Query 030367
Match_columns 178
No_of_seqs 180 out of 1031
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.4 7.1E-13 2.4E-17 98.9 6.7 71 70-140 34-105 (137)
2 3b5d_A Multidrug transporter E 99.1 3.4E-10 1.2E-14 81.2 8.1 71 70-140 34-105 (110)
3 3l1l_A Arginine/agmatine antip 73.8 18 0.00062 29.8 9.0 46 98-143 386-431 (445)
4 2zxe_G FXYD10, phospholemman-l 57.0 8.4 0.00029 24.9 2.7 21 122-142 24-44 (74)
5 2jo1_A Phospholemman; FXYD1, N 54.7 11 0.00039 24.1 3.0 19 122-140 21-39 (72)
6 4dx5_A Acriflavine resistance 39.9 86 0.0029 29.6 7.9 51 80-130 885-935 (1057)
7 4aps_A DI-OR tripeptide H+ sym 39.5 1.5E+02 0.0052 24.0 13.7 17 10-26 66-83 (491)
8 4aps_A DI-OR tripeptide H+ sym 37.5 1.6E+02 0.0056 23.8 11.6 18 80-97 405-422 (491)
9 2l8s_A Integrin alpha-1; trans 30.6 61 0.0021 19.6 3.5 15 124-138 17-31 (54)
10 1pw4_A Glycerol-3-phosphate tr 28.6 2.2E+02 0.0075 22.5 12.5 28 68-95 353-380 (451)
11 2knc_A Integrin alpha-IIB; tra 28.1 80 0.0028 19.0 3.7 15 124-138 20-34 (54)
12 2jp3_A FXYD domain-containing 26.8 43 0.0015 21.2 2.3 20 122-141 22-41 (67)
13 4g5s_E PINS homolog, G-protein 23.7 26 0.00088 17.7 0.7 8 169-176 16-23 (26)
14 3ne5_A Cation efflux system pr 23.1 98 0.0033 29.1 5.1 36 95-130 906-941 (1054)
15 2rdd_B UPF0092 membrane protei 21.6 35 0.0012 18.7 1.1 17 128-144 11-27 (37)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.37 E-value=7.1e-13 Score=98.91 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
.+++++++++|.+|++++|+.+++++..+ ..+.|++++++|++++||++++.+++|.++|++|+++.++.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 36888999999999999999999999888 899999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.09 E-value=3.4e-10 Score=81.17 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcceeeec-hhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhcc
Q 030367 70 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 70 ylgi~~T~la~~l~~~~l~~~~~~~~sl~-~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 140 (178)
..++++.+++|.+|.+++|+.+.+.+..+ ..+.|++++++|++++||++++.+++|.++|+.|+++.+..+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 36778889999999999999999999777 899999999999999999999999999999999999987653
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=73.84 E-value=18 Score=29.83 Aligned_cols=46 Identities=2% Similarity=-0.187 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhccccc
Q 030367 98 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 143 (178)
Q Consensus 98 ~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~~~ 143 (178)
.....|+++.++..+.+-..-......|.++++.|+.+..+.++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556677776666555432222345668888888877666544433
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=56.98 E-value=8.4 Score=24.93 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 030367 122 SLVGAVIIVIGFYVVMWGKAK 142 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~~~~~~ 142 (178)
.++++++.++|+++...+|-|
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 567778888888888766543
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=54.67 E-value=11 Score=24.13 Aligned_cols=19 Identities=11% Similarity=0.560 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 030367 122 SLVGAVIIVIGFYVVMWGK 140 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~~~~ 140 (178)
.++++++.++|+++...+|
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 4566777778877766554
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=39.85 E-value=86 Score=29.55 Aligned_cols=51 Identities=10% Similarity=-0.086 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCcceeeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 030367 80 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 130 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl 130 (178)
|.+.....+........++.....+.+++.+..++|.+++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444444444444444455555556677788888899999999999876653
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=39.46 E-value=1.5e+02 Score=24.03 Aligned_cols=17 Identities=0% Similarity=-0.056 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh-cC
Q 030367 10 AFIILEFFQAITLKE-FP 26 (178)
Q Consensus 10 ~~A~y~i~~~~~~~~-~~ 26 (178)
...+...+..++.+| +.
T Consensus 66 ~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 66 MVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 334444455566666 44
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=37.54 E-value=1.6e+02 Score=23.83 Aligned_cols=18 Identities=17% Similarity=-0.132 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcCcceeee
Q 030367 80 TTLLLWCLMRAGPLYVSM 97 (178)
Q Consensus 80 ~~l~~~~l~~~~~~~~sl 97 (178)
-..+.+..+..++...+.
T Consensus 405 ~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp THHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 345666677666664433
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.64 E-value=61 Score=19.57 Aligned_cols=15 Identities=7% Similarity=0.636 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 030367 124 VGAVIIVIGFYVVMW 138 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~ 138 (178)
+|+.+++.-+.+..|
T Consensus 17 l~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 17 FAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455444444444
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.63 E-value=2.2e+02 Score=22.54 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccee
Q 030367 68 IAYSAVIGAAFLTTLLLWCLMRAGPLYV 95 (178)
Q Consensus 68 llylgi~~T~la~~l~~~~l~~~~~~~~ 95 (178)
++..|+......-..+....+..++...
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhh
Confidence 3334443333333445667777776533
No 11
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.07 E-value=80 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHh
Q 030367 124 VGAVIIVIGFYVVMW 138 (178)
Q Consensus 124 iG~~lIl~Gv~l~~~ 138 (178)
+|+.+++.-+.+..|
T Consensus 20 l~GLllL~li~~~Lw 34 (54)
T 2knc_A 20 LGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555554444444
No 12
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=26.80 E-value=43 Score=21.17 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 030367 122 SLVGAVIIVIGFYVVMWGKA 141 (178)
Q Consensus 122 ~iiG~~lIl~Gv~l~~~~~~ 141 (178)
.++++++.++|+++...+|-
T Consensus 22 LifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHH
T ss_pred hhhHHHHHHHHHHHHHcCcc
Confidence 56677788888888776553
No 13
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=23.74 E-value=26 Score=17.65 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=5.0
Q ss_pred CcccccCC
Q 030367 169 TEDTKCCP 176 (178)
Q Consensus 169 ~~~~~~~~ 176 (178)
.|||+|-|
T Consensus 16 lddqrcap 23 (26)
T 4g5s_E 16 LDDQRCAP 23 (26)
T ss_dssp CSSSCBCC
T ss_pred cccccCCC
Confidence 36677765
No 14
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=23.08 E-value=98 Score=29.14 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=26.8
Q ss_pred eeechhhHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 030367 95 VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 130 (178)
Q Consensus 95 ~sl~~~l~Pv~a~i~g~l~LgE~lt~~~iiG~~lIl 130 (178)
..++.....+++++.+..++|.+++...++|.++++
T Consensus 906 ~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~ 941 (1054)
T 3ne5_A 906 LIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALA 941 (1054)
T ss_dssp HHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 344445555677888888899999999999876654
No 15
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.58 E-value=35 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcccccc
Q 030367 128 IIVIGFYVVMWGKAKEE 144 (178)
Q Consensus 128 lIl~Gv~l~~~~~~~~~ 144 (178)
++++..|....++.+++
T Consensus 11 ~~~~ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 33333444444444433
Done!