|.......++.+.+++|| .| |+|+||++..++ ...++. . ...+...+......++++.+++.+
T Consensus 104 ~~~~~~~l~~~~~~~~~~Ys--~~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~ 180 (283)
T TIGR01476 104 GNWLIVLFTVVGIVLAVIYS--MP-PIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTL 180 (283)
T ss_pred HHHHHHHHHHHHHHHhheec--Cc-hhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44544666677888899999 57 999999986544 111111 0 112233333344456788889999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAF 120 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 120 (178)
||+||+||||+.|+||+|+++|+|++++++..++..+++..+.....
T Consensus 181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~ 227 (283)
T TIGR01476 181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI 227 (283)
T ss_pred HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888887766544433
No 7
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.73 E-value=8.7e-17 Score=138.50 Aligned_cols=133 Identities=22% Similarity=0.272 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc------c---ccchHHHHHHHHHHHHHHHHHHHHcc
Q 030366 8 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN------P---VAFTKPVLFTAAYLVIWNTAIAFVKD 75 (178)
Q Consensus 8 ~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~------~---~~~~~~~~~~~~f~~l~~~~~~i~~d 75 (178)
+..+...+++++++++|| .| |+|+||+++.+. ...+|. . ...+...+......++++.+++++||
T Consensus 125 ~~il~~~~~~l~l~~~YS--~~-P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d 201 (331)
T PRK12392 125 MVIISSILAGLFVAYIYS--AP-PLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMND 201 (331)
T ss_pred HHHHHHHHHHHHHhhhhc--CC-chhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455567788999999 47 999999876543 111111 0 11233344455567789999999999
Q ss_pred CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 030366 76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAK 146 (178)
Q Consensus 76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~ 146 (178)
++|+||||+.|+||+|+++|+|++.+++...+.++.+..+..+......+ .+....++.+..+.+|.+
T Consensus 202 ~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~ 269 (331)
T PRK12392 202 FKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQ 269 (331)
T ss_pred ccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987777666666665555544332 223333334444444444
No 8
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.72 E-value=7.5e-16 Score=130.74 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHH------hcc----cccchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIV------LGN----PVAFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~------~G~----~~~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
.+++.+...+++.++++.|| .| |+++|++|+ ....+. +|. ....+...+.......+++..+...
T Consensus 114 ~~~~~l~l~~~~~~~~~~Yt--~~-P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~ 190 (296)
T PRK05951 114 RGIGAVTLALLGVFLWTCYM--GP-PFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLS 190 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHc--CC-CcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788999999999 47 888997653 111111 221 1122333444555566778888999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN 153 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~ 153 (178)
||+||+|+||+.|+||+|+++|+|++ +........+|+..+........++......++.-.....+.++++..|.++.
T Consensus 191 n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~ 269 (296)
T PRK05951 191 NNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPD 269 (296)
T ss_pred CCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 99999999999999999999999999 66666677777776666665544443445666666667777788888777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030366 154 KSAKSFYMLTWKLYCVEFF 172 (178)
Q Consensus 154 ~~~~~~y~fiw~lf~~~~~ 172 (178)
++..+.++..=.++..+.+
T Consensus 270 ~~~~~~~~~~g~l~~~~~~ 288 (296)
T PRK05951 270 EATVQLFMLFGYLYILATL 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666665555544443
No 9
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.70 E-value=2.1e-15 Score=127.57 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLG----------NPVAFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G----------~~~~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++|+++..+.++.+.++.|| .| |+++|++|+ +.....+| ++...+...+.......+.+.++...
T Consensus 104 ~~~~~l~lg~~g~~~~~~Yt--~g-P~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~ 180 (285)
T TIGR02235 104 WQITVLALVGLCCFLGYLYQ--GP-PFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFC 180 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhc--CC-CcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHh
Confidence 45888888899999999999 47 999999884 22212222 12233455566666778889999999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL 125 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~ 125 (178)
||++|+|+||+.|+||+|+++|+|++.++...+...+|+..+........+|
T Consensus 181 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~ 232 (285)
T TIGR02235 181 SHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW 232 (285)
T ss_pred cCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999998777766655444
No 10
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.70 E-value=8.1e-16 Score=131.12 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhHH---HHhc-------cc--ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAK---IVLG-------NP--VAFTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~---~~~G-------~~--~~~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
+|+.+...+++++++++|| .| |+++||++..++. ..++ .. ...+...+......++++.++++.|
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt--~g-P~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n 203 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYS--AP-PLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVN 203 (306)
T ss_pred chHHHHHHHHHHHHHHHHc--CC-hhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888899999999 47 9999999765441 1111 11 2223334455555678999999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAF 120 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 120 (178)
|++|+|+||+.|+||+|+++|+|++++++..++..+++..+.....
T Consensus 204 ~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~ 249 (306)
T TIGR02056 204 DFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLA 249 (306)
T ss_pred HccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777655554433
No 11
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.69 E-value=2.5e-15 Score=128.16 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=92.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++|+++..++++++.+++|| .| |+++|++|+ +.....+|. ...++...+.......+.+..+...
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT--~g-P~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~ 193 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQ--GP-PFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFC 193 (304)
T ss_pred hcHHHHHHHHHHHHHhhecc--CC-CcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889989999999999999 47 999999884 111122221 2233445556666677888899999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL 125 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~ 125 (178)
||++|+|.||+.|+||+|+++|+|+++++...+...+|+..+........++
T Consensus 194 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~ 245 (304)
T PRK07419 194 SHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPW 245 (304)
T ss_pred cCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999998877766654444
No 12
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.69 E-value=3.7e-15 Score=125.84 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhh--hHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLM--AAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~--~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
+++++...+++.+++++|| .| |.|+|++++- .....+|. ....+...+....+..+++..+++.|
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys--~~-p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n 188 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYT--GG-PKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLAN 188 (293)
T ss_pred hHHHHHHHHHHHHHhhhhc--CC-CCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777788889999999 47 8888886631 11111221 12233455666777788999999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL 125 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~ 125 (178)
|+||+|+||++|+||+|+++|+|+++++...++.++++..+........++
T Consensus 189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (293)
T PRK06080 189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP 239 (293)
T ss_pred CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999998877766553333
No 13
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.68 E-value=9.7e-16 Score=130.34 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhCC---CCCcccccchhhhhH---HHHhcc-----cccchHHH---HHHHHHHHHHHHHHHHHccCCC
Q 030366 13 GFIIWCIVGGAYSID---LPPLLRWKGNPLMAA---KIVLGN-----PVAFTKPV---LFTAAYLVIWNTAIAFVKDIPD 78 (178)
Q Consensus 13 ~~~~~~~lg~~Ys~~---lp~plrlK~~p~~~~---~~~~G~-----~~~~~~~~---~~~~~f~~l~~~~~~i~~di~D 78 (178)
..+++.+.++.||.+ .|.|+|+|+.|..++ ...+|. ........ ..+..+.....++++++||++|
T Consensus 124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirD 203 (307)
T PRK13591 124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKD 203 (307)
T ss_pred HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346778889999963 256779999887766 222221 11111111 1122222234477889999999
Q ss_pred hHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Q 030366 79 VEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQ 144 (178)
Q Consensus 79 iegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~ 144 (178)
+||||+.|+||+|+++|+|+|+++...++.++++..+........++......-+..+....++..
T Consensus 204 iEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~ 269 (307)
T PRK13591 204 VKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVY 269 (307)
T ss_pred hHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887777666544433333333334444444443
No 14
>PLN02922 prenyltransferase
Probab=99.68 E-value=8.4e-15 Score=125.48 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=91.9
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cc----------cchHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PV----------AFTKPVLFTAAYL 63 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~----------~~~~~~~~~~~f~ 63 (178)
++|++++.+.++++.+++|| .| |+++|++|+ +.....+|. +. ..+...+...+..
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt--~g-P~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~ 197 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQ--CP-PFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLV 197 (315)
T ss_pred cChHHHHHHHHHHHHHHHHh--cC-CcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH
Confidence 56889989999999999999 47 999999885 211111111 11 1233455667778
Q ss_pred HHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL 125 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~ 125 (178)
.+.+..+...||++|+|.||+.|+||+|+++|+|+++++...+...+|+..+........++
T Consensus 198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~ 259 (315)
T PLN02922 198 GLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPL 259 (315)
T ss_pred HHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 88999999999999999999999999999999999999999999999998877766654443
No 15
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.68 E-value=2.7e-15 Score=131.16 Aligned_cols=105 Identities=25% Similarity=0.294 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhc-------cc--ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLG-------NP--VAFTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G-------~~--~~~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
+|..+...+++++++++|| .| |+++||+++.++ ...++ .. ...+...+....+.++++.++++.|
T Consensus 196 ~~~~~~l~l~gi~l~~~YS--~p-Pl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivn 272 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYS--AP-PLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVN 272 (375)
T ss_pred cHHHHHHHHHHHHHhhhhc--CC-chhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677888899999 48 999999987655 11111 11 1223344444556678999999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHH
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGV 114 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 114 (178)
|+||+||||+.|++|+|+++|+|++++++..++.+..+..
T Consensus 273 d~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~ 312 (375)
T PLN00012 273 DFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV 312 (375)
T ss_pred hhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876666555533
No 16
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.67 E-value=2.3e-15 Score=126.22 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccccc--chHHHHHHHHHHHHHHHHHHHHcc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA--FTKPVLFTAAYLVIWNTAIAFVKD 75 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~--~~~~~~~~~~f~~l~~~~~~i~~d 75 (178)
++.......++.+.++.||. ++||+|..++ +...|.... .+...+......++++.++++.||
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKD 176 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777888999992 3788776544 222232211 122344445567788899999999
Q ss_pred CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-hhCCCCChH
Q 030366 76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQA-KTNDPSDNK 154 (178)
Q Consensus 76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~-~~vd~~~~~ 154 (178)
+||+|+||+.|+||+|+++|+|++.+++...+..+++..+........++ .+.....+....+.+++ +..+.+|++
T Consensus 177 ~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (279)
T PRK12884 177 IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRE 253 (279)
T ss_pred hhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999988887777765544433322222 34445555556666665 566666655
Q ss_pred HHHH
Q 030366 155 SAKS 158 (178)
Q Consensus 155 ~~~~ 158 (178)
..++
T Consensus 254 ~~~~ 257 (279)
T PRK12884 254 TIRK 257 (279)
T ss_pred HHHH
Confidence 4333
No 17
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.66 E-value=4.7e-15 Score=126.87 Aligned_cols=107 Identities=22% Similarity=0.359 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc-------c----ccchHHHHHHHHHHHHHHHHHHH
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN-------P----VAFTKPVLFTAAYLVIWNTAIAF 72 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~-------~----~~~~~~~~~~~~f~~l~~~~~~i 72 (178)
+++.....+++.+++++|| .| |+++||++..++ ...+|. . ...+...+......++++.+++.
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt--~g-P~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 207 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYS--AP-PLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMT 207 (314)
T ss_pred ChHHHHHHHHHHHHHHHhc--CC-ccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4666777778888899999 47 899999885544 111211 1 11223344445556678888999
Q ss_pred HccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHH
Q 030366 73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVL 116 (178)
Q Consensus 73 ~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~ 116 (178)
+||++|+|+||+.|+||+|+++|+|++.+++..++..+++..+.
T Consensus 208 ~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~ 251 (314)
T PRK07566 208 LNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA 251 (314)
T ss_pred HHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777776543
No 18
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.66 E-value=2.7e-15 Score=126.74 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc---hHHHHHHHHHHHHHHHHHHHHcc
Q 030366 8 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF---TKPVLFTAAYLVIWNTAIAFVKD 75 (178)
Q Consensus 8 ~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~---~~~~~~~~~f~~l~~~~~~i~~d 75 (178)
+..++....++++.+.|- ++||.+.+.+ ...+|..+.. +.+.+....+..+|+.+++++||
T Consensus 116 ~~~~~l~~~~~~l~~~Y~-------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~ 188 (289)
T COG0382 116 PLAFLLSLAALVLALAYP-------FLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYA 188 (289)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667788888883 5899887666 2223333322 45566666778899999999999
Q ss_pred CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHH
Q 030366 76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKS 155 (178)
Q Consensus 76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~ 155 (178)
.||+|+||+.|++|+|+.+|+|++..++...+ ...+.....+..... ....+..++.+....+.+|+..+|.++++.
T Consensus 189 ~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (289)
T COG0382 189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPA 265 (289)
T ss_pred ccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 99999999999999999999999999998888 333333333333221 113578888899999999999999998878
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030366 156 AKSFYMLTWKLYCVEFFL 173 (178)
Q Consensus 156 ~~~~y~fiw~lf~~~~~~ 173 (178)
...++..-...-...++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (289)
T COG0382 266 CFALFDVNLLLGLLLFIG 283 (289)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 777777666555555443
No 19
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.64 E-value=1.4e-14 Score=122.54 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366 55 PVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH 134 (178)
Q Consensus 55 ~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~ 134 (178)
..+......++|+.+.+++|++||+|+||+.|+||+|+++|+|++.+++..++.+..+.....+......+ .+..+.
T Consensus 160 ~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~ 236 (284)
T PRK12888 160 PAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGL 236 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHH
Confidence 33444455678999999999999999999999999999999999999888887777766665555544333 456677
Q ss_pred HHHHHHHHHhhhhCCCCChHHH-HHHH
Q 030366 135 SALAFVLWRQAKTNDPSDNKSA-KSFY 160 (178)
Q Consensus 135 ~i~~~~l~~~~~~vd~~~~~~~-~~~y 160 (178)
.+.+..+.+||+.+|++|.+.. +.|+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 237 AITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 7888999999999999998765 4654
No 20
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.64 E-value=1.9e-14 Score=121.71 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHHccC
Q 030366 9 PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFVKDI 76 (178)
Q Consensus 9 ~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~~di 76 (178)
++...++++.+.+++||. | |.++|++|+ +.....+|. ....+...+.......+.+..+...||+
T Consensus 110 ~~l~lg~~~~~~~~~Yt~--g-P~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~ 186 (284)
T TIGR00751 110 WFIALGALCIAAAITYTV--G-SKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNL 186 (284)
T ss_pred HHHHHHHHHHHHhHhhcC--C-CCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 566777889999999994 7 889999873 222222321 1223334444455566788899999999
Q ss_pred CChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366 77 PDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL 125 (178)
Q Consensus 77 ~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~ 125 (178)
+|+|+||++|+||+|+++|+|+++++...+...+|+..+........++
T Consensus 187 ~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~ 235 (284)
T TIGR00751 187 RDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW 235 (284)
T ss_pred ccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999999999999999999999999999999987776655444333
No 21
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.64 E-value=2.9e-14 Score=122.27 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHH------------------
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKP------------------ 55 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~------------------ 55 (178)
.+|+++..++++.+.++.|| .| |+++|++|+ +.....+|. ....+..
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt--~g-P~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~ 188 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYT--GG-PLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAI 188 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhc--CC-CcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHH
Confidence 56888888999999999999 47 899999883 111112221 1111111
Q ss_pred --HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 030366 56 --VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSV 124 (178)
Q Consensus 56 --~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~ 124 (178)
++.......+.+..+.+.||++|+|+||++|+||+|+++|+|++.++...+...+|+..+........+
T Consensus 189 ~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp 259 (317)
T PRK13387 189 IAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYIS 259 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 122556667788888999999999999999999999999999999999999999998777666554333
No 22
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.63 E-value=8e-15 Score=123.43 Aligned_cols=99 Identities=17% Similarity=0.310 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 030366 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHS 135 (178)
Q Consensus 56 ~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~ 135 (178)
.+......++|+.+.+++||.||+|+|++.|++|+|+++|+|++.+.+...+.++++.....+......+ .+..+..
T Consensus 160 ~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~ 236 (282)
T TIGR01475 160 AWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALI 236 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHH
Confidence 3444455678999999999999999999999999999999999999988888777776665555443322 4556666
Q ss_pred HHHHHHHHhhhhCCCCChHHHH
Q 030366 136 ALAFVLWRQAKTNDPSDNKSAK 157 (178)
Q Consensus 136 i~~~~l~~~~~~vd~~~~~~~~ 157 (178)
+....+.++++.+|++|+++.+
T Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~ 258 (282)
T TIGR01475 237 LIGLILAYEHYIVDPGDQSKIQ 258 (282)
T ss_pred HHHHHHHHHHHHcCCCCHHHHH
Confidence 6678899999999998877553
No 23
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=7.8e-15 Score=123.07 Aligned_cols=141 Identities=23% Similarity=0.278 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc---hHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF---TKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~---~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
++.......++.++.+.|| + |+||+|..++ .+.+|..... ....+......++++.+++++|
T Consensus 104 ~~~~~~~~~~~~~~~~~Yt---~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~ 177 (276)
T PRK12882 104 PPLCLAIALFNSLLLVLYA---E---TLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIK 177 (276)
T ss_pred hHHHHHHHHHHHHHHHHHH---H---HHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555666777788999 2 6899887655 1223322111 1222333444567888999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHhhhhCCCCCh
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSA-LAFVLWRQAKTNDPSDN 153 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i-~~~~l~~~~~~vd~~~~ 153 (178)
|+||+|+||+.|+||+|+++|+|++.+++...+....+........... .. .+.....+ .+..+.+..+..|.+|+
T Consensus 178 ~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~~~l~~~~~~~~~~~~ 254 (276)
T PRK12882 178 DVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF--GL-WYLVLVAPADLVMLAAAYRSLKKTDP 254 (276)
T ss_pred hhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hH-HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999877765554433322111111 11 23333322 23444445556666665
Q ss_pred HHH
Q 030366 154 KSA 156 (178)
Q Consensus 154 ~~~ 156 (178)
++.
T Consensus 255 ~~~ 257 (276)
T PRK12882 255 TAS 257 (276)
T ss_pred HHH
Confidence 443
No 24
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=8.8e-15 Score=123.82 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 030366 58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSAL 137 (178)
Q Consensus 58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~ 137 (178)
......++|+.+.|++++.||+|+||+.|+||+|+++|+|++.+++..++.++.......+.... ...+.++..+.
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~ 238 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIII 238 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHH
Confidence 33445679999999999999999999999999999999999998888888777776666664443 24577888999
Q ss_pred HHHHHHhhhhCCCCChHHH-HH-HHHH
Q 030366 138 AFVLWRQAKTNDPSDNKSA-KS-FYML 162 (178)
Q Consensus 138 ~~~l~~~~~~vd~~~~~~~-~~-~y~f 162 (178)
+..+.+||+.+|++|.++. .+ |.+.
T Consensus 239 ~~~l~~q~~~~~~~~~~~~~~~~F~~N 265 (286)
T PRK12895 239 YTLVIYQHLIIDPRNPINKRMSFFNAN 265 (286)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 9999999999999999887 54 4443
No 25
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.61 E-value=1.2e-14 Score=123.87 Aligned_cols=100 Identities=14% Similarity=0.241 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAF 139 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~ 139 (178)
....++|+.++|++||+||+|+||+.|+||+|+++| |++++++..++.++.......+...... ..+..+..+...
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg---~~y~~~~~~~~~ 258 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG---PIAIAATILHGL 258 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHH
Confidence 334678999999999999999999999999999999 9999999888887777666665554432 256677778889
Q ss_pred HHHHhhhhCCCCChHHHHHHHHHHH
Q 030366 140 VLWRQAKTNDPSDNKSAKSFYMLTW 164 (178)
Q Consensus 140 ~l~~~~~~vd~~~~~~~~~~y~fiw 164 (178)
.+.+||..++++ ++-.+.|.+..|
T Consensus 259 ~l~~~~~~~~~~-~~~~~~F~~n~~ 282 (300)
T PRK13106 259 IMAYAYYLASKK-GDFGRAFYYNIY 282 (300)
T ss_pred HHHHHHHHhCCc-hHHHHHHHHccH
Confidence 999999999988 555677766554
No 26
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.60 E-value=3.2e-14 Score=120.59 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cch-HHHHHHHHHHHHHHHHHHHH
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFT-KPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~-~~~~~~~~f~~l~~~~~~i~ 73 (178)
++..+....++.++...|+ . .||+..... +.+.|..+ ..+ ..........++|+.+.+.+
T Consensus 113 ~~~~~~l~~~~~~~~~~Y~---~----~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ 185 (289)
T PLN02809 113 NNYSRILGASSLLLVFTYP---L----MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTI 185 (289)
T ss_pred hHHHHHHHHHHHHHHHHHh---H----HHhcCcchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777788888 2 677553322 11122111 112 22222334456789999999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN 153 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~ 153 (178)
++.||+|+||+.|++|+|+++|+|+..+++ .++.+++......+......+ .+.+++.+.+..+.+|++.+|++|+
T Consensus 186 ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~ 261 (289)
T PLN02809 186 YAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSR 261 (289)
T ss_pred HHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999999777766 466666666555555443322 4556888999999999999999998
Q ss_pred HHH-HHHHHHH
Q 030366 154 KSA-KSFYMLT 163 (178)
Q Consensus 154 ~~~-~~~y~fi 163 (178)
++. +.|.+..
T Consensus 262 ~~~~~~F~~n~ 272 (289)
T PLN02809 262 ADCNRKFVSNK 272 (289)
T ss_pred HHHHHHHHhCC
Confidence 876 4444433
No 27
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.59 E-value=8.9e-14 Score=117.51 Aligned_cols=101 Identities=21% Similarity=0.431 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhCCCCCcccccchhhhhHHH----H----hcc---cccchHHHHHHHHHHHHHHHHHHHHccCCChHh
Q 030366 13 GFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKI----V----LGN---PVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEG 81 (178)
Q Consensus 13 ~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~~----~----~G~---~~~~~~~~~~~~~f~~l~~~~~~i~~di~Dieg 81 (178)
.++..++.+++|| .| |+|+|++|..+... . .+. ....++..+... .++++.+++++||+||+|+
T Consensus 118 ~ll~~i~~~~~YS--~p-P~rlk~~p~~~~~~~g~~~~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~ 192 (282)
T PRK12875 118 ALLAFLVLSVEYS--AP-PLRFKTTPVLDSLSNGLYILPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEP 192 (282)
T ss_pred HHHHHHHHHHHHc--CC-CccchhccHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence 3455678899999 48 99999999765411 0 110 111233333333 3589999999999999999
Q ss_pred hHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366 82 DKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVG 118 (178)
Q Consensus 82 Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~ 118 (178)
||+.|+||+|+++|+|++++++..++.++....+..+
T Consensus 193 D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 193 DRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877666544
No 28
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.57 E-value=7.8e-14 Score=114.04 Aligned_cols=91 Identities=35% Similarity=0.584 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHH------hccccc---chHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIV------LGNPVA---FTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~------~G~~~~---~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
+++.+....+..+.+.+|| | |.|+||+|..++ ... .|.... .+...+....+.+++.......+
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys---~-~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYS---P-PLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFN 166 (257)
T ss_pred CchhHHHHHHHHHHHHHHh---h-hhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777788889999 6 899999997655 111 111111 12334444445567777888889
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHH
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFS 101 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~ 101 (178)
|++|+|+||+.|+||+|+++|+|+++.
T Consensus 167 ~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 167 DIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 999999999999999999999999998
No 29
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.55 E-value=1.3e-13 Score=116.00 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc-hHHHHHHHHHHHHHHHHHHHHccC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF-TKPVLFTAAYLVIWNTAIAFVKDI 76 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~-~~~~~~~~~f~~l~~~~~~i~~di 76 (178)
++.......++.++.+.|| + ++||++..++ ..+.|..... ....+......++|+.+++++||.
T Consensus 103 ~~~~~~l~~~~~~~~~~Ys---~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 176 (279)
T PRK09573 103 NIYAFLIALLNSILLYLYA---K---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDI 176 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH---H---HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666677777888999 2 4688765544 2222322111 122333344456888899999999
Q ss_pred CChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHH
Q 030366 77 PDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGV 114 (178)
Q Consensus 77 ~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 114 (178)
||+|+||+.|++|+|+++|+|++.+++...+..+.+..
T Consensus 177 ~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~ 214 (279)
T PRK09573 177 EDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS 214 (279)
T ss_pred hhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876665554433
No 30
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.54 E-value=4.7e-13 Score=113.50 Aligned_cols=142 Identities=14% Similarity=0.093 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
++.......++.+....|+ . .||+..... +.+.|..+ ..+...+......++|+.+.++++
T Consensus 110 ~~~~~~l~~~~~~~~~~Y~---~----~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~ 182 (291)
T PRK12886 110 NPLCLYLSPPALFFLLLYS---Y----CKRFTALAHVVLGFCLALAPLGAWIAIRGTIELPAILLGLAVLFWVAGFDILY 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHh---h----hhccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666788898 2 466443222 11222211 122333444444678899999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh-
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN- 153 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~- 153 (178)
++||.|+||+.|+||+|+++|+|++.+........++......+......+ .+..+..+....+.++++.++++|+
T Consensus 183 a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~ 259 (291)
T PRK12886 183 ALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLT 259 (291)
T ss_pred HhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 999999999999999999999999999987776666665555554433222 3445555566666688899988874
Q ss_pred HHHHH
Q 030366 154 KSAKS 158 (178)
Q Consensus 154 ~~~~~ 158 (178)
++.++
T Consensus 260 ~~~~~ 264 (291)
T PRK12886 260 RLDAA 264 (291)
T ss_pred HHHHH
Confidence 34433
No 31
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.53 E-value=2.3e-13 Score=114.79 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhh--HHHHhcc----c---ccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMA--AKIVLGN----P---VAFTKPVLFTAAYLVIWNTAIAFVKDIP 77 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~--~~~~~G~----~---~~~~~~~~~~~~f~~l~~~~~~i~~di~ 77 (178)
++..+....++.+++..|+. .-|.+..|.+. ..+.++. . ...+...++.....++|+.+.+.++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~ 188 (285)
T PRK12847 113 NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQ 188 (285)
T ss_pred hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777788888999982 22333334221 1111111 1 1123344445555779999999999999
Q ss_pred ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHH
Q 030366 78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAK 157 (178)
Q Consensus 78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~ 157 (178)
|+|+|+++|++|+|+++|+|++.++........++..+........+ .+.++.++....+.+++..+|++|+++.+
T Consensus 189 D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (285)
T PRK12847 189 DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN----IFYLAILAAAGIFYYQYKLLDFDNPANCM 264 (285)
T ss_pred cHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999998777655555444333222222 23345555667888999999988876543
No 32
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.53 E-value=4.2e-13 Score=114.20 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVL 141 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l 141 (178)
..++|+.++|++++.||+|+||+.|+||+|+++|+|++.+++...+.++.+.....+......+ ..+..+.++.+..+
T Consensus 180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l 257 (300)
T PRK12876 180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVIL 257 (300)
T ss_pred HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHH
Confidence 3557788999999999999999999999999999999988888888777776666665544332 23444554344444
Q ss_pred -HHhh-hhCCCCChHHHHHHHH-HHH--HHHHHHHHhhhh
Q 030366 142 -WRQA-KTNDPSDNKSAKSFYM-LTW--KLYCVEFFLLHF 176 (178)
Q Consensus 142 -~~~~-~~vd~~~~~~~~~~y~-fiw--~lf~~~~~~~p~ 176 (178)
.++| +.+|.++++.+.++++ ..| ..+++..+..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~ 297 (300)
T PRK12876 258 KTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFL 297 (300)
T ss_pred HHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence 5666 7776555665555443 233 334444444443
No 33
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.52 E-value=5.4e-13 Score=113.17 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 030366 57 LFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSA 136 (178)
Q Consensus 57 ~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i 136 (178)
+......++|+.+.++++++||+|+||+.|++|+|+++|+|++.+.+...+..+.+.....+...... ..+..+..+
T Consensus 170 ~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 246 (291)
T PRK12874 170 VFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIV 246 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHH
Confidence 33344467999999999999999999999999999999999999887666655544444333332222 245567778
Q ss_pred HHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHHH
Q 030366 137 LAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVE 170 (178)
Q Consensus 137 ~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~~ 170 (178)
.+..+.++++.++.+|+++.+.| -.-|.|..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~f---f~sn~~l~ 277 (291)
T PRK12874 247 SALILLYEHYLVRKDFKKIDKAF---FTLNGYLG 277 (291)
T ss_pred HHHHHHHHHHHhcCCChHHHHHH---HHHHHHHH
Confidence 88899999999976666554443 34444444
No 34
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-12 Score=111.15 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHH
Q 030366 6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++|..+..+.+++++|+.|+. + |.++.+.|+ +.....+|. +...+.......+...+.+..+...
T Consensus 119 s~~~~l~lG~l~~~~g~~YTg--G-p~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~a 195 (303)
T COG1575 119 SDWLVLLLGLLCIAAGILYTG--G-PFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLA 195 (303)
T ss_pred hhhHHHHHHHHHHHheeeecc--C-CcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 467778888899999999995 4 556666663 333233332 2223445666677788888899999
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhC----C
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTN----D 149 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~v----d 149 (178)
|+++|+|.|++.|++|+|+++|+|+++.+...++..+|++.+...+....++...+ ..+......+..|.+ +
T Consensus 196 NNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll----~ll~~Pl~ir~~r~v~~~~~ 271 (303)
T COG1575 196 NNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL----FLLALPLAIRAARPVRQNQV 271 (303)
T ss_pred cccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999988776655554442222 233334444444444 2
Q ss_pred CCChH---HHHHHHHHHHHHHHHHHHhh
Q 030366 150 PSDNK---SAKSFYMLTWKLYCVEFFLL 174 (178)
Q Consensus 150 ~~~~~---~~~~~y~fiw~lf~~~~~~~ 174 (178)
|.+.. ...+.-+.+|.+.++..++.
T Consensus 272 ~~~~~p~l~~~~~~~~~~~~l~~~~i~~ 299 (303)
T COG1575 272 PATLVPMLKNTVKANLLWNLLLAVGILL 299 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 35677788888877766554
No 35
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.52 E-value=2.3e-13 Score=115.30 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH------HHHhccc---ccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------KIVLGNP---VAFTKPVLFTAAYLVIWNTAIAFVKDIP 77 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~------~~~~G~~---~~~~~~~~~~~~f~~l~~~~~~i~~di~ 77 (178)
++..+.....+.++...|+. ..|.+..|-+.. ....|.. ...+...+......++|+.+.++++++|
T Consensus 114 ~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~ 189 (290)
T PRK12870 114 NPLSFWLCVAAVPVIFLYPL----AKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMS 189 (290)
T ss_pred hHHHHHHHHHHHHHHHHhhh----hhhccccceeeehHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566777788882 334555552211 2222211 1122334444455779999999999999
Q ss_pred ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhC--CCCChHH
Q 030366 78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTN--DPSDNKS 155 (178)
Q Consensus 78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~v--d~~~~~~ 155 (178)
|+|+|++.|++|+|+++|+|++.+++. ++.++.......+......+ .+..+..+....+.+|+.++ |.+|++.
T Consensus 190 D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (290)
T PRK12870 190 DREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLA 265 (290)
T ss_pred hHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHH
Confidence 999999999999999999999998766 44444444444444433222 34566777888999999999 5556655
Q ss_pred H-HHHHHHHH
Q 030366 156 A-KSFYMLTW 164 (178)
Q Consensus 156 ~-~~~y~fiw 164 (178)
. +.|++..|
T Consensus 266 ~~~~F~~n~~ 275 (290)
T PRK12870 266 YGQLFLQNVW 275 (290)
T ss_pred HHHHHHHhhH
Confidence 5 44444443
No 36
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.52 E-value=2.8e-13 Score=114.20 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccc---ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNP---VAFTKPVLFTAAYLVIWNTAIAFVK 74 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~---~~~~~~~~~~~~f~~l~~~~~~i~~ 74 (178)
++........+.++.+.|+. .||+..... ..+.|.. ...+...+......++|+.+.+.++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~ 180 (281)
T TIGR01474 108 NPLTILLGVASLALVATYPF-------MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIY 180 (281)
T ss_pred hHHHHHHHHHHHHHHHHhch-------hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888999982 455332211 1112211 1122333333444678999999999
Q ss_pred cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChH
Q 030366 75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNK 154 (178)
Q Consensus 75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~ 154 (178)
++||+|+||+.|+||+|+++|+|++.+. ..++.++.......+...... ..+.++..+....+.+++..+|++|++
T Consensus 181 a~~D~e~D~~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~ 256 (281)
T TIGR01474 181 AMQDKEDDIKIGVKSTALRFGDNTKPWL-GGLYALMILLLALAGLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPE 256 (281)
T ss_pred HHhhHHhHHHcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999887554 344444333333333332221 235566667788889999999887776
Q ss_pred HHH
Q 030366 155 SAK 157 (178)
Q Consensus 155 ~~~ 157 (178)
+.+
T Consensus 257 ~~~ 259 (281)
T TIGR01474 257 NCL 259 (281)
T ss_pred HHH
Confidence 544
No 37
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.49 E-value=1.2e-12 Score=110.42 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhh--H----HHHhcccc---cchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMA--A----KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFVKDIP 77 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~--~----~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~~di~ 77 (178)
++........+.++.+.|+ . ..|.|..|.+. . ....|... ..+...+......++|....+..+++|
T Consensus 110 ~~~~~~l~~~~~~~~~~Y~---~-~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~ 185 (282)
T PRK12848 110 NTLTIWLSVAALALAWIYP---F-MKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMV 185 (282)
T ss_pred hHHHHHHHHHHHHHHHHHH---h-HHhcCcccHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555566777788897 2 33444444221 1 11222111 123333444445678999999999999
Q ss_pred ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHH-
Q 030366 78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSA- 156 (178)
Q Consensus 78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~- 156 (178)
|+|+||+.|++|+|+++|+|++.+.+ .++.+........+..... ...+..+..+....+.++++.+|.+|+++.
T Consensus 186 D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (282)
T PRK12848 186 DRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACF 261 (282)
T ss_pred cHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999998876 3444444433333333222 224556677888889999999999887765
Q ss_pred HHHHH
Q 030366 157 KSFYM 161 (178)
Q Consensus 157 ~~~y~ 161 (178)
+.|++
T Consensus 262 ~~F~~ 266 (282)
T PRK12848 262 KAFLN 266 (282)
T ss_pred HHHHh
Confidence 44444
No 38
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.46 E-value=3.5e-12 Score=109.29 Aligned_cols=146 Identities=15% Similarity=0.070 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHH----Hhcc---cccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKI----VLGN---PVAFTKPVLFTAAYLVIWNTAIAFVKDIP 77 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~----~~G~---~~~~~~~~~~~~~f~~l~~~~~~i~~di~ 77 (178)
+|..+...+++.++...|+ + .-|.+..|. .+..+ +.|. ....+...+......++|+...+.++++|
T Consensus 140 ~~~~~~l~~~~~~~~~~Y~---~-~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~ 215 (314)
T PRK12878 140 NWFAIALGIASLAIVAAYP---F-MKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQ 215 (314)
T ss_pred hHHHHHHHHHHHHHHHHHH---H-HHhcCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777778888899998 2 112233332 12111 1111 11122223333334668999999999999
Q ss_pred ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHH
Q 030366 78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAK 157 (178)
Q Consensus 78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~ 157 (178)
|+|+||+.|++|+|+++|+|++.+......... ....+.......++ .+.++.......+.+|+.++|++|+++.+
T Consensus 216 D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (314)
T PRK12878 216 DKEDDALIGVKSTARLFGDHTKTWLVLFYGLAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCL 291 (314)
T ss_pred hHhhHHHcCCcccchHhchhhHHHHHHHHHHHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHH
Confidence 999999999999999999999998874443333 32222222222222 23344444455678889999888776644
Q ss_pred HHH
Q 030366 158 SFY 160 (178)
Q Consensus 158 ~~y 160 (178)
+++
T Consensus 292 ~~F 294 (314)
T PRK12878 292 RLF 294 (314)
T ss_pred HHH
Confidence 333
No 39
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.42 E-value=9.8e-12 Score=104.36 Aligned_cols=94 Identities=26% Similarity=0.300 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhHH---------HHhccccc--chHHHHHHHHHHHHHHHHHHHHcc
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAK---------IVLGNPVA--FTKPVLFTAAYLVIWNTAIAFVKD 75 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~---------~~~G~~~~--~~~~~~~~~~f~~l~~~~~~i~~d 75 (178)
++..+.....+.+.++.|+. ++|+.+.+++. .+.|.... .+...+.. .+.++++..+++.||
T Consensus 103 ~~~~~~~~~~~~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~~-~~~fl~~~~~~~~~~ 175 (277)
T PRK12883 103 NIEAFLFALGAYVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA-ICAFLVNVAREIMKD 175 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHHHhh
Confidence 56666666777788999993 35665544431 11222111 12222222 224567778999999
Q ss_pred CCChHhhHhcCCcccceeeCHHHHHHHHHHHH
Q 030366 76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIM 107 (178)
Q Consensus 76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~ 107 (178)
+||+|+||+.|+||+|+++|+|+++++.....
T Consensus 176 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 176 IEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred hhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 99999999999999999999999999876554
No 40
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.42 E-value=5.3e-12 Score=107.28 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFV 140 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~ 140 (178)
...++|+.+.++++++||.|.|++.|++|+|+++|+ ++......++.++.+.....+......+ .+..+..+.+..
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~ 252 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIG 252 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHH
Confidence 446799999999999999999999999999999996 6666777787777776666676655433 566777888899
Q ss_pred HHHhhhhCCCCCh--HH-HHHHHHHHH
Q 030366 141 LWRQAKTNDPSDN--KS-AKSFYMLTW 164 (178)
Q Consensus 141 l~~~~~~vd~~~~--~~-~~~~y~fiw 164 (178)
+.+||+.+|++|. ++ .+.|++..|
T Consensus 253 l~~~~~~~~~~~~~~~~c~~~F~~n~~ 279 (294)
T PRK12873 253 MQRDILKLFPEKQSIKTIGNHFSNQVI 279 (294)
T ss_pred HHHHHHHhCcCcccHHHHHHHHHhccH
Confidence 9999999999873 33 477777665
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.42 E-value=7.7e-12 Score=106.43 Aligned_cols=99 Identities=11% Similarity=0.176 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 030366 54 KPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMIS 133 (178)
Q Consensus 54 ~~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g 133 (178)
...+....+.++|+.+++.+||++|+|+|++.|+||+|+++|+|++.+.......+..+..+ +.... .........
T Consensus 175 ~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~--~g~~~~~~~ 250 (297)
T PRK12871 175 MTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRE--LGPIALYGF 250 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHH--hhHHHHHHH
Confidence 34455556678999999999999999999999999999999999999876655544443322 22222 222223333
Q ss_pred HHHHHHHHHHhhhhCCCCChHHH
Q 030366 134 HSALAFVLWRQAKTNDPSDNKSA 156 (178)
Q Consensus 134 ~~i~~~~l~~~~~~vd~~~~~~~ 156 (178)
..+.+..+.+|.+..+.+|+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 251 LAGFVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH
Confidence 45666778888888888887764
No 42
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.21 E-value=1.2e-09 Score=92.03 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHH-HHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHH
Q 030366 7 SPPLVIGFIIWCIV-GGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFV 73 (178)
Q Consensus 7 ~~~l~~~~~~~~~l-g~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~ 73 (178)
++.......++.++ ...|+. + .||.+.... +...|... ..+...+......++|.......
T Consensus 104 ~~~~~~l~~~~~~~~~~~Yt~--~----lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~ 177 (280)
T TIGR01473 104 NPLAALLGLFGIFFYVIVYTI--W----LKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWA 177 (280)
T ss_pred hHHHHHHHHHHHHHHHhhcCh--h----hccCCchhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544 778882 3 577543311 11122111 12233333444456676665445
Q ss_pred ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCC-C
Q 030366 74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPS-D 152 (178)
Q Consensus 74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~-~ 152 (178)
.+.+|+|.||+.|+||+|+++|+|++.+.....+..........+...... ...+..+..+....+.++++..|++ |
T Consensus 178 ~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~~~~l~~~~~~~~~~~~ 255 (280)
T TIGR01473 178 LALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTG--WLYLIVATLLGALFLYLAFKFYRDPTD 255 (280)
T ss_pred HHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 568999999999999999999999999876666544444333333322222 2233355666777888888888877 4
Q ss_pred hH-HHHHHHHHHH
Q 030366 153 NK-SAKSFYMLTW 164 (178)
Q Consensus 153 ~~-~~~~~y~fiw 164 (178)
++ +.+.|+.-.+
T Consensus 256 ~~~~~~~f~~s~~ 268 (280)
T TIGR01473 256 RKKARKLFKFSLI 268 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 33 3344444443
No 43
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.16 E-value=1.9e-09 Score=91.54 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 030366 56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHS 135 (178)
Q Consensus 56 ~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~ 135 (178)
.++.....++|....+..+.++|.|-||+.|+||+|+++|+|++.+.+...+.+.....+.........+ .....+..
T Consensus 169 ~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~ 246 (296)
T PRK04375 169 ALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL--LYLVVALL 246 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH
Confidence 3444455678888888888899999999999999999999999998776655444443333322221112 22222445
Q ss_pred HHHHHHHHhhhhCCCCChH-HHHHHHHHHH
Q 030366 136 ALAFVLWRQAKTNDPSDNK-SAKSFYMLTW 164 (178)
Q Consensus 136 i~~~~l~~~~~~vd~~~~~-~~~~~y~fiw 164 (178)
..+..+.++++..+++|++ ..+.|+.-.|
T Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~ 276 (296)
T PRK04375 247 LGAWFLYYAWRLYRKDDRKWARKLFRYSIN 276 (296)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHH
Confidence 5667777888888876654 3345554444
No 44
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.14 E-value=4.1e-09 Score=88.83 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366 55 PVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH 134 (178)
Q Consensus 55 ~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~ 134 (178)
..+.....+++|..+.....+.+|.|.|++.|+||+|+++|+|++.+.....+.+........+. ... ...+..+.
T Consensus 160 ~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~---g~~y~~~~ 235 (279)
T PRK12869 160 EAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYI---GLIGLILV 235 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cHHHHHHH
Confidence 33444455667888876667889999999999999999999999998877666554443332222 111 12344333
Q ss_pred HH-HHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHH
Q 030366 135 SA-LAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCV 169 (178)
Q Consensus 135 ~i-~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~ 169 (178)
.+ .+..+.++.+..+.+|+++ .+.+|.+.++|.
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~--~~~~f~~s~~~l 269 (279)
T PRK12869 236 AILSAALMATSIRALLNPTKEE--AWKMFKASSPYL 269 (279)
T ss_pred HHHHHHHHHHHHHHhhCCChHH--HHHHHHHHHHHH
Confidence 33 3334444444454443332 334444444444
No 45
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.03 E-value=9.6e-09 Score=87.27 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHH
Q 030366 58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGG 113 (178)
Q Consensus 58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 113 (178)
......++.+.+||+.||++| |||+++ .+|+|+++|+|+|.+++..+..++.+.
T Consensus 179 ~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 179 LLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence 333456788999999999999 899965 999999999999999998887655543
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.86 E-value=1.8e-07 Score=80.11 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=56.3
Q ss_pred HHHHhhCCCCCcccccchhhhhH---------HHHhccccc---chHHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 030366 20 VGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA---FTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGL 87 (178)
Q Consensus 20 lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~---~~~~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~ 87 (178)
....|+ .++||++...+ +.+.|.... .+...+......++|+...+...+++|.|.|++.|+
T Consensus 130 ~~~~Yt------~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~ 203 (306)
T PRK13362 130 YVGVYS------LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGI 203 (306)
T ss_pred HHHHHh------HHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCC
Confidence 355777 24888765443 333443221 233444455557789988888899999999999999
Q ss_pred cccceeeCHHHHHHHHHH
Q 030366 88 RTLPIIIGKEKVFSVAVN 105 (178)
Q Consensus 88 ~Tlpv~lG~~~a~~l~~~ 105 (178)
+|+|+++|+|++.+....
T Consensus 204 ~~lpv~~G~~~t~~~~~~ 221 (306)
T PRK13362 204 PVLPVARGIAKTKLHIVL 221 (306)
T ss_pred eeeceecChHHHHHHHHH
Confidence 999999999999985433
No 47
>PLN02776 prenyltransferase
Probab=98.04 E-value=0.00039 Score=60.49 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceee--CHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366 57 LFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIII--GKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH 134 (178)
Q Consensus 57 ~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~l--G~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~ 134 (178)
++.....++|...-...-..+|.|-|++.|++.+|+.- |++.++.+....+.+..+.++........ ..++..+.
T Consensus 154 ~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~---~~~~~~a~ 230 (341)
T PLN02776 154 MVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTS---SPFALEAA 230 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHH
Confidence 33333455777643445556777789999999999865 57777777766665555444433322222 23566777
Q ss_pred HHHHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHH
Q 030366 135 SALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCV 169 (178)
Q Consensus 135 ~i~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~ 169 (178)
.+.+..+.+.++..+++|++. ...+|.+-+-|.
T Consensus 231 ~l~~~~l~~~~~~~~~~~~~~--ar~~F~~Sl~yL 263 (341)
T PLN02776 231 LLTAYLAASAASFYREPTNAN--ARKMFHGSLLYL 263 (341)
T ss_pred HHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHH
Confidence 777888999999997766542 233444444443
No 48
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.42 E-value=0.00062 Score=56.37 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQ 144 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~ 144 (178)
+-+-++..-|+-+|.|.||+.|+-|+++.+|+..+-.+...++.+.|..+...+.-+...+...+..+..+ .-+=.|
T Consensus 240 lnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lplltip~a---fqiek~ 316 (359)
T KOG4581|consen 240 LNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPLLTIPMA---FQIEKQ 316 (359)
T ss_pred cchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhchhH---HhHHHH
Confidence 45556778899999999999999999999999999999888888889988888877776554444333333 222222
Q ss_pred hhhCCC-CChHHHHHHHHHHHHHHHHHH
Q 030366 145 AKTNDP-SDNKSAKSFYMLTWKLYCVEF 171 (178)
Q Consensus 145 ~~~vd~-~~~~~~~~~y~fiw~lf~~~~ 171 (178)
-|.-.. +...+-++...|..+.||+-.
T Consensus 317 frneqa~~~lp~qtakln~~~gi~yv~~ 344 (359)
T KOG4581|consen 317 FRNEQAFHKLPQQTAKLNFFFGIFYVFA 344 (359)
T ss_pred hhhHhhhhhcchhhhhHHHHHHHHHHHH
Confidence 222111 112345667778888888644
No 49
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=97.09 E-value=0.0014 Score=55.48 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLW 142 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~ 142 (178)
...|+..-+.++.=||.+-|.+.|+++.+.++|++.-.++. ++-+.....+...|+.+...| .+..+..+.+.=+.
T Consensus 233 ~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~ 308 (353)
T KOG1381|consen 233 GVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLG 308 (353)
T ss_pred hhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHH
Confidence 45789889999999999999999999999999997766663 333333333344556665555 45555666677788
Q ss_pred HhhhhCCCCChHHH-HHHHHHHHH
Q 030366 143 RQAKTNDPSDNKSA-KSFYMLTWK 165 (178)
Q Consensus 143 ~~~~~vd~~~~~~~-~~~y~fiw~ 165 (178)
.+-..||.+|++.. +.|....|-
T Consensus 309 ~~i~~vdiDnp~dC~k~f~sN~nt 332 (353)
T KOG1381|consen 309 SQIYKVDIDNPSDCWKKFKSNSNT 332 (353)
T ss_pred hheeeeecCChHHHHHHHHhcCcc
Confidence 88889999998865 455555553
No 50
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=94.39 E-value=0.64 Score=38.83 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~ 110 (178)
.++...+-+++||+.|.|-|+++ +++=|..-| .+.++..+..+..++
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~ 95 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG 95 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 44566677899999999999998 677787777 455555554444333
No 51
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=93.29 E-value=0.92 Score=38.75 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcCC-cccce-eeCHHHHHHHHHHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI-IIGKEKVFSVAVNIMLMAYGGVV 115 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i 115 (178)
...+...+-+.+||.-|.|-|++.+. |.+|. ++.+|.+......+..++.+...
T Consensus 62 ~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~ 117 (306)
T TIGR02056 62 SGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAF 117 (306)
T ss_pred HHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34566667799999999999987763 33333 35566666666655555544333
No 52
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=93.05 E-value=1 Score=37.63 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 030366 59 TAAYLVIWNTAIAFVKDIPDVEGDKAFGL 87 (178)
Q Consensus 59 ~~~f~~l~~~~~~i~~di~DiegDr~~G~ 87 (178)
.....++...+...+||..|.|-|+.+..
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 33345567778889999999999987543
No 53
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=92.25 E-value=0.95 Score=38.71 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCCChHhhHhc---CCcccce-eeCHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAF---GLRTLPI-IIGKEKVFSVAVNIMLMAY 111 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~---G~~Tlpv-~lG~~~a~~l~~~l~~~~~ 111 (178)
++...+..++||+-|.|-||++ ..|.+|. ++..+.+...+..+..++.
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l 107 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASL 107 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 3445566799999999999996 2234443 3455666666555544443
No 54
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=92.20 E-value=1.2 Score=37.51 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcCC---cccceeeC-HHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFGL---RTLPIIIG-KEKVFSVAVNIM 107 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv~lG-~~~a~~l~~~l~ 107 (178)
..+....+..++||+.|.|-||++-. |.+|.--- +|.+..+...+.
T Consensus 55 ~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~ 104 (289)
T COG0382 55 AFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLL 104 (289)
T ss_pred HHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHH
Confidence 34566667789999999999999876 44444332 333444443333
No 55
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=7.9 Score=33.38 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.2
Q ss_pred hhHhcCCcccceeeCHHHHHHHHH
Q 030366 81 GDKAFGLRTLPIIIGKEKVFSVAV 104 (178)
Q Consensus 81 gDr~~G~~Tlpv~lG~~~a~~l~~ 104 (178)
-=++.|+--+|++-|++.+++-..
T Consensus 202 DY~~AgiPMlPvv~G~~~t~~~I~ 225 (304)
T COG0109 202 DYKAAGIPMLPVVKGERRTKRQIL 225 (304)
T ss_pred HHHHcCCCcccccccHHHHHHHHH
Confidence 347899999999999999987643
No 56
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=90.64 E-value=2.1 Score=34.47 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHHHHHHHHHccCCChHhhHhc-CCcccceeeCHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAF-GLRTLPIIIGKEK 98 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~-G~~Tlpv~lG~~~ 98 (178)
++.....+..||.-|.|-|+.+ +.+.=|..-|+-+
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 3566677899999999999996 3445555555444
No 57
>PRK08238 hypothetical protein; Validated
Probab=90.22 E-value=10 Score=34.56 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccccc-chHHHHHHHHHHHHHHHHHHHHccC
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA-FTKPVLFTAAYLVIWNTAIAFVKDI 76 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~-~~~~~~~~~~f~~l~~~~~~i~~di 76 (178)
++..+..++...++..+|| +++||.+.+.. ..+.|.... .+.+.|+.. +.+++....++.|..
T Consensus 294 ~~~~~~~~~~~~~~~~~Ys------~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~wll~-~~~~~~l~la~~KR~ 366 (479)
T PRK08238 294 GPAFLLVLLAYLALTLAYS------LRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFWLLA-FSMFFFLSLALVKRY 366 (479)
T ss_pred hHHHHHHHHHHHHHHHHhh------HHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHHhH
Confidence 3444444455566667777 25899886544 333443322 223334332 333445567799999
Q ss_pred CChHhhHhcCC
Q 030366 77 PDVEGDKAFGL 87 (178)
Q Consensus 77 ~DiegDr~~G~ 87 (178)
.|.+++++.|.
T Consensus 367 ~El~~~~~~~~ 377 (479)
T PRK08238 367 TELRRALQRGK 377 (479)
T ss_pred HHHHHHHhcCC
Confidence 99999999886
No 58
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=89.87 E-value=3.5 Score=35.34 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHH----HccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHH
Q 030366 65 IWNTAIAF----VKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIM 107 (178)
Q Consensus 65 l~~~~~~i----~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~ 107 (178)
+...+.++ +||..|.|-||.+ +++-|+.=| +|.++.+...+.
T Consensus 60 ~~~~~~nv~i~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~ 108 (308)
T PRK12887 60 IACLCGNVYIVGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITG 108 (308)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHH
Confidence 34444456 9999999999964 577776444 455544444333
No 59
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=89.71 E-value=3.5 Score=34.53 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMAY 111 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~ 111 (178)
.++...+-+++||+-|.|-||+.. ++=|+ ++-+|.+......+..++.
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 445666778999999999999763 34444 3455666666555544443
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=89.18 E-value=3.1 Score=34.74 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~ 110 (178)
.++...+-+++||.-|.|-|+++. ++=|..-| +|.+......+..++
T Consensus 47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 445566678999999999999754 55565555 555555555554443
No 61
>PRK13595 ubiA prenyltransferase; Provisional
Probab=89.01 E-value=5.8 Score=33.96 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHH
Q 030366 58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~ 110 (178)
....+..-.+...+.+||.-|.|-|+++-.+ =|. ++.++.++.+...+...+
T Consensus 51 l~~~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~~ 105 (292)
T PRK13595 51 LLLYLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLLN 105 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHHH
Confidence 3344555666788999999999999866543 333 455565555544444333
No 62
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=88.66 E-value=3.2 Score=35.25 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccceeeCH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIGK 96 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG~ 96 (178)
.++...+-..+||+.|.|-|++..+ ++=|..=|+
T Consensus 54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 3455556689999999999998755 466766674
No 63
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=88.65 E-value=3.8 Score=34.35 Aligned_cols=44 Identities=23% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcC---Ccccce-eeCHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFG---LRTLPI-IIGKEKVFSVAVN 105 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G---~~Tlpv-~lG~~~a~~l~~~ 105 (178)
..++...+-.++||..|.|-|++.. .|.+|. ++.+|.+......
T Consensus 44 ~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~ 91 (282)
T TIGR01475 44 AAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91 (282)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence 3456677778999999999999863 344444 4556666665543
No 64
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.16 E-value=2.8 Score=35.22 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIMLM 109 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~~~ 109 (178)
.++...+-+++||..|.|-|++..+ ++=|+.=| .|.+..+...+..+
T Consensus 54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 104 (285)
T PRK12847 54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLI 104 (285)
T ss_pred HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3455566689999999999987543 23444444 55555554444433
No 65
>PRK08238 hypothetical protein; Validated
Probab=87.86 E-value=6.1 Score=36.02 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccce---eeCHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI---IIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv---~lG~~~a~~l~~~l~~~~~~ 112 (178)
+++...+..++||+-|.|-||++-+ +.=|. ++..+.+..++..+..++..
T Consensus 235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~ 288 (479)
T PRK08238 235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA 288 (479)
T ss_pred HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456667789999999999999732 33343 34556666665555544443
No 66
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.70 E-value=6 Score=34.36 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHccCCChHhhHhcCCccccee---eCHHHHHHHHHHHHHHHHHHHHHH
Q 030366 70 IAFVKDIPDVEGDKAFGLRTLPII---IGKEKVFSVAVNIMLMAYGGVVLV 117 (178)
Q Consensus 70 ~~i~~di~DiegDr~~G~~Tlpv~---lG~~~a~~l~~~l~~~~~~~~i~~ 117 (178)
-.++||.-|.|-|+..+ +|=|+. +-+|.++.....+..++.+....+
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L 115 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWL 115 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999764 444444 446777777666665555433333
No 67
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=86.81 E-value=4.5 Score=34.03 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIM 107 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~ 107 (178)
.+...+-+.+||+.|.|-|++..+ +.=|+.=| ++.+......+.
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 97 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQL 97 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 345556689999999999986644 23444445 455555544443
No 68
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=86.72 E-value=5 Score=33.49 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIML 108 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~ 108 (178)
+...+-+++||.-|.|-|+.++ ++=|+.=| ++.+......+..
T Consensus 48 ~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (277)
T PRK12883 48 LGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA 93 (277)
T ss_pred HHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 3445668999999999999754 55566544 5566655544443
No 69
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.24 E-value=8.8 Score=33.93 Aligned_cols=45 Identities=20% Similarity=0.105 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIML 108 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~ 108 (178)
..+...+-+++||.-|.|-|++++ ++=|+.=| ++.+......+..
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHH
Confidence 334555678999999999998875 34444444 4555554434333
No 70
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=85.51 E-value=5.8 Score=33.98 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMAY 111 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~ 111 (178)
+...+-+++||.-|.|-||+++ ++=|+ ++.++.++.....+..++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 4556678999999999999754 33343 4566666666655554443
No 71
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=85.41 E-value=5.4 Score=34.13 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIM 107 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~ 107 (178)
.++...+-.++||+.|.|-||++.+ +.=|+.=| ++.+..+...+.
T Consensus 53 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~ 101 (294)
T PRK12873 53 GLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLL 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4456666689999999999998876 45565444 455555544443
No 72
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=85.22 E-value=5.6 Score=33.68 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCc-ccceeeC---HHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLR-TLPIIIG---KEKVFSVAVNIM 107 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~-Tlpv~lG---~~~a~~l~~~l~ 107 (178)
.++...+-.++||+.|.|-|++..+. .=|..=| ++.+..+...+.
T Consensus 55 ~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~ 103 (290)
T PRK12870 55 ALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVAL 103 (290)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 34556666899999999999865432 3444444 455544444443
No 73
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=85.05 E-value=8.2 Score=32.71 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.7
Q ss_pred HccCCChHhhHhcCCccc
Q 030366 73 VKDIPDVEGDKAFGLRTL 90 (178)
Q Consensus 73 ~~di~DiegDr~~G~~Tl 90 (178)
+||+-|.|.||.+.+|..
T Consensus 64 iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 64 VNDVFDADTDELNPKKDR 81 (282)
T ss_pred chhhhhhhccccCCCccC
Confidence 799999999999887763
No 74
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=84.71 E-value=3.9 Score=34.24 Aligned_cols=47 Identities=17% Similarity=0.014 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~ 110 (178)
..+...+-+.+||.-|.|-|++++ ++=|+ ++-+|.++.....+..++
T Consensus 47 ~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 47 GPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 335566678999999999999765 33343 344566666655444433
No 75
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=83.95 E-value=7.2 Score=32.76 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~ 110 (178)
..+...+-+++||+.|.|-|+++.+ |.+|. ++.++.+......+..++
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 3455666789999999999998654 55554 345666666555443333
No 76
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=83.01 E-value=8.4 Score=32.37 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=28.6
Q ss_pred HHHHHHHHHHccCCChHhhHhcCC-cccceee---CHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGL-RTLPIII---GKEKVFSVAVNIMLMA 110 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~l---G~~~a~~l~~~l~~~~ 110 (178)
++...+-+++||+.|.|-|++..+ +.=|+.= -++.+......+..++
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 345556689999999999986443 2334433 4455555554444433
No 77
>PLN02776 prenyltransferase
Probab=80.23 E-value=23 Score=30.95 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccce---eeCHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI---IIGKEKVFSVAVNIM 107 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv---~lG~~~a~~l~~~l~ 107 (178)
.++...+-..+||+.|.|-|++..+ +.=|+ ++..+.+..+...+.
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~ 86 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4455666689999999999988654 23333 345556655544443
No 78
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=79.96 E-value=13 Score=31.17 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~ 110 (178)
.++...+-+.+||.-|.|-|++..+ |.+|. ++-.|.+..++..+..++
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4455666689999999999997543 44433 445666666655554433
No 79
>PRK13591 ubiA prenyltransferase; Provisional
Probab=78.81 E-value=17 Score=31.42 Aligned_cols=28 Identities=14% Similarity=-0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHHHccCCChHhhHhcCCcccce
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPI 92 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv 92 (178)
.+.+.+.+++||.-|.|-|+.+ +...|.
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN-~P~r~~ 95 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVN-RSELIG 95 (307)
T ss_pred HHHHHHHHHHhhhccchhhhcc-Cccccc
Confidence 3566677899999999999885 444333
No 80
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=78.51 E-value=41 Score=28.70 Aligned_cols=30 Identities=27% Similarity=0.613 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH
Q 030366 7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA 42 (178)
Q Consensus 7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~ 42 (178)
+|.........++..++|| +++|+.|..++
T Consensus 114 ~~~~~~~~~~~~~~~~~Ys------~~lK~~~~~d~ 143 (295)
T PRK12324 114 SPKLALVLLVYLVLNLAYS------FKLKHQPVLDV 143 (295)
T ss_pred HHHHHHHHHHHHHHHHHhh------HHhcCCchhhH
Confidence 3444444455666777888 25899997655
No 81
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=77.26 E-value=14 Score=31.38 Aligned_cols=40 Identities=23% Similarity=0.030 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSV 102 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l 102 (178)
.++...+-..+||+.|.|-|++..+ +.=|+.=| .+.+...
T Consensus 51 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 51 MVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence 3455556679999999999997753 22366556 5555444
No 82
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=77.13 E-value=20 Score=30.74 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~ 110 (178)
.++...+-+.+||+.|.|-|++..+ |.+|. ++.++.+..+...+..++
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g 107 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG 107 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455667789999999999987644 44443 344566655555444333
No 83
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=76.27 E-value=19 Score=30.40 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIML 108 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~ 108 (178)
..+...+-+++||+.|.|-|++..+ |.+|. ++.+|.+......+..
T Consensus 53 ~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~ 102 (296)
T PRK04375 53 IALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGV 102 (296)
T ss_pred HHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 3455556689999999999998543 44443 3456666666544443
No 84
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=75.98 E-value=48 Score=28.07 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHccCCChHh--hHhcCCcccceeeC-HHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEG--DKAFGLRTLPIIIG-KEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Dieg--Dr~~G~~Tlpv~lG-~~~a~~l~~~l~~~~~~ 112 (178)
..+.-.+.+..||..|.+- |+++ .++..-..| +|..++....+..++.+
T Consensus 44 ~l~~q~~~N~~Ndy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~ia~~ 95 (285)
T TIGR02235 44 AILILAWINLTNDVFDSDTGIDRFK-LHSIVNLTGSRSLVFWLANFFLLIGLV 95 (285)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCccc-cCCcccccCcHHHHHHHHHHHHHHHHH
Confidence 4456667799999999877 7642 222222222 34444444444444444
No 85
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.40 E-value=16 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCc-ccceeeC---HHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLR-TLPIIIG---KEKVFSVAVN 105 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~-Tlpv~lG---~~~a~~l~~~ 105 (178)
.++...+-+++||+.|.|-|++..+. .=|+.=| .+.+......
T Consensus 81 ~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~ 127 (314)
T PRK12878 81 AIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVL 127 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 44566666899999999999864321 2333334 5555444333
No 86
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=75.14 E-value=1.9 Score=34.54 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHccCCChHhhH----------hcCCcccceeeCHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDK----------AFGLRTLPIIIGKEKVFSVAVN 105 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr----------~~G~~Tlpv~lG~~~a~~l~~~ 105 (178)
.--+..+..+.+|++|+.+|. +.|+.|+|.....+.....+.-
T Consensus 155 ~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~~~ 207 (236)
T cd00867 155 GRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYAEE 207 (236)
T ss_pred HHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 345566778999999999988 8999999999985555554433
No 87
>PRK10581 geranyltranstransferase; Provisional
Probab=73.08 E-value=2.3 Score=36.36 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVFSVAVNIML 108 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~~l~~~l~~ 108 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+|.+.+...+.-...
T Consensus 210 ~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 210 RYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445667778899999998655 56799999999999999887665543
No 88
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=73.07 E-value=21 Score=30.15 Aligned_cols=41 Identities=22% Similarity=0.045 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHccCCChHhhHhcC---Ccccce-eeCHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFG---LRTLPI-IIGKEKVFSVA 103 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G---~~Tlpv-~lG~~~a~~l~ 103 (178)
+++...+-..+||+.|.|-|++.. -|.+|. ++-.|.+....
T Consensus 48 ~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~ 92 (284)
T PRK12888 48 MVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGA 92 (284)
T ss_pred HHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 445555668999999999999875 343433 23344444443
No 89
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=70.72 E-value=29 Score=29.82 Aligned_cols=41 Identities=15% Similarity=-0.050 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC-cccceeeCH---HHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIGK---EKVFSVA 103 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG~---~~a~~l~ 103 (178)
++..-.+-..+||+-|.|-|+++-+ ++=|..=|+ +.+....
T Consensus 56 ~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~ 100 (300)
T PRK12876 56 FFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLL 100 (300)
T ss_pred HHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 3344445579999999999998874 344444454 4444444
No 90
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=70.18 E-value=33 Score=29.31 Aligned_cols=41 Identities=22% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---ccccee-eCHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPII-IGKEKVFSVA 103 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv~-lG~~~a~~l~ 103 (178)
.++...+-..+||+.|.|-|++.-+ |.+|.- +-++.+..+.
T Consensus 58 ~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 58 LFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 4455666689999999999998732 333332 3445555443
No 91
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=70.11 E-value=31 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHccCCChHhhHhc-----CC-----cccce---eeCHHHHHHHHHHHHHHHHH
Q 030366 70 IAFVKDIPDVEGDKAF-----GL-----RTLPI---IIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 70 ~~i~~di~DiegDr~~-----G~-----~Tlpv---~lG~~~a~~l~~~l~~~~~~ 112 (178)
-.++||.-|.|-|+++ ++ ++=|+ ++-+|.+..+...+..++.+
T Consensus 57 g~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~ 112 (297)
T PRK12871 57 GFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSA 112 (297)
T ss_pred HHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3699999999999753 21 23343 44556666665555444433
No 92
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=69.62 E-value=37 Score=28.77 Aligned_cols=41 Identities=15% Similarity=-0.074 Sum_probs=24.8
Q ss_pred HHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVN 105 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~ 105 (178)
+...+-..+||.-|.|=|++..+ |.+|. ++-++.+......
T Consensus 58 l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~ 102 (291)
T PRK12874 58 SARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVL 102 (291)
T ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 34445578999999999998853 43333 2334445444333
No 93
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=68.23 E-value=77 Score=27.15 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHccCCChH--hhHhcCCcccceee-CHHHHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVE--GDKAFGLRTLPIII-GKEKVFSVAVNIMLMAYGGVV 115 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Die--gDr~~G~~Tlpv~l-G~~~a~~l~~~l~~~~~~~~i 115 (178)
..+.-.+-+..||..|.+ -|++. .+..+-.. .+|..++.+..+..++.+..+
T Consensus 57 ~~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl 111 (304)
T PRK07419 57 AILILAWENLSNDVFDADTGIDKNK-FHSVVNLTGNKSLVFWLANLFLLLGLLGIL 111 (304)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc-ccCcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 445666779999999988 57642 11222211 355666666666555544333
No 94
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=66.78 E-value=46 Score=28.22 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=15.9
Q ss_pred HHHccCCChHhhHhcCCcccc
Q 030366 71 AFVKDIPDVEGDKAFGLRTLP 91 (178)
Q Consensus 71 ~i~~di~DiegDr~~G~~Tlp 91 (178)
+-+||.-|.|-|+++.+|.=|
T Consensus 51 ~~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 51 YGINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred HhhhhhhhhhcCCCCcccCCC
Confidence 344999999999888666544
No 95
>PLN02922 prenyltransferase
Probab=62.58 E-value=1e+02 Score=26.53 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHccCCChHh--hHhcCCcccceee-CHHHHHHHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG--DKAFGLRTLPIII-GKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg--Dr~~G~~Tlpv~l-G~~~a~~l~~~l~~~~~~ 112 (178)
...+.-.+.+..||..|.+- |++. .++..-.. -+|..++....++.++.+
T Consensus 59 ~~~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~s~~~v~~~~~~~~~la~~ 111 (315)
T PLN02922 59 SSVLVITWLNLSNDAYDADTGVDKNK-KESVVNLVGSRRGVLAAAIGCLALGAA 111 (315)
T ss_pred HHHHHHHHHHHHhhhhHhccCcCccc-CCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 34566667799999999776 4322 22211222 444444555555544443
No 96
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=62.34 E-value=61 Score=27.54 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~ 110 (178)
+++...+-..+||+-|.|-|++.-+ |-+|. ++-.+.+......+..++
T Consensus 46 ~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~ 97 (286)
T PRK12895 46 AVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIF 97 (286)
T ss_pred HHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3355555679999999999988732 22332 345566666555444333
No 97
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=58.13 E-value=1.1e+02 Score=25.52 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHccCCChHh--hHh---cCCcccce-eeCHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEG--DKA---FGLRTLPI-IIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Dieg--Dr~---~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~ 112 (178)
..+...+.+.+||.-|.|- |++ .+.|++|- ++-+|.+......+..++.+
T Consensus 47 ~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~ 102 (293)
T PRK06080 47 ALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAAL 102 (293)
T ss_pred HHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455667789999999953 532 22233332 23366666666555555444
No 98
>PRK13592 ubiA prenyltransferase; Provisional
Probab=56.64 E-value=1.2e+02 Score=26.06 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHccCCChHhhHhcC-Ccccce-eeCHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFG-LRTLPI-IIGKEKVFSVAVNIM 107 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G-~~Tlpv-~lG~~~a~~l~~~l~ 107 (178)
+++.+.+-+++||..|.|=||.+. -|-+|- +.-+|.++..+..+.
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~ 101 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIV 101 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 446667778999999999998753 233443 334555565554543
No 99
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=56.16 E-value=1.2e+02 Score=25.52 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcc----cce---eeCHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRT----LPI---IIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~T----lpv---~lG~~~a~~l~~~l~~~~~~ 112 (178)
..+...+-+.+||..|.|-|++...|| =|+ ++-+|.++..+..+..++..
T Consensus 49 ~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~ 105 (296)
T PRK05951 49 YFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQ 105 (296)
T ss_pred HHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 445666778999999966665554222 223 24567777776665555544
No 100
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.01 E-value=47 Score=24.16 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhHHHHhcccccchHHHHHHHHHHHHHHHHHHHHccCCChHhhHh
Q 030366 5 LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKA 84 (178)
Q Consensus 5 ~~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~~~~G~~~~~~~~~~~~~~f~~l~~~~~~i~~di~DiegDr~ 84 (178)
.|||+.+....+.+.++...|...+.+.++-..|+.--..++.. .....+.+.+++=.|.--+|=...+-|.+
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~-------~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~ 73 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSL-------EAAYQAPLILMSQNRQAARDRLRAELDYQ 73 (108)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHH-------HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 47999888888888889999964331235566675433222211 11111222234434444455555555655
Q ss_pred cCCc
Q 030366 85 FGLR 88 (178)
Q Consensus 85 ~G~~ 88 (178)
.+.+
T Consensus 74 inl~ 77 (108)
T PF06210_consen 74 INLK 77 (108)
T ss_pred HHHH
Confidence 5444
No 101
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=48.07 E-value=6.8 Score=33.74 Aligned_cols=40 Identities=33% Similarity=0.401 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVFS 101 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~~ 101 (178)
|.--...++.+..|+.|+.|| .+.|+.|+|+.+|.+++..
T Consensus 202 ~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 202 YGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 344566678899999999995 4558899999999997766
No 102
>COG4420 Predicted membrane protein [Function unknown]
Probab=47.59 E-value=34 Score=27.52 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=54.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhCC-CCCcccccchhhhhHHHHhcccccchHHHHHHHHHHHHHHHHHHHHccCCChH
Q 030366 2 GIMLRSPPLVIGFIIWCIVGGAYSID-LPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVE 80 (178)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~lg~~Ys~~-lp~plrlK~~p~~~~~~~~G~~~~~~~~~~~~~~f~~l~~~~~~i~~di~Die 80 (178)
+.+.|||..++...+.++++..-|.. .| ...|-..|++--..+++..+ ...+.+.+++=.|.--+|=.+.+
T Consensus 52 a~f~Gsw~fil~~~~~ll~Wi~lNl~~~~-~~~wDpyPFi~LnLllS~~A-------aiqAp~IlmSQNRQa~rDr~~a~ 123 (191)
T COG4420 52 ARFGGSWAFILTFTLLLLLWIVLNLFLVP-GLAWDPYPFILLNLLLSTLA-------AIQAPLILMSQNRQAERDRLRAE 123 (191)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHhhhc-CCcCCCccHHHHHHHHHHHH-------HHHHhHHHHHHhHHHHHHHHHHH
Confidence 34678999888888888889888865 44 46677788755434443222 12223445666777888888888
Q ss_pred hhHhcCCcc
Q 030366 81 GDKAFGLRT 89 (178)
Q Consensus 81 gDr~~G~~T 89 (178)
-|++.+.+|
T Consensus 124 ~d~qvnlka 132 (191)
T COG4420 124 LDYQVNLKA 132 (191)
T ss_pred HHHHHHHHH
Confidence 888887665
No 103
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=47.40 E-value=34 Score=26.91 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred ceeeCHHHHHHHHHHHH-----HHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhCCCCCh
Q 030366 91 PIIIGKEKVFSVAVNIM-----LMAYGGVVLVGAFSPSVLCK-LVTMISHSALAFVLWRQAKTNDPSDN 153 (178)
Q Consensus 91 pv~lG~~~a~~l~~~l~-----~~~~~~~i~~~~~~~~~~~~-~~~~~g~~i~~~~l~~~~~~vd~~~~ 153 (178)
|.++|++.++|+..+-. +++.++.++.+..++....- ..-..+..+....+-.-.++.||=++
T Consensus 39 P~~LGdetaRwI~VGNcLHKTAVlsGl~~l~~~~~~~~~~~~~~~p~g~lSv~ca~lY~vsWq~DPCck 107 (165)
T PF14972_consen 39 PTRLGDETARWIAVGNCLHKTAVLSGLASLITGLLWPDRPNYISLPLGGLSVACAGLYTVSWQFDPCCK 107 (165)
T ss_pred CccccHHHHHHHHhhhhHhHHHHHhhhHHHHhhhhcccccceeeecHHHHHHHHHHHHhcccccCCCee
Confidence 78999999999977642 23444444444554432211 11233344555666666677777443
No 104
>PLN02878 homogentisate phytyltransferase
Probab=46.23 E-value=1.3e+02 Score=25.75 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=27.7
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCH---HHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGK---EKVFSVAVNIM 107 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~---~~a~~l~~~l~ 107 (178)
+.+.-+-=+||+.|+|=|| .|+-..|+-=|+ |.+..++..+.
T Consensus 34 ~~niyivglNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~~~~ 78 (280)
T PLN02878 34 LMNIYIVGLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVTSFA 78 (280)
T ss_pred hhhhheechhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3333334589999999996 557888887774 44544444443
No 105
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=42.94 E-value=2e+02 Score=24.20 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHccCCChHh-----hHhcCCcccce-eeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEG-----DKAFGLRTLPI-IIGKEKVFSVAVNIMLMAYGGVVLVG 118 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Dieg-----Dr~~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~~~ 118 (178)
..+...+.++.||..|.+- ||..+.|.++- .+-.|.++..+..++.++.+..+.+.
T Consensus 37 ~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~ 98 (284)
T TIGR00751 37 AVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLA 98 (284)
T ss_pred HHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667799999999844 44444555443 23456777776666655554434333
No 106
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=41.39 E-value=9.6 Score=31.46 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAV 104 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~ 104 (178)
-|..-+..+..+.+|+.|..+ |.+.|+.|+|+.++.+++..-..
T Consensus 173 ~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~ 227 (260)
T PF00348_consen 173 EFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELR 227 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHH
Confidence 344456667789999999886 45689999999999888655433
No 107
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=41.11 E-value=1.5e+02 Score=22.15 Aligned_cols=27 Identities=7% Similarity=0.378 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhhCCCCChHHHHHHHH
Q 030366 131 MISHSALAFVLWRQAKTNDPSDNKSAKSFYM 161 (178)
Q Consensus 131 ~~g~~i~~~~l~~~~~~vd~~~~~~~~~~y~ 161 (178)
.+.++..+....+|++ +.++-.++||+
T Consensus 49 ~LPn~~Fa~~aF~~~~----~~~~~~~sFy~ 75 (126)
T PRK06099 49 FLPFCLFVYWIFFRKQ----KNSSKLTAFYR 75 (126)
T ss_pred HHhHHHHHHHHHHhcc----chHHHHHHHHH
Confidence 3445555555555443 55556788885
No 108
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=41.03 E-value=1.1e+02 Score=26.31 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 030366 158 SFYMLTWKLYCV 169 (178)
Q Consensus 158 ~~y~fiw~lf~~ 169 (178)
=||.|.|.||++
T Consensus 178 ~FYlf~~lnFFl 189 (296)
T PF10361_consen 178 VFYLFAWLNFFL 189 (296)
T ss_pred HHHHHHHHHHHe
Confidence 389999999975
No 109
>CHL00151 preA prenyl transferase; Reviewed
Probab=39.15 E-value=12 Score=32.13 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..+..+..|+.|..| |.+.|+.|+|+.++.+.
T Consensus 202 ~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 202 LYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 334456667789999999876 56789999999998654
No 110
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=38.05 E-value=12 Score=32.06 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
|.--+..+..+..|+.|+.| |.+.|+.|+|+.+..+.
T Consensus 198 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 198 FGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 34456667789999999864 56789999999998754
No 111
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=37.24 E-value=15 Score=30.33 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeC
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIG 95 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG 95 (178)
+..-+..+..+.+|+.|..+ |.+.|+.|+|+.++
T Consensus 177 ~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 177 FGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
No 112
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=35.84 E-value=12 Score=28.68 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCCChHhhHhc--CCcccceeeCHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAF--GLRTLPIIIGKEK 98 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~--G~~Tlpv~lG~~~ 98 (178)
.......+.||++|.++|.+. |+.|+|..+-.+.
T Consensus 151 ~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 151 ALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 345566799999999999998 7889998765543
No 113
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=35.01 E-value=2.9e+02 Score=23.65 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=33.4
Q ss_pred HHHHHHHHHHccCCChHhhHhc-----CCcccc-eeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAF-----GLRTLP-IIIGKEKVFSVAVNIMLMAYGGVVLVG 118 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~-----G~~Tlp-v~lG~~~a~~l~~~l~~~~~~~~i~~~ 118 (178)
.+...+-+..||..|.+-|... +.|+++ -.+-+|++++....+..++.+..+.+.
T Consensus 49 ~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~ 109 (317)
T PRK13387 49 LAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLC 109 (317)
T ss_pred HHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677999999998775554 223232 233456777777666666655444443
No 114
>PRK10133 L-fucose transporter; Provisional
Probab=33.69 E-value=3.3e+02 Score=23.88 Aligned_cols=20 Identities=0% Similarity=-0.032 Sum_probs=15.1
Q ss_pred eeCHHHHHHHHHHHHHHHHH
Q 030366 93 IIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 93 ~lG~~~a~~l~~~l~~~~~~ 112 (178)
++|+|++......+..++.+
T Consensus 87 r~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 87 KLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HhCcHHHHHHHHHHHHHHHH
Confidence 56999998888777766554
No 115
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=33.06 E-value=1.8e+02 Score=24.94 Aligned_cols=47 Identities=19% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-.+..+-.|+.|-. |.++|..|.-..+|.+.|....-.++.-++-
T Consensus 78 liH~asLiHDDiiD~s-~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~ 124 (322)
T TIGR02749 78 MIHTASLVHDDVIDES-DTRRGIETVHSLFGTRVAVLAGDFLFAQASW 124 (322)
T ss_pred HHHHHHHHHcccccCc-cccCCCccHHHHhCcHHHHHHHHHHHHHHHH
Confidence 4555667889998865 8889999999999999999887777665544
No 116
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=32.59 E-value=25 Score=30.28 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..+..+..|+.|..| |.+.|+.|+|+.+..+.
T Consensus 201 ~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~ 249 (322)
T TIGR02749 201 EYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEE 249 (322)
T ss_pred HHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhc
Confidence 334456677789999999764 56789999999988653
No 117
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=30.24 E-value=3e+02 Score=22.50 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=11.2
Q ss_pred eeCHHHHHHHHHHHHHHHH
Q 030366 93 IIGKEKVFSVAVNIMLMAY 111 (178)
Q Consensus 93 ~lG~~~a~~l~~~l~~~~~ 111 (178)
++|+|+...+...+..++.
T Consensus 63 r~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HhCchHHHHHHHHHHHHHH
Confidence 3577777766655554443
No 118
>PLN02890 geranyl diphosphate synthase
Probab=28.89 E-value=21 Score=32.16 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHhh-----------HhcCCcccceee
Q 030366 62 YLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIII 94 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~l 94 (178)
|.--+..+..+..|+.|..|| .+.|+.|+|+.+
T Consensus 296 fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~ 339 (422)
T PLN02890 296 YGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILF 339 (422)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHH
No 119
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=27.60 E-value=3.3e+02 Score=22.03 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=10.2
Q ss_pred eCHHHHHHHHHHHHHHHH
Q 030366 94 IGKEKVFSVAVNIMLMAY 111 (178)
Q Consensus 94 lG~~~a~~l~~~l~~~~~ 111 (178)
+|+|+...+...+..++.
T Consensus 65 ~G~r~~~~~~~~~~~~~~ 82 (377)
T TIGR00890 65 FGPRAVAMLGGILYGLGF 82 (377)
T ss_pred cCccchhHHhHHHHHHHH
Confidence 666777666555544433
No 120
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=26.28 E-value=3.9e+02 Score=23.11 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHccCCChH------hhHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVE------GDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Die------gDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
..++....+..||-.|.+ ||-..+-+.+-++=+.|+...+...+...+
T Consensus 53 ~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~ 106 (303)
T COG1575 53 AILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLA 106 (303)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHH
Confidence 335555667888887654 334455556666666666665544443333
No 121
>PLN02857 octaprenyl-diphosphate synthase
Probab=25.31 E-value=69 Score=28.80 Aligned_cols=38 Identities=34% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKE 97 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~ 97 (178)
.-|.--+..+..+..|+.|..| |.+.|+.|+|+.+-.+
T Consensus 294 ~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~ 342 (416)
T PLN02857 294 YEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 342 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHh
Confidence 3344456777889999999875 4568999999988544
No 122
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.09 E-value=2.2e+02 Score=19.16 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHH
Q 030366 95 GKEKVFSVAVNIMLMAYGGVVLVGAFSPS-VLCKLVTMISHSALAFVLW 142 (178)
Q Consensus 95 G~~~a~~l~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~g~~i~~~~l~ 142 (178)
|.|.+-++...++.++.+...+.|..... ......+..|.++.+.+..
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 77888888888887777777777766543 2222334445554444444
No 123
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=24.13 E-value=3.7e+02 Score=21.43 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 030366 56 VLFTAAYLVIWN 67 (178)
Q Consensus 56 ~~~~~~f~~l~~ 67 (178)
-|+...+..+..
T Consensus 76 dW~lT~Plll~~ 87 (222)
T PF01036_consen 76 DWLLTTPLLLLA 87 (222)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 466666654343
No 124
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=23.75 E-value=94 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-.+..+-.|+.|-. |.++|..|+-..+|.+.+....-.++..++-
T Consensus 74 liH~asLiHDDI~D~s-~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~ 120 (319)
T TIGR02748 74 LIHMASLVHDDVIDDA-DLRRGRPTIKSKWGNRIAMYTGDYLFAKSLE 120 (319)
T ss_pred HHHHHHHHhccccCCC-CCCCCCcCHHHHhChHHHHHHHHHHHHHHHH
Confidence 5555677899998866 6777999999999999998887777655443
No 125
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=21.38 E-value=3.3e+02 Score=19.72 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=17.4
Q ss_pred HHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHH
Q 030366 71 AFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIM 107 (178)
Q Consensus 71 ~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~ 107 (178)
-.-+.++|+..|.+. .+..+|.+++....+.
T Consensus 43 ~~~~~v~~v~eDER~------~~I~ekAs~~Tl~V~~ 73 (111)
T PF09946_consen 43 LYRRRVEDVVEDERT------ERISEKASRRTLQVFI 73 (111)
T ss_pred HHHHhcCcchhhHHH------HHHHHHHHHHHHHHHH
Confidence 345677776666443 3556666666544443
No 126
>PRK11383 hypothetical protein; Provisional
Probab=21.10 E-value=3.9e+02 Score=20.56 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCChHhhH
Q 030366 53 TKPVLFTAAYLVIWNTAIAFVKDIPDVEGDK 83 (178)
Q Consensus 53 ~~~~~~~~~f~~l~~~~~~i~~di~DiegDr 83 (178)
++..+....|+...-.++.+-|++||.+.++
T Consensus 102 sEKGfY~~af~lsLFgai~vQKn~RD~~~~~ 132 (145)
T PRK11383 102 SEKGFYGLAFFLSLFGAVAVQKNIRDAGINP 132 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3444555555444445788999999996544
No 127
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=20.11 E-value=2.9e+02 Score=22.61 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+=++-.+..+..|+.|-. +.++|..|.-.++|.+.+....-.++..++-
T Consensus 42 vEliH~asLIhDDI~D~s-~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~ 90 (260)
T PF00348_consen 42 VELIHAASLIHDDIIDNS-DLRRGKPTVHKKFGNAIAILAGDYLLALAFE 90 (260)
T ss_dssp HHHHHHHHHHHHHHHTTC-SEETTEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccc-ccCCCCccccccccccchhhhchHHHHHHHH
Confidence 445666778899998765 6788999999999999999998888766665
Done!