Query 030366
Match_columns 178
No_of_seqs 192 out of 807
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 20:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030366.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030366hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 69.4 4 0.00029 31.3 5.8 50 63-112 73-123 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 60.7 0.75 5.5E-05 35.6 -0.3 41 62-102 205-256 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 58.0 1.2 8.9E-05 34.4 0.6 45 62-106 211-266 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 57.8 6.3 0.00046 30.0 4.8 49 64-112 71-120 (290)
5 d1fpsa_ a.128.1.1 (A:) Farnesy 26.1 3.2 0.00023 32.6 -2.0 36 63-98 227-272 (348)
6 d1v4ea_ a.128.1.1 (A:) Octopre 19.2 1.6E+02 0.012 21.3 9.7 47 65-112 64-110 (280)
7 d1h2sa_ f.13.1.1 (A:) Sensory 17.9 1.6E+02 0.011 20.8 8.8 24 153-176 153-176 (225)
8 d2j3wa1 d.110.4.3 (A:1-140) Se 14.5 78 0.0057 21.0 3.7 29 148-177 87-115 (140)
9 d1xioa_ f.13.1.1 (A:) Sensory 11.6 2.4E+02 0.017 19.6 9.2 14 56-69 75-88 (226)
10 d2q80a1 a.128.1.1 (A:6-296) Ge 9.1 61 0.0044 24.0 1.7 48 64-112 49-96 (291)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=69.41 E-value=4 Score=31.28 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHccCCChHh-hHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEG-DKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Dieg-Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
+=++-.+..+-.|++|.+. |.++|..|+-.++|.+.|....-.++..++-
T Consensus 73 iEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 73 VECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHH
Confidence 3355567778899999887 4799999999999999998888777766655
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=60.70 E-value=0.75 Score=35.57 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSV 102 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l 102 (178)
|..-+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++..-
T Consensus 205 ~g~~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~~ 256 (290)
T d1rtra_ 205 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDK 256 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHHH
Confidence 34456667789999999875 556799999999999887654
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=58.04 E-value=1.2 Score=34.43 Aligned_cols=45 Identities=31% Similarity=0.440 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHH
Q 030366 62 YLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNI 106 (178)
Q Consensus 62 f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l 106 (178)
|..-+..+..+..|+.|+.| |.+.|+.|+|+.+|.+++..-..-+
T Consensus 211 ~g~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~~~ 266 (299)
T d1rqja_ 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHHHH
Confidence 34456677789999998865 6777999999999999987665433
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=57.83 E-value=6.3 Score=29.97 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHHHccCCChHhh-HhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGD-KAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=++-.+..+-.|++|++.| ..+|..|+-.++|.+.+....-.++..++-
T Consensus 71 EllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 71 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 3555677789999998775 588999999999999998887776655544
No 5
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.14 E-value=3.2 Score=32.56 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHccCCChHh----------hHhcCCcccceeeCHHH
Q 030366 63 LVIWNTAIAFVKDIPDVEG----------DKAFGLRTLPIIIGKEK 98 (178)
Q Consensus 63 ~~l~~~~~~i~~di~Dieg----------Dr~~G~~Tlpv~lG~~~ 98 (178)
..-+..+..+..|+.|+.| |.+.|+.|+|+.+..++
T Consensus 227 g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 227 LLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred ccccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 3345667789999998876 67778999999997654
No 6
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=19.24 E-value=1.6e+02 Score=21.35 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
++-.+..+-.|+.| +.|.++|..|.-.++|.+.+....-.++..++-
T Consensus 64 liH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~ 110 (280)
T d1v4ea_ 64 LVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 110 (280)
T ss_dssp HHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhh
Confidence 44556678899988 678899999999999999998887777655544
No 7
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=17.93 E-value=1.6e+02 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 030366 153 NKSAKSFYMLTWKLYCVEFFLLHF 176 (178)
Q Consensus 153 ~~~~~~~y~fiw~lf~~~~~~~p~ 176 (178)
.+++++.|.-+-...-..-.+||+
T Consensus 153 ~~~~~~~~~~l~~~~~v~W~iYPi 176 (225)
T d1h2sa_ 153 SSGIKSLYVRLRNLTVILWAIYPF 176 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665555555555566654
No 8
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.54 E-value=78 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhc
Q 030366 148 NDPSDNKSAKSFYMLTWKLYCVEFFLLHFV 177 (178)
Q Consensus 148 vd~~~~~~~~~~y~fiw~lf~~~~~~~p~~ 177 (178)
.|+++.+.++.+.+-+..+| ++|++=||.
T Consensus 87 td~~~~~~i~~~~~~v~~lY-v~~v~NPfy 115 (140)
T d2j3wa1 87 HDVRQEDGIKNFFTDVYDLY-IKFAMNPFY 115 (140)
T ss_dssp ESSCCHHHHHHHHHHHHHHH-HHHHHSTTC
T ss_pred eCCCcchHHHHHHHHHHHHH-HHHhhCccC
Confidence 37888889999999999877 799998884
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=11.64 E-value=2.4e+02 Score=19.63 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 030366 56 VLFTAAYLVIWNTA 69 (178)
Q Consensus 56 ~~~~~~f~~l~~~~ 69 (178)
-|+...+..+....
T Consensus 75 DW~lTtPlll~~l~ 88 (226)
T d1xioa_ 75 DWMVTTPLLLLSLS 88 (226)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHH
Confidence 46666665555544
No 10
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.14 E-value=61 Score=23.97 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHH
Q 030366 64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYG 112 (178)
Q Consensus 64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 112 (178)
=++-.+..+-.|+.|- .|.++|..|+-.++|.+.+....-.++..++-
T Consensus 49 EllH~asLihDDi~D~-~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 49 EMLHNASLLIDDIEDN-SKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccC-cccccCCCccccccchhhhhhHHHHHHHHHHH
Confidence 3555566778888754 36778999999999999988887777665543
Done!