Query 030367
Match_columns 178
No_of_seqs 180 out of 1031
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 7.4E-27 1.6E-31 200.9 16.1 161 6-172 196-357 (358)
2 PRK10532 threonine and homoser 99.8 6.3E-20 1.4E-24 153.5 15.5 135 6-146 155-289 (293)
3 PRK11453 O-acetylserine/cystei 99.8 7.6E-20 1.6E-24 153.3 15.1 137 6-142 150-291 (299)
4 PRK11272 putative DMT superfam 99.8 2.2E-18 4.8E-23 144.0 14.0 133 6-142 157-289 (292)
5 PRK11689 aromatic amino acid e 99.8 2.3E-18 4.9E-23 144.2 12.9 130 6-143 163-292 (295)
6 TIGR00817 tpt Tpt phosphate/ph 99.7 2.4E-17 5.1E-22 138.1 11.4 140 6-146 152-301 (302)
7 PF00892 EamA: EamA-like trans 99.7 6.2E-17 1.3E-21 116.9 10.0 125 9-137 1-125 (126)
8 TIGR00950 2A78 Carboxylate/Ami 99.7 6.3E-16 1.4E-20 125.9 14.0 124 6-133 135-259 (260)
9 PRK15430 putative chlorampheni 99.6 3.3E-15 7.1E-20 125.2 13.4 131 6-140 156-287 (296)
10 TIGR03340 phn_DUF6 phosphonate 99.6 3.2E-15 7E-20 124.2 12.1 127 6-135 151-280 (281)
11 PTZ00343 triose or hexose phos 99.5 2.3E-13 4.9E-18 116.9 13.2 133 6-139 201-349 (350)
12 COG2510 Predicted membrane pro 99.5 3.1E-13 6.7E-18 99.8 11.4 130 6-138 10-139 (140)
13 COG5006 rhtA Threonine/homoser 99.5 4E-13 8.7E-18 109.5 11.1 135 6-145 155-289 (292)
14 COG0697 RhaT Permeases of the 99.5 2.5E-12 5.4E-17 104.9 15.1 127 6-139 161-288 (292)
15 PRK02971 4-amino-4-deoxy-L-ara 99.3 2E-11 4.3E-16 91.3 8.4 76 67-142 49-126 (129)
16 PRK15430 putative chlorampheni 99.2 2.3E-10 4.9E-15 95.9 14.4 129 6-137 15-144 (296)
17 PF06027 DUF914: Eukaryotic pr 99.2 3E-10 6.5E-15 97.1 15.0 135 6-143 175-310 (334)
18 TIGR03340 phn_DUF6 phosphonate 99.2 2.9E-10 6.3E-15 94.4 14.7 129 6-139 8-136 (281)
19 TIGR00776 RhaT RhaT L-rhamnose 99.2 3E-10 6.6E-15 95.2 11.0 123 6-139 159-289 (290)
20 TIGR00688 rarD rarD protein. T 99.1 1.4E-09 3E-14 89.0 13.9 129 6-137 9-141 (256)
21 PF13536 EmrE: Multidrug resis 99.1 2.3E-09 5.1E-14 77.7 10.7 107 34-141 3-109 (113)
22 TIGR00950 2A78 Carboxylate/Ami 99.1 3.5E-09 7.5E-14 86.2 13.0 119 11-138 1-119 (260)
23 PLN00411 nodulin MtN21 family 99.1 4.3E-09 9.3E-14 90.9 13.6 132 7-140 21-158 (358)
24 PRK11272 putative DMT superfam 99.0 1.3E-08 2.9E-13 85.0 14.3 127 6-139 15-142 (292)
25 PF03151 TPT: Triose-phosphate 99.0 2.7E-08 5.8E-13 74.9 13.3 131 6-137 7-152 (153)
26 TIGR00817 tpt Tpt phosphate/ph 99.0 1.9E-08 4.2E-13 84.2 13.7 120 14-137 17-136 (302)
27 PRK11453 O-acetylserine/cystei 98.9 2.7E-08 5.9E-13 83.4 13.6 122 6-139 11-133 (299)
28 PTZ00343 triose or hexose phos 98.9 2.7E-08 5.9E-13 85.5 13.4 123 13-137 63-185 (350)
29 PRK15051 4-amino-4-deoxy-L-ara 98.9 3.1E-08 6.6E-13 72.1 10.9 67 72-138 43-109 (111)
30 TIGR00688 rarD rarD protein. T 98.9 2E-08 4.3E-13 82.2 10.4 100 6-113 153-255 (256)
31 PRK11689 aromatic amino acid e 98.8 1.7E-07 3.8E-12 78.4 13.7 124 6-139 11-138 (295)
32 PF08449 UAA: UAA transporter 98.8 4.5E-07 9.8E-12 76.2 15.2 138 6-144 161-303 (303)
33 COG2962 RarD Predicted permeas 98.5 2.9E-06 6.3E-11 70.9 12.9 132 6-141 155-286 (293)
34 COG0697 RhaT Permeases of the 98.5 4.6E-06 1E-10 67.8 13.7 134 6-143 14-148 (292)
35 PRK10452 multidrug efflux syst 98.4 1.6E-06 3.5E-11 64.0 8.0 70 72-141 36-106 (120)
36 KOG2765 Predicted membrane pro 98.3 4.5E-06 9.8E-11 71.9 10.0 136 6-141 254-393 (416)
37 COG2962 RarD Predicted permeas 98.3 2.4E-05 5.1E-10 65.5 12.7 131 6-139 14-145 (293)
38 PF08449 UAA: UAA transporter 98.2 4.6E-05 9.9E-10 64.1 12.9 130 10-145 11-143 (303)
39 TIGR00776 RhaT RhaT L-rhamnose 98.2 3.1E-05 6.6E-10 65.0 11.5 124 6-139 8-137 (290)
40 KOG1441 Glucose-6-phosphate/ph 98.1 5.8E-06 1.3E-10 70.4 6.4 139 6-145 170-314 (316)
41 PRK09541 emrE multidrug efflux 98.1 1.8E-05 4E-10 57.5 7.9 69 72-140 36-105 (110)
42 KOG1580 UDP-galactose transpor 98.0 0.00025 5.4E-09 58.2 13.2 74 63-137 239-312 (337)
43 PRK10532 threonine and homoser 97.9 0.00027 5.9E-09 59.1 12.9 118 6-137 19-136 (293)
44 TIGR00803 nst UDP-galactose tr 97.9 2.4E-05 5.2E-10 62.8 6.1 63 73-135 159-221 (222)
45 COG2076 EmrE Membrane transpor 97.9 6.8E-05 1.5E-09 54.1 7.3 68 73-140 37-105 (106)
46 PRK10650 multidrug efflux syst 97.9 0.00042 9E-09 50.3 11.1 65 73-137 42-107 (109)
47 PRK11431 multidrug efflux syst 97.8 0.00015 3.3E-09 52.2 7.5 67 73-139 36-103 (105)
48 KOG4510 Permease of the drug/m 97.7 2.9E-05 6.3E-10 64.6 2.6 62 79-140 110-171 (346)
49 KOG4510 Permease of the drug/m 97.6 4E-05 8.7E-10 63.7 2.6 77 63-140 251-327 (346)
50 PF00893 Multi_Drug_Res: Small 97.6 0.00019 4.1E-09 50.5 5.6 57 73-129 36-93 (93)
51 PF06800 Sugar_transport: Suga 97.5 0.0028 6E-08 52.9 12.0 71 75-145 54-129 (269)
52 PF04657 DUF606: Protein of un 97.4 0.0041 8.8E-08 46.9 11.1 126 6-135 8-138 (138)
53 PF06027 DUF914: Eukaryotic pr 97.2 0.011 2.3E-07 51.0 12.5 76 65-141 79-154 (334)
54 PF04142 Nuc_sug_transp: Nucle 97.1 0.00085 1.8E-08 55.2 5.4 67 78-144 29-95 (244)
55 KOG2766 Predicted membrane pro 96.9 0.012 2.6E-07 49.0 10.1 124 6-136 173-297 (336)
56 PRK13499 rhamnose-proton sympo 96.9 0.015 3.2E-07 50.3 11.0 128 6-141 14-156 (345)
57 KOG1582 UDP-galactose transpor 96.8 0.0067 1.4E-07 50.9 8.1 127 15-141 206-335 (367)
58 KOG1443 Predicted integral mem 96.7 0.061 1.3E-06 45.8 13.1 109 27-136 196-313 (349)
59 KOG1581 UDP-galactose transpor 96.6 0.013 2.7E-07 49.7 8.2 126 15-142 188-317 (327)
60 PF05653 Mg_trans_NIPA: Magnes 96.6 0.0015 3.2E-08 55.4 2.7 67 72-138 56-122 (300)
61 COG3238 Uncharacterized protei 96.6 0.043 9.3E-07 42.0 10.2 132 6-140 12-148 (150)
62 PF04142 Nuc_sug_transp: Nucle 96.4 0.045 9.7E-07 45.0 10.4 122 6-129 121-244 (244)
63 KOG2234 Predicted UDP-galactos 96.4 0.14 3.1E-06 44.1 13.3 131 7-142 191-326 (345)
64 PF10639 UPF0546: Uncharacteri 96.3 0.007 1.5E-07 44.2 4.5 59 78-136 53-112 (113)
65 COG5070 VRG4 Nucleotide-sugar 96.3 0.039 8.5E-07 45.2 8.8 123 7-131 163-289 (309)
66 KOG1444 Nucleotide-sugar trans 96.0 0.1 2.2E-06 44.4 10.6 134 8-144 166-306 (314)
67 PF06800 Sugar_transport: Suga 95.5 0.15 3.4E-06 42.6 9.5 58 78-135 207-268 (269)
68 KOG1442 GDP-fucose transporter 95.1 0.024 5.2E-07 47.6 3.6 140 6-146 192-335 (347)
69 COG4975 GlcU Putative glucose 94.7 0.014 3.1E-07 48.2 1.2 66 77-142 70-140 (288)
70 KOG2234 Predicted UDP-galactos 94.6 0.12 2.7E-06 44.5 6.7 61 81-141 107-167 (345)
71 KOG1583 UDP-N-acetylglucosamin 94.4 0.66 1.4E-05 39.2 10.5 65 73-137 245-313 (330)
72 PF04342 DUF486: Protein of un 93.8 0.073 1.6E-06 38.3 3.1 30 107-136 77-106 (108)
73 KOG1441 Glucose-6-phosphate/ph 93.8 0.025 5.3E-07 48.4 0.8 101 17-120 35-137 (316)
74 KOG4314 Predicted carbohydrate 93.7 0.025 5.4E-07 45.5 0.8 64 78-141 65-128 (290)
75 KOG2922 Uncharacterized conser 93.5 0.017 3.7E-07 49.3 -0.5 71 73-143 71-141 (335)
76 KOG2765 Predicted membrane pro 93.4 0.045 9.8E-07 47.7 1.9 66 78-143 171-236 (416)
77 COG3169 Uncharacterized protei 92.4 0.3 6.5E-06 34.8 4.6 33 105-137 82-114 (116)
78 PF05653 Mg_trans_NIPA: Magnes 91.9 1.1 2.4E-05 37.9 8.4 69 73-141 220-295 (300)
79 KOG1580 UDP-galactose transpor 91.1 0.68 1.5E-05 38.4 5.9 130 9-146 23-165 (337)
80 KOG1444 Nucleotide-sugar trans 90.6 3.8 8.2E-05 35.1 10.2 123 6-136 15-147 (314)
81 PRK13108 prolipoprotein diacyl 89.5 3.3 7.1E-05 37.3 9.4 34 118-151 254-287 (460)
82 PF05977 MFS_3: Transmembrane 88.6 19 0.00041 32.8 14.6 41 97-137 351-391 (524)
83 PF04306 DUF456: Protein of un 87.3 9.7 0.00021 28.6 9.5 70 64-143 32-102 (140)
84 COG3086 RseC Positive regulato 86.5 0.99 2.1E-05 34.4 3.6 26 88-113 70-95 (150)
85 PRK02237 hypothetical protein; 86.3 1.3 2.8E-05 32.0 4.0 44 98-141 65-108 (109)
86 KOG3912 Predicted integral mem 86.1 1 2.3E-05 38.2 3.9 65 75-139 95-159 (372)
87 PF02694 UPF0060: Uncharacteri 83.9 1.6 3.4E-05 31.5 3.5 43 99-141 64-106 (107)
88 KOG3912 Predicted integral mem 81.4 10 0.00023 32.3 7.9 131 6-137 183-333 (372)
89 KOG1443 Predicted integral mem 79.7 6.6 0.00014 33.7 6.3 122 17-140 34-158 (349)
90 PF01102 Glycophorin_A: Glycop 78.9 2 4.4E-05 31.7 2.7 20 124-143 75-94 (122)
91 PF04246 RseC_MucC: Positive r 77.0 2.3 4.9E-05 31.5 2.6 23 92-114 67-89 (135)
92 PF06379 RhaT: L-rhamnose-prot 76.6 25 0.00053 30.6 9.0 64 78-141 85-156 (344)
93 PRK13499 rhamnose-proton sympo 76.4 51 0.0011 28.6 14.3 61 78-139 272-342 (345)
94 KOG4831 Unnamed protein [Funct 74.8 6.9 0.00015 28.4 4.4 58 79-136 65-123 (125)
95 PRK10862 SoxR reducing system 74.1 3.9 8.5E-05 31.3 3.2 22 93-114 75-96 (154)
96 PF06679 DUF1180: Protein of u 73.2 5.9 0.00013 30.8 4.0 16 157-172 137-152 (163)
97 PF08507 COPI_assoc: COPI asso 72.9 11 0.00024 28.0 5.3 30 108-138 76-105 (136)
98 PRK15049 L-asparagine permease 71.5 77 0.0017 28.5 12.6 20 92-112 416-435 (499)
99 KOG1442 GDP-fucose transporter 70.0 1.5 3.3E-05 37.1 0.1 103 27-135 60-171 (347)
100 PF15099 PIRT: Phosphoinositid 66.8 2.5 5.3E-05 31.4 0.6 17 66-82 57-73 (129)
101 TIGR00905 2A0302 transporter, 65.9 95 0.0021 27.5 10.7 46 97-142 393-438 (473)
102 PF11295 DUF3096: Protein of u 63.1 8.8 0.00019 22.6 2.4 33 103-135 1-33 (39)
103 PRK03893 putative sialic acid 61.7 1.1E+02 0.0024 26.6 14.0 13 162-174 482-494 (496)
104 PF15102 TMEM154: TMEM154 prot 61.4 7.2 0.00016 29.7 2.3 23 124-146 67-89 (146)
105 PRK12437 prolipoprotein diacyl 60.4 57 0.0012 27.1 7.8 73 67-140 178-257 (269)
106 PRK10489 enterobactin exporter 57.9 1.2E+02 0.0026 25.8 13.9 20 122-141 382-401 (417)
107 KOG1583 UDP-N-acetylglucosamin 57.6 9.5 0.00021 32.4 2.6 108 29-144 34-143 (330)
108 KOG2922 Uncharacterized conser 56.7 23 0.00049 30.6 4.8 61 80-140 241-308 (335)
109 PRK11357 frlA putative fructos 56.5 1.2E+02 0.0025 26.6 9.5 44 98-142 389-437 (445)
110 COG4975 GlcU Putative glucose 55.7 4.6 0.0001 33.7 0.5 60 78-137 221-284 (288)
111 PF07857 DUF1632: CEO family ( 54.4 19 0.00041 29.9 3.9 25 119-143 115-139 (254)
112 TIGR00544 lgt prolipoprotein d 54.4 66 0.0014 26.9 7.2 24 118-141 246-269 (278)
113 PF15345 TMEM51: Transmembrane 52.3 15 0.00032 30.2 2.8 25 124-148 67-91 (233)
114 PF03547 Mem_trans: Membrane t 51.6 1.5E+02 0.0033 25.2 14.5 10 102-111 111-120 (385)
115 TIGR02840 spore_YtaF putative 50.8 21 0.00046 28.5 3.5 45 93-137 34-80 (206)
116 KOG4314 Predicted carbohydrate 48.8 1.5E+02 0.0032 24.2 8.1 132 6-141 142-279 (290)
117 COG2149 Predicted membrane pro 48.2 33 0.00071 25.2 3.8 49 70-139 26-74 (120)
118 KOG1581 UDP-galactose transpor 48.0 1.5E+02 0.0032 25.6 8.2 123 13-143 28-160 (327)
119 PRK05122 major facilitator sup 46.2 1.8E+02 0.0038 24.4 14.2 34 104-137 353-386 (399)
120 TIGR01167 LPXTG_anchor LPXTG-m 45.5 40 0.00086 18.3 3.2 15 119-133 11-25 (34)
121 PRK11902 ampG muropeptide tran 44.2 2E+02 0.0043 24.4 13.4 26 116-141 364-391 (402)
122 PF06963 FPN1: Ferroportin1 (F 44.2 97 0.0021 27.7 7.0 66 70-138 300-368 (432)
123 PRK00052 prolipoprotein diacyl 43.8 1.1E+02 0.0023 25.4 6.9 25 118-142 237-261 (269)
124 PF06946 Phage_holin_5: Phage 41.8 1.2E+02 0.0026 21.3 7.2 59 84-146 22-88 (93)
125 PRK11469 hypothetical protein; 41.3 22 0.00047 28.0 2.2 42 96-137 44-86 (188)
126 PF05393 Hum_adeno_E3A: Human 40.7 60 0.0013 22.7 4.0 28 118-145 35-62 (94)
127 COG2034 Predicted membrane pro 40.4 46 0.00099 23.0 3.4 31 121-151 14-44 (85)
128 PF11118 DUF2627: Protein of u 38.3 48 0.001 22.5 3.2 42 96-137 6-58 (77)
129 COG1742 Uncharacterized conser 36.9 29 0.00063 25.0 2.1 41 101-141 67-107 (109)
130 COG5006 rhtA Threonine/homoser 36.5 2.6E+02 0.0057 23.6 11.9 93 10-110 23-115 (292)
131 PF12832 MFS_1_like: MFS_1 lik 36.0 73 0.0016 21.1 3.9 45 67-111 9-53 (77)
132 PF12036 DUF3522: Protein of u 36.0 1.6E+02 0.0035 23.0 6.4 73 64-139 63-135 (186)
133 PF07444 Ycf66_N: Ycf66 protei 34.9 49 0.0011 22.8 2.9 28 117-144 4-31 (84)
134 TIGR03810 arg_ornith_anti argi 34.7 3.2E+02 0.007 24.1 11.6 41 100-141 391-432 (468)
135 TIGR00803 nst UDP-galactose tr 34.1 28 0.00061 27.4 1.9 44 98-141 10-53 (222)
136 PF01350 Flavi_NS4A: Flaviviru 33.9 2.1E+02 0.0046 21.7 7.6 61 80-144 62-122 (144)
137 PF08693 SKG6: Transmembrane a 33.4 33 0.00072 20.3 1.6 18 124-141 21-38 (40)
138 PRK10644 arginine:agmatin anti 33.4 3.3E+02 0.0071 23.8 12.2 19 97-115 385-403 (445)
139 PF06781 UPF0233: Uncharacteri 33.0 96 0.0021 21.5 4.1 55 63-137 30-84 (87)
140 PF11755 DUF3311: Protein of u 31.5 1.5E+02 0.0032 19.2 5.2 17 99-115 3-19 (66)
141 PF15471 TMEM171: Transmembran 31.1 56 0.0012 27.6 3.2 24 121-144 162-185 (319)
142 PRK09579 multidrug efflux prot 29.5 1.8E+02 0.004 28.9 6.9 33 104-137 882-914 (1017)
143 PF02659 DUF204: Domain of unk 29.4 49 0.0011 21.1 2.1 36 94-129 28-63 (67)
144 PF15330 SIT: SHP2-interacting 27.9 1.7E+02 0.0036 21.0 4.8 20 122-141 5-25 (107)
145 PF10710 DUF2512: Protein of u 27.9 2.6E+02 0.0056 20.9 7.9 39 65-103 30-69 (136)
146 PF01102 Glycophorin_A: Glycop 27.8 50 0.0011 24.4 2.1 25 122-146 69-94 (122)
147 PRK09874 drug efflux system pr 27.6 3.6E+02 0.0078 22.4 14.7 20 118-137 376-395 (408)
148 PF13994 PgaD: PgaD-like prote 27.3 2.3E+02 0.005 20.9 5.7 18 123-140 66-83 (138)
149 COG0682 Lgt Prolipoprotein dia 27.2 3.4E+02 0.0073 23.0 7.2 78 67-145 191-279 (287)
150 KOG1631 Translocon-associated 27.0 92 0.002 25.7 3.6 43 115-157 182-228 (261)
151 PF07168 Ureide_permease: Urei 26.6 89 0.0019 27.0 3.6 131 6-138 3-146 (336)
152 PRK10655 potE putrescine trans 26.5 4.3E+02 0.0092 22.9 8.6 37 101-137 389-425 (438)
153 PRK09577 multidrug efflux prot 26.4 2.2E+02 0.0048 28.3 6.9 33 104-137 903-935 (1032)
154 PF02038 ATP1G1_PLM_MAT8: ATP1 26.1 61 0.0013 20.2 1.9 19 122-140 19-37 (50)
155 COG1971 Predicted membrane pro 25.8 91 0.002 24.8 3.4 42 96-137 44-86 (190)
156 TIGR00840 b_cpa1 sodium/hydrog 25.5 5.4E+02 0.012 23.8 10.9 35 6-41 17-51 (559)
157 PRK10054 putative transporter; 25.3 4.2E+02 0.0092 22.4 13.6 36 99-134 141-176 (395)
158 TIGR00966 3a0501s07 protein-ex 25.0 2.4E+02 0.0053 22.9 6.0 43 92-135 123-165 (246)
159 COG2814 AraJ Arabinose efflux 24.8 4.9E+02 0.011 23.0 12.5 41 106-146 352-392 (394)
160 TIGR00910 2A0307_GadC glutamat 24.6 5.2E+02 0.011 23.3 13.9 16 28-43 331-346 (507)
161 CHL00196 psbY photosystem II p 24.5 64 0.0014 18.6 1.7 13 5-17 12-24 (36)
162 COG5070 VRG4 Nucleotide-sugar 24.1 4.3E+02 0.0093 22.1 7.4 130 5-142 8-144 (309)
163 MTH00058 ND1 NADH dehydrogenas 23.7 1.4E+02 0.003 25.3 4.3 21 84-104 30-50 (293)
164 PRK06638 NADH:ubiquinone oxido 23.6 1.1E+02 0.0024 24.2 3.6 27 107-133 133-159 (198)
165 PF04277 OAD_gamma: Oxaloaceta 23.0 1.2E+02 0.0026 19.9 3.2 10 123-132 9-18 (79)
166 PF10166 DUF2368: Uncharacteri 23.0 1.9E+02 0.0041 21.6 4.5 32 70-101 52-83 (131)
167 PRK11021 putative transporter; 22.3 5E+02 0.011 22.3 12.0 36 100-136 365-400 (410)
168 TIGR00881 2A0104 phosphoglycer 22.3 4.2E+02 0.0091 21.3 9.4 7 115-121 144-150 (379)
169 PRK00159 putative septation in 22.2 2E+02 0.0044 19.9 4.1 55 63-137 30-84 (87)
170 TIGR01299 synapt_SV2 synaptic 21.2 7.4E+02 0.016 23.8 13.9 38 9-47 606-643 (742)
171 PRK15432 autoinducer 2 ABC tra 20.9 1.8E+02 0.004 25.0 4.6 39 104-142 262-310 (344)
172 PRK02251 putative septation in 20.6 3E+02 0.0066 19.1 6.1 54 63-137 31-84 (87)
173 PF11044 TMEMspv1-c74-12: Plec 20.5 88 0.0019 19.0 1.8 6 132-137 22-27 (49)
174 TIGR02230 ATPase_gene1 F0F1-AT 20.4 2.2E+02 0.0048 20.2 4.2 33 103-135 55-87 (100)
175 PRK13022 secF preprotein trans 20.3 3.4E+02 0.0074 22.7 6.1 45 90-135 150-194 (289)
176 TIGR00261 traB pheromone shutd 20.3 1.8E+02 0.004 25.6 4.5 43 65-107 272-314 (380)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=7.4e-27 Score=200.92 Aligned_cols=161 Identities=35% Similarity=0.633 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccc-cccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~-~~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
.++++||+|++++|+..+++|+....++|++.++++...+.+...++. ...|....+.....++|.+++ +.++|.+|+
T Consensus 196 ~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~ 274 (358)
T PLN00411 196 IQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHS 274 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHH
Confidence 367899999999999999997666888999999998888877766532 223322222335678999976 678999999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCCcccccC
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPL 164 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (178)
|++++.||++++++.+++|++++++|+++|||++++.+++|+++|+.|++++.++++||.+++++++. ++|+.|+
T Consensus 275 ~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~-----~~~~~~~ 349 (358)
T PLN00411 275 WTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFS-----GKEKTPL 349 (358)
T ss_pred HHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc-----ccccchh
Confidence 99999999999999999999999999999999999999999999999999999888777555444432 4566888
Q ss_pred CCCCCccc
Q 030367 165 LQNSTEDT 172 (178)
Q Consensus 165 ~~~~~~~~ 172 (178)
+.|+.|||
T Consensus 350 ~~~~~~~~ 357 (358)
T PLN00411 350 LLNGKNDQ 357 (358)
T ss_pred hhhccccc
Confidence 89998865
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.84 E-value=6.3e-20 Score=153.48 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
.++++||+|.++.|+..++++ +... .++.+++++.+.++....++. ..+. ...|..++|+|+++|+++|.+|++
T Consensus 155 ~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~l~lgv~~t~~~~~l~~~ 228 (293)
T PRK10532 155 GAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH---WSILPLGLAVAILSTALPYSLEMI 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999987775 5555 567777887777776643321 1111 124566789999999999999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
+++|.+|+++|++.++||++++++|++++||++++.+++|+++|+.|++...++++|+.|-
T Consensus 229 ~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 229 ALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998777665543
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=7.6e-20 Score=153.28 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHhcccc---ccchhcchhHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPA--LIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDVGLFAIAYSAVIGAAFLT 80 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~--~l~~t~~~~l~g~i~~~~~a~~~~~~~---~~~~~~~~~~~~~llylgi~~T~la~ 80 (178)
+++++|++|.+++||..++.++ ......+++..+.+.....+...+++. ..+.......|..++|+|+++|+++|
T Consensus 150 ~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~ 229 (299)
T PRK11453 150 AAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGY 229 (299)
T ss_pred HHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998766542 345667777777776665555444321 01111112468899999999999999
Q ss_pred HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
.+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..++++.
T Consensus 230 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~ 291 (299)
T PRK11453 230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRW 291 (299)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999887763
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.79 E-value=2.2e-18 Score=143.99 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+++++||+|.+..||..++. +...+.+++.++++.+.++....+.+... ......|..++|+++++|+++|.+|++
T Consensus 157 ~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~ 232 (292)
T PRK11272 157 IASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMY 232 (292)
T ss_pred HHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999875433 45678899999999888876654322111 112246889999999999999999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
++|+.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++.++++++
T Consensus 233 ~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 233 LLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998876553
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.78 E-value=2.3e-18 Score=144.21 Aligned_cols=130 Identities=5% Similarity=0.057 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
.++++||+|+++.||..++++ +.... +..+++.+.+.....+.....+ . ...|..++|.+ ++|+++|.+|++
T Consensus 163 ~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 163 IGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQPAMVF--S-LPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCccccC--C-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 588999999999999877764 55432 2334444444333322111111 1 23577788888 589999999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
++|+.+|++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..++.|++
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence 9999999999999999999999999999999999999999999999999987665433
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.73 E-value=2.4e-17 Score=138.08 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHhccccc---cchhc-chhHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLR-LDVGLFAIAYSAVIGAAFL 79 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~--~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~---~~~~~-~~~~~~~llylgi~~T~la 79 (178)
+++++|++|.++.||..+ ++ ++..++.+++..+++.++|++...++... .+... .......+.+.+++++..+
T Consensus 152 ~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR00817 152 ISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF 230 (302)
T ss_pred HHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence 488999999999999887 66 47999999999999999999876653211 11000 0001111222233333334
Q ss_pred H----HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 80 T----TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 80 ~----~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
+ .++++++++.||++++++.+++|++++++|++++||++++.+++|+++++.|+++.++.|++|+|.
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 4 455589999999999999999999999999999999999999999999999999999877666553
No 7
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.71 E-value=6.2e-17 Score=116.93 Aligned_cols=125 Identities=17% Similarity=0.366 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030367 9 MAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM 88 (178)
Q Consensus 9 l~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~ 88 (178)
++||.+.++.|+..++.+ +...+.+++..+++ ++++....+... ........+..+++.+++++++++.+|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 479999999999999985 89999999999998 666666554322 11112245778899999999999999999999
Q ss_pred hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 89 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 89 ~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+.++++++.+.+++|+++.+++++++||++++.+++|.++++.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.69 E-value=6.3e-16 Score=125.90 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
.++++|++|.++.|+..++++ ++...+.+++.++++.+.+.....++.. .+ ....|..++|.++++++++|.+|+
T Consensus 135 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 210 (260)
T TIGR00950 135 GSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWN 210 (260)
T ss_pred HHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999887764 2456666889999988888876543221 11 124577899999999999999999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF 133 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv 133 (178)
+++|+.++++++.+.+++|+++++++++++||++++.+++|.++++.|+
T Consensus 211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999986
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.64 E-value=3.3e-15 Score=125.16 Aligned_cols=131 Identities=10% Similarity=0.070 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~-~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
+++++||+|.++.|+..++. .+....+.|++.++.....+.. ......+.. .+..+..+++.+.+.|.++|.+|+
T Consensus 156 ~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~ 231 (296)
T PRK15430 156 GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ-NPMSLNLLLIAAGIVTTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999988864322 1234556667666655533221 111111111 112233444444447889999999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
+++|+.+|+++|++.+++|++++++|++++||++++.+++|+++|+.|+.+.....
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887766543
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.63 E-value=3.2e-15 Score=124.17 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL 82 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~---~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l 82 (178)
+++++|++|.++.|+..++.++ ....+.+++..+++...+.....+... +. .....++.++|.+.++++++|.+
T Consensus 151 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l 227 (281)
T TIGR03340 151 AAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYAL 227 (281)
T ss_pred HHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988876444431 122344555444333333222212111 11 11234667899999999999999
Q ss_pred HHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++
T Consensus 228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999875
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.51 E-value=2.3e-13 Score=116.90 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcC------hHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchh---c-chhHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFP------ALIVMLCYQYFFSTILAAMFSLTVVTEL--SAWKL---R-LDVGLFAIAYSAV 73 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~------~~l~~t~~~~l~g~i~~~~~a~~~~~~~--~~~~~---~-~~~~~~~llylgi 73 (178)
+++++||+|.++.|+..++++ ++..+..+++.+|++.++|+....|... ..+.. . ....+..++| .+
T Consensus 201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i 279 (350)
T PTZ00343 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KI 279 (350)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HH
Confidence 578999999999999887542 2455666778899999999887665321 11100 0 0112345667 56
Q ss_pred HHHHHHHHHHHH----HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 74 IGAAFLTTLLLW----CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 74 ~~T~la~~l~~~----~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+.++++|.+|+. ++++++|.+.++..++.|++++++|++++||++++.+++|.++++.|+++.++-
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 778999999995 999999999999999999999999999999999999999999999999987754
No 12
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.51 E-value=3.1e-13 Score=99.82 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
++|+.|++-.++.|.-.++. ||..-|.....+..+.+..+.+..+.....-.. .+..|.-++..| ++++++..+|++
T Consensus 10 LsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSG-la~glswl~Yf~ 86 (140)
T COG2510 10 LSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSG-LAGGLSWLLYFR 86 (140)
T ss_pred HHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHH-HHHHHHHHHHHH
Confidence 68999999999999888887 467777777777777776666544321110001 234577777778 699999999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
++|+-.++++..+.-+.|++++++++++|||+++..+++|.++|.+|.+++.+
T Consensus 87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999887653
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.48 E-value=4e-13 Score=109.54 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
.++.||++|++..+|.-+..+ .-.-+...|.++++..+|+.....+ +.-+ .+.....-+-.|+++|++.|.+-..
T Consensus 155 ~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~~l~---~p~ll~laLgvavlSSalPYsLEmi 229 (292)
T COG5006 155 GAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-PALF---SPSLLPLALGVAVLSSALPYSLEMI 229 (292)
T ss_pred HHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-hhhc---ChHHHHHHHHHHHHhcccchHHHHH
Confidence 578999999999999865544 3566778899999999999874321 1111 1122344566799999999999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 145 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~ 145 (178)
+++|+++..-+..+.+||.++++.|+++|||++|+.|++|.++|+.+..=+.+..+|+.+
T Consensus 230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~ 289 (292)
T COG5006 230 ALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV 289 (292)
T ss_pred HHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 999999999999999999999999999999999999999999999998766666555544
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.46 E-value=2.5e-12 Score=104.92 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHH-HHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLC-YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~-~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
+++++|++|.+..|+.. +.+ +..... +++........+... .+.+ .. .....+..+.+.|+++++++|.+|+
T Consensus 161 ~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 161 AAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL-SGFG---AP-ILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh-cccc---cc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999887 553 455555 555522222222211 1111 11 1123578899999999999999999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+.+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999998866
No 15
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.28 E-value=2e-11 Score=91.25 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 67 AIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 67 ~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l--~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
..+|+|+++.+++|.+|++++++.+.+.+..+..+.+++..+.++. ++||++++.+++|.++|++|+++++++++|
T Consensus 49 ~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 49 RAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 3688999999999999999999999999999999999999888885 899999999999999999999998865543
No 16
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.25 E-value=2.3e-10 Score=95.91 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcc-hhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL-DVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~-~~~~~~llylgi~~T~la~~l~~ 84 (178)
+++++|+...++.|.. .+++ |..+..++++++.+.++++..... +........ ..........+.++.++.+.+++
T Consensus 15 ~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (296)
T PRK15430 15 AAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFI 91 (296)
T ss_pred HHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999998764 6675 899999999999887766654332 111100000 01122333467778888999999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+++++.+++.+++..+..|++.++++++++||+++.++++|.++.+.|+.+..
T Consensus 92 ~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 92 WAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765
No 17
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.24 E-value=3e-10 Score=97.14 Aligned_cols=135 Identities=11% Similarity=0.187 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcccc-ccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
++++.||+|++++++..|+.+ ...+.++.-++|.+...+....+|... ...+ ++......+-...++..+-|.+..
T Consensus 175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p 251 (334)
T PF06027_consen 175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVP 251 (334)
T ss_pred HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999986 678888888888888887777666432 1111 111222222223445667788889
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
..+++.+|+...+-+....+++++++++++|+++++..++|.++|+.|+++....++++
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 99999999999999999999999999999999999999999999999999988665443
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.24 E-value=2.9e-10 Score=94.43 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+++++||.+.+..||..++.+ + .+.+....+++.+.++....... ..|+.. +..+...+..+.+.....+.++++
T Consensus 8 ~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 8 FSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRL-PATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-CCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998776643 3 34555566666666665542111 123221 123444444566677889999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
++++.+++.++++.+..|+++++++++++||+++.++++|.++++.|+++...+
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999987653
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.16 E-value=3e-10 Score=95.22 Aligned_cols=123 Identities=14% Similarity=0.230 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHH---HHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVM---LCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL 82 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~---t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l 82 (178)
+++++|+.|.+..|.. +++ |... ..+.++++++...+.. ...+ .+. ....+..++ .|++ +.++|.+
T Consensus 159 ~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~-~Gi~-~~ia~~~ 227 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAILLNIL-PGLM-WGIGNFF 227 (290)
T ss_pred HHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHHHHHH-HHHH-HHHHHHH
Confidence 5789999999998875 364 6777 4444455555444332 1111 121 122355555 8888 8999999
Q ss_pred HHHHHh-hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHHHHHhc
Q 030367 83 LLWCLM-RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWG 139 (178)
Q Consensus 83 ~~~~l~-~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~ 139 (178)
|..+.+ +.++++++.+..++|+.+++++++++||+.++.++ +|.++|+.|+.+....
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 999999 99999999999999999999999999999999999 9999999999987654
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.14 E-value=1.4e-09 Score=88.95 Aligned_cols=129 Identities=13% Similarity=0.195 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcccc---ccchh-cchhHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKL-RLDVGLFAIAYSAVIGAAFLTT 81 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~---~~~~~-~~~~~~~~llylgi~~T~la~~ 81 (178)
+++++|+...++.|. ..+.+ |..+..+.++++++.+.++.....+.. ..++. .....+..+...|++ ..+.+.
T Consensus 9 ~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 85 (256)
T TIGR00688 9 LASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGFNWW 85 (256)
T ss_pred HHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHHHHH
Confidence 578999999999887 45675 899999999999988766554332110 01110 011123345555655 668899
Q ss_pred HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
++++++++.+++.+++..+..|++++++++++++|+++.++++|.++.+.|+.++.
T Consensus 86 ~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 86 LFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988764
No 21
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=2.3e-09 Score=77.73 Aligned_cols=107 Identities=16% Similarity=0.329 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHH
Q 030367 34 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 113 (178)
Q Consensus 34 ~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~ 113 (178)
+.+.++.+.+.............++......+...+..|+++...++.+|++++++.+ ..++....+.|++++++|+++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444221111111111123444555577777789999999999999 488899999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 114 FGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 114 LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
++|+++...++|.+++++|+.++.+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999987653
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.07 E-value=3.5e-09 Score=86.15 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030367 11 FIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA 90 (178)
Q Consensus 11 ~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~ 90 (178)
|+...+..|...++..++.....+.++.+.+.+.++.... . ....+...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666777665544578888899988888776654321 1 112344556668888889999999999999
Q ss_pred CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 91 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 91 ~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
+++.++++..+.|+++.+++.+++||++++.+++|.++.+.|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988764
No 23
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.05 E-value=4.3e-09 Score=90.95 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030367 7 KMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC 86 (178)
Q Consensus 7 aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~ 86 (178)
-.++|+.+.++.|...+.--++..+.++.+.+++++++++....+... .++......|..+..+|+++ .+.+.+++++
T Consensus 21 ~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~~~~~~~~g 98 (358)
T PLN00411 21 TETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SMYVITGYIG 98 (358)
T ss_pred HHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 346888999999988866335889999999999999988877554211 01100112355566677777 4667789999
Q ss_pred HhhcCcceeeechhhHHHHHHHHHHHH------hcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 87 LMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 87 l~~~~~~~~sl~~~l~Pv~a~i~g~l~------LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
+++.+++.++++.+..|++++++++++ ++|+++..+++|.++-++|+.++...+
T Consensus 99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999 699999999999999999999877543
No 24
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.00 E-value=1.3e-08 Score=84.96 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+..+.|+...+..|...+..+ |..++.+.+.++++.++++........ . ....+...+..|++...+.+.++++
T Consensus 15 ~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~---~--~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 15 ALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL---P--TLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998777674 899999999999999887765432111 1 1124555566777777778888999
Q ss_pred HH-hhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 86 CL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 86 ~l-~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+. ++.+++.++++.++.|+++.+++++ +||+++.++++|.++.+.|+++....
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 98 9999999999999999999999985 79999999999999999999987654
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.96 E-value=2.7e-08 Score=74.85 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHhhc------ChHHHHHHHHHHHHHHHHHHHHHHhcccccc--ch-hc------chhHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEF------PALIVMLCYQYFFSTILAAMFSLTVVTELSA--WK-LR------LDVGLFAIAY 70 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~------~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~--~~-~~------~~~~~~~lly 70 (178)
.+.++.|++.++.|+..++. -+++.+..+....+.+.+++.+++.|..... .. .. ....+..++.
T Consensus 7 ~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T PF03151_consen 7 ASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLIL 86 (153)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHH
Confidence 57889999999999987772 2588899999999999999998887653211 10 00 1122344444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 71 SAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 71 lgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
.|+++ .+-....++.+++.+|...++...+-.+...++|++++||++++.+++|.++.+.|+++.+
T Consensus 87 ~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 87 SGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 44433 3455667889999999999999999999999999999999999999999999999987643
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.96 E-value=1.9e-08 Score=84.20 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 030367 14 LEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL 93 (178)
Q Consensus 14 y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~ 93 (178)
++++.|...+.++.|+.++.+++.++++...+............+ ...|..++-.|++. .+.+.++++++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKIS---SALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 445667777776668999999999988776554211111111111 23566677778875 67789999999999999
Q ss_pred eeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 94 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 94 ~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
.++++....|++.+++++++++|+++..+++|.+++++|+.+..
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998653
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.93 E-value=2.7e-08 Score=83.35 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+++++|+...+..|...++.+ |..++++.++++++.++++. ..+. .. +..++-.|++.....+.+++.
T Consensus 11 ~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~--~~~~-~~--------~~~~~~~g~~~~~~~~~~~~~ 78 (299)
T PRK11453 11 LVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFV--ARPK-VP--------LNLLLGYGLTISFGQFAFLFC 78 (299)
T ss_pred HHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHh--cCCC-Cc--------hHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888885 89999999999877655432 1111 01 112222344444555667778
Q ss_pred HHhh-cCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 86 CLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 86 ~l~~-~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+.++ .+++.++++....|+++.++++++++|+++.++++|.++.+.|+.+...+
T Consensus 79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 8887 57789999999999999999999999999999999999999999887643
No 28
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.92 E-value=2.7e-08 Score=85.55 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030367 13 ILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGP 92 (178)
Q Consensus 13 ~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~ 92 (178)
.+.+..|..++..|-|+.++.+|++++.+...++........+... .....+..++-+|++.... +...+.++++.++
T Consensus 63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~sv 140 (350)
T PTZ00343 63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAV 140 (350)
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccH
Confidence 4566677777777558999999999998876554322111111111 0123456677778877654 6667799999999
Q ss_pred ceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 93 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 93 ~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+.++++..++|++++++++++++|+++.++++|.++++.|+.+..
T Consensus 141 s~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 141 SFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999999999999865
No 29
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.89 E-value=3.1e-08 Score=72.13 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 72 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 72 gi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
++++-++++.+|.+++|+.+.+.+.....+.|++++++|++++||++++.+++|.++|+.|+.++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4477788999999999999999999999999999999999999999999999999999999987653
No 30
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.87 E-value=2e-08 Score=82.15 Aligned_cols=100 Identities=5% Similarity=-0.050 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH---HhccccccchhcchhHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSL---TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTL 82 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~---~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l 82 (178)
+++++||+|.+..|+..+ .+ ...... +.+...++.. ................|..+++.|++ |.++|.+
T Consensus 153 ~aa~~~a~~~i~~~~~~~-~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKN-TD-LAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-cchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence 578999999999888643 32 222221 1122222221 11111110011111357788888876 8999999
Q ss_pred HHHHHhhcCcceeeechhhHHHHHHHHHHHH
Q 030367 83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVII 113 (178)
Q Consensus 83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~ 113 (178)
|++++|+.++++++++.+++|++++++|++.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874
No 31
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.79 E-value=1.7e-07 Score=78.41 Aligned_cols=124 Identities=12% Similarity=0.005 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+++++|+...+..|...+.+| |..+.++.+.+++++++++.. . + ..+.. .+..++. +.+.-.+.+.++++
T Consensus 11 ~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~--~-~--~~~~~---~~~~~~~-~~l~~~~~~~~~~~ 80 (295)
T PRK11689 11 IAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG--F-P--RLRQF---PKRYLLA-GGLLFVSYEICLAL 80 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc--c-c--ccccc---cHHHHHH-HhHHHHHHHHHHHH
Confidence 578899999999999888886 899999999999988776521 1 1 11100 1111222 22233333444555
Q ss_pred HHh----hcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 86 CLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 86 ~l~----~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+++ ..++..++++.++.|++++++++++++|++++.+++|.++-+.|+++....
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 554 567788899999999999999999999999999999999999999887643
No 32
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.76 E-value=4.5e-07 Score=76.24 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHH--hccccccchh--cchhHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKL--RLDVGLFAIAYSAVIGAAFLT 80 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~--~~~~~~~~~~--~~~~~~~~llylgi~~T~la~ 80 (178)
++.++-++..++++|..++++ ++.....+.-+++.+..++.... .++....++. ..+..+..++. -.++..++.
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~-~s~~~~~g~ 239 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLL-FSLTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Confidence 356778899999999988875 46677788888888877776665 2211111111 11122333333 333556667
Q ss_pred HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
...++..++.||...++...+--+++++++++++|+++++.+++|.++++.|..+-...|+|++
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 7778899999999999999999999999999999999999999999999999999888776653
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.51 E-value=2.9e-06 Score=70.86 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
.-|++|+.|..+-|+. + ++ +.+-....++.-....+......+....-........+.-++..|+ .|+++..++..
T Consensus 155 ~la~sf~~Ygl~RK~~-~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKL-K-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhc-C-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHH
Confidence 3478999999964443 2 33 3444444444444444444343332221011011223555566666 78899999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+-|+++-+..+++.|++|..-.++|++++||+++..+.+..++|-.|+.+..+..-
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886543
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.49 E-value=4.6e-06 Score=67.83 Aligned_cols=134 Identities=14% Similarity=0.246 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
++++.|+......|...+.............+.+.+...+... .+.. ...+.. ..+...+..+.+.....+.+|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (292)
T COG0697 14 LWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEPR-GLRPAL--RPWLLLLLLALLGLALPFLLLFL 89 (292)
T ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcc-cccccc--cchHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777766654222444555566666655332222 1110 011111 11344556688888899999999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~-l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
++++.++..+....+..|++..++++ ++++|++++.++.|..+.+.|++++.++....
T Consensus 90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 99999999999999999999999997 77799999999999999999999988765543
No 35
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.41 E-value=1.6e-06 Score=63.97 Aligned_cols=70 Identities=19% Similarity=0.374 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 72 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 72 gi~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.+++-+++|.++.+++|+++.+.+ +++.-+--+..++.|++++||++++.+++|.++|+.|++..+...+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 455667899999999999988865 3445678888999999999999999999999999999999876554
No 36
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.33 E-value=4.5e-06 Score=71.90 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHH---HHHHHHHHHHHHHHHHHHHhcc-ccccchhcchhHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIV---MLCYQYFFSTILAAMFSLTVVT-ELSAWKLRLDVGLFAIAYSAVIGAAFLTT 81 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~---~t~~~~l~g~i~~~~~a~~~~~-~~~~~~~~~~~~~~~llylgi~~T~la~~ 81 (178)
++|+.||+|+++.||...+....+. +..+.-++.-+.+.|...+... ....+..+.......+++.+.++|+++=+
T Consensus 254 ~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDy 333 (416)
T KOG2765|consen 254 LSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDY 333 (416)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHH
Confidence 5799999999999988766531222 2222333333333333322211 01112222223455678889999999999
Q ss_pred HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+|.++.-..+|-.+.+-+.++-..+++...++=|.++++..++|.+.|++|.++++...+
T Consensus 334 lW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 334 LWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 999999999999999999998889999999999999999999999999999999987654
No 37
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.27 E-value=2.4e-05 Score=65.48 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccch-hcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~-~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
.|-+.|+.-..+.|- .+..| +..+.+.....+...++.+-....+...-++ ...+..++..+..++..+ .-+.+|.
T Consensus 14 ~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~-~nW~lfi 90 (293)
T COG2962 14 LAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG-LNWWLFI 90 (293)
T ss_pred HHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHhh
Confidence 455667777776554 56665 6788888888777776665554432211111 122234566666565543 5889999
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
|++++-..-.+|+=++++|++.+++|.++++|+++..|++..++-.+||..-.|.
T Consensus 91 WAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 91 WAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred eecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886653
No 38
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.18 E-value=4.6e-05 Score=64.08 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhcC-h--HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030367 10 AFIILEFFQAITLKEFP-A--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC 86 (178)
Q Consensus 10 ~~A~y~i~~~~~~~~~~-~--~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~ 86 (178)
++..|.+++.++.++.. . +..++..|++...+...+.......+... . ..+...+..+ +...++-.+.+++
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~-~~~~~~~~~~~~a 84 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSR-K----IPLKKYAILS-FLFFLASVLSNAA 84 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCC-c----ChHHHHHHHH-HHHHHHHHHHHHH
Confidence 45567778888776632 3 77899999999888877665544311111 1 1122222223 3455677888999
Q ss_pred HhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367 87 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 145 (178)
Q Consensus 87 l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~ 145 (178)
+++++...-.++-...|+..++++++++|++.+.+++++.+++.+|+.+....+.+.++
T Consensus 85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999999999999999999999999999999999999999999998877655444
No 39
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.16 E-value=3.1e-05 Score=64.98 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHH-HHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLF-AIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~-~llylgi~~T~la~~l~~ 84 (178)
+++++|+...+..|+.. ..+ +..+. .+.+|++...........+. ... . ..+. +++. |+ .=+++...|+
T Consensus 8 ia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~-~-~~~~~g~l~-G~-~w~ig~~~~~ 77 (290)
T TIGR00776 8 IPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FWA-L-SIFLVGLLS-GA-FWALGQINQF 77 (290)
T ss_pred HHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccc-c-HHHHHHHHH-HH-HHHhhhhhHH
Confidence 57899999999888764 343 33333 35556665554444332211 110 0 1111 2221 11 1456789999
Q ss_pred HHHhhcCcceeeechh-hHHHHHHHHHHHHhcCCcchHH----HHHHHHHHHHHHHHHhc
Q 030367 85 WCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~-l~Pv~a~i~g~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~ 139 (178)
.++|+.|.+.+-.+.+ +.|+++.+++.+++||+.+.++ ++|.++++.|++++...
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 9999999999988888 8999999999999999999999 99999999998887544
No 40
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.13 E-value=5.8e-06 Score=70.36 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHh--hcC-hHHHHHHHHHHHHHHHHH-HHHHHhccccc-cchh-cchhHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLK--EFP-ALIVMLCYQYFFSTILAA-MFSLTVVTELS-AWKL-RLDVGLFAIAYSAVIGAAFL 79 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~--~~~-~~l~~t~~~~l~g~i~~~-~~a~~~~~~~~-~~~~-~~~~~~~~llylgi~~T~la 79 (178)
.+.++.+...++++++.+ ++. +++.+..++.-++.+.++ |+....+++.. .+.. .+.......++.. ++..+-
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~ 248 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLL 248 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHH
Confidence 356778888999998884 322 578888888888888888 88777665432 0000 1111223333333 233333
Q ss_pred HHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccccc
Q 030367 80 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 145 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~ 145 (178)
....++.+.+.+|..-++...+--++.++.|+++++|++++.++.|.++.++|+++..+.|.++++
T Consensus 249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 455678899999999999999999999999999999999999999999999999999988776654
No 41
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.11 E-value=1.8e-05 Score=57.50 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 72 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 72 gi~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
.+++-+++|.++..++|+++.+.+ +++.-+.-+..++.|++++||++++.+++|.++|+.|++..+...
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455667899999999999988755 445667888899999999999999999999999999999987654
No 42
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00025 Score=58.23 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
..|+-+..+++ ++.++.++-+.-+...||-.-|+.+..--.|+++.++++++.+++.+||+|.++++.|+..=.
T Consensus 239 ~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 34666666666 889999999999999999999999999999999999999999999999999999999988644
No 43
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.93 E-value=0.00027 Score=59.08 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
+++++|+....+.|...++.+ |..+.++.++++++.++++...... .++ ...+...+..|++ ..+.+.++++
T Consensus 19 la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~~---~~~~~~~~~~g~~-~~~~~~~~~~ 90 (293)
T PRK10532 19 IAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RFA---KEQRLPLLFYGVS-LGGMNYLFYL 90 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cCC---HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 578899999999998888885 8999999999999888765432111 111 1234444445554 4566778999
Q ss_pred HHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 86 CLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
++++.+++.++.+.+..|++..+++. |+.. ...+.++.++|+++..
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL 136 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence 99999999999999999999988773 5554 3456667788887754
No 44
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.92 E-value=2.4e-05 Score=62.77 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
++..+++..+-.+.+|+.++...+....++++++.+++++++||++++.+++|+.+++.|+++
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 345667777899999999999999999999999999999999999999999999999998754
No 45
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.89 E-value=6.8e-05 Score=54.07 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
+++-.++|.+...++|+++-..+ +++.-+--+.+++.|++++||++++..++|.+++++|+...+...
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 34446789999999999887743 778888889999999999999999999999999999999887653
No 46
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.86 E-value=0.00042 Score=50.33 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+.+-+++|.+...++|+++.+.+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44556889999999999988754 667778888999999999999999999999999999998864
No 47
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.76 E-value=0.00015 Score=52.24 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+.+-+++|.+...++|+++.+.+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 45557899999999999988744 67777888999999999999999999999999999999987643
No 48
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.65 E-value=2.9e-05 Score=64.55 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 79 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 79 a~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
+-.+.+|+.++.+-+.++++++..|+++.+++|++|+|++|....+|..+.+.|+.+..+++
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 44566788999999999999999999999999999999999999999999999999877654
No 49
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.59 E-value=4e-05 Score=63.74 Aligned_cols=77 Identities=23% Similarity=0.197 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
..|+-++.+|+++ .+++.+-..++++--+.++++..+..-++|.++-++++||.++++.++|+++|+.....+..+|
T Consensus 251 kdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 251 KDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred cceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 3466677788866 5688899999999999999999999999999999999999999999999999998877766544
No 50
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.58 E-value=0.00019 Score=50.46 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccee-eechhhHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 129 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lI 129 (178)
+.+-+++|.++.+++|+++.+.+ +++.-+..+...+.|++++||++++.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34566889999999999999888 6667789999999999999999999999999886
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.47 E-value=0.0028 Score=52.95 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcCcceeeechhhHHHH-HHHHHHHHhcCCcchHH----HHHHHHHHHHHHHHHhccccccc
Q 030367 75 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILF-STVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWGKAKEEN 145 (178)
Q Consensus 75 ~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~-a~i~g~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~~~~~~~ 145 (178)
.=.++...|+++.++.|.+++-.+..-..++ +.+.|++++||.-+..+ +++.++++.|+++..++++++++
T Consensus 54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3457899999999999999998888665555 78899999999877654 44788899999998877765554
No 52
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.39 E-value=0.0041 Score=46.87 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
++...-++...+..++.++..+|+.-+.+.+..|.+.+..+.++.++. .+....+..|+. |+|=+..++--....+
T Consensus 8 ~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~--~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 8 LAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA--YLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH--hccHHHHHHHHHHHHH
Confidence 345556666666667766665589999999999999988887766542 221111112332 2233344455667788
Q ss_pred HHhhcCcceeeechhh-HHHHHHHHHHH----HhcCCcchHHHHHHHHHHHHHHH
Q 030367 86 CLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 86 ~l~~~~~~~~sl~~~l-~Pv~a~i~g~l----~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
.++++|++.+...... +=+.+.++..+ .-.+++++..++|.++++.|+++
T Consensus 84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999977766655 45555666664 24578999999999999999864
No 53
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.16 E-value=0.011 Score=50.98 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 65 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 65 ~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
|+--+.+++ .=+.|-.+++.+.++.+.+.+.++....-++++++++++|+|++++.|++|.++.++|+.++.....
T Consensus 79 ~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 79 WWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 444333454 4457899999999999999999999999999999999999999999999999999999998887654
No 54
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.14 E-value=0.00085 Score=55.17 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
+.-.+++.++++++|+.--+.....-++++++++++|+.+++..||++..++.+|+.+++......+
T Consensus 29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 4567778899999999999999999999999999999999999999999999999999887765543
No 55
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=96.92 E-value=0.012 Score=48.99 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHH-HHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSA-VIGAAFLTTLLL 84 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylg-i~~T~la~~l~~ 84 (178)
.+|-+||+.++...-+.|+.+ ...+....-++|++...+= ++++... .....+ .|--..|+. .++-.+=|.+.-
T Consensus 173 ~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w--~~~i~~yl~f~L~MFllYsl~p 247 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHW--DSAIFLYLRFALTMFLLYSLAP 247 (336)
T ss_pred ecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEee--hHHHHHHHHHHHHHHHHHHhhH
Confidence 356778888887777777774 6778778888898888766 4444321 111111 122223333 333444555566
Q ss_pred HHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 85 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 85 ~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
..+|..|++...+-....-.++.+. ..+|=+++|.-.+..+.+..|+++.
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 6788889988888888888888887 6677789999999999999998875
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.90 E-value=0.015 Score=50.33 Aligned_cols=128 Identities=11% Similarity=0.001 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH-----hcccc-ccchhcchhHH-HHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLT-----VVTEL-SAWKLRLDVGL-FAIAYSAVIGAAF 78 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~-----~~~~~-~~~~~~~~~~~-~~llylgi~~T~l 78 (178)
++++||+-+++-+|+ .|+.+ .+.. |- +++++..++..+ ..++. ..........+ .+++. |+ -=.+
T Consensus 14 i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~-G~-~W~i 85 (345)
T PRK13499 14 IGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF-GA-LWGI 85 (345)
T ss_pred HHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH-HH-HHHh
Confidence 688999999998887 55553 4443 44 222232222221 11111 11111111122 22222 33 2346
Q ss_pred HHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHHHHHHHhccc
Q 030367 79 LTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGL-------FLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 79 a~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~l-------t~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+...|..++|++|-+++-.+ +-+.=+.+.+++.+++||-- ....++|.++++.|+.+..+.-.
T Consensus 86 G~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 86 GGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred hhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999976554 44577889999999999754 23578899999999999987433
No 57
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0067 Score=50.88 Aligned_cols=127 Identities=16% Similarity=0.238 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhccccccchhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030367 15 EFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL--DVGLFAIAYSAVIGAAFLTTLLLWCLMRAG 91 (178)
Q Consensus 15 ~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~--~~~~~~llylgi~~T~la~~l~~~~l~~~~ 91 (178)
--+|.+..+.+| +...+..+...+|...++......++-...|..-. +....+.+++=-..+-++...-...++..|
T Consensus 206 GNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fG 285 (367)
T KOG1582|consen 206 GNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFG 285 (367)
T ss_pred hHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhc
Confidence 334555555554 23445555555666555544443332223343211 111222222222334455555566788899
Q ss_pred cceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 92 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 92 ~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+..++..+..---++.+++++++..|+|.+..-|+.+|+.|+++...+|+
T Consensus 286 A~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 286 ALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999888774
No 58
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=96.72 E-value=0.061 Score=45.77 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc-c----cchh-cchhHHHHHHHHHHHHHHHHHHHH---HHHHhhcCcceeee
Q 030367 27 ALIVMLCYQYFFSTILAAMFSLTVVTEL-S----AWKL-RLDVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYVSM 97 (178)
Q Consensus 27 ~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~----~~~~-~~~~~~~~llylgi~~T~la~~l~---~~~l~~~~~~~~sl 97 (178)
+|+.......-.-.+.++|..+.+|+.. . .|.. .....+..+.+++. +..++|.+- +..+.+.+.-..|+
T Consensus 196 ~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSI 274 (349)
T KOG1443|consen 196 NPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSI 274 (349)
T ss_pred CCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeH
Confidence 3555444444445556677777777532 1 1221 11123444444333 334455443 34567788889999
Q ss_pred chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
..-..=+...++|.++++|+++...++|..+.+.|+.+-
T Consensus 275 aGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 275 AGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998875
No 59
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.013 Score=49.70 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhcccc-ccch--hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030367 15 EFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWK--LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA 90 (178)
Q Consensus 15 ~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~-~~~~--~~~~~~~~~llylgi~~T~la~~l~~~~l~~~ 90 (178)
...|+++.+++. ++..+....-+++++..... ++..+.. .... -..+..+.-++-... +.++++.+-++-+++-
T Consensus 188 n~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 188 NATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERF 265 (327)
T ss_pred HhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhc
Confidence 345677776543 34555555555555554433 3332211 1111 111234555544455 4556888888999999
Q ss_pred CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 91 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 91 ~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
|+-.-..++..=-+++++++.+.+|.++++.|++|..+++.|+++-..-|+|
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999986654443
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.60 E-value=0.0015 Score=55.41 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 72 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 72 gi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
|+...+++..+.+.+....+++.++.+..+.=++.++++..++||+++..+++|.++++.|..+...
T Consensus 56 G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 56 GLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3333445556667788888999999999999999999999999999999999999999999876553
No 61
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.043 Score=42.01 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 85 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~ 85 (178)
++..+-.+...+..|+.+...+|+.-..+.++.|.+.+..+..+.++.+ .+....+..|+..+- |+++..+ -+.-..
T Consensus 12 ~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~G-G~lGa~~-vt~s~~ 88 (150)
T COG3238 12 LAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWIG-GLLGAIF-VTSSIL 88 (150)
T ss_pred HHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHHc-cchhhhh-hhhhHH
Confidence 4455556666666677666656888888999999999988877744322 222111112332221 3333221 122344
Q ss_pred HHhhcCccee-eechhhHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 86 CLMRAGPLYV-SMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 86 ~l~~~~~~~~-sl~~~l~Pv~a~i~g~l~Lg----E~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
...|+|++.. .+...-+=+.+++++-+=+. -++++..++|.+++++|+++.++++
T Consensus 89 l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 89 LAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 5667777643 33444455566666655444 6789999999999999977665443
No 62
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.43 E-value=0.045 Score=45.01 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHHHHHHHHHHhcccc-ccchhcchhHHHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQ-YFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLL 83 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~-~l~g~i~~~~~a~~~~~~~-~~~~~~~~~~~~~llylgi~~T~la~~l~ 83 (178)
.++++-++..++..|++|+...++..--.| .+.|.++.++.....+.+. ..... . ..+-...+..++..+++=.+-
T Consensus 121 ~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~-f-~G~~~~~~~~i~~~a~gGllv 198 (244)
T PF04142_consen 121 AAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF-F-HGYSWWVWIVIFLQAIGGLLV 198 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc-h-hhcchHHHHHHHHHHHhhHHH
Confidence 456777888888888888864344444444 4445544444433322111 10000 0 011122333444555555566
Q ss_pred HHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 030367 84 LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 129 (178)
Q Consensus 84 ~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lI 129 (178)
...+|+.+...=+.-..+.=+.+.+++++++|.+++....+|.+++
T Consensus 199 a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 199 AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 6778888888777888888899999999999999999999998763
No 63
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.14 Score=44.09 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhcc-ccccchh----cchhHHHHHHHHHHHHHHHHHH
Q 030367 7 KMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVT-ELSAWKL----RLDVGLFAIAYSAVIGAAFLTT 81 (178)
Q Consensus 7 aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~-~~~~~~~----~~~~~~~~llylgi~~T~la~~ 81 (178)
+|..-+.-.++-.+++|+-..++.+--.|+-+-+++...+...... ....|.. .....|+.++-.++.+ .
T Consensus 191 ~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gG-----L 265 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGG-----L 265 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccc-----h
Confidence 4555566666777777764435666666665545444444443321 1111221 1112344444444433 3
Q ss_pred HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
+-...+|+.+-..=+....+.-+++.+.++.+++-++|....+|..+++..+.+....+.+
T Consensus 266 lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 266 LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 4444555555554455556777889999999999999999999999999999998844443
No 64
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.32 E-value=0.007 Score=44.21 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcCcceeeech-hhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~-~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
.+-.+|++.+.+.+-+.+.... .+.=+++++.|+++.+|..+...++|.++|+.|+.++
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 4567788899999999998886 7888999999988878888989999999999998753
No 65
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.25 E-value=0.039 Score=45.19 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhh--cChHHHHHHHHHHHHHHHHHHHHHHhccc-cccchhcc-hhHHHHHHHHHHHHHHHHHHH
Q 030367 7 KMMAFIILEFFQAITLKE--FPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRL-DVGLFAIAYSAVIGAAFLTTL 82 (178)
Q Consensus 7 aal~~A~y~i~~~~~~~~--~~~~l~~t~~~~l~g~i~~~~~a~~~~~~-~~~~~~~~-~~~~~~llylgi~~T~la~~l 82 (178)
.+++-+.|.+..|+..|- .. ...-..+.-+.+--.++.+++++|.. +.+..... .....+++-.|+ +++.--..
T Consensus 163 NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~ 240 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYC 240 (309)
T ss_pred hhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhc
Confidence 467778888887766432 22 35566677777777777777777642 11111111 123345555555 44444455
Q ss_pred HHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 030367 83 LLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 131 (178)
Q Consensus 83 ~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~ 131 (178)
-.|+++-.+.+.-|+...++-.-.++.|.++++|+.+...+....+-..
T Consensus 241 saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 241 SAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred cceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988877543
No 66
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.1 Score=44.44 Aligned_cols=134 Identities=10% Similarity=0.142 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhcccc------ccchhcchhHHHHHHHHHHHHHHHHH
Q 030367 8 MMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL------SAWKLRLDVGLFAIAYSAVIGAAFLT 80 (178)
Q Consensus 8 al~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~~~~------~~~~~~~~~~~~~llylgi~~T~la~ 80 (178)
+++-+.|.+..|+..+.-. +...+..+.-+..-..+..+.+++++-. +.|.. ...+..++..++.+-++.|
T Consensus 166 ~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv~gf~isy 243 (314)
T KOG1444|consen 166 CLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCVMGFGISY 243 (314)
T ss_pred HHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHHHHHHHHH
Confidence 4445566666666544321 2345666777777777777766654311 11221 2346778888888888888
Q ss_pred HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
..+ |+.+..+++..++.....=..+.+.+.++.++++++..++|..+-+.|=.+.+..+.+++
T Consensus 244 ~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 244 TSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 765 788888999999998777777888888888999999999999997766555555554443
No 67
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.46 E-value=0.15 Score=42.58 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHH
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG----SLVGAVIIVIGFYV 135 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~----~iiG~~lIl~Gv~l 135 (178)
++-..+..+.++.|.+.+=.+.-+..+++.+.|.++|||+=+.+ .++|.++|+.|..+
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 46667888999999999999999999999999999999998765 55688888777553
No 68
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.024 Score=47.64 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhccccccch--hc-chhHHHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LR-LDVGLFAIAYSAVIGAAFLTT 81 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~-~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~--~~-~~~~~~~llylgi~~T~la~~ 81 (178)
.|+++-|+..+..||......+ ...++++.-..+.++++|.-.+.++-...+. .. ....|..+...|+++-.++|.
T Consensus 192 laSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv 271 (347)
T KOG1442|consen 192 LASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV 271 (347)
T ss_pred HHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe
Confidence 5778888888888876554433 5678888888888888888665432111111 11 113456666777776666554
Q ss_pred HHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 82 LLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 82 l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
- .|=+|-.+|-.=-+...---..=.++++.+++|..+..-|-|-++|+.|-....+.|++++++
T Consensus 272 T-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 272 T-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred e-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 3 233566666666666666666778899999999999999999999999988888877766543
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.70 E-value=0.014 Score=48.21 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHHHHHhcccc
Q 030367 77 AFLTTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 77 ~la~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~~~~ 142 (178)
.+++..|+++++..|.+++...+.- +=+-+.++|++.+||.-+..++ +..++++.|+++..+.++.
T Consensus 70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 3688999999999999999888776 5556789999999999998754 4567788888887665543
No 70
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.12 Score=44.49 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=55.5
Q ss_pred HHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 81 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 81 ~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.+++.+..+++|+.-.+.+.+-=+.++++.+++|+++++..||...++...|+.++++...
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 3667778889999999999999999999999999999999999999999999999995443
No 71
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.66 Score=39.17 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhhc----CcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 73 VIGAAFLTTLLLWCLMRA----GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~----~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+++..+++..-.+++..+ .+-.+++...+--.++.+++++.+..++++++++|+++++.|-++..
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444 44467778888899999999999999999999999999999977654
No 72
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=93.77 E-value=0.073 Score=38.28 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 107 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 107 ~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
+.++++++||++++.++.|.++++.+++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456789999999999999999999998764
No 73
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.76 E-value=0.025 Score=48.38 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=71.7
Q ss_pred HHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcce
Q 030367 17 FQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLY 94 (178)
Q Consensus 17 ~~~~~~~--~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~~~~~~ 94 (178)
+.|..++ ..+-|..++..+...+.+.....-.+--.+.. +......+..++-+|++- .++..+-+.++++.+.+.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF 111 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence 3456666 44457888888777777776655443211111 111123466666666654 357788889999999999
Q ss_pred eeechhhHHHHHHHHHHHHhcCCcch
Q 030367 95 VSMFKPLAILFSTVMGVIIFGDGLFL 120 (178)
Q Consensus 95 ~sl~~~l~Pv~a~i~g~l~LgE~lt~ 120 (178)
.-..-.++|++.+++++++.+|+.+.
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~ 137 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSS 137 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcc
Confidence 99999999999999999999999887
No 74
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.74 E-value=0.025 Score=45.53 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.+-++|..++++++|+.++.+..-+--|..+++++.||+++....++..++-+.|+.+..+..+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 3577899999999999999999999999999999999999999999999999999887665544
No 75
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.017 Score=49.26 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
++.-+++-..-+-+-...+++.++.+..+.-++.++++..+|+|++++...+|+++.++|-.+......++
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 33333344444444445688889999999999999999999999999999999999999965544333333
No 76
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.41 E-value=0.045 Score=47.68 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
+|.+.++-++++.+.+...+.....-+|+.++|.++.+|++++...++..+=+.|++++..++.+.
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 567788899999999999999999999999999999999999999999999999999988776544
No 77
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.44 E-value=0.3 Score=34.83 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 105 FSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 105 ~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+-+.++++.++|++.|.++.|..+++.|++++-
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 335689999999999999999999999998765
No 78
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=91.91 E-value=1.1 Score=37.90 Aligned_cols=69 Identities=28% Similarity=0.291 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCC--cch----HHHHHHHHHHHHHHHHHhccc
Q 030367 73 VIGAAFLTTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDG--LFL----GSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 73 i~~T~la~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~--lt~----~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+.+...-...-|+++++.+++.+....+. --.++++-|.++++|. +++ ....|..+++.|+++....|+
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 33444445555789999999977766655 6677788888899976 444 356678889999998765443
No 79
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.08 E-value=0.68 Score=38.42 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhh-cC--h--------HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchh--HHHHHHHHHHHH
Q 030367 9 MAFIILEFFQAITLKE-FP--A--------LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDV--GLFAIAYSAVIG 75 (178)
Q Consensus 9 l~~A~y~i~~~~~~~~-~~--~--------~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~--~~~~llylgi~~ 75 (178)
+||=+|-+.|.|..+. |. + .+.+.+.|+....++.=++..+.... ..+..... ..-++-|++
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~--~~D~t~~~~YaAcs~sYLl--- 97 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT--EIDNTPTKMYAACSASYLL--- 97 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc--cccCCcchHHHHHHHHHHH---
Confidence 5777888888887654 42 1 45566777777776654443332211 11111100 111233332
Q ss_pred HHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 76 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 76 T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
|..--|.+++.++=-..-+--.--|+=.+++|+++.+..-+|....=..+|++|+.+..++.+|....
T Consensus 98 ---AMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~ 165 (337)
T KOG1580|consen 98 ---AMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA 165 (337)
T ss_pred ---HHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 33334666777665545555667788889999999999999999999999999999999876665543
No 80
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=3.8 Score=35.06 Aligned_cols=123 Identities=11% Similarity=0.166 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHH----HHHHHhhcChHH--HHHHHHHHHHHHHHHHHHHHh--ccccccchhcchhHH--HHHHHHHHHH
Q 030367 6 QKMMAFIILEFF----QAITLKEFPALI--VMLCYQYFFSTILAAMFSLTV--VTELSAWKLRLDVGL--FAIAYSAVIG 75 (178)
Q Consensus 6 ~aal~~A~y~i~----~~~~~~~~~~~l--~~t~~~~l~g~i~~~~~a~~~--~~~~~~~~~~~~~~~--~~llylgi~~ 75 (178)
+++++|++-.++ -|-.+..|+-|. .+...|.+.+.+.....-..- +.++-+|.. ...| ..++|.+-+-
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLF 92 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHH
Confidence 566666665443 333344444334 444599999888777665532 112222321 1234 3567766655
Q ss_pred HHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 76 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 76 T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
|. .+++|+++.....++-.+.|++.++...+++|-+++...+.....+++|-...
T Consensus 93 t~------~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 93 TG------SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred Hc------cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 54 45788999999999999999999999999999999999999888888876553
No 81
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=89.54 E-value=3.3 Score=37.33 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhccccccccccccC
Q 030367 118 LFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRG 151 (178)
Q Consensus 118 lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~ 151 (178)
++..|++...++++|+++..+.++++++++..++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~~~~~~ 287 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREAPGALRG 287 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Confidence 7889999999999999887765554444433333
No 82
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=88.65 E-value=19 Score=32.85 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=20.8
Q ss_pred echhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 97 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 97 l~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
.+....|+-+.+.|.+.=.-.+.....++++.++.+..+..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 44445677777777654333333334444444444444443
No 83
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=87.32 E-value=9.7 Score=28.64 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHHhcccc
Q 030367 64 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVMWGKAK 142 (178)
Q Consensus 64 ~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~l-Il~Gv~l~~~~~~~ 142 (178)
.+....-+.+++.++-|..-.++.||.|.++.+.+... .+.+.|.+++. + +|..+ -+.|.++.++-++|
T Consensus 32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga~---iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~~ 101 (140)
T PF04306_consen 32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGAI---IGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRGK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhCC
Confidence 35556677888999999999999999999999988665 78888887765 1 14333 45778888875444
Q ss_pred c
Q 030367 143 E 143 (178)
Q Consensus 143 ~ 143 (178)
+
T Consensus 102 ~ 102 (140)
T PF04306_consen 102 D 102 (140)
T ss_pred C
Confidence 3
No 84
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=86.52 E-value=0.99 Score=34.35 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=18.8
Q ss_pred hhcCcceeeechhhHHHHHHHHHHHH
Q 030367 88 MRAGPLYVSMFKPLAILFSTVMGVII 113 (178)
Q Consensus 88 ~~~~~~~~sl~~~l~Pv~a~i~g~l~ 113 (178)
...+.-+++++.|+.|+++.+++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888898888877755
No 85
>PRK02237 hypothetical protein; Provisional
Probab=86.35 E-value=1.3 Score=32.01 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+.-+--+.+.+.++.+=|++++...++|+++.+.|+.+..+.+|
T Consensus 65 YGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 65 YGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred hhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 33344456778999999999999999999999999998877654
No 86
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.08 E-value=1 Score=38.21 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 75 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 75 ~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+-+.+-.+++.++....++.--+.---.-+|..+++.-+|+.+++..||+|...+.+|+.++...
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44455566666666666665555555566899999999999999999999999999999987654
No 87
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=83.85 E-value=1.6 Score=31.53 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 99 KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 99 ~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.-+--+.+.+.++.+=|++++...++|+++.+.|+.+..+.+|
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3344467888999999999999999999999999999887664
No 88
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.37 E-value=10 Score=32.33 Aligned_cols=131 Identities=11% Similarity=0.140 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHHhc----cc-----ccc-chhcchhHHH-----HHH
Q 030367 6 QKMMAFIILEFFQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV----TE-----LSA-WKLRLDVGLF-----AIA 69 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~-~~l~~t~~~~l~g~i~~~~~a~~~~----~~-----~~~-~~~~~~~~~~-----~ll 69 (178)
.|-+.-|+..++-.|.++++. +|+....|+-++|.+.+.++...+. ++ +.. |.- ....|- -.+
T Consensus 183 iaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD-~~~~~~~~~e~p~l 261 (372)
T KOG3912|consen 183 IAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED-WGDAFAALQESPSL 261 (372)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh-HHHHHHHhcCCchh
Confidence 355666777777777777643 5899999999999665555444331 11 100 110 000111 134
Q ss_pred HHHHHHHHHHHHHHHHH----HhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 70 YSAVIGAAFLTTLLLWC----LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~----l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+.+..+..+.-.++|.+ -|..+++.=.+.-.+-..+-=+++.....|.++..|+.|.++.+.|+++.+
T Consensus 262 ~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 262 AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444433 466777777777777777777888888889999999999999999998866
No 89
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=79.70 E-value=6.6 Score=33.73 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHH---HHHHHHHHHHHHHHHHHhhcCcc
Q 030367 17 FQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAY---SAVIGAAFLTTLLLWCLMRAGPL 93 (178)
Q Consensus 17 ~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~lly---lgi~~T~la~~l~~~~l~~~~~~ 93 (178)
+++...+.++-|+-++..++.+=.+.....-...+...+.-.. ...|.--++ ---++|++=-.+-||++++++-+
T Consensus 34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~--~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlS 111 (349)
T KOG1443|consen 34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARV--VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLS 111 (349)
T ss_pred HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCcccc--CCcHHHHHHHhhhhhhhhhcccccccceeeeeeee
Confidence 4455555554477777777765443333222222221111010 012222111 12236667777889999999988
Q ss_pred eeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 94 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 94 ~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
.-++.-.-.++|-.++|.+|-=|+++|....=..+|-+|+++..++.
T Consensus 112 lYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 112 LYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred eeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 88888888999999999999999999999988888888888766543
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.89 E-value=2 Score=31.72 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 030367 124 VGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~~~~~~ 143 (178)
.|.+++++.++++.+|.+|+
T Consensus 75 aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45555555555555443333
No 91
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=77.02 E-value=2.3 Score=31.47 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.5
Q ss_pred cceeeechhhHHHHHHHHHHHHh
Q 030367 92 PLYVSMFKPLAILFSTVMGVIIF 114 (178)
Q Consensus 92 ~~~~sl~~~l~Pv~a~i~g~l~L 114 (178)
..+++++.|+.|+++.+++.++.
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999888887554
No 92
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=76.61 E-value=25 Score=30.58 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCcce-eeechhhHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 78 FLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFG-------DGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~-~sl~~~l~Pv~a~i~g~l~Lg-------E~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
++-..|-.++|++|-+. .++..-+.-+++.++--++.| .+-....++|.++.+.|+.++.+.-.
T Consensus 85 IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 85 IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 34455667788888773 445555566666666555544 23345789999999999999886543
No 93
>PRK13499 rhamnose-proton symporter; Provisional
Probab=76.39 E-value=51 Score=28.64 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCcceeee---ch-hhHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHHHHHHhc
Q 030367 78 FLTTLLLWCLMRAGPLYVSM---FK-PLAILFSTVMGVIIFGDGLF------LGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl---~~-~l~Pv~a~i~g~l~LgE~lt------~~~iiG~~lIl~Gv~l~~~~ 139 (178)
+++.+|.++-++.|...... +. -+.-+++.+.|. ++||.=+ ...++|.++++.|..++..+
T Consensus 272 ~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 272 LQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 55667777778887665544 33 455589999999 5999977 56799999999999887765
No 94
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=74.82 E-value=6.9 Score=28.43 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCcceeeechh-hHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 79 LTTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 79 a~~l~~~~l~~~~~~~~sl~~~-l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
+-.+|++-+++.+-+.+..+.+ +.-.|+.++|..+-.|.-.-..++|..++++|+.+.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4457788899999888777665 466678888885444444556899999999999875
No 95
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=74.06 E-value=3.9 Score=31.25 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=14.8
Q ss_pred ceeeechhhHHHHHHHHHHHHh
Q 030367 93 LYVSMFKPLAILFSTVMGVIIF 114 (178)
Q Consensus 93 ~~~sl~~~l~Pv~a~i~g~l~L 114 (178)
.+++++.|+.|+++++.|.++.
T Consensus 75 lkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888877775543
No 96
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=73.17 E-value=5.9 Score=30.77 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=8.3
Q ss_pred CCcccccCCCCCCccc
Q 030367 157 LSSEKVPLLQNSTEDT 172 (178)
Q Consensus 157 ~~~~~~~~~~~~~~~~ 172 (178)
+..|-+|+.+.++|||
T Consensus 137 ~~~Em~pL~~ddedeD 152 (163)
T PF06679_consen 137 ENVEMAPLEEDDEDED 152 (163)
T ss_pred ccceecccCCCccccc
Confidence 3345567755544444
No 97
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=72.91 E-value=11 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.598 Sum_probs=18.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 108 VMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 108 i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
++|.+.+++ -....++|..+++.|++....
T Consensus 76 f~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 76 FLGTLCLGQ-SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555 334466777777788766553
No 98
>PRK15049 L-asparagine permease; Provisional
Probab=71.48 E-value=77 Score=28.49 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=10.4
Q ss_pred cceeeechhhHHHHHHHHHHH
Q 030367 92 PLYVSMFKPLAILFSTVMGVI 112 (178)
Q Consensus 92 ~~~~sl~~~l~Pv~a~i~g~l 112 (178)
|-+... ....|+++.++..+
T Consensus 416 pf~~~~-~p~~~~~~l~~~~~ 435 (499)
T PRK15049 416 SFKLPG-APFTSWLTLLFLLS 435 (499)
T ss_pred CCcccC-ccHHHHHHHHHHHH
Confidence 344443 56666666654433
No 99
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=1.5 Score=37.06 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccchhcc--hhHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcceeee
Q 030367 27 ALIVMLCYQYFFSTILAAMFSLTVVTEL-----SAWKLRL--DVGL--FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM 97 (178)
Q Consensus 27 ~~l~~t~~~~l~g~i~~~~~a~~~~~~~-----~~~~~~~--~~~~--~~llylgi~~T~la~~l~~~~l~~~~~~~~sl 97 (178)
.|+-++..|+++...+...++-....-+ +..+... .... +.++|. +.-..-+.++++.|.+.-=+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi------~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFI------LMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheee------eehhccceehhhcceEEEEe
Confidence 4788999999887776666654432111 1111110 0111 233332 23446788999999998888
Q ss_pred chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
--.+..+|++++.+++|+++=+..-..++.+|+.|..+
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 88999999999999999999999999999999999765
No 100
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=66.78 E-value=2.5 Score=31.42 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030367 66 FAIAYSAVIGAAFLTTL 82 (178)
Q Consensus 66 ~~llylgi~~T~la~~l 82 (178)
..++-.|+..|+++|.+
T Consensus 57 ~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHHhhHhheeeEee
Confidence 45667799999999988
No 101
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=65.85 E-value=95 Score=27.49 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=27.6
Q ss_pred echhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 97 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 97 l~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
.+....|+++.++..++.--.-......|.++++.|+.+..+.+++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777765554442222235667888889997665554443
No 102
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=63.06 E-value=8.8 Score=22.58 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 103 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 103 Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
|+.+.+.|++++=-|=-..-++|.-+|+.|+.=
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999988877777888999999998763
No 103
>PRK03893 putative sialic acid transporter; Provisional
Probab=61.72 E-value=1.1e+02 Score=26.61 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=6.8
Q ss_pred ccCCCCCCccccc
Q 030367 162 VPLLQNSTEDTKC 174 (178)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (178)
.|..++.+++++|
T Consensus 482 ~~~~~~~~~~~~~ 494 (496)
T PRK03893 482 VPFGSAKNALVKT 494 (496)
T ss_pred cCcccccCccccC
Confidence 4445555555554
No 104
>PF15102 TMEM154: TMEM154 protein family
Probab=61.38 E-value=7.2 Score=29.70 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhcccccccc
Q 030367 124 VGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
++++|++..++++.+.|||+.|.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHheeEEeecccCC
Confidence 34455566666766665555443
No 105
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=60.44 E-value=57 Score=27.08 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCcc-eeeechhhHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 67 AIAYSAVIGAAFLTTLLLWCLMR-AGPL-YVSMFKPLAILFSTVMGVII-----FGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 67 ~llylgi~~T~la~~l~~~~l~~-~~~~-~~sl~~~l~Pv~a~i~g~l~-----LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
.-+|=+++.-++...+|. .-|+ ..+. ..+++..+-.+.=.+.-.+= +...+|..|+++..+++.|+.+..++
T Consensus 178 tqLYE~~~~l~~f~~l~~-~~~~~~~~G~~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 178 TFLYESLWNFLGFILLLW-LRKKPLRRGEVFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhccCCCchhHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 345655555222223332 2233 2333 33455555555544444331 11137889999999999998876544
Q ss_pred c
Q 030367 140 K 140 (178)
Q Consensus 140 ~ 140 (178)
+
T Consensus 257 ~ 257 (269)
T PRK12437 257 R 257 (269)
T ss_pred H
Confidence 3
No 106
>PRK10489 enterobactin exporter EntS; Provisional
Probab=57.86 E-value=1.2e+02 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 030367 122 SLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.+.|+...+.++.+....++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 44555555656555554333
No 107
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=57.57 E-value=9.5 Score=32.39 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHH-HHHHHHHHHHHHHHHHHHHHHHhhc-CcceeeechhhHHHHH
Q 030367 29 IVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGL-FAIAYSAVIGAAFLTTLLLWCLMRA-GPLYVSMFKPLAILFS 106 (178)
Q Consensus 29 l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~-~~llylgi~~T~la~~l~~~~l~~~-~~~~~sl~~~l~Pv~a 106 (178)
.-+|+-|+++-+...+++.--+..-.+..+... ... .++.| ..-...|++++.- +--.=-++-...++..
T Consensus 34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~-Y~i~V~mFF-------~vnv~NN~al~f~I~~PlHiIfRsgsll~n 105 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKD-YAITVAMFF-------IVNVTNNYALKFNIPMPLHIIFRSGSLLAN 105 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccccCCCCchhh-hheehheee-------eeeeeccceeeecccceEEEEEecCcHHHH
Confidence 457888888877666554311111111111110 011 11222 1233456666653 3334446677889999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 107 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 107 ~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
+++|++++|.+-+..|+...+++-+|+++....+.++-
T Consensus 106 M~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 106 MILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred HHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 99999999999999999999999999999887765543
No 108
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.72 E-value=23 Score=30.58 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCCcch------HHHHHHHHHHHHHHHHHhcc
Q 030367 80 TTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDGLFL------GSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~lt~------~~iiG~~lIl~Gv~l~~~~~ 140 (178)
...-|++++..+++.++...+. -..++++.|.+++.|--.. ..+.|...++.|+++....|
T Consensus 241 ~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 241 MNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence 3334788888888877666655 6778888899999987543 35678888999988875443
No 109
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=56.50 E-value=1.2e+02 Score=26.59 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=25.3
Q ss_pred chhhHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 98 FKPLAILFSTVMGVIIF-----GDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~L-----gE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
.....|+++.+.+.+++ .++.. ..+.|.++++.|+.+....++|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 389 AFGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhheech
Confidence 34567888877776663 44322 1235777777886655444433
No 110
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=55.73 E-value=4.6 Score=33.69 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHH----HHHHHHHHHHHHHHH
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVM 137 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~----iiG~~lIl~Gv~l~~ 137 (178)
++-..+..+.++.|-...=.++-+--+++.+-|+++|+|+=|..+ ++|.++++.|..+..
T Consensus 221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 567778888889998888888888889999999999999998865 578888888766544
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=54.45 E-value=19 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccccc
Q 030367 119 FLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 119 t~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
.+..++|.+++++|..+...-|..+
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 4568999999999988776554433
No 112
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=54.42 E-value=66 Score=26.88 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhccc
Q 030367 118 LFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 118 lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+|..|++...+++.|+.+..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999987765443
No 113
>PF15345 TMEM51: Transmembrane protein 51
Probab=52.34 E-value=15 Score=30.17 Aligned_cols=25 Identities=8% Similarity=0.327 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhcccccccccc
Q 030367 124 VGAVIIVIGFYVVMWGKAKEENTID 148 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~~~~~~~~~~~ 148 (178)
.|.+|.++.+.+..+.|+|+++.++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4778888888888888777766555
No 114
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=51.63 E-value=1.5e+02 Score=25.18 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 030367 102 AILFSTVMGV 111 (178)
Q Consensus 102 ~Pv~a~i~g~ 111 (178)
.|+...+++-
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 5666665554
No 115
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=50.78 E-value=21 Score=28.48 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=27.8
Q ss_pred ceeeechhhHHHHHHHHHHHHhcCCcc-hHHHHHHH-HHHHHHHHHH
Q 030367 93 LYVSMFKPLAILFSTVMGVIIFGDGLF-LGSLVGAV-IIVIGFYVVM 137 (178)
Q Consensus 93 ~~~sl~~~l~Pv~a~i~g~l~LgE~lt-~~~iiG~~-lIl~Gv~l~~ 137 (178)
...+++..+.|..+..+|..+-+--.. +.+++|++ +++.|+.+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 345556667788888888766543223 34666655 4667877654
No 116
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=48.82 E-value=1.5e+02 Score=24.24 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcC--h-HHHHHHHH---HHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFP--A-LIVMLCYQ---YFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 79 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~--~-~l~~t~~~---~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la 79 (178)
.++..-|+|-+.-|+....-. + ..-+.... ..+-....+++++ . ....|+......|..+.-.+.+.-++-
T Consensus 142 ~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~-T--~VE~~qsFA~~PWG~l~G~A~L~lAFN 218 (290)
T KOG4314|consen 142 GSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAF-T--GVEHLQSFAAAPWGCLCGAAGLSLAFN 218 (290)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHH-h--chHHHHHHhhCCchhhhhHHHHHHHHh
Confidence 456677888888887765431 1 11111111 1122222222222 1 111232111123555544444443333
Q ss_pred HHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 80 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+ +-+.++....|-..|+=+...-.--.....++-+-.++.....|..+|..|.++...+..
T Consensus 219 ~-~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 219 F-LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred h-heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 3 345677778888777766664444555677666667888899999999999888775543
No 117
>COG2149 Predicted membrane protein [Function unknown]
Probab=48.16 E-value=33 Score=25.22 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
|++..=|.+++...-.++.+..+... +...++.+|..+|+.|+.+...+
T Consensus 26 FLAWiRTsLallafGvai~~f~~~l~---------------------~~~~r~~lg~fii~~gil~~a~g 74 (120)
T COG2149 26 FLAWIRTSLALLAFGVAIDQFVPFLA---------------------TPVIRELLGVFLILVGILLAALG 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888766544 55567778888888887776543
No 118
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=48.01 E-value=1.5e+02 Score=25.60 Aligned_cols=123 Identities=10% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhh-c-------ChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030367 13 ILEFFQAITLKE-F-------PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLL 84 (178)
Q Consensus 13 ~y~i~~~~~~~~-~-------~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~ 84 (178)
.|-++|.|+..| | .++.-+...|-+.+.+......-...... . ....|.---+.++ ...+.-.+++
T Consensus 28 ~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~---~--~~apl~~y~~is~-tn~~s~~~~y 101 (327)
T KOG1581|consen 28 TWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKEL---S--GVAPLYKYSLISF-TNTLSSWCGY 101 (327)
T ss_pred HHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccC---C--CCCchhHHhHHHH-HhhcchHHHH
Confidence 345556665433 4 23555666676666666533322221111 1 1123444444444 3345667778
Q ss_pred HHHhhcCcce--eeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 85 WCLMRAGPLY--VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 85 ~~l~~~~~~~--~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
.++|+++=-. .+=..=+.|| ++.+.++.+.+.++...+=+.+|-.|+.+....++..
T Consensus 102 eaLKyvSyPtq~LaKscKmIPV--mlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 102 EALKYVSYPTQTLAKSCKMIPV--MLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHhccchHHHHHHHhhhhHH--HHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 8899865222 2222334555 6789999999999999999999999998887766544
No 119
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=46.24 E-value=1.8e+02 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 104 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 104 v~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+...+.|++.-+-..+...++++++.+.++.+..
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344455443222233334455555555555444
No 120
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=45.51 E-value=40 Score=18.33 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=7.6
Q ss_pred chHHHHHHHHHHHHH
Q 030367 119 FLGSLVGAVIIVIGF 133 (178)
Q Consensus 119 t~~~iiG~~lIl~Gv 133 (178)
.+..++|.+++..+.
T Consensus 11 ~~~~~~G~~l~~~~~ 25 (34)
T TIGR01167 11 SLLLLLGLLLLGLGG 25 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566664444433
No 121
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=44.23 E-value=2e+02 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCcchH--HHHHHHHHHHHHHHHHhccc
Q 030367 116 DGLFLG--SLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 116 E~lt~~--~iiG~~lIl~Gv~l~~~~~~ 141 (178)
|.+++. ..+++++.+.++.++.+.++
T Consensus 364 ~~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 364 EAYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555 46666666667666544333
No 122
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=44.20 E-value=97 Score=27.67 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHH---HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 030367 70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAIL---FSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv---~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 138 (178)
-.|.+....+..++-+..||+|+.+++++....-. ...+.+++..+++. ..+...+.+.|+.+...
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~---~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF---SSISAYLLLGGIALSRI 368 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHHHH
Confidence 44566667888899999999999999998877444 34444555555554 45555666667766553
No 123
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=43.80 E-value=1.1e+02 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.708 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhcccc
Q 030367 118 LFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 118 lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
++..|+++..+++.|+.+..+.+++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999877655433
No 124
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.84 E-value=1.2e+02 Score=21.30 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHhhcCcceeeechhhHHHHHHHHHHHH-------hcCC-cchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 84 LWCLMRAGPLYVSMFKPLAILFSTVMGVII-------FGDG-LFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 84 ~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~-------LgE~-lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
..++|+.+-.. ....|.++++.|.++ -++. +-...+.|+..=+++--+.+...||.+|.
T Consensus 22 Vq~IkkT~~v~----~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~ 88 (93)
T PF06946_consen 22 VQAIKKTKVVP----NKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKY 88 (93)
T ss_pred HHHHHHhccCC----cchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhc
Confidence 55777765222 223444444444432 2333 23335677766666555655555544444
No 125
>PRK11469 hypothetical protein; Provisional
Probab=41.27 E-value=22 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=27.8
Q ss_pred eechhhHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHH
Q 030367 96 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVM 137 (178)
Q Consensus 96 sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~l-Il~Gv~l~~ 137 (178)
+.+..+.|..+..+|-.+-+=...+.+++|..+ ++.|+.+..
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344477888888888866555444567777665 456777655
No 126
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=40.67 E-value=60 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.384 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhccccccc
Q 030367 118 LFLGSLVGAVIIVIGFYVVMWGKAKEEN 145 (178)
Q Consensus 118 lt~~~iiG~~lIl~Gv~l~~~~~~~~~~ 145 (178)
+++..+.|..+.++=++++.+.+||+.+
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSR 62 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4556666665555556666666665544
No 127
>COG2034 Predicted membrane protein [Function unknown]
Probab=40.42 E-value=46 Score=23.03 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccC
Q 030367 121 GSLVGAVIIVIGFYVVMWGKAKEENTIDDRG 151 (178)
Q Consensus 121 ~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~ 151 (178)
...+|..+++.|+.+..+.+.+++.++.|.+
T Consensus 14 li~iGf~LifLGi~l~~~~~~~~~~~~~E~g 44 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFAESGSSVEYG 44 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCccccc
Confidence 4678999999999998888777666444433
No 128
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=38.32 E-value=48 Score=22.46 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=23.4
Q ss_pred eechhhHHHHHHHHHHHHhcCCc-----------chHHHHHHHHHHHHHHHHH
Q 030367 96 SMFKPLAILFSTVMGVIIFGDGL-----------FLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 96 sl~~~l~Pv~a~i~g~l~LgE~l-----------t~~~iiG~~lIl~Gv~l~~ 137 (178)
+++..+.|...+..|+-++.|.+ -.+.+.|.++...|+....
T Consensus 6 AlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~ 58 (77)
T PF11118_consen 6 ALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIA 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554433221 2245678888888887654
No 129
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=29 Score=25.02 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 101 LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 101 l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+--+.+.+..++.=|-+++.+.++|.++-++|+.++...+|
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 33456777888888899999999999999999887776654
No 130
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=36.52 E-value=2.6e+02 Score=23.61 Aligned_cols=93 Identities=6% Similarity=-0.071 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030367 10 AFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMR 89 (178)
Q Consensus 10 ~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~la~~l~~~~l~~ 89 (178)
+--...-+.|.+....+ +.-.+.....+++++++.+.- +....+. ...|..++.-|+ +...-..+++.++++
T Consensus 23 siq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~R---Pwr~r~~---~~~~~~~~~yGv-sLg~MNl~FY~si~r 94 (292)
T COG5006 23 SIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALFR---PWRRRLS---KPQRLALLAYGV-SLGGMNLLFYLSIER 94 (292)
T ss_pred HHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHhh---HHHhccC---hhhhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 33334445555555554 677888888888887765432 1111121 134655544465 444556777889999
Q ss_pred cCcceeeechhhHHHHHHHHH
Q 030367 90 AGPLYVSMFKPLAILFSTVMG 110 (178)
Q Consensus 90 ~~~~~~sl~~~l~Pv~a~i~g 110 (178)
++-..+--+.+.-|+.-.+++
T Consensus 95 iPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 95 IPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred ccchhhhhhhhccHHHHHHHh
Confidence 999999999999998665543
No 131
>PF12832 MFS_1_like: MFS_1 like family
Probab=36.03 E-value=73 Score=21.07 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHH
Q 030367 67 AIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV 111 (178)
Q Consensus 67 ~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~ 111 (178)
-.+|-|..++...|.--..-..-.++.++++...+.|.+..+..-
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~p 53 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPP 53 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566665555555556666666666666666655444
No 132
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=35.95 E-value=1.6e+02 Score=23.03 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhc
Q 030367 64 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 139 (178)
Q Consensus 64 ~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 139 (178)
.|-.+=|...+++.++.....-++++.++......-.+ ...+..+..-.++-+....+|-+++-..+.++.|.
T Consensus 63 ~~~~L~~~~~~~s~~~~~vtl~~~a~~~~~~~~~l~~~---~~~~~ai~~~~~~~~~~~~~~Pi~~~~~i~~~~w~ 135 (186)
T PF12036_consen 63 DWHRLQNIDFIGSFLSIWVTLCAMARLDEPLKSVLHYF---GALVIAIFQQKDRWSLWNTIGPILIGLLILLVSWL 135 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---HHHHHHHHHhhCcccchhhHHHHHHHHHHHHHHHh
Confidence 35455678888899999999989998888776666555 44444555556777777777766666655555554
No 133
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.88 E-value=49 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=22.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 117 GLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 117 ~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
.+++..++|.+++++|+.+...++.+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 5788999999999999888776554443
No 134
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=34.72 E-value=3.2e+02 Score=24.08 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 100 PLAILFSTVMGVII-FGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 100 ~l~Pv~a~i~g~l~-LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
...+..+.++..+. ..-.. ....+|.++++.|+.+..+.++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGL-KYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444433 33332 3578888999999888766444
No 135
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=34.15 E-value=28 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccc
Q 030367 98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 141 (178)
+....+++.++.++.+.+++.+..++++.+++..|++...+.+.
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 44567889999999999999999999999999999887665543
No 136
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=33.90 E-value=2.1e+02 Score=21.74 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccc
Q 030367 80 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
-.+..+.+++.|.+|.++=+.. .+ ..+++.---.+++.++.|..++..=+.++..+...++
T Consensus 62 ~G~~~~lm~~kgi~rm~lG~~v---m~-~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~Q 122 (144)
T PF01350_consen 62 LGVFWFLMRRKGIGRMSLGMLV---MA-VAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQ 122 (144)
T ss_pred HHHHHhhhcCCCcchhhHHHHH---HH-HHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCc
Confidence 3444456788899998876554 22 2333333345788899999998887777766544333
No 137
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.43 E-value=33 Score=20.29 Aligned_cols=18 Identities=39% Similarity=0.973 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhccc
Q 030367 124 VGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~~~~ 141 (178)
+|.++++.++++..|.+|
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 345556666666655444
No 138
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=33.39 E-value=3.3e+02 Score=23.77 Aligned_cols=19 Identities=11% Similarity=-0.144 Sum_probs=13.7
Q ss_pred echhhHHHHHHHHHHHHhc
Q 030367 97 MFKPLAILFSTVMGVIIFG 115 (178)
Q Consensus 97 l~~~l~Pv~a~i~g~l~Lg 115 (178)
.+....|+.+++...+++-
T Consensus 385 p~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 385 PAYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4566788888888876653
No 139
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=33.01 E-value=96 Score=21.50 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
..|+..+.+|++..++...+-+|.-... +-| ..+-=.|...+|..++++|+++..
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~----------i~p----------i~~lG~WN~~IGfg~~~~Gf~mt~ 84 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQ----------IPP----------IPDLGNWNLAIGFGLMIVGFLMTM 84 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCC----------CCC----------cccccchHHHHHHHHHHHHHHHHc
Confidence 4588888888888888888777655443 001 111116789999999999988765
No 140
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=31.51 E-value=1.5e+02 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHhc
Q 030367 99 KPLAILFSTVMGVIIFG 115 (178)
Q Consensus 99 ~~l~Pv~a~i~g~l~Lg 115 (178)
..+.|+.+++.+.-+++
T Consensus 3 ll~iP~l~~l~~~p~~n 19 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYN 19 (66)
T ss_pred hHHHHHHHHHHhHHHhc
Confidence 44567777766644443
No 141
>PF15471 TMEM171: Transmembrane protein family 171
Probab=31.15 E-value=56 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q 030367 121 GSLVGAVIIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 121 ~~iiG~~lIl~Gv~l~~~~~~~~~ 144 (178)
.|++|-++++.|+......+-|||
T Consensus 162 lQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred hhhhhhHHHHHhhhhhheeeeeec
Confidence 789999999999887666554444
No 142
>PRK09579 multidrug efflux protein; Reviewed
Probab=29.49 E-value=1.8e+02 Score=28.86 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 104 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 104 v~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+++++++.++.|.+++....+| .++++|+.+-+
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G-~i~L~GivVnn 914 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVG-LVTLIGLISKH 914 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHH-HHHHHHHHHcC
Confidence 4678888889999999999988 56677877633
No 143
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=29.42 E-value=49 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=20.5
Q ss_pred eeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 030367 94 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 129 (178)
Q Consensus 94 ~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lI 129 (178)
..+++..+.|..+..+|..+-+-.-.+.+++|+++.
T Consensus 28 ~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 28 IIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777666533344466665543
No 144
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.94 E-value=1.7e+02 Score=21.00 Aligned_cols=20 Identities=5% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHH-HHHHHHHHHhccc
Q 030367 122 SLVGAVI-IVIGFYVVMWGKA 141 (178)
Q Consensus 122 ~iiG~~l-Il~Gv~l~~~~~~ 141 (178)
.++|.+| +.++.-+..|+..
T Consensus 5 ~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 3455555666543
No 145
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=27.87 E-value=2.6e+02 Score=20.88 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhcCcceeeechhhHH
Q 030367 65 LFAIAYSAVIGAAFLTTL-LLWCLMRAGPLYVSMFKPLAI 103 (178)
Q Consensus 65 ~~~llylgi~~T~la~~l-~~~~l~~~~~~~~sl~~~l~P 103 (178)
+..++..+++-|+++|.+ =.+-+.|.|=..+++--...-
T Consensus 30 f~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La 69 (136)
T PF10710_consen 30 FGDILLISLVLTVVAYLIGDLFILPRTGNIVATIADFGLA 69 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHH
Confidence 456677788888888843 455677777666666555433
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.77 E-value=50 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH-hcccccccc
Q 030367 122 SLVGAVIIVIGFYVVM-WGKAKEENT 146 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~-~~~~~~~~~ 146 (178)
.++|.+.-++|+++.. +.-+|.+|+
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555544444 344455554
No 147
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=27.64 E-value=3.6e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 030367 118 LFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 118 lt~~~iiG~~lIl~Gv~l~~ 137 (178)
.+...++.+++.+.+..+..
T Consensus 376 ~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 376 FRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544443
No 148
>PF13994 PgaD: PgaD-like protein
Probab=27.29 E-value=2.3e+02 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 030367 123 LVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 123 iiG~~lIl~Gv~l~~~~~ 140 (178)
.-..++++.|+.++.|.+
T Consensus 66 ~y~~i~~~~a~~Li~Wa~ 83 (138)
T PF13994_consen 66 IYLLIALVNAVILILWAK 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455556666666655
No 149
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.16 E-value=3.4e+02 Score=23.02 Aligned_cols=78 Identities=13% Similarity=0.246 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCcceee-echhhHHHHHHHHHHHHhcCCc--c------hHHHHHHHHHHHHHHH
Q 030367 67 AIAYSAVIGAAFLTTLLLWCLMR--AGPLYVS-MFKPLAILFSTVMGVIIFGDGL--F------LGSLVGAVIIVIGFYV 135 (178)
Q Consensus 67 ~llylgi~~T~la~~l~~~~l~~--~~~~~~s-l~~~l~Pv~a~i~g~l~LgE~l--t------~~~iiG~~lIl~Gv~l 135 (178)
+-+|=+++-.++-+.++.+..++ ..+..++ ++...--++=.+.=. +-.+.. . ..|++...+|++|+.+
T Consensus 191 sqLYE~~~~~iv~~iil~~~~~~~~~~~G~v~~~y~~~Yg~~Rf~iE~-~R~~~~~~~~~~~~~mgqilSi~mIl~Gi~~ 269 (287)
T COG0682 191 SQLYESFLEGIVFFIILFLFRRKPLLKSGFVFGLYLIGYGLFRFFIEF-FREPDLMLGGLIRILMGQILSIPMILLGLWL 269 (287)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhcccCCCeeeehhHHHHHHHHHHhhhh-hhcCchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 56777777777777777777764 2122222 222211111111111 111111 1 2689999999999988
Q ss_pred HHhccccccc
Q 030367 136 VMWGKAKEEN 145 (178)
Q Consensus 136 ~~~~~~~~~~ 145 (178)
..+.++|.++
T Consensus 270 ~~~~~~k~~~ 279 (287)
T COG0682 270 IIYLYKKAKK 279 (287)
T ss_pred HHHHHHhccC
Confidence 8776655433
No 150
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=92 Score=25.70 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=20.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHH----hccccccccccccCCCCCCC
Q 030367 115 GDGLFLGSLVGAVIIVIGFYVVM----WGKAKEENTIDDRGTWSSEL 157 (178)
Q Consensus 115 gE~lt~~~iiG~~lIl~Gv~l~~----~~~~~~~~~~~~~~~~~~~~ 157 (178)
||.+-+..++-++.++.+++.-+ ..|+.+++++.|.++.+.++
T Consensus 182 GETvFL~~lligl~llllv~~~q~L~~~sKk~~~~~kVE~GTas~~~ 228 (261)
T KOG1631|consen 182 GETVFLYILLIGLSLLLLVLSQQFLSKLSKKTKKRRKVEVGTASKDA 228 (261)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEeecccCccc
Confidence 44444444444444444444433 23444555566666544444
No 151
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=26.57 E-value=89 Score=26.95 Aligned_cols=131 Identities=10% Similarity=0.034 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhccc-----c--ccc-hhcchhHHHHHHH--HHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-----L--SAW-KLRLDVGLFAIAY--SAVIG 75 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a~~~~~~-----~--~~~-~~~~~~~~~~lly--lgi~~ 75 (178)
++.+||+-|-..+|-.-||.+. -..+.|-+.++-++...+..+.-+. + +.+ ....+..|-.+.+ .|=+.
T Consensus 3 itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 3 ITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 4678999999988877655321 1245555555555443333222110 0 111 1001123433333 22222
Q ss_pred HHHHHHHHHHHHhhcCcceeeechhh-HHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHh
Q 030367 76 AAFLTTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDGLF--LGSLVGAVIIVIGFYVVMW 138 (178)
Q Consensus 76 T~la~~l~~~~l~~~~~~~~sl~~~l-~Pv~a~i~g~l~LgE~lt--~~~iiG~~lIl~Gv~l~~~ 138 (178)
--++-.+-.+++...|-+.+-.+..- .=|.++++-+ ++..++. ...+.|.+++++++.+...
T Consensus 82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 23455566666666665544333221 2233455555 3455554 2466788888888887553
No 152
>PRK10655 potE putrescine transporter; Provisional
Probab=26.52 E-value=4.3e+02 Score=22.92 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 101 LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 101 l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+.|+.+.+...+.+-.........|.++++.|+.+.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~ 425 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYG 425 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5666666665544322222234667888888866653
No 153
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.37 E-value=2.2e+02 Score=28.31 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 104 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 104 v~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
+++++++.++.|.+++...++|.+ +++|+.+-+
T Consensus 903 l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 903 VIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 467889999999999999999988 788887633
No 154
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.14 E-value=61 Score=20.15 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 030367 122 SLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~~~~ 140 (178)
.++++++.++|+++..-+|
T Consensus 19 Li~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 19 LIFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHHCTTH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 4566777788887766444
No 155
>COG1971 Predicted membrane protein [Function unknown]
Probab=25.82 E-value=91 Score=24.83 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=29.7
Q ss_pred eechhhHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHH
Q 030367 96 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVM 137 (178)
Q Consensus 96 sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~l-Il~Gv~l~~ 137 (178)
+.+..+.|+++...|.++=+=.-.+.+|+|.++ ++.|+....
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888877655556778777665 667877654
No 156
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=25.51 E-value=5.4e+02 Score=23.78 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 030367 6 QKMMAFIILEFFQAITLKEFPALIVMLCYQYFFSTI 41 (178)
Q Consensus 6 ~aal~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i 41 (178)
+++++.-.|.+..|+ .++.|.+..+....+++|.+
T Consensus 17 ~~~~~~~~~~~~~~~-~~~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 17 LASLAKIGFHLTHKV-IRAVPESVLLIVYGLLVGGI 51 (559)
T ss_pred HHHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHH
Confidence 355566666665444 45677666666666666654
No 157
>PRK10054 putative transporter; Provisional
Probab=25.27 E-value=4.2e+02 Score=22.45 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 030367 99 KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFY 134 (178)
Q Consensus 99 ~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~ 134 (178)
.++-..++..++-++.+-..+...++.+++.+.++.
T Consensus 141 ~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 141 LNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 344455555555555432233334444444444433
No 158
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=25.01 E-value=2.4e+02 Score=22.85 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=28.5
Q ss_pred cceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 92 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 92 ~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
.+...+......++.++....++|-+++...+.|.+++ .|+.+
T Consensus 123 ~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~-iGi~V 165 (246)
T TIGR00966 123 FALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI-IGYSI 165 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHhc
Confidence 33444455555666777777788999998887766554 55544
No 159
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=24.82 E-value=4.9e+02 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccccccc
Q 030367 106 STVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 146 (178)
Q Consensus 106 a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 146 (178)
+.+-|.++-+-.....-+.|+++.+.++.+..+.++++++.
T Consensus 352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~~ 392 (394)
T COG2814 352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRRT 392 (394)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444444454455568899999999999888777666553
No 160
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=24.63 E-value=5.2e+02 Score=23.25 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 030367 28 LIVMLCYQYFFSTILA 43 (178)
Q Consensus 28 ~l~~t~~~~l~g~i~~ 43 (178)
|......|..++.+..
T Consensus 331 P~~a~~~~~~i~~l~~ 346 (507)
T TIGR00910 331 PVPLVIIQGIITSIAG 346 (507)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5555556655555443
No 161
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=24.47 E-value=64 Score=18.65 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHH
Q 030367 5 EQKMMAFIILEFF 17 (178)
Q Consensus 5 ~~aal~~A~y~i~ 17 (178)
-+.|.+|++|.+.
T Consensus 12 il~A~~Wa~fNIg 24 (36)
T CHL00196 12 VLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHhH
Confidence 4689999999994
No 162
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.07 E-value=4.3e+02 Score=22.08 Aligned_cols=130 Identities=15% Similarity=0.272 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhc----Ch---HHHHHHHHHHHHHHHHHHHHHHhccccccchhcchhHHHHHHHHHHHHHH
Q 030367 5 EQKMMAFIILEFFQAITLKEF----PA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 77 (178)
Q Consensus 5 ~~aal~~A~y~i~~~~~~~~~----~~---~l~~t~~~~l~g~i~~~~~a~~~~~~~~~~~~~~~~~~~~llylgi~~T~ 77 (178)
-.+.++|....++..-. .|| ++ ...+.+.|-+.+.+.+.++-..-- ..++.+-...|+.+-++-+ +
T Consensus 8 ~~~~lsYc~sSIlmTlt-NKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~---~~fR~t~aK~WfpiSfLLv---~ 80 (309)
T COG5070 8 LTASLSYCFSSILMTLT-NKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRL---VEFRLTKAKKWFPISFLLV---V 80 (309)
T ss_pred chHHHHHHHHHHHHHHh-hHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhH---hheehhhhhhhcCHHHHHH---H
Confidence 34566666666654432 222 11 355667777777766665544311 1122111123332211111 0
Q ss_pred HHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 78 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 78 la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
. ..--.+++++++...-.++-++.-+.-+..-.+++|.+++.......++++..-+...|+..+
T Consensus 81 M-Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 81 M-IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred H-HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 0 111245677777777777888888888888899999999999999999999888888887653
No 163
>MTH00058 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=23.71 E-value=1.4e+02 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=10.0
Q ss_pred HHHHhhcCcceeeechhhHHH
Q 030367 84 LWCLMRAGPLYVSMFKPLAIL 104 (178)
Q Consensus 84 ~~~l~~~~~~~~sl~~~l~Pv 104 (178)
.+.|+|.||.+++....++|+
T Consensus 30 a~~Q~R~GP~~vg~~GllQp~ 50 (293)
T MTH00058 30 GYIQLRKGPNKVGIVGLLQSF 50 (293)
T ss_pred HHHhCCcCcCccCCcchhHHH
Confidence 344555555554444444443
No 164
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=23.55 E-value=1.1e+02 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHH
Q 030367 107 TVMGVIIFGDGLFLGSLVGAVIIVIGF 133 (178)
Q Consensus 107 ~i~g~l~LgE~lt~~~iiG~~lIl~Gv 133 (178)
-.+|..++++-.-+..++|..|.++=+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmI 159 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMV 159 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888999988865433
No 165
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.05 E-value=1.2e+02 Score=19.86 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 030367 123 LVGAVIIVIG 132 (178)
Q Consensus 123 iiG~~lIl~G 132 (178)
++|..+++..
T Consensus 9 i~Gm~iVF~~ 18 (79)
T PF04277_consen 9 IIGMGIVFLV 18 (79)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 166
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=23.00 E-value=1.9e+02 Score=21.57 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcceeeechhh
Q 030367 70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 101 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l 101 (178)
|.|.+.+..+..+...++|+..|.....+.++
T Consensus 52 w~~~f~~l~~~~~~~~~~k~K~~~~l~PlvPL 83 (131)
T PF10166_consen 52 WFASFYALAAVGLIAGAIKRKNPLFLIPLVPL 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhhHHHH
Confidence 34666666677777778888866544444433
No 167
>PRK11021 putative transporter; Provisional
Probab=22.30 E-value=5e+02 Score=22.26 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 030367 100 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 136 (178)
Q Consensus 100 ~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~ 136 (178)
...|+++.+...+++-. ..+..+...++...|.++.
T Consensus 365 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 400 (410)
T PRK11021 365 RPLAVLGCLLCLLLLVM-LGWKMLYALIMLALLWLFL 400 (410)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 46788888888766552 2344455555555554444
No 168
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=22.29 E-value=4.2e+02 Score=21.32 Aligned_cols=7 Identities=0% Similarity=-0.287 Sum_probs=3.0
Q ss_pred cCCcchH
Q 030367 115 GDGLFLG 121 (178)
Q Consensus 115 gE~lt~~ 121 (178)
.+..+++
T Consensus 144 ~~~~~~~ 150 (379)
T TIGR00881 144 AELYSWH 150 (379)
T ss_pred HhcCCch
Confidence 3444443
No 169
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=22.20 E-value=2e+02 Score=19.94 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
..|+..+.+|++..++.+.+-+|.... -.|. ..+-=.|...+|..++++|+.+..
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl~~~-----------~~P~---------m~~lG~WN~~IGFg~~i~G~lmt~ 84 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYLAGP-----------AIPW---------MADLGPWNYAIGFALMITGLLMTM 84 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccC-----------CCCC---------CcccCchhHHHHHHHHHHHHHHhc
Confidence 458888888999988888887776331 1111 111113788999999999998765
No 170
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.21 E-value=7.4e+02 Score=23.79 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 030367 9 MAFIILEFFQAITLKEFPALIVMLCYQYFFSTILAAMFS 47 (178)
Q Consensus 9 l~~A~y~i~~~~~~~~~~~~l~~t~~~~l~g~i~~~~~a 47 (178)
+..-+..++...+..|++ .-.+....++.+++..+++.
T Consensus 606 l~~i~G~il~g~L~Dr~G-Rr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 606 LAVLPGNIVSALLMDKIG-RLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666664 23333444445555444443
No 171
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=20.90 E-value=1.8e+02 Score=25.02 Aligned_cols=39 Identities=5% Similarity=0.131 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhc--------C--CcchHHHHHHHHHHHHHHHHHhcccc
Q 030367 104 LFSTVMGVIIFG--------D--GLFLGSLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 104 v~a~i~g~l~Lg--------E--~lt~~~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
+.+.++|.++++ . +-.+..++++++++..+.+-.+.+++
T Consensus 262 ~~G~viGalll~~l~~~l~~~~~~~~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 262 IIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 445556665554 1 12356788888887777765544443
No 172
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=20.63 E-value=3e+02 Score=19.07 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 030367 63 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 137 (178)
Q Consensus 63 ~~~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 137 (178)
..|+.-+.+|++..++.+.+-+|.-. . -.| +..+ | .|...+|..++++|+.+..
T Consensus 31 P~W~~~~m~~lm~~Gl~WlvvyYl~~---~--------~~P-~~~l------G---~WN~~IGfg~~~~G~~mt~ 84 (87)
T PRK02251 31 PRWFVPLFVALMIIGLIWLVVYYLSN---G--------SLP-IPAL------G---AWNLVIGFGLIMAGFGMTT 84 (87)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhC---C--------CcC-cccc------c---chhHHHHHHHHHHHHHHHc
Confidence 45888888899888888888777632 1 112 1111 1 3789999999999988765
No 173
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.51 E-value=88 Score=19.01 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.5
Q ss_pred HHHHHH
Q 030367 132 GFYVVM 137 (178)
Q Consensus 132 Gv~l~~ 137 (178)
|+.+.+
T Consensus 22 Gl~IyQ 27 (49)
T PF11044_consen 22 GLSIYQ 27 (49)
T ss_pred HHHHHH
Confidence 444443
No 174
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.42 E-value=2.2e+02 Score=20.19 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 103 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 103 Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
|++.-++.=.+|+|.+.-.-..=..++++|+.+
T Consensus 55 pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 55 PTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 333333333355555543223333344444444
No 175
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=20.29 E-value=3.4e+02 Score=22.70 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=32.1
Q ss_pred cCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 030367 90 AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 135 (178)
Q Consensus 90 ~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l 135 (178)
.......+....-.+..++....++|-+++...+.|...+ .|+.+
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~l-iG~sV 194 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTI-IGYSL 194 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHhe
Confidence 3345556666666777788888899999998887765554 66654
No 176
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=20.29 E-value=1.8e+02 Score=25.58 Aligned_cols=43 Identities=14% Similarity=-0.054 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeechhhHHHHHH
Q 030367 65 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFST 107 (178)
Q Consensus 65 ~~~llylgi~~T~la~~l~~~~l~~~~~~~~sl~~~l~Pv~a~ 107 (178)
...+++.|+++...+.....+=+.-+.+-.++.++.++|++++
T Consensus 272 ~~W~l~ng~laalg~~lA~~hplsil~a~~~ApltslnP~i~~ 314 (380)
T TIGR00261 272 KLWILSNGILSAIGSILARGHPLTILTAFLGAPITSLIPLIAT 314 (380)
T ss_pred HHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHhhHhhcCchHHH
Confidence 3457788888877777777666666777777888888887654
Done!