Query 030366
Match_columns 178
No_of_seqs 192 out of 807
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 80.5 1.1 3.9E-05 37.0 3.2 50 61-110 203-263 (297)
2 3lsn_A Geranyltranstransferase 76.6 0.66 2.3E-05 38.5 0.7 51 60-110 209-270 (304)
3 3lom_A Geranyltranstransferase 76.2 1.1 3.9E-05 37.3 2.0 49 61-109 217-276 (313)
4 3ts7_A Geranyltranstransferase 75.7 0.64 2.2E-05 39.0 0.4 51 60-110 215-276 (324)
5 3kra_B Geranyl diphosphate syn 72.6 9.4 0.00032 30.9 6.7 48 65-112 71-118 (274)
6 4f62_A Geranyltranstransferase 72.5 0.74 2.5E-05 38.5 -0.0 51 60-110 208-269 (317)
7 3p8r_A Geranyltranstransferase 72.0 0.8 2.7E-05 38.0 0.1 48 61-108 216-274 (302)
8 3llw_A Geranyltranstransferase 71.9 1.3 4.6E-05 36.8 1.4 50 60-109 216-274 (311)
9 3p8l_A Geranyltranstransferase 70.5 0.93 3.2E-05 37.6 0.1 50 61-110 213-273 (302)
10 2h8o_A Geranyltranstransferase 70.0 1 3.6E-05 37.8 0.3 48 61-108 249-307 (335)
11 3uca_A Geranyltranstransferase 69.4 1.5 5.1E-05 36.8 1.1 50 61-110 238-298 (324)
12 3pde_A Farnesyl-diphosphate sy 68.2 2.4 8.3E-05 35.2 2.2 52 61-112 212-274 (309)
13 2j1p_A Geranylgeranyl pyrophos 66.8 1.2 4.2E-05 36.6 0.1 45 60-107 219-263 (293)
14 1rtr_A Geranyltranstransferase 66.1 1.3 4.6E-05 36.5 0.2 50 61-110 205-265 (301)
15 1rqj_A Geranyltranstransferase 66.0 1.5 5.3E-05 36.0 0.6 49 61-109 210-269 (299)
16 3npk_A Geranyltranstransferase 58.4 3.7 0.00013 33.7 1.6 48 61-108 202-258 (291)
17 3qkc_B Geranyl diphosphate syn 48.1 56 0.0019 26.2 7.1 46 65-112 76-121 (273)
18 3ipi_A Geranyltranstransferase 45.4 5.7 0.0002 32.6 0.7 48 60-107 193-253 (295)
19 3oyr_A Trans-isoprenyl diphosp 45.0 5.1 0.00017 33.7 0.3 39 60-98 218-267 (345)
20 3aqb_B Component B of hexapren 43.1 5.2 0.00018 33.2 0.1 40 61-100 198-248 (325)
21 2e8v_A Geranylgeranyl pyrophos 42.6 5.3 0.00018 33.4 0.0 39 62-100 202-251 (340)
22 3lk5_A Geranylgeranyl pyrophos 39.9 6.3 0.00021 33.6 0.1 39 61-99 244-293 (380)
23 1v4e_A Octoprenyl-diphosphate 39.0 4 0.00014 33.6 -1.2 40 62-101 192-241 (299)
24 3mzv_A Decaprenyl diphosphate 36.8 5.7 0.0002 33.3 -0.6 39 61-99 207-256 (341)
25 2qis_A Farnesyl pyrophosphate 36.2 4.6 0.00016 34.3 -1.3 39 61-99 251-299 (374)
26 3pko_A Geranylgeranyl pyrophos 35.7 5.6 0.00019 33.2 -0.9 39 61-99 211-260 (334)
27 1uby_A FPS, farnesyl diphospha 33.5 4.6 0.00016 34.2 -1.8 39 61-99 244-292 (367)
28 2q80_A Geranylgeranyl pyrophos 32.1 8.1 0.00028 31.7 -0.5 35 64-98 179-224 (301)
29 1wmw_A Geranylgeranyl diphosph 32.0 7.1 0.00024 32.4 -0.8 41 59-99 197-247 (330)
30 3rmg_A Octaprenyl-diphosphate 31.8 12 0.00041 31.1 0.6 38 62-99 202-249 (334)
31 1wy0_A Geranylgeranyl pyrophos 31.5 9.4 0.00032 31.8 -0.2 38 61-98 205-253 (342)
32 3tc1_A Octaprenyl pyrophosphat 31.3 7.3 0.00025 32.3 -0.9 37 62-98 188-235 (315)
33 2ihi_A Pyrophosphate synthase; 31.3 4.9 0.00017 34.4 -2.0 39 61-99 273-321 (395)
34 1yhl_A Farnesyl pyrophosphate 31.1 6.2 0.00021 33.2 -1.4 39 61-99 237-285 (362)
35 3m0g_A Farnesyl diphosphate sy 30.9 77 0.0026 25.7 5.3 49 64-112 71-120 (297)
36 3nf2_A Putative polyprenyl syn 30.7 10 0.00034 31.9 -0.1 38 61-98 211-259 (352)
37 4dhd_A Polyprenyl synthetase; 30.4 9.3 0.00032 32.2 -0.4 38 61-98 212-261 (358)
38 3lmd_A Geranylgeranyl pyrophos 30.1 7.6 0.00026 32.8 -1.0 39 60-98 226-275 (360)
39 4f62_A Geranyltranstransferase 28.4 92 0.0031 25.6 5.4 49 64-112 75-124 (317)
40 2azj_A Geranylgeranyl pyrophos 28.2 9.6 0.00033 31.1 -0.7 39 61-99 195-240 (289)
41 3dyh_A Farnesyl pyrophosphate 28.0 9.5 0.00033 32.5 -0.7 38 61-98 265-312 (390)
42 3tc1_A Octaprenyl pyrophosphat 27.1 97 0.0033 25.4 5.3 48 64-112 67-114 (315)
43 3uca_A Geranyltranstransferase 27.1 88 0.003 25.8 5.1 48 65-112 105-153 (324)
44 2ftz_A Geranyltranstransferase 26.9 17 0.00058 29.6 0.6 40 62-103 201-251 (284)
45 1rqj_A Geranyltranstransferase 26.3 98 0.0033 25.0 5.2 48 65-112 75-123 (299)
46 3p8r_A Geranyltranstransferase 25.7 1E+02 0.0035 25.0 5.2 48 65-112 81-129 (302)
47 3apz_A Geranyl diphosphate syn 25.6 14 0.00048 30.8 -0.1 38 61-98 221-269 (348)
48 3mav_A Farnesyl pyrophosphate 25.2 8.6 0.00029 32.7 -1.5 38 62-99 274-321 (395)
49 2her_A Fragment, farnesyl pyro 25.2 8.6 0.00029 32.7 -1.5 37 63-99 243-285 (368)
50 3lom_A Geranyltranstransferase 24.7 1E+02 0.0036 25.2 5.1 49 64-112 80-129 (313)
51 1cmk_I CAMP-dependent protein 24.3 19 0.00065 18.8 0.3 9 74-82 16-24 (26)
52 2q58_A Fragment, farnesyl pyro 22.5 11 0.00036 31.9 -1.5 35 65-99 245-285 (368)
53 3apz_A Geranyl diphosphate syn 22.5 2.1E+02 0.0072 23.4 6.6 47 65-112 98-144 (348)
54 3oyr_A Trans-isoprenyl diphosp 22.2 1.1E+02 0.0036 25.5 4.7 47 65-112 96-142 (345)
55 3lsn_A Geranyltranstransferase 21.5 1.2E+02 0.0043 24.6 4.9 48 65-112 75-123 (304)
56 3lmd_A Geranylgeranyl pyrophos 21.4 1.3E+02 0.0046 25.0 5.2 48 64-112 105-152 (360)
57 2wdq_C Succinate dehydrogenase 21.3 2.1E+02 0.0073 19.9 5.8 49 62-116 75-123 (129)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=80.51 E-value=1.1 Score=36.97 Aligned_cols=50 Identities=30% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus 203 ~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 203 AYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677789999999987 45689999999999999998877765433
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=76.64 E-value=0.66 Score=38.51 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
.-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus 209 ~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 209 QTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777889999999987 45779999999999999998877765433
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=76.15 E-value=1.1 Score=37.26 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLM 109 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~ 109 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-
T Consensus 217 ~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~ 276 (313)
T 3lom_A 217 TYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQI 276 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 344456677789999999877 5578999999999999999887776543
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=75.69 E-value=0.64 Score=39.01 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
.-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus 215 ~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 276 (324)
T 3ts7_A 215 DHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAA 276 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777889999999876 56789999999999999998877765433
No 5
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=72.61 E-value=9.4 Score=30.91 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
++-++..+-.|+++.+.|..+|..|.-.++|.+.+....-.++..++-
T Consensus 71 liH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 71 LVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 455567789999944446679999999999999988887777766654
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=72.47 E-value=0.74 Score=38.51 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
.-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.++++..+.-...-+
T Consensus 208 ~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 208 DAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677889999999866 55679999999999999999887765433
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=71.99 E-value=0.8 Score=37.95 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIML 108 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~ 108 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.++++..+.-...
T Consensus 216 ~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~ 274 (302)
T 3p8r_A 216 RYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQ 274 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 344456677789999999876 457899999999999999988776654
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=71.92 E-value=1.3 Score=36.78 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHccCCChHhhH---------hcCCcccceeeCHHHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEGDK---------AFGLRTLPIIIGKEKVFSVAVNIMLM 109 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~DiegDr---------~~G~~Tlpv~lG~~~a~~l~~~l~~~ 109 (178)
.-|.--+..+..+..|+.|+.||. +.|+.|+|+.+|.+++.....-++--
T Consensus 216 ~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~ 274 (311)
T 3llw_A 216 QAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTE 274 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 334556677788999999998876 57999999999999998887766543
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=70.49 E-value=0.93 Score=37.59 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus 213 ~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A 273 (302)
T 3p8l_A 213 QFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEG 273 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667789999988865 57789999999999999998877665433
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=70.04 E-value=1 Score=37.84 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVFSVAVNIML 108 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~~l~~~l~~ 108 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+|.+++...+.-...
T Consensus 249 ~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~ 307 (335)
T 2h8o_A 249 LFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVA 307 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 3444566777899999998764 56799999999999999888766654
No 11
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=69.40 E-value=1.5 Score=36.77 Aligned_cols=50 Identities=26% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus 238 ~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 238 GFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677789999998865 56789999999999999998877665433
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=68.23 E-value=2.4 Score=35.19 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++.....-++--+.-
T Consensus 212 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~ 274 (309)
T 3pde_A 212 QFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQA 274 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344456677789999999865 6678999999999999999887776554433
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=66.80 E-value=1.2 Score=36.57 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIM 107 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~ 107 (178)
.-|.--+..+..+..|+.|+.||. +.|+|+.+|.++++..+.-..
T Consensus 219 ~~~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~ 263 (293)
T 2j1p_A 219 RKFARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLN 263 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHH
Confidence 334446677788999999999998 899999999999988876654
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=66.09 E-value=1.3 Score=36.49 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVFSVAVNIMLMA 110 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 110 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+|.+++...+.-...-+
T Consensus 205 ~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 205 SYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777899999999765 5568999999999999988876665433
No 15
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=65.99 E-value=1.5 Score=36.03 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVFSVAVNIMLM 109 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~~l~~~l~~~ 109 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+|.+++...+.-..--
T Consensus 210 ~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677899999998765 467899999999999988776655443
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=58.37 E-value=3.7 Score=33.71 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHccCCChHhhH---------hcCCcccceeeCHHHHHHHHHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGDK---------AFGLRTLPIIIGKEKVFSVAVNIML 108 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegDr---------~~G~~Tlpv~lG~~~a~~l~~~l~~ 108 (178)
-|.--+..+..+..|+.|+.||. ..|+.|+|+.+|.+++..-..-++-
T Consensus 202 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~ 258 (291)
T 3npk_A 202 KLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLN 258 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHH
Confidence 34445667778999999998875 4689999999999999877666543
No 17
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=48.11 E-value=56 Score=26.19 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
++-++..+-.|++|..- .+|..|.-.++|.+.+....-.++..++-
T Consensus 76 liH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 76 LMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence 45556778999999854 67899999999999988887777766654
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=45.40 E-value=5.7 Score=32.62 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHccCCChHhhH-----hcCCcccceeeC--------HHHHHHHHHHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEGDK-----AFGLRTLPIIIG--------KEKVFSVAVNIM 107 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~DiegDr-----~~G~~Tlpv~lG--------~~~a~~l~~~l~ 107 (178)
.-|.--+..+..+..|+.|+.||. ..|+.|+|+.++ .++++..+.-..
T Consensus 193 ~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~ 253 (295)
T 3ipi_A 193 SHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHV 253 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 334445667788999999999864 578899999999 666766655544
No 19
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=45.00 E-value=5.1 Score=33.68 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
.-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.++
T Consensus 218 ~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 218 RDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 3344566777889999999876 45678999999999764
No 20
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=43.13 E-value=5.2 Score=33.15 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEKVF 100 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~a~ 100 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.++.+++-
T Consensus 198 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~ 248 (325)
T 3aqb_B 198 QFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLK 248 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCC
Confidence 3445666777899999998765 567999999999987763
No 21
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=42.60 E-value=5.3 Score=33.39 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVF 100 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~ 100 (178)
|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.+++.
T Consensus 202 ~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~ 251 (340)
T 2e8v_A 202 FINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTK 251 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCc
Confidence 34455667789999988865 5677999999999988764
No 22
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=39.87 E-value=6.3 Score=33.58 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.+++
T Consensus 244 ~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 244 HYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 344456677789999999876 556899999999999876
No 23
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=39.00 E-value=4 Score=33.55 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHccCCChHhh----------HhcCCcccceeeCHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGD----------KAFGLRTLPIIIGKEKVFS 101 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegD----------r~~G~~Tlpv~lG~~~a~~ 101 (178)
|.--+..+..+..|+.|+.|| .+.|+.|+|+.++.+++..
T Consensus 192 ~g~~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~ 241 (299)
T 1v4e_A 192 LGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChH
Confidence 344566677899999998887 4568999999999987654
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=36.81 E-value=5.7 Score=33.27 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.++.
T Consensus 207 ~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 256 (341)
T 3mzv_A 207 DYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALA 256 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhC
Confidence 344466677789999999876 557899999999997653
No 25
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=36.18 E-value=4.6 Score=34.26 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHccCCChHhh----------HhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD----------KAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD----------r~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+|.+++
T Consensus 251 ~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 251 KILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 3444666777899999999876 46799999999998765
No 26
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=35.71 E-value=5.6 Score=33.17 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.++.
T Consensus 211 ~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 260 (334)
T 3pko_A 211 DIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHA 260 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhC
Confidence 344456667788899888865 678999999999998764
No 27
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=33.50 E-value=4.6 Score=34.20 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHccCCChHhh----------HhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD----------KAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD----------r~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.++.+++
T Consensus 244 ~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 292 (367)
T 1uby_A 244 AILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV 292 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC
Confidence 3344566677899999999875 56799999999998764
No 28
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=32.14 E-value=8.1 Score=31.69 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.4
Q ss_pred HHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 64 VIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 64 ~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
--+..+..+..|+.|+.| |.+.|+.|+|+.++.++
T Consensus 179 ~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~ 224 (301)
T 2q80_A 179 NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 224 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHc
Confidence 345667788999988865 56779999999998764
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=32.03 E-value=7.1 Score=32.38 Aligned_cols=41 Identities=29% Similarity=0.242 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHccCCChHh----------hHhcCCcccceeeCHHHH
Q 030366 59 TAAYLVIWNTAIAFVKDIPDVEG----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 59 ~~~f~~l~~~~~~i~~di~Dieg----------Dr~~G~~Tlpv~lG~~~a 99 (178)
..-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.+++
T Consensus 197 l~~~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~ 247 (330)
T 1wmw_A 197 YEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEEA 247 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHhC
Confidence 44445566777789999988865 677899999999988654
No 30
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=31.81 E-value=12 Score=31.12 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHccCCChH----------hhHhcCCcccceeeCHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVE----------GDKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Die----------gDr~~G~~Tlpv~lG~~~a 99 (178)
|.--+..+..+..|+.|+. .|.+.|+.|+|+.+..+++
T Consensus 202 ~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 202 LGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 3445666777888888774 6888999999999977765
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=31.46 E-value=9.4 Score=31.77 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.++
T Consensus 205 ~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 205 SWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
Confidence 344456677789999999875 45578999999999864
No 32
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=31.30 E-value=7.3 Score=32.26 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.++
T Consensus 188 ~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~ 235 (315)
T 3tc1_A 188 FGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHh
Confidence 34456677789999999866 56679999999998776
No 33
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=31.29 E-value=4.9 Score=34.42 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHccCCChHh----------hHhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg----------Dr~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.| |.+.|+.|+|+.++.+++
T Consensus 273 ~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 321 (395)
T 2ihi_A 273 DISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhC
Confidence 344456667789999999876 467899999999998874
No 34
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=31.08 E-value=6.2 Score=33.16 Aligned_cols=39 Identities=8% Similarity=-0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHccCCChHhh----------HhcCCcccceeeCHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD----------KAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD----------r~~G~~Tlpv~lG~~~a 99 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.++.+++
T Consensus 237 ~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~ 285 (362)
T 1yhl_A 237 RVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA 285 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC
Confidence 3444566777899999999875 55799999999987654
No 35
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=30.87 E-value=77 Score=25.74 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=+.-++..+-.|+|.++.| .++|..|.-.++|++.+....-.++..++-
T Consensus 71 EliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ 120 (297)
T 3m0g_A 71 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFE 120 (297)
T ss_dssp HHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3555567789999866665 568999999999999988887777655443
No 36
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=30.71 E-value=10 Score=31.93 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..++.+..|+.|+.| |.+.|+.|+|+.++.++
T Consensus 211 ~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 211 KYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 344456677789999999865 55679999999999876
No 37
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=30.42 E-value=9.3 Score=32.19 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHccCCChHh-----------hHhcCCc-ccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLR-TLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~-Tlpv~lG~~~ 98 (178)
-|.--+..+..+..|+.|+.| |.+.|+. |+|+.++.++
T Consensus 212 ~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 212 NFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 344456667789999999876 4567899 9999999886
No 38
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=30.12 E-value=7.6 Score=32.85 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHH
Q 030366 60 AAYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEK 98 (178)
Q Consensus 60 ~~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~ 98 (178)
.-|.--+..+..+..|+.|+.|| .+.|+.|+|+.++.++
T Consensus 226 ~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~ 275 (360)
T 3lmd_A 226 KNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHc
Confidence 33445667778899999998765 5679999999997654
No 39
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=28.44 E-value=92 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=+.-++..+-.|+|.++.| .++|..|.-.++|++.+....-.++..++-
T Consensus 75 EliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 124 (317)
T 4f62_A 75 ESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFE 124 (317)
T ss_dssp HHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHH
Confidence 3455567789999766555 568999999999999998887777655543
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=28.18 E-value=9.6 Score=31.13 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHccCCChHhh----HhcCCcccceee---CHHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD----KAFGLRTLPIII---GKEKV 99 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD----r~~G~~Tlpv~l---G~~~a 99 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+ |.+.+
T Consensus 195 ~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~~~~g~~~a 240 (289)
T 2azj_A 195 DVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEY 240 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHHHcCCHHHH
Confidence 3444566777899999999875 456779999999 87766
No 41
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=27.97 E-value=9.5 Score=32.52 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHccCCChHh----------hHhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEG----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~Dieg----------Dr~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..++.+..|+.|+.| |.+.|+.|+|+.+..++
T Consensus 265 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~ 312 (390)
T 3dyh_A 265 ELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAK 312 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHh
Confidence 344456677889999999987 56789999999988765
No 42
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=27.09 E-value=97 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=23.9
Q ss_pred HHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=+.-.+..+-.|+.| +.|.++|..|.-.++|.+.|....-.++..++-
T Consensus 67 EliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 114 (315)
T 3tc1_A 67 EMIQTASLLHDDVID-KATMRRKLPSINALFGNFNAVMLGDVFYSKAFF 114 (315)
T ss_dssp HHHHHHHHHHHHTC-----------------CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC-CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHH
Confidence 355556778999999 577789999999999999988887777665544
No 43
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=27.08 E-value=88 Score=25.82 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHHHHHHccCCChHhhH-hcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDK-AFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr-~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-++..+-.|+|.++.|. ++|..|.-.++|++.+....-.++..++-
T Consensus 105 liH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 153 (324)
T 3uca_A 105 MIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMK 153 (324)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 4555677899998887764 57999999999999998887777766654
No 44
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=26.94 E-value=17 Score=29.60 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVA 103 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~ 103 (178)
|..-+..+..+..|+.|+.| |.+ +.|+|+.+|.+++...+
T Consensus 201 ~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~l~~a~~~a 251 (284)
T 2ftz_A 201 LGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVGIQXAREMA 251 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHHHHHHHHHH
No 45
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=26.29 E-value=98 Score=25.00 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
++-.+..+-.|+|.++.| .++|..|.-.++|++.+....-.++..++-
T Consensus 75 liH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~ 123 (299)
T 1rqj_A 75 CIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHH
Confidence 555567789999777665 468999999999999998887777765554
No 46
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=25.69 E-value=1e+02 Score=25.03 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-++..+-.|+|.+++| .++|..|.-.++|++.+....-.++..++-
T Consensus 81 liH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~ 129 (302)
T 3p8r_A 81 CIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFT 129 (302)
T ss_dssp HHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHH
Confidence 455566789999877666 458999999999999998887777665554
No 47
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=25.58 E-value=14 Score=30.77 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHccCCChHhh-----------HhcCCcccceeeCHHH
Q 030366 61 AYLVIWNTAIAFVKDIPDVEGD-----------KAFGLRTLPIIIGKEK 98 (178)
Q Consensus 61 ~f~~l~~~~~~i~~di~DiegD-----------r~~G~~Tlpv~lG~~~ 98 (178)
-|.--+..+..+..|+.|+.|| .+.|+.|+|+.+..++
T Consensus 221 ~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~ 269 (348)
T 3apz_A 221 EYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEE 269 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHc
Confidence 3444566777899999998765 6679999999985543
No 48
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=25.24 E-value=8.6 Score=32.74 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCCChHh----------hHhcCCcccceeeCHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG----------DKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg----------Dr~~G~~Tlpv~lG~~~a 99 (178)
|.--+..++.+..|+-|+.| |.+.|+.|+|+.++.+++
T Consensus 274 ~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~ 321 (395)
T 3mav_A 274 ISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhC
Confidence 33345667789999988876 566899999999987754
No 49
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=25.15 E-value=8.6 Score=32.65 Aligned_cols=37 Identities=19% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHccCCChH------hhHhcCCcccceeeCHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVE------GDKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Die------gDr~~G~~Tlpv~lG~~~a 99 (178)
.--+..+..+..|+.|+. .|.+.|+.|+|+.++.+++
T Consensus 243 g~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~T~pvi~al~~a 285 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYLFNDSNADDICRFKLTWPLQKSFEIA 285 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSSCTTTTTCCCHHHHSSTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHhCCcccHHHHHHHHhC
Confidence 334556678888888875 6999999999999998753
No 50
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=24.75 E-value=1e+02 Score=25.18 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=+.-++..+-.|+|.++.| .++|..|.-.++|+..+....-.++..++-
T Consensus 80 EliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ 129 (313)
T 3lom_A 80 ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIE 129 (313)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3455567789999877665 567999999999999998887777766654
No 51
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=24.28 E-value=19 Score=18.82 Aligned_cols=9 Identities=22% Similarity=0.302 Sum_probs=6.9
Q ss_pred ccCCChHhh
Q 030366 74 KDIPDVEGD 82 (178)
Q Consensus 74 ~di~DiegD 82 (178)
|.++|++||
T Consensus 16 NAlpdi~~~ 24 (26)
T 1cmk_I 16 NAIHDILXX 24 (26)
T ss_pred cccchhhhc
Confidence 667888876
No 52
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=22.55 E-value=11 Score=31.88 Aligned_cols=35 Identities=17% Similarity=-0.001 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCChH------hhHhcCCcccceeeCHHHH
Q 030366 65 IWNTAIAFVKDIPDVE------GDKAFGLRTLPIIIGKEKV 99 (178)
Q Consensus 65 l~~~~~~i~~di~Die------gDr~~G~~Tlpv~lG~~~a 99 (178)
-+..+..+..|+-|+. .|.+.|+.|+|+.++.+++
T Consensus 245 ~lG~aFQI~DDiLD~~~gK~~g~Dl~egK~T~p~i~al~~~ 285 (368)
T 2q58_A 245 KLGEFYQVHNDVSDYLFNDSNADDICRFKLTWPLQKSFEIA 285 (368)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSCTTTSCCCCHHHHSSTTTC
T ss_pred HHHHHHHHHHHHhhcccCCCCCchHhcCCcHHHHHHHHHhC
Confidence 4556678888888865 4888999999999997654
No 53
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=22.47 E-value=2.1e+02 Score=23.44 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
++-.+..+-.|+.| +.|..+|..|.-.++|.+.|....-.++..++-
T Consensus 98 liH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 144 (348)
T 3apz_A 98 MIHVASLLHDDVLD-DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACG 144 (348)
T ss_dssp HHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccC-CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHH
Confidence 45556678899988 457788999999999999988887777665544
No 54
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=22.17 E-value=1.1e+02 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=29.9
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-++..+-.|+.| +.|.++|..|.-.++|.+.+....-.++.-++-
T Consensus 96 liH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 142 (345)
T 3oyr_A 96 FIHTATLLHDDVVD-GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFE 142 (345)
T ss_dssp HHHHHHHHTTTTC----------CCCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccC-CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHH
Confidence 45556778999988 456678999999999999998887777655543
No 55
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=21.45 E-value=1.2e+02 Score=24.57 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+.-++..+-.|+|.++.| .++|..|.-.++|++.+....-.++..++-
T Consensus 75 liH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ 123 (304)
T 3lsn_A 75 LIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFS 123 (304)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHH
Confidence 455567789999866665 457999999999999998887777665544
No 56
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=21.41 E-value=1.3e+02 Score=25.03 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=+.-.+..+-.|+.| +.|..+|..|.-.++|.+.+....-.++..++-
T Consensus 105 EliH~asLIHDDImD-~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 152 (360)
T 3lmd_A 105 EITHLATLYHDDVMD-EASMRRGVPSANARWDNSVAILAGDILLAHASG 152 (360)
T ss_dssp HHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcC-CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHH
Confidence 345556678889977 456778999999999999988887777665554
No 57
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=21.30 E-value=2.1e+02 Score=19.86 Aligned_cols=49 Identities=16% Similarity=-0.023 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVL 116 (178)
Q Consensus 62 f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~ 116 (178)
+..++....+..|.+++.-=|--.|.+| .|..+......+.++.+..+.
T Consensus 75 ~~~~~a~~yH~~nGiRhl~~D~G~g~~~------~~~~~~~~~~vl~~s~vlt~~ 123 (129)
T 2wdq_C 75 WGILTALAYHVVVGIRHMMMDFGYLEET------FEAGKRSAKISFVITVVLSLL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhccccccc------cHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888886555443 444444444454444443333
Done!