Query 030369
Match_columns 178
No_of_seqs 97 out of 111
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 12:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4646 Uncharacterized conser 100.0 6.2E-70 1.3E-74 434.5 12.2 171 6-178 1-173 (173)
2 cd00020 ARM Armadillo/beta-cat 99.4 2.9E-12 6.2E-17 92.4 12.1 110 22-132 8-119 (120)
3 PF04826 Arm_2: Armadillo-like 99.2 3E-10 6.6E-15 97.7 12.3 128 21-150 12-144 (254)
4 cd00020 ARM Armadillo/beta-cat 99.1 4.1E-10 8.9E-15 81.1 9.3 110 59-174 3-119 (120)
5 PLN03200 cellulose synthase-in 99.0 6.1E-09 1.3E-13 109.5 13.8 130 23-152 15-156 (2102)
6 PLN03200 cellulose synthase-in 99.0 5E-09 1.1E-13 110.1 12.1 119 33-151 415-541 (2102)
7 PF05804 KAP: Kinesin-associat 98.9 3.9E-09 8.5E-14 102.1 9.4 105 46-150 273-382 (708)
8 PF05804 KAP: Kinesin-associat 98.9 2.1E-08 4.5E-13 97.2 12.2 131 21-154 290-425 (708)
9 KOG4224 Armadillo repeat prote 98.9 1.3E-08 2.9E-13 93.0 9.6 131 23-154 253-390 (550)
10 KOG1206 Peroxisomal multifunct 98.5 6.6E-08 1.4E-12 83.4 2.4 76 15-101 6-81 (272)
11 PF00514 Arm: Armadillo/beta-c 98.4 4.6E-07 1E-11 56.7 3.8 40 93-132 1-40 (41)
12 KOG4224 Armadillo repeat prote 98.3 5.8E-06 1.3E-10 76.0 11.5 124 26-150 213-343 (550)
13 KOG0166 Karyopherin (importin) 98.3 1.3E-05 2.7E-10 75.6 12.6 112 23-134 111-225 (514)
14 PF04826 Arm_2: Armadillo-like 98.2 1.5E-05 3.3E-10 68.7 10.8 111 27-141 59-172 (254)
15 KOG1048 Neural adherens juncti 98.1 1.5E-05 3.3E-10 77.4 10.0 145 19-173 520-682 (717)
16 smart00185 ARM Armadillo/beta- 98.1 6.2E-06 1.3E-10 50.1 4.7 40 93-132 1-40 (41)
17 PF00514 Arm: Armadillo/beta-c 98.1 3.8E-06 8.2E-11 52.5 3.6 41 52-92 1-41 (41)
18 PF09759 Atx10homo_assoc: Spin 97.9 3.2E-05 6.9E-10 58.8 6.1 64 39-102 3-70 (102)
19 COG5064 SRP1 Karyopherin (impo 97.8 0.00023 5E-09 65.3 10.2 122 22-150 162-295 (526)
20 KOG2160 Armadillo/beta-catenin 97.7 0.00042 9E-09 62.6 11.1 139 33-175 94-240 (342)
21 KOG0166 Karyopherin (importin) 97.7 0.00045 9.8E-09 65.3 11.3 152 23-176 323-487 (514)
22 smart00185 ARM Armadillo/beta- 97.7 7.7E-05 1.7E-09 45.2 4.2 40 52-91 1-40 (41)
23 KOG4500 Rho/Rac GTPase guanine 97.3 0.0012 2.7E-08 62.0 9.2 136 21-157 315-458 (604)
24 PF03224 V-ATPase_H_N: V-ATPas 97.3 0.0015 3.3E-08 56.9 9.2 138 32-175 115-269 (312)
25 KOG1293 Proteins containing ar 97.3 0.00061 1.3E-08 65.8 7.2 74 59-132 415-489 (678)
26 PF03224 V-ATPase_H_N: V-ATPas 97.2 0.0017 3.8E-08 56.5 8.8 132 21-152 146-294 (312)
27 COG5064 SRP1 Karyopherin (impo 97.1 0.0012 2.6E-08 60.7 6.3 95 39-133 132-230 (526)
28 PF10508 Proteasom_PSMB: Prote 97.1 0.013 2.7E-07 54.8 13.2 144 7-154 8-170 (503)
29 PF10508 Proteasom_PSMB: Prote 97.0 0.008 1.7E-07 56.1 11.2 121 20-141 76-199 (503)
30 KOG4199 Uncharacterized conser 96.9 0.012 2.6E-07 54.1 11.1 123 37-159 257-391 (461)
31 KOG1048 Neural adherens juncti 96.9 0.0033 7.1E-08 61.5 7.5 83 52-134 264-350 (717)
32 PF13646 HEAT_2: HEAT repeats; 96.8 0.0091 2E-07 41.3 7.6 86 23-128 1-87 (88)
33 KOG4646 Uncharacterized conser 96.7 0.0025 5.3E-08 52.0 4.8 103 67-175 20-128 (173)
34 PRK09687 putative lyase; Provi 96.3 0.018 3.9E-07 50.1 7.6 31 20-50 89-119 (280)
35 KOG4199 Uncharacterized conser 96.3 0.11 2.3E-06 48.0 12.6 145 26-173 288-442 (461)
36 PF05536 Neurochondrin: Neuroc 96.2 0.027 5.8E-07 53.5 9.0 100 34-134 69-169 (543)
37 PF13646 HEAT_2: HEAT repeats; 96.2 0.02 4.2E-07 39.6 6.2 58 65-132 1-59 (88)
38 PF12717 Cnd1: non-SMC mitotic 96.2 0.041 8.8E-07 44.3 8.7 92 76-176 1-93 (178)
39 PF08045 CDC14: Cell division 96.1 0.024 5.1E-07 49.5 7.2 84 51-134 121-208 (257)
40 KOG2122 Beta-catenin-binding p 95.9 0.0069 1.5E-07 63.5 3.6 79 56-134 523-602 (2195)
41 PF01602 Adaptin_N: Adaptin N 95.7 0.19 4.1E-06 45.5 11.8 123 15-149 19-161 (526)
42 PRK09687 putative lyase; Provi 95.2 0.13 2.8E-06 44.8 8.6 91 23-132 130-220 (280)
43 cd00256 VATPase_H VATPase_H, r 94.9 0.34 7.3E-06 45.2 10.8 116 19-134 141-259 (429)
44 PF01602 Adaptin_N: Adaptin N 94.7 0.42 9.1E-06 43.2 10.8 92 33-134 90-183 (526)
45 KOG1222 Kinesin associated pro 94.5 0.24 5.2E-06 47.7 9.1 133 22-157 346-496 (791)
46 KOG2122 Beta-catenin-binding p 94.5 0.21 4.5E-06 53.0 9.1 115 39-153 368-493 (2195)
47 cd00256 VATPase_H VATPase_H, r 94.4 1.5 3.3E-05 40.9 13.9 147 20-171 52-254 (429)
48 PF13513 HEAT_EZ: HEAT-like re 94.0 0.15 3.3E-06 32.9 4.8 54 37-90 2-55 (55)
49 PF12348 CLASP_N: CLASP N term 93.8 0.28 6.2E-06 39.9 7.2 140 25-174 7-159 (228)
50 PF11841 DUF3361: Domain of un 93.5 0.38 8.2E-06 39.4 7.4 82 95-176 2-90 (160)
51 PF07814 WAPL: Wings apart-lik 93.2 0.44 9.5E-06 42.8 8.0 72 63-134 21-94 (361)
52 PF11698 V-ATPase_H_C: V-ATPas 92.7 0.17 3.8E-06 39.5 4.1 80 43-132 31-114 (119)
53 PF12717 Cnd1: non-SMC mitotic 92.6 0.71 1.5E-05 37.1 7.6 84 65-152 27-113 (178)
54 PF11701 UNC45-central: Myosin 92.3 0.5 1.1E-05 37.7 6.4 85 43-129 67-155 (157)
55 PF12719 Cnd3: Nuclear condens 91.3 8.1 0.00018 33.4 13.3 150 20-177 25-187 (298)
56 KOG2160 Armadillo/beta-catenin 91.2 2.2 4.8E-05 38.9 10.0 119 23-142 126-250 (342)
57 PF13513 HEAT_EZ: HEAT-like re 91.0 0.63 1.4E-05 30.0 4.7 53 78-130 2-54 (55)
58 PF09759 Atx10homo_assoc: Spin 91.0 0.5 1.1E-05 35.9 4.8 51 84-134 7-60 (102)
59 PF05918 API5: Apoptosis inhib 90.8 0.57 1.2E-05 45.1 6.1 102 16-130 19-125 (556)
60 PF12755 Vac14_Fab1_bd: Vacuol 90.4 0.62 1.3E-05 34.7 4.8 67 63-132 27-95 (97)
61 PF12755 Vac14_Fab1_bd: Vacuol 89.9 0.6 1.3E-05 34.8 4.3 61 106-169 29-91 (97)
62 PF06371 Drf_GBD: Diaphanous G 89.8 3 6.4E-05 32.8 8.6 104 25-132 70-186 (187)
63 KOG1222 Kinesin associated pro 89.1 2.4 5.1E-05 41.2 8.6 112 39-150 276-396 (791)
64 PF02985 HEAT: HEAT repeat; I 88.5 0.52 1.1E-05 27.6 2.6 28 64-91 1-28 (31)
65 COG5369 Uncharacterized conser 88.3 0.33 7.1E-06 47.1 2.4 122 56-177 424-578 (743)
66 PF12348 CLASP_N: CLASP N term 88.1 7.2 0.00016 31.6 9.9 105 63-173 94-204 (228)
67 KOG4500 Rho/Rac GTPase guanine 87.7 2 4.3E-05 41.1 7.1 82 32-113 97-187 (604)
68 PF10274 ParcG: Parkin co-regu 87.0 2.1 4.6E-05 35.7 6.2 72 63-134 38-110 (183)
69 PF14663 RasGEF_N_2: Rapamycin 86.1 1.6 3.5E-05 33.3 4.7 102 64-176 9-111 (115)
70 PTZ00429 beta-adaptin; Provisi 86.0 1.9 4.2E-05 42.8 6.4 63 69-134 146-209 (746)
71 PF06025 DUF913: Domain of Unk 85.9 1.5 3.2E-05 40.0 5.2 71 46-116 133-208 (379)
72 KOG2023 Nuclear transport rece 84.4 4.7 0.0001 40.3 8.0 155 18-175 125-285 (885)
73 PF14664 RICTOR_N: Rapamycin-i 84.3 3.5 7.7E-05 37.5 6.8 103 33-142 79-186 (371)
74 COG5096 Vesicle coat complex, 83.8 2.2 4.9E-05 42.5 5.7 116 15-134 49-196 (757)
75 PF02985 HEAT: HEAT repeat; I 83.4 1.9 4E-05 25.2 3.1 27 106-132 2-28 (31)
76 PF12460 MMS19_C: RNAPII trans 82.0 3.4 7.3E-05 37.5 5.8 112 21-135 271-396 (415)
77 PF04063 DUF383: Domain of unk 82.0 9 0.00019 31.9 7.9 97 16-112 47-152 (192)
78 PF08045 CDC14: Cell division 81.0 8.8 0.00019 33.7 7.7 120 48-177 74-209 (257)
79 COG5096 Vesicle coat complex, 80.7 20 0.00042 36.1 10.9 65 62-132 91-155 (757)
80 PF14663 RasGEF_N_2: Rapamycin 79.1 2.2 4.8E-05 32.4 3.1 31 105-135 9-39 (115)
81 PF05536 Neurochondrin: Neuroc 79.0 39 0.00085 32.3 12.0 83 67-151 53-151 (543)
82 PF10165 Ric8: Guanine nucleot 78.9 6.8 0.00015 36.3 6.8 85 49-134 8-108 (446)
83 KOG0168 Putative ubiquitin fus 78.6 4.4 9.6E-05 41.3 5.7 91 64-154 212-308 (1051)
84 PTZ00429 beta-adaptin; Provisi 78.2 77 0.0017 31.8 14.2 103 63-174 105-207 (746)
85 PRK13800 putative oxidoreducta 78.2 45 0.00098 33.6 12.7 26 106-131 840-865 (897)
86 KOG2137 Protein kinase [Signal 78.0 10 0.00022 37.7 7.8 82 63-149 389-476 (700)
87 PRK13800 putative oxidoreducta 78.0 49 0.0011 33.3 12.9 26 106-131 777-802 (897)
88 PF11707 Npa1: Ribosome 60S bi 76.0 22 0.00047 31.5 8.9 96 79-176 134-238 (330)
89 KOG2973 Uncharacterized conser 75.8 22 0.00047 32.6 8.8 138 27-170 8-157 (353)
90 PF12719 Cnd3: Nuclear condens 75.3 28 0.00062 30.0 9.3 100 69-175 33-148 (298)
91 PF08216 CTNNBL: Catenin-beta- 74.9 2.8 6E-05 32.4 2.6 80 21-124 26-107 (108)
92 PF00790 VHS: VHS domain; Int 74.7 16 0.00034 28.3 6.8 84 84-172 26-115 (140)
93 KOG0168 Putative ubiquitin fus 74.1 12 0.00027 38.3 7.4 106 25-134 258-365 (1051)
94 KOG2259 Uncharacterized conser 72.1 31 0.00067 34.6 9.4 137 22-175 378-530 (823)
95 KOG1061 Vesicle coat complex A 72.0 14 0.00029 37.0 7.1 68 65-134 123-190 (734)
96 PF12460 MMS19_C: RNAPII trans 71.4 18 0.00038 32.9 7.3 84 23-112 325-410 (415)
97 PF12397 U3snoRNP10: U3 small 71.1 32 0.0007 25.6 7.6 98 64-172 7-119 (121)
98 KOG2759 Vacuolar H+-ATPase V1 70.5 5 0.00011 37.7 3.6 76 52-133 361-438 (442)
99 KOG0946 ER-Golgi vesicle-tethe 69.3 68 0.0015 32.9 11.2 111 19-132 20-150 (970)
100 PF13001 Ecm29: Proteasome sta 68.2 13 0.00028 34.9 5.9 67 105-173 24-91 (501)
101 KOG2171 Karyopherin (importin) 67.2 79 0.0017 33.2 11.5 108 42-157 103-219 (1075)
102 smart00288 VHS Domain present 65.0 35 0.00075 26.3 6.9 68 105-172 38-108 (133)
103 PF12530 DUF3730: Protein of u 64.0 87 0.0019 26.3 10.3 128 20-157 73-216 (234)
104 KOG1788 Uncharacterized conser 62.8 16 0.00035 39.0 5.7 74 13-86 458-539 (2799)
105 COG5231 VMA13 Vacuolar H+-ATPa 62.7 8.1 0.00018 35.7 3.3 76 53-134 352-429 (432)
106 PF01365 RYDR_ITPR: RIH domain 61.9 8.9 0.00019 31.3 3.2 61 51-113 31-110 (207)
107 cd04750 Commd2 COMM_Domain con 61.3 9.4 0.0002 30.9 3.2 53 117-172 29-81 (166)
108 KOG2171 Karyopherin (importin) 60.6 37 0.00081 35.5 7.8 131 19-156 349-487 (1075)
109 KOG2611 Neurochondrin/leucine- 59.7 1.4E+02 0.003 29.4 11.0 78 39-116 80-164 (698)
110 PF06371 Drf_GBD: Diaphanous G 59.5 23 0.00049 27.8 5.0 75 97-173 100-185 (187)
111 KOG1077 Vesicle coat complex A 58.0 57 0.0012 33.2 8.3 78 70-150 336-414 (938)
112 KOG2676 Uncharacterized conser 57.8 7.3 0.00016 36.5 2.1 59 42-100 376-438 (478)
113 KOG2759 Vacuolar H+-ATPase V1 57.4 70 0.0015 30.3 8.4 97 25-121 202-309 (442)
114 PF05004 IFRD: Interferon-rela 56.7 62 0.0014 28.6 7.8 123 35-164 144-291 (309)
115 cd03561 VHS VHS domain family; 56.2 65 0.0014 24.7 7.0 68 106-173 39-110 (133)
116 PF08389 Xpo1: Exportin 1-like 55.6 67 0.0014 23.6 6.8 63 63-128 82-148 (148)
117 KOG4413 26S proteasome regulat 55.1 96 0.0021 29.2 8.9 120 7-134 339-478 (524)
118 PF11701 UNC45-central: Myosin 54.7 79 0.0017 25.0 7.4 130 33-170 16-154 (157)
119 TIGR02270 conserved hypothetic 53.9 95 0.0021 28.8 8.8 80 33-133 128-207 (410)
120 KOG2999 Regulator of Rac1, req 53.3 36 0.00078 33.6 6.0 67 68-134 88-158 (713)
121 PF09324 DUF1981: Domain of un 51.9 56 0.0012 23.5 5.6 65 60-128 14-83 (86)
122 KOG2973 Uncharacterized conser 51.5 34 0.00074 31.4 5.3 70 84-154 196-298 (353)
123 KOG3678 SARM protein (with ste 50.7 29 0.00063 33.9 5.0 86 56-141 257-345 (832)
124 PF01465 GRIP: GRIP domain; I 50.6 28 0.0006 22.6 3.5 30 20-49 5-37 (46)
125 PF11698 V-ATPase_H_C: V-ATPas 50.4 65 0.0014 25.1 6.1 71 18-88 40-111 (119)
126 KOG1293 Proteins containing ar 49.7 50 0.0011 32.9 6.4 80 45-124 32-115 (678)
127 COG1413 FOG: HEAT repeat [Ener 49.6 1.4E+02 0.003 25.6 8.7 64 61-134 72-136 (335)
128 KOG0414 Chromosome condensatio 49.5 24 0.00051 37.2 4.4 100 64-173 961-1062(1251)
129 PF14771 DUF4476: Domain of un 48.5 25 0.00053 25.4 3.3 24 37-60 56-79 (95)
130 cd03569 VHS_Hrs_Vps27p VHS dom 47.8 29 0.00063 27.3 3.9 68 104-172 41-111 (142)
131 KOG3665 ZYG-1-like serine/thre 47.7 1.5E+02 0.0033 29.4 9.6 104 30-134 480-588 (699)
132 KOG0413 Uncharacterized conser 47.5 26 0.00056 36.8 4.3 97 64-171 969-1069(1529)
133 cd04374 RhoGAP_Graf RhoGAP_Gra 46.9 39 0.00084 28.1 4.7 14 62-75 90-103 (203)
134 PF12031 DUF3518: Domain of un 45.8 36 0.00078 30.1 4.4 42 75-116 185-228 (257)
135 PF08569 Mo25: Mo25-like; Int 45.4 73 0.0016 28.8 6.5 88 67-154 213-311 (335)
136 TIGR02270 conserved hypothetic 44.9 2.6E+02 0.0056 25.9 11.0 60 64-134 118-177 (410)
137 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 43.7 52 0.0011 27.1 4.9 14 62-75 74-87 (196)
138 PF08216 CTNNBL: Catenin-beta- 43.3 36 0.00077 26.3 3.6 40 40-79 64-103 (108)
139 PF11841 DUF3361: Domain of un 41.7 63 0.0014 26.5 5.0 57 76-132 73-130 (160)
140 COG5098 Chromosome condensatio 41.4 38 0.00082 34.5 4.3 99 65-173 935-1035(1128)
141 KOG3678 SARM protein (with ste 40.8 66 0.0014 31.6 5.7 91 28-119 271-363 (832)
142 PF08324 PUL: PUL domain; Int 40.8 42 0.00091 28.1 4.0 58 75-132 122-185 (268)
143 PF10363 DUF2435: Protein of u 40.2 55 0.0012 24.0 4.1 67 67-134 7-73 (92)
144 KOG1242 Protein containing ada 39.8 1.1E+02 0.0023 30.0 7.0 105 44-151 219-344 (569)
145 KOG1060 Vesicle coat complex A 39.3 1.1E+02 0.0023 31.6 7.0 58 71-133 151-209 (968)
146 cd03572 ENTH_epsin_related ENT 39.0 93 0.002 24.3 5.4 80 87-171 25-115 (122)
147 cd03568 VHS_STAM VHS domain fa 37.7 47 0.001 26.2 3.7 66 105-171 38-106 (144)
148 PF06012 DUF908: Domain of Unk 37.5 51 0.0011 29.2 4.2 69 78-150 237-310 (329)
149 KOG4413 26S proteasome regulat 36.9 1E+02 0.0022 29.0 6.1 112 38-150 102-219 (524)
150 PF10363 DUF2435: Protein of u 36.0 1E+02 0.0022 22.6 4.9 44 108-151 7-50 (92)
151 PF09675 Chlamy_scaf: Chlamydi 35.1 83 0.0018 24.6 4.5 60 5-65 14-84 (114)
152 smart00324 RhoGAP GTPase-activ 34.9 65 0.0014 25.0 4.0 27 106-132 99-125 (174)
153 cd04391 RhoGAP_ARHGAP18 RhoGAP 34.6 1E+02 0.0022 25.5 5.4 14 62-75 80-93 (216)
154 PF10165 Ric8: Guanine nucleot 34.0 3.9E+02 0.0084 24.8 11.9 142 11-152 12-192 (446)
155 cd04372 RhoGAP_chimaerin RhoGA 33.7 84 0.0018 25.5 4.6 14 62-75 75-88 (194)
156 KOG2229 Protein required for a 33.3 4.8E+02 0.01 25.8 10.1 100 23-132 21-128 (616)
157 PF07539 DRIM: Down-regulated 33.2 50 0.0011 26.1 3.1 23 107-129 20-42 (141)
158 PHA00099 minor capsid protein 33.2 98 0.0021 25.0 4.7 60 5-65 44-114 (147)
159 KOG1059 Vesicle coat complex A 32.3 1E+02 0.0023 31.3 5.7 84 64-152 182-268 (877)
160 cd04385 RhoGAP_ARAP RhoGAP_ARA 31.8 94 0.002 25.1 4.6 14 62-75 73-86 (184)
161 cd04402 RhoGAP_ARHGAP20 RhoGAP 31.6 86 0.0019 25.4 4.4 14 62-75 70-83 (192)
162 smart00755 Grip golgin-97, Ran 31.1 79 0.0017 20.6 3.3 23 20-43 4-26 (46)
163 PF06012 DUF908: Domain of Unk 31.1 1.1E+02 0.0024 27.1 5.3 50 78-134 7-56 (329)
164 PF07749 ERp29: Endoplasmic re 30.9 68 0.0015 23.5 3.3 32 18-50 1-32 (95)
165 cd04384 RhoGAP_CdGAP RhoGAP_Cd 30.6 90 0.002 25.5 4.4 25 145-169 133-158 (195)
166 COG5215 KAP95 Karyopherin (imp 30.6 1.2E+02 0.0025 30.5 5.6 93 34-132 190-291 (858)
167 cd04381 RhoGap_RalBP1 RhoGap_R 30.4 1.2E+02 0.0027 24.3 5.1 13 63-75 76-88 (182)
168 PF06595 BDV_P24: Borna diseas 30.1 31 0.00068 28.9 1.5 29 10-38 62-90 (201)
169 cd04398 RhoGAP_fRGD1 RhoGAP_fR 29.9 1.2E+02 0.0026 24.3 4.9 14 62-75 77-90 (192)
170 KOG1566 Conserved protein Mo25 29.8 1.1E+02 0.0024 28.1 5.1 89 74-162 223-322 (342)
171 PF01402 RHH_1: Ribbon-helix-h 29.2 39 0.00085 20.1 1.5 27 5-31 11-37 (39)
172 PF08389 Xpo1: Exportin 1-like 28.9 1.8E+02 0.004 21.2 5.5 48 36-86 100-147 (148)
173 PF11467 LEDGF: Lens epitheliu 28.4 1.5E+02 0.0032 22.6 4.9 62 108-173 10-75 (106)
174 PF10521 DUF2454: Protein of u 28.3 3.3E+02 0.0071 23.5 7.6 28 64-91 120-147 (282)
175 PF13494 DUF4119: Domain of un 28.2 1.2E+02 0.0027 22.9 4.2 49 4-53 31-79 (96)
176 cd00043 CYCLIN Cyclin box fold 27.6 90 0.0019 20.2 3.2 34 143-176 3-36 (88)
177 COG2042 Uncharacterized conser 27.5 24 0.00052 29.5 0.4 25 49-73 102-126 (179)
178 KOG2734 Uncharacterized conser 27.1 1.5E+02 0.0033 28.6 5.6 59 55-113 260-327 (536)
179 cd04373 RhoGAP_p190 RhoGAP_p19 27.0 1.3E+02 0.0027 24.4 4.6 27 106-132 111-137 (185)
180 cd04375 RhoGAP_DLC1 RhoGAP_DLC 26.9 1.2E+02 0.0027 25.3 4.6 22 7-31 11-32 (220)
181 cd00159 RhoGAP RhoGAP: GTPase- 26.8 1.5E+02 0.0032 22.4 4.7 23 53-75 47-69 (169)
182 KOG1242 Protein containing ada 26.4 6.4E+02 0.014 24.9 10.5 91 23-117 256-346 (569)
183 PF13764 E3_UbLigase_R4: E3 ub 26.2 2.5E+02 0.0054 28.6 7.3 80 63-154 84-177 (802)
184 KOG1248 Uncharacterized conser 26.2 4.1E+02 0.0088 28.5 8.8 64 107-174 830-897 (1176)
185 PF04499 SAPS: SIT4 phosphatas 26.2 5.6E+02 0.012 24.3 9.3 106 62-171 20-145 (475)
186 KOG3380 Actin-related protein 25.0 39 0.00086 27.6 1.2 74 32-116 65-149 (152)
187 cd04392 RhoGAP_ARHGAP19 RhoGAP 24.8 1.1E+02 0.0023 25.4 3.9 68 62-132 65-142 (208)
188 cd00183 TFIIS_I N-terminal dom 24.8 1.8E+02 0.004 20.2 4.6 55 116-174 18-72 (76)
189 KOG2152 Sister chromatid cohes 24.7 94 0.002 31.6 4.0 65 90-154 361-429 (865)
190 cd04386 RhoGAP_nadrin RhoGAP_n 24.6 2E+02 0.0042 23.5 5.3 14 62-75 78-91 (203)
191 KOG2023 Nuclear transport rece 24.6 1.8E+02 0.0039 29.7 5.8 102 63-169 128-239 (885)
192 KOG0211 Protein phosphatase 2A 24.5 6.8E+02 0.015 25.5 9.9 128 23-162 519-653 (759)
193 PF07539 DRIM: Down-regulated 24.5 3E+02 0.0064 21.7 6.1 82 61-152 15-100 (141)
194 KOG2734 Uncharacterized conser 24.5 2.6E+02 0.0056 27.1 6.6 101 56-156 169-284 (536)
195 PF09324 DUF1981: Domain of un 24.4 1.3E+02 0.0028 21.6 3.8 65 20-86 16-82 (86)
196 cd03567 VHS_GGA VHS domain fam 24.3 1.1E+02 0.0024 24.1 3.6 43 104-146 38-83 (139)
197 PF05004 IFRD: Interferon-rela 24.1 4.4E+02 0.0096 23.2 7.8 90 65-154 45-143 (309)
198 KOG0915 Uncharacterized conser 24.1 2.4E+02 0.0052 31.1 6.9 88 77-172 4-92 (1702)
199 PF01603 B56: Protein phosphat 24.1 5.1E+02 0.011 23.7 8.4 144 19-171 195-366 (409)
200 COG2427 Uncharacterized conser 24.0 2.8E+02 0.0061 21.9 6.0 86 39-132 53-139 (148)
201 smart00509 TFS2N Domain in the 23.9 2E+02 0.0044 20.1 4.6 55 116-174 16-70 (75)
202 PF11791 Aconitase_B_N: Aconit 23.6 1.3E+02 0.0029 24.6 4.0 68 63-130 41-120 (154)
203 COG5231 VMA13 Vacuolar H+-ATPa 23.3 2.4E+02 0.0052 26.4 6.0 94 77-175 163-265 (432)
204 PF04063 DUF383: Domain of unk 23.3 1.4E+02 0.0031 24.8 4.3 51 22-73 104-157 (192)
205 KOG0212 Uncharacterized conser 23.3 5.5E+02 0.012 25.7 8.7 162 11-177 240-408 (675)
206 cd04394 RhoGAP-ARHGAP11A RhoGA 22.9 1.6E+02 0.0034 24.2 4.5 14 62-75 73-86 (202)
207 cd04400 RhoGAP_fBEM3 RhoGAP_fB 22.9 1.6E+02 0.0034 23.8 4.4 14 62-75 82-95 (190)
208 PRK14981 DNA-directed RNA poly 22.7 1.6E+02 0.0034 22.4 4.1 47 36-93 31-79 (112)
209 PRK02318 mannitol-1-phosphate 22.4 3.1E+02 0.0068 24.6 6.6 56 57-112 295-359 (381)
210 PF14500 MMS19_N: Dos2-interac 22.1 1.2E+02 0.0025 26.3 3.7 44 86-134 194-238 (262)
211 KOG1832 HIV-1 Vpr-binding prot 22.0 63 0.0014 33.9 2.2 85 57-141 595-701 (1516)
212 PF06025 DUF913: Domain of Unk 21.6 70 0.0015 29.2 2.3 25 92-117 350-374 (379)
213 PF04924 Pox_A6: Poxvirus A6 p 21.3 3.9E+02 0.0084 24.8 6.9 106 23-134 139-271 (371)
214 PF11707 Npa1: Ribosome 60S bi 21.3 5.7E+02 0.012 22.5 8.7 135 17-170 129-298 (330)
215 PF00452 Bcl-2: Apoptosis regu 21.1 3.1E+02 0.0067 19.4 5.8 41 22-62 15-56 (101)
216 PF15606 Toxin_55: Putative to 21.0 1.1E+02 0.0024 22.4 2.7 28 9-36 31-58 (77)
217 PF11642 Blo-t-5: Mite allerge 20.5 62 0.0014 25.4 1.5 26 19-44 33-58 (118)
218 PF01417 ENTH: ENTH domain; I 20.4 3E+02 0.0065 20.5 5.3 83 84-171 24-117 (125)
219 KOG1059 Vesicle coat complex A 20.0 94 0.002 31.6 2.9 46 94-141 328-373 (877)
No 1
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=100.00 E-value=6.2e-70 Score=434.50 Aligned_cols=171 Identities=50% Similarity=0.753 Sum_probs=164.7
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHH
Q 030369 6 QRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVG 85 (178)
Q Consensus 6 ~~l~~rt~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAig 85 (178)
+++++|||++|+||+||||+||+|||+|+++|+||||+||||||||||+||.||||++|+|+|+|+|+++|+.|+|||||
T Consensus 1 ~~qk~rt~~hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIg 80 (173)
T KOG4646|consen 1 RTQKRRTPAHGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIG 80 (173)
T ss_pred CCcccCCCCccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHH
Q 030369 86 GICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFS 163 (178)
Q Consensus 86 gLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~ 163 (178)
||||+|+|++|+++|.+.+|||+||.|||||.+++|.+|++++|+|+.+ +.|.++++|+|+++|+||+. +++.+++
T Consensus 81 glCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~--s~s~~~r 158 (173)
T KOG4646|consen 81 GLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRE--SKSHDER 158 (173)
T ss_pred HHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHH--HhhHHHH
Confidence 9999999999999999999999999999999999999999999999988 47999999999999999996 4467999
Q ss_pred HhHHHHHHhhccCCC
Q 030369 164 NLAKAFLDKHVTENK 178 (178)
Q Consensus 164 nla~~fL~~~~~~~~ 178 (178)
|||++||++||++|.
T Consensus 159 nLa~~fl~~~~~~~~ 173 (173)
T KOG4646|consen 159 NLASAFLDKHVHANT 173 (173)
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999999874
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.44 E-value=2.9e-12 Score=92.40 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=98.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc-hhhHH
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP-ANAAI 99 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~-~nk~~ 99 (178)
.++.|++-.+++ +.+.++.++..|+|++.+ |.++..+.+.++++.++++|..+++.+++.|.++|+|++.++ .....
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 345566666655 488999999999999976 999999999999999999999999999999999999999886 56777
Q ss_pred hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+.+.|.++.++++|.+++.++...|+.+|.+|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 788999999999999999999999999999886
No 3
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.18 E-value=3e-10 Score=97.73 Aligned_cols=128 Identities=27% Similarity=0.343 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (178)
Q Consensus 21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I 100 (178)
+-+|.|+.-.+.|++...+|+++..|.|.|+.|.|++.+|++|+++++...|..+++.+.+.|..+|.|++.+.+|+.+|
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHhh-cCC-chhHHHHHHHHHHHhcCCccccccc---chHHHHHHH
Q 030369 101 TKSGGIPLIIECL-SSP-VRNTVNHALGALYYLCSMSTKEEIL---KPEVVDVIR 150 (178)
Q Consensus 101 ~~~gGi~~li~lL-sS~-~~evv~~AlttL~~L~~~~sr~~I~---~p~ll~ll~ 150 (178)
-.. |+.+.+.. ++| +.+++..++..|.+|........+. .|.++.++.
T Consensus 92 k~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 92 KMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH
Confidence 764 88777765 444 6789999999999997553223333 366666654
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=4.1e-10 Score=81.07 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=91.1
Q ss_pred hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-c
Q 030369 59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-T 136 (178)
Q Consensus 59 LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-s 136 (178)
+.+.|+++.+++.|..++..+++.|+.+|+|+|.+ |.....+.+.|++|.++++|+++++.++.+|+.+|++|+... .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 45789999999999999999999999999999988 999999999999999999999999999999999999999764 2
Q ss_pred -ccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 137 -KEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 137 -r~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
+..+. .|.++++|... +.+++..|..+|..-|
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~------~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSS------NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcC------CHHHHHHHHHHHHHhh
Confidence 23333 36666666443 3567777777776543
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.98 E-value=6.1e-09 Score=109.45 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=115.0
Q ss_pred HHHHHHHhhcC-ChHHHHHHHHHHhhhhc-cCcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHH
Q 030369 23 LQELVSQFQNS-TDEERKEKIVANLANFA-YDPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAI 99 (178)
Q Consensus 23 lq~LV~efq~t-~~~e~keqvlanLaNfA-yDP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~ 99 (178)
...||.+.... ++.+.|+++++.|--|+ -++.|+..+.+ .|++|+++..|..++....+.|++.|.|+|.++.+|..
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~ 94 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVK 94 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44678888766 36788999999999999 77999999986 89999999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc----cccccc-----chHHHHHHHHh
Q 030369 100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS----TKEEIL-----KPEVVDVIRRY 152 (178)
Q Consensus 100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~----sr~~I~-----~p~ll~ll~~~ 152 (178)
|...|+||+|+.+|.+++++...+|..+|++|.... .+..|. .|+|+++|+.-
T Consensus 95 Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 95 VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 999999999999999999999999999999998642 233333 59999999864
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.96 E-value=5e-09 Score=110.12 Aligned_cols=119 Identities=15% Similarity=0.276 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHH
Q 030369 33 STDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLII 110 (178)
Q Consensus 33 t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li 110 (178)
..+.|.|++...+|++.+ .++.+|..+.+.+.++.+++.|..+++.+++.|...|.|++.. ..++..|.+.||||+++
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 346799999999999999 6699999999999999999999999999999999999999974 67899999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHH
Q 030369 111 ECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRR 151 (178)
Q Consensus 111 ~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~ 151 (178)
++|++++.+++.+|+++|.+|+.. +.+..|. .||++++|+.
T Consensus 495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s 541 (2102)
T PLN03200 495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN 541 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 999999999999999999999964 2345453 4999999964
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.93 E-value=3.9e-09 Score=102.13 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=100.3
Q ss_pred hhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHH
Q 030369 46 LANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHAL 125 (178)
Q Consensus 46 LaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~Al 125 (178)
|.|+|-||.+...+++-+++.+++.+|+.+|..++-.+++.|.+||..+.||..|.+.|.|+.|++++.|++++++..++
T Consensus 273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aL 352 (708)
T PF05804_consen 273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVAL 352 (708)
T ss_pred HHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-ccccccc----chHHHHHHH
Q 030369 126 GALYYLCSM-STKEEIL----KPEVVDVIR 150 (178)
Q Consensus 126 ttL~~L~~~-~sr~~I~----~p~ll~ll~ 150 (178)
..|++|+.+ ..|..+. .|.++.+|.
T Consensus 353 rlL~NLSfd~~~R~~mV~~GlIPkLv~LL~ 382 (708)
T PF05804_consen 353 RLLFNLSFDPELRSQMVSLGLIPKLVELLK 382 (708)
T ss_pred HHHHHhCcCHHHHHHHHHCCCcHHHHHHhC
Confidence 999999987 5788888 499999984
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.87 E-value=2.1e-08 Score=97.19 Aligned_cols=131 Identities=22% Similarity=0.262 Sum_probs=114.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (178)
Q Consensus 21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I 100 (178)
..+.-||.-.+.. +.|..--++.-|.+.+..+.|+..+.+.|+++.++..|..+++.+++-|+..|+|||-|+..+.++
T Consensus 290 ~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m 368 (708)
T PF05804_consen 290 GIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM 368 (708)
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4456777766554 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHHHhhh
Q 030369 101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIRRYAA 154 (178)
Q Consensus 101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~~~~~ 154 (178)
.+.|.||.++.+|++++ ....++.+||+|+.+ .+|..+. .|.++++|.....
T Consensus 369 V~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 369 VSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999999998753 445699999999977 5777776 4888898877644
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.3e-08 Score=92.97 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=115.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~ 102 (178)
...||+=| ++++..+|-|+..+|-|.|.|..=..-+.+.|.+|+++..|+++...++--..+||-|+++-|.|..-|.+
T Consensus 253 v~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d 331 (550)
T KOG4224|consen 253 VPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD 331 (550)
T ss_pred HHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec
Confidence 45788855 55588899999999999999998888899999999999999999989999999999999999999999999
Q ss_pred cCChhHHHHhhcCCc-hhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhh
Q 030369 103 SGGIPLIIECLSSPV-RNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAA 154 (178)
Q Consensus 103 ~gGi~~li~lLsS~~-~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~ 154 (178)
.|=+.|++++|+-.+ ++++.||+.+|++|..+ .++..|. +|-+.++++.-..
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv 390 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV 390 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh
Confidence 999999999996665 67999999999999975 4788888 5888888776655
No 10
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=98.47 E-value=6.6e-08 Score=83.37 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=67.1
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc
Q 030369 15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP 94 (178)
Q Consensus 15 ~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~ 94 (178)
.|.+|+||+-.+++++.+|+ ...++.+|++||||||.||.+. ++.|+.++...+. ..|++...||.|.|.
T Consensus 6 f~~~tkd~I~y~lg~g~t~k---d~~~~yeN~~dF~~lPt~~v~p-----~~~~~~~~~~~d~--~~~~~~lhgeqy~e~ 75 (272)
T KOG1206|consen 6 FKYTTKDCILYALGLGATSK---DLKYTYENDPDFQVLPTFAVIP-----ATATLLMDNLVDN--FDYAMLLHGEQYFEL 75 (272)
T ss_pred ccccHHHHHHHHhccccchh---HHHHHhccCccceeccceeeeh-----hHHHHHhhccchh--HHHHHHHHHHHHHHH
Confidence 78999999999999999998 7889999999999999999999 7788887776655 889999999999987
Q ss_pred hhhHHhh
Q 030369 95 ANAAIIT 101 (178)
Q Consensus 95 ~nk~~I~ 101 (178)
.. ..+.
T Consensus 76 ~~-~l~~ 81 (272)
T KOG1206|consen 76 CT-TLPS 81 (272)
T ss_pred Hc-cccc
Confidence 66 4444
No 11
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.37 E-value=4.6e-07 Score=56.71 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=38.1
Q ss_pred CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+|.+++.|.+.||||+|++||++++++++.+|+.+|.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999986
No 12
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.8e-06 Score=76.02 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=106.7
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhcc--ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhc
Q 030369 26 LVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLN--VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKS 103 (178)
Q Consensus 26 LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~--vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~ 103 (178)
||. .-.+++.+.|+-.+-.+.|-|-|..+++.|.|.+ +++.++|....++++..--|..+|-|++.|..-+..|.+.
T Consensus 213 LVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 213 LVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred hhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 443 3356699999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhcCCchhHHHHHHHHHHHhc-CCccccccc----chHHHHHHH
Q 030369 104 GGIPLIIECLSSPVRNTVNHALGALYYLC-SMSTKEEIL----KPEVVDVIR 150 (178)
Q Consensus 104 gGi~~li~lLsS~~~evv~~AlttL~~L~-~~~sr~~I~----~p~ll~ll~ 150 (178)
||||.++++|.||.--.++-++.|+-++. .|-+..-|. ..|++++|+
T Consensus 292 g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~ 343 (550)
T KOG4224|consen 292 GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR 343 (550)
T ss_pred CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHh
Confidence 99999999999888777788899998876 333333333 267888775
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=1.3e-05 Score=75.60 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=102.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII 100 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I 100 (178)
++.||..+....+...|..+.=.|.|-| -.+.+....-+.|++++|+.+|.++++.+.|=|+-+|.|.+-| |..+.++
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 5678998888888999999999999999 6799999999999999999999999999999999999999999 9999999
Q ss_pred hhcCChhHHHHhhcCCch-hHHHHHHHHHHHhcCC
Q 030369 101 TKSGGIPLIIECLSSPVR-NTVNHALGALYYLCSM 134 (178)
Q Consensus 101 ~~~gGi~~li~lLsS~~~-evv~~AlttL~~L~~~ 134 (178)
+.+|.++++..++..+++ -.+.++.=+|.+||.-
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 999999999999977766 5778888999999944
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.20 E-value=1.5e-05 Score=68.70 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=89.7
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhh-hcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcC
Q 030369 27 VSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDC-ITEP-NEKLVEFGVGGICNASVDPANAAIITKSG 104 (178)
Q Consensus 27 V~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~-L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~g 104 (178)
|...=.+++...|++.+-+|+|+|.+..|...++. .++-.+.. ++.+ |..++.-|...|.||+++......+. +
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~ 134 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--N 134 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--h
Confidence 44445668999999999999999999999998875 34444443 3332 77888999999999999998887776 4
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL 141 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~ 141 (178)
+++.+++||++++..++.+++.+|++|... ....++.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll 172 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL 172 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence 799999999999999999999999999966 4344444
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.12 E-value=1.5e-05 Score=77.40 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHh-----hhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFL-----RQLNVLELFLDCITEPNEKLVEFGVGGICNASV 92 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~L-----rqL~vidlfld~L~~~n~~l~EfAiggLcNL~~ 92 (178)
+.-||-.|- .+++....|.....|-|.+ .++-=-.++ ++=++++.+++.|..+++.+++-|+|.|-||+.
T Consensus 520 Vr~Yl~Ll~----~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 520 VRPYLLLLA----LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred HHHHHHHHH----HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 455665543 5778888888888888887 554433444 555799999999999999999999999999999
Q ss_pred CchhhHHhhhcCChhHHHHhhcC------CchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccch
Q 030369 93 DPANAAIITKSGGIPLIIECLSS------PVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNV 160 (178)
Q Consensus 93 D~~nk~~I~~~gGi~~li~lLsS------~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~ 160 (178)
|+.||+.|- +++++.+++||.. .++|++.++.-||.+++.. +..++.. +|-++-+.++ .+ ++
T Consensus 596 d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~---S~ 669 (717)
T KOG1048|consen 596 DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QH---SP 669 (717)
T ss_pred Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cC---CH
Confidence 999999998 7899999999922 2479999999999999954 4444444 5777777666 22 36
Q ss_pred hHHHhHHHHHHhh
Q 030369 161 SFSNLAKAFLDKH 173 (178)
Q Consensus 161 ~~~nla~~fL~~~ 173 (178)
+..+.|..||.+-
T Consensus 670 k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 670 KEFKAASSVLDVL 682 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999763
No 16
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.11 E-value=6.2e-06 Score=50.08 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=37.0
Q ss_pred CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
++.++..|.+.|||++|+++|++++++++.+++.+|.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3558999999999999999999999999999999999986
No 17
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=3.8e-06 Score=52.51 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=39.2
Q ss_pred CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV 92 (178)
Q Consensus 52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~ 92 (178)
||.|...+.+.|+++.++++|..+++.+++.|.++|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999973
No 18
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.90 E-value=3.2e-05 Score=58.80 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=56.4
Q ss_pred HHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCC-chhhHHhhh
Q 030369 39 KEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVD-PANAAIITK 102 (178)
Q Consensus 39 keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D-~~nk~~I~~ 102 (178)
|.-++.=+||.+|+ |.|...+|+++-|+++|++=. +.||.+.|.|+.||=|||.+ ++|+++|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 55677888999987 999999999999999999854 55999999999999999977 889988854
No 19
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.00023 Score=65.30 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCc--HHHHHHHHHHHHhhcCC---ch
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPN--EKLVEFGVGGICNASVD---PA 95 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n--~~l~EfAiggLcNL~~D---~~ 95 (178)
|+|.| .+++.+.+||++=+|.|-|-| |.=++|.-+-|+++.+|..|.++- ..++..|+=-|.|||-- |.
T Consensus 162 fiqlL-----~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 162 FIQLL-----SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred HHHHH-----cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 45555 357899999999999999988 778899999999999999999874 49999999999999943 44
Q ss_pred hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc----chHHHHHHH
Q 030369 96 NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL----KPEVVDVIR 150 (178)
Q Consensus 96 nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~----~p~ll~ll~ 150 (178)
+-.-|.. .+|.+.+|+-|.|+||+..|.=++.||++-. .-.+|. -++|+++|-
T Consensus 237 ~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs 295 (526)
T COG5064 237 DWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS 295 (526)
T ss_pred chHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence 4445543 4999999999999999999999999999653 222232 277888773
No 20
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00042 Score=62.60 Aligned_cols=139 Identities=25% Similarity=0.244 Sum_probs=109.0
Q ss_pred CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHH
Q 030369 33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE 111 (178)
Q Consensus 33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~ 111 (178)
+.+.+.||-.+.||.=+.=|=.|-.-|..+|-+.+.+..|..++..+.+.|+-=|..++ ..|..++++++.||++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 35778899999999999988899999999999999999999999999999999888886 56999999999999999999
Q ss_pred hhcCCchhHH-HHHHHHHHHhcCC---cccccccc---hHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369 112 CLSSPVRNTV-NHALGALYYLCSM---STKEEILK---PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT 175 (178)
Q Consensus 112 lLsS~~~evv-~~AlttL~~L~~~---~sr~~I~~---p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~ 175 (178)
.|++.+++++ ..|+-+++.|+.- ....-..+ ..|.++|++ .+..+|+.-+|..++.+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~----~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS----NNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc----CCcchHHHHHHHHHHHHHHH
Confidence 9988777777 6667777777622 22222223 444444433 23457888888877776654
No 21
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00045 Score=65.29 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=121.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--chhhHH
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAI 99 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~nk~~ 99 (178)
|..|-..+..++.+--|+++.=.+.|-+ -.+.--.+.-..|++|.++.+|+..+-.+..-|.-+|+|++.. +.--.+
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 3344444446766667888888999976 5566667777789999999999999999999999999999866 555566
Q ss_pred hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccc----c-----cchHHHHHHHHhhhhcccchhHHHhHHHH
Q 030369 100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEE----I-----LKPEVVDVIRRYAAAESVNVSFSNLAKAF 169 (178)
Q Consensus 100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~----I-----~~p~ll~ll~~~~~~~~~~~~~~nla~~f 169 (178)
+.+.|-|+++..+|.-+|..++..++.+|+++..- +.... - .----++.|..++.|+ |.-|...|-..
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he--n~~Iy~~A~~I 480 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE--NEEIYKKAYKI 480 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc--cHHHHHHHHHH
Confidence 78999999999999999999999999999999844 22221 1 1245678888999877 78999999999
Q ss_pred HHhhccC
Q 030369 170 LDKHVTE 176 (178)
Q Consensus 170 L~~~~~~ 176 (178)
+++|.+.
T Consensus 481 I~~yf~~ 487 (514)
T KOG0166|consen 481 IDTYFSE 487 (514)
T ss_pred HHHhcCC
Confidence 9999875
No 22
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.68 E-value=7.7e-05 Score=45.15 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=37.4
Q ss_pred CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc
Q 030369 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS 91 (178)
Q Consensus 52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~ 91 (178)
+|.|+..+++.|+++.++.+|.++++.+++.|+++|.|++
T Consensus 1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3559999999999999999999999999999999999997
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.34 E-value=0.0012 Score=61.95 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC-----cHHHHHHHHHHHHhhcCCch
Q 030369 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-----NEKLVEFGVGGICNASVDPA 95 (178)
Q Consensus 21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-----n~~l~EfAiggLcNL~~D~~ 95 (178)
++|+-+++-|..+ +....---...++|||+.-.|..|+.+=+.+.-+++||..+ |..++.-+..+|-|+..-..
T Consensus 315 ~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 315 QFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4899999988776 44444444556899999999999999999999999999863 77788888899999999999
Q ss_pred hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc-chHHHHHHHHhhhhcc
Q 030369 96 NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL-KPEVVDVIRRYAAAES 157 (178)
Q Consensus 96 nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~-~p~ll~ll~~~~~~~~ 157 (178)
||..+...|-.+-|...|.+..|-++---+.|+--+.+.+ ...+.. -|.+++.|..|+.|++
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 9999998887787777775555556655566666666553 223333 4999999999999775
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.32 E-value=0.0015 Score=56.86 Aligned_cols=138 Identities=19% Similarity=0.186 Sum_probs=95.6
Q ss_pred cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcC----CcHHHHHHHHHHHHhhcCCchhhHHhhhcCCh
Q 030369 32 NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITE----PNEKLVEFGVGGICNASVDPANAAIITKSGGI 106 (178)
Q Consensus 32 ~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~----~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi 106 (178)
+.++.-.+++...+|++++ ++|..-.... -++++.|++.|.+ ++..++..|+.+|.++.-.+..+..+.+.||+
T Consensus 115 ~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v 193 (312)
T PF03224_consen 115 DRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGV 193 (312)
T ss_dssp S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcH
Confidence 4557778999999999998 6665554433 5677888888875 46678899999999999999999999999999
Q ss_pred hHHHHhh------c-CCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 107 PLIIECL------S-SPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 107 ~~li~lL------s-S~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
+.++++| + +.+.+..=+++-++|-|.=+ +...++. .|.++++++.-.. .++.-+|-+-|--.+
T Consensus 194 ~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~K-----EKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 194 SPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIK-----EKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--S-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhccc-----chHHHHHHHHHHHHH
Confidence 9999999 2 22466667888888888744 3333343 4777777765443 467777766665544
Q ss_pred c
Q 030369 175 T 175 (178)
Q Consensus 175 ~ 175 (178)
+
T Consensus 269 ~ 269 (312)
T PF03224_consen 269 S 269 (312)
T ss_dssp S
T ss_pred h
Confidence 3
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.31 E-value=0.00061 Score=65.79 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=66.7
Q ss_pred hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch-hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPA-NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 59 LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~-nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+...+|+++++..|..++..+.--+.|+|||+.+|+. -|..++++|||+.+++.++++++++..+++-.|+.++
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 6778999999999988888888899999999999955 4778899999999999999999999999888887766
No 26
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.25 E-value=0.0017 Score=56.45 Aligned_cols=132 Identities=20% Similarity=0.166 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhc---CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhh------c-CCcHHHHHHHHHHHHhh
Q 030369 21 QYLQELVSQFQN---STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCI------T-EPNEKLVEFGVGGICNA 90 (178)
Q Consensus 21 ~ylq~LV~efq~---t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L------~-~~n~~l~EfAiggLcNL 90 (178)
+.|+.+++=..+ +++.+.+.-++..|+++...|..+..+-+-+.++.+.+.| + ..+..++=.++.|+|-|
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 344444443332 2345667888899999999999999999999999999999 2 23788999999999999
Q ss_pred cCCchhhHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCCcc---ccccc---chHHHHHHHHh
Q 030369 91 SVDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSMST---KEEIL---KPEVVDVIRRY 152 (178)
Q Consensus 91 ~~D~~nk~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~~s---r~~I~---~p~ll~ll~~~ 152 (178)
+=++.....+...+=|+.+++++ .++.+-|+.=++.++-||+.... ...+. .|++++.|+.-
T Consensus 226 SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 226 SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 99999999999998789999998 67789999999999999997632 22222 37888877643
No 27
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0012 Score=60.70 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHHHhhhhccCcccHHHh-hhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCC
Q 030369 39 KEKIVANLANFAYDPYNYTFL-RQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSP 116 (178)
Q Consensus 39 keqvlanLaNfAyDP~N~~~L-rqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~ 116 (178)
+-.+.=.|-|-|.-.-+..+. ...|++|+|+.+|.+.+..+.|-|+=+|-|.+-| +..+++|++.|.++++..+|-|.
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 445556788999887777665 4689999999999999999999999999999988 78999999999999999998444
Q ss_pred c--hhHHHHHHHHHHHhcC
Q 030369 117 V--RNTVNHALGALYYLCS 133 (178)
Q Consensus 117 ~--~evv~~AlttL~~L~~ 133 (178)
. ...+.++-=+|.+||.
T Consensus 212 ~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 212 AIHISMLRNATWTLSNLCR 230 (526)
T ss_pred cchHHHHHHhHHHHHHhhC
Confidence 3 4778999999999993
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.08 E-value=0.013 Score=54.79 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=99.6
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHhhcCC-hHHHHHHHHHHhhhhccCccc----------------HHHhhhccChHHHH
Q 030369 7 RQEERTGRSGTPRLQYLQELVSQFQNST-DEERKEKIVANLANFAYDPYN----------------YTFLRQLNVLELFL 69 (178)
Q Consensus 7 ~l~~rt~~~g~~R~~ylq~LV~efq~t~-~~e~keqvlanLaNfAyDP~N----------------~~~LrqL~vidlfl 69 (178)
.+.++..+ -.|++-|..|-++....+ -.+-.++++=+..|= .++.+ ...+ .-+..+.+.
T Consensus 8 ~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~ 83 (503)
T PF10508_consen 8 LLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNT-SNREQVELICDILKRLLSALSPDSL-LPQYQPFLQ 83 (503)
T ss_pred HHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhh-cChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHH
Confidence 34455544 678888888888777776 344455553333331 12222 2222 346678888
Q ss_pred hhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh-hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-ccccccchHHHH
Q 030369 70 DCITEPNEKLVEFGVGGICNASVDPANAAIIT-KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEILKPEVVD 147 (178)
Q Consensus 70 d~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~-~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-sr~~I~~p~ll~ 147 (178)
..|..+++.+++.|.-.|.++.-++.....+. +.+-++.|+.||.+++.+|...|+.+|..++... .-..+..+.++.
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~ 163 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLS 163 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHH
Confidence 88999999999999999999988877766654 4666799999999999999999999999998653 333444455555
Q ss_pred HHHHhhh
Q 030369 148 VIRRYAA 154 (178)
Q Consensus 148 ll~~~~~ 154 (178)
.|...-.
T Consensus 164 ~L~~l~~ 170 (503)
T PF10508_consen 164 KLKSLMS 170 (503)
T ss_pred HHHHHHh
Confidence 5554444
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.01 E-value=0.008 Score=56.10 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCccc-HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYN-YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N-~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~ 98 (178)
.+|.+.|..-.+ .++...|+-++..|.+.+.++.. ...+.+-++++.++.||..++..+.+-|+..|.+++-.+..-+
T Consensus 76 ~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 76 PQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 445555555444 46889999999999999988766 5556778999999999999999999999999999999888888
Q ss_pred HhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc
Q 030369 99 IITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL 141 (178)
Q Consensus 99 ~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~ 141 (178)
.++.+++++.|.++++.+++.+......++..++.- .....+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 899999999999999887788888999999888733 3444444
No 30
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.012 Score=54.11 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHH---HhhcCCchhhHHhhhcCChhHHHHh
Q 030369 37 ERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGI---CNASVDPANAAIITKSGGIPLIIEC 112 (178)
Q Consensus 37 e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggL---cNL~~D~~nk~~I~~~gGi~~li~l 112 (178)
+.--.....|--.|-.-.=.+.+.++|-++.++.|++..|+ ...+.+=-|+ --++-.-.+|..|.+.||.+.|+.+
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHH
Confidence 33334455566666555557889999999999999998543 3344444444 4445667899999999999999999
Q ss_pred h--cCCchhHHHHHHHHHHHhc--CC-cccccccc---hHHHHHHHHhhhhcccc
Q 030369 113 L--SSPVRNTVNHALGALYYLC--SM-STKEEILK---PEVVDVIRRYAAAESVN 159 (178)
Q Consensus 113 L--sS~~~evv~~AlttL~~L~--~~-~sr~~I~~---p~ll~ll~~~~~~~~~~ 159 (178)
+ .+.+|.|+..++.++.+|+ .| .|++.|-. ...++-|+++.++--++
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQ 391 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQ 391 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHH
Confidence 8 5667999998888888887 33 57887773 77788888887755333
No 31
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.86 E-value=0.0033 Score=61.54 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=73.2
Q ss_pred CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC---chhhHHhhhcCChhHHHHhhc-CCchhHHHHHHHH
Q 030369 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD---PANAAIITKSGGIPLIIECLS-SPVRNTVNHALGA 127 (178)
Q Consensus 52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D---~~nk~~I~~~gGi~~li~lLs-S~~~evv~~Altt 127 (178)
|-.=+.-.|+++-|+.+++.|..+++.++..|.|+|=||+-+ -.||..|.+.+||+.++++|. ..|-||....-.+
T Consensus 264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~ 343 (717)
T KOG1048|consen 264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGI 343 (717)
T ss_pred hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHH
Confidence 444556779999999999999999999999999999999854 348999999999999999994 5789999999999
Q ss_pred HHHhcCC
Q 030369 128 LYYLCSM 134 (178)
Q Consensus 128 L~~L~~~ 134 (178)
||+|.+.
T Consensus 344 LWNLSS~ 350 (717)
T KOG1048|consen 344 LWNLSSN 350 (717)
T ss_pred Hhcccch
Confidence 9999855
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.82 E-value=0.0091 Score=41.31 Aligned_cols=86 Identities=14% Similarity=0.254 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~ 102 (178)
|..|+..+.+.++...|..++..|.++. .-.+++.+++.+..+|+.+...|+-+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 4567788878889999999998888542 2277999999999999999999999999872 2
Q ss_pred cCChhHHHHhhcCCchhH-HHHHHHHH
Q 030369 103 SGGIPLIIECLSSPVRNT-VNHALGAL 128 (178)
Q Consensus 103 ~gGi~~li~lLsS~~~ev-v~~AlttL 128 (178)
...++.|++++.+++..+ ...|+.+|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 346889999996655444 46666654
No 33
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.75 E-value=0.0025 Score=52.03 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc---
Q 030369 67 LFLDCITE-PNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL--- 141 (178)
Q Consensus 67 lfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~--- 141 (178)
-+++--.+ .|..-.|--++-|+|.+-||.|-.+..+-+.++..+.+|+.+++-.|..+|+.|++||-+ .+.+.|+
T Consensus 20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~ 99 (173)
T KOG4646|consen 20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREAL 99 (173)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhc
Confidence 34444443 366778888999999999999999999999999999999999999999999999999987 4666666
Q ss_pred -chHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369 142 -KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT 175 (178)
Q Consensus 142 -~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~ 175 (178)
.|-++.++ |+- +.-..+-|..||.--|-
T Consensus 100 g~plii~~l-----ssp-~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 100 GLPLIIFVL-----SSP-PEITVHSAALFLQLLEF 128 (173)
T ss_pred CCceEEeec-----CCC-hHHHHHHHHHHHHHhcC
Confidence 47666665 331 34556666666654443
No 34
>PRK09687 putative lyase; Provisional
Probab=96.27 E-value=0.018 Score=50.11 Aligned_cols=31 Identities=3% Similarity=-0.083 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIVANLANFA 50 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA 50 (178)
.+-+..|..-+.+.++.+.|..++..|.++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 4577777777777788999999999998885
No 35
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.11 Score=48.02 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=110.9
Q ss_pred HHHHhhcCChHHHH---HHHHHHhhhhccCcccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369 26 LVSQFQNSTDEERK---EKIVANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVD-PANAAI 99 (178)
Q Consensus 26 LV~efq~t~~~e~k---eqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D-~~nk~~ 99 (178)
|+...-++..++.| .+++.-|--.|-.-.|+.++.+-|..|.++..+. .+||.+++-+.++||-+|+- |.+...
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~ 367 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK 367 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH
Confidence 34444455555444 6889999999989999999999999999999887 46999999999999999976 999999
Q ss_pred hhhcCChhHHHHhh-cCCc-hhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 100 ITKSGGIPLIIECL-SSPV-RNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 100 I~~~gGi~~li~lL-sS~~-~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
++|.||-...++-+ ..|. -.++.+|-.++-|++.- +.++.+..--+=++++ -+.+. |+-....|++=|-|-
T Consensus 368 ~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~-~A~~~--h~tce~~akaALRDL 442 (461)
T KOG4199|consen 368 AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIR-TAKAN--HETCEAAAKAALRDL 442 (461)
T ss_pred HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHH-HHHhc--CccHHHHHHHHHHhc
Confidence 99999999999998 4443 57889999999999844 3455555444444443 33322 566777888877764
No 36
>PF05536 Neurochondrin: Neurochondrin
Probab=96.21 E-value=0.027 Score=53.52 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHh
Q 030369 34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC 112 (178)
Q Consensus 34 ~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~l 112 (178)
+..+.+.=.++=|+-|+.||.--.+=.-++-||.|+++++.... .+++-|..+|+.++.-|..++.+.+.|+|+.+.+.
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 45667777788899999999998887778999999999998776 99999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHhcCC
Q 030369 113 LSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 113 LsS~~~evv~~AlttL~~L~~~ 134 (178)
..++ +-..-.|+..+.+|+..
T Consensus 149 ~~~~-~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 149 IPNQ-SFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHhC-cchHHHHHHHHHHHHHh
Confidence 9774 55667777777777754
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.21 E-value=0.02 Score=39.60 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=49.0
Q ss_pred hHHHHhhh-cCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 65 LELFLDCI-TEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 65 idlfld~L-~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
||.+++.| .++++.++..|+-+|+++. ++ ..+|.|+++++++++.|...|+.+|-.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 57899999 7789999999999999652 11 34899999999999999999999998763
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.17 E-value=0.041 Score=44.31 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc-chHHHHHHHHhhh
Q 030369 76 NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL-KPEVVDVIRRYAA 154 (178)
Q Consensus 76 n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~-~p~ll~ll~~~~~ 154 (178)
++.+.-.++.++|=||.-+++-..- -+|.+..||+++++.|-..|+.+|..|+... -|. .+.++..+...-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHc
Confidence 4667788899999998876653332 3899999999999999999999999998541 111 2444233322223
Q ss_pred hcccchhHHHhHHHHHHhhccC
Q 030369 155 AESVNVSFSNLAKAFLDKHVTE 176 (178)
Q Consensus 155 ~~~~~~~~~nla~~fL~~~~~~ 176 (178)
+.|+.+++.|..|+.+...+
T Consensus 74 --D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 --DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred --CCCHHHHHHHHHHHHHHHHh
Confidence 56899999999999887544
No 39
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.06 E-value=0.024 Score=49.55 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=69.0
Q ss_pred cCcccHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhh--cCCchhHHHHHHH
Q 030369 51 YDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECL--SSPVRNTVNHALG 126 (178)
Q Consensus 51 yDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lL--sS~~~evv~~Alt 126 (178)
-.|.=+....+-..+.+|++.|++. .+.+.--++-.|..+.+| |.|...+.+.+|+..|+.++ ++.+.++..-.++
T Consensus 121 LHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~E 200 (257)
T PF08045_consen 121 LHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIE 200 (257)
T ss_pred cCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHH
Confidence 4677788888899999999999664 556666667666666666 99999999999999999999 4446889899999
Q ss_pred HHHHhcCC
Q 030369 127 ALYYLCSM 134 (178)
Q Consensus 127 tL~~L~~~ 134 (178)
.||+.+.|
T Consensus 201 FL~fyl~~ 208 (257)
T PF08045_consen 201 FLYFYLMP 208 (257)
T ss_pred HHHHHHcc
Confidence 99988866
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.87 E-value=0.0069 Score=63.45 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=73.1
Q ss_pred HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 56 ~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
+..||+-++|--+|..|.+..-.+|-.|-|.||||++ +|.-+++|.+.|.++.+.+|++|.+..+..-+..+|-||++-
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 3568999999999999999999999999999999975 699999999999999999999998899999999999999844
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.69 E-value=0.19 Score=45.45 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=85.8
Q ss_pred CCCChHHHHHHHHHHhh----------------cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH
Q 030369 15 SGTPRLQYLQELVSQFQ----------------NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE 77 (178)
Q Consensus 15 ~g~~R~~ylq~LV~efq----------------~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~ 77 (178)
+...|.+|++.|+--.- .|++.+.|.=+--.+..++ .||. --.| +++.+..-|..+|+
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l----~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLIL----IINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHH----HHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHH----HHHHHHHhhcCCCH
Confidence 33457778887765432 3456666665555555666 3444 1122 78888888999999
Q ss_pred HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cc-cccccchHHHHHH
Q 030369 78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--ST-KEEILKPEVVDVI 149 (178)
Q Consensus 78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~s-r~~I~~p~ll~ll 149 (178)
.++-.|+-+|||++ +|+-.+.+ ++.|.++|+++++.|-+.|+.+++.+... +. ... ..|.+.++|
T Consensus 94 ~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL 161 (526)
T PF01602_consen 94 YIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLL 161 (526)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHT
T ss_pred HHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhc
Confidence 99999999999988 66666665 78999999999999999999999888733 22 222 355555555
No 42
>PRK09687 putative lyase; Provisional
Probab=95.18 E-value=0.13 Score=44.78 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~ 102 (178)
+..|..-+.+. +.+.|..++..|.++. .-.+++.++..|..++..+...|+.+|-++..+..
T Consensus 130 ~~~l~~~~~D~-~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------- 191 (280)
T PRK09687 130 VEQSQITAFDK-STNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP------- 191 (280)
T ss_pred HHHHHHHhhCC-CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-------
Confidence 33443333444 6788889998887543 33489999999999999999999999999843211
Q ss_pred cCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 103 SGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 103 ~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
..++.|++.|.+++++|...|+..|-.+-
T Consensus 192 -~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 192 -DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 23678999999999999988888886543
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.87 E-value=0.34 Score=45.20 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhhcCCchh
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASVDPAN 96 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL~~D~~n 96 (178)
-..|++-|.+.++..++.+.+.-++.-|++...=|.-+...-+.+.++.+++.|+.. +..++=.++.|+|=|+=++..
T Consensus 141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~ 220 (429)
T cd00256 141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHA 220 (429)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHH
Confidence 334667788888777778888888888999988888888888888999999999863 568888999999999999887
Q ss_pred hHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCC
Q 030369 97 AAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 97 k~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~ 134 (178)
.+...+.+-|+.+++++ .++.+-|+.=++.+|.||++.
T Consensus 221 ~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 221 AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 77777778889999999 777899999999999999975
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.67 E-value=0.42 Score=43.25 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHH
Q 030369 33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE 111 (178)
Q Consensus 33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~ 111 (178)
++++..+--++-.|+|++ +|. .... +++....+|..+++.+..-|+.|++.+. .||..-.. +=++.+.+
T Consensus 90 ~~n~~~~~lAL~~l~~i~-~~~---~~~~--l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~----~~~~~l~~ 159 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR-TPE---MAEP--LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED----ELIPKLKQ 159 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--SHH---HHHH--HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG----GHHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhc-ccc---hhhH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhh
Confidence 357788888899999988 333 2322 4788889999999999999999999996 45554222 01789999
Q ss_pred hhcCCchhHHHHHHHHHHHh-cCC
Q 030369 112 CLSSPVRNTVNHALGALYYL-CSM 134 (178)
Q Consensus 112 lLsS~~~evv~~AlttL~~L-~~~ 134 (178)
+|+++++.|+.+|+.+++.+ ..+
T Consensus 160 lL~d~~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred hccCCcchhHHHHHHHHHHHccCc
Confidence 99999999999999999999 544
No 45
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.24 Score=47.71 Aligned_cols=133 Identities=13% Similarity=0.177 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT 101 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~ 101 (178)
-...|+.=|+-+ .+|.+..++-=|.||.+|..+++.+.+.|.+|-+...|.+++- +..|.--+.++|.|-..|.-+.
T Consensus 346 iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfa 422 (791)
T KOG1222|consen 346 IVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFA 422 (791)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHH
Confidence 345677777766 6778888899999999999999999999999999999987653 5667888999999999999998
Q ss_pred hcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCCccccccc-----------------chHHHHHHHHhhhhcc
Q 030369 102 KSGGIPLIIECL-SSPVRNTVNHALGALYYLCSMSTKEEIL-----------------KPEVVDVIRRYAAAES 157 (178)
Q Consensus 102 ~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~~sr~~I~-----------------~p~ll~ll~~~~~~~~ 157 (178)
--..|+.++.-+ +-.+++|-+.-|....+|+-..-...+. .|-+++.++..++|+.
T Consensus 423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg 496 (791)
T KOG1222|consen 423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEG 496 (791)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccc
Confidence 888899887765 5556778888888888888442111111 2889999999999874
No 46
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.47 E-value=0.21 Score=53.03 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=97.0
Q ss_pred HHHHHHHhhhhcc-CcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhc--CCchhhHHhhhcCChhHHHHhh-
Q 030369 39 KEKIVANLANFAY-DPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNAS--VDPANAAIITKSGGIPLIIECL- 113 (178)
Q Consensus 39 keqvlanLaNfAy-DP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~--~D~~nk~~I~~~gGi~~li~lL- 113 (178)
|.=+.-.|-|+.| |--|+.+|-- =|.|+.+|..|.++.+.|+.--++-|-||+ +|.--|+.+.+-|.+.-|..|-
T Consensus 368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al 447 (2195)
T KOG2122|consen 368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACAL 447 (2195)
T ss_pred HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHH
Confidence 6667778889995 6788888876 499999999999999899999999999998 9999999999999999999994
Q ss_pred cCCchhHHHHHHHHHHHhcCC--cccccccc----hHHHHHHHHhh
Q 030369 114 SSPVRNTVNHALGALYYLCSM--STKEEILK----PEVVDVIRRYA 153 (178)
Q Consensus 114 sS~~~evv~~AlttL~~L~~~--~sr~~I~~----p~ll~ll~~~~ 153 (178)
.-.++.+++.-|.+||||..- +++.+|.. -.+|--|..|.
T Consensus 448 ~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 448 RNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE 493 (2195)
T ss_pred HhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc
Confidence 777789999999999999944 68999983 44444455555
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.38 E-value=1.5 Score=40.89 Aligned_cols=147 Identities=12% Similarity=0.181 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhc-----cChHHHHhhhcCC------------------
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQL-----NVLELFLDCITEP------------------ 75 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL-----~vidlfld~L~~~------------------ 75 (178)
-+|.+.+|.=.+.++..+..+-|+.-++=+- .||.=+..+.+. +....|+..|..+
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 6788888887788888888777777666555 445544444442 4455555555422
Q ss_pred -------------------------cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCC--chhHHHHHHHHH
Q 030369 76 -------------------------NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSP--VRNTVNHALGAL 128 (178)
Q Consensus 76 -------------------------n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~--~~evv~~AlttL 128 (178)
+...+.+|+.||.+|.--+..+..+.+.+|+++|+.+|+.. ..+..=+++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 23446778889999999999999999999999999999552 357777888888
Q ss_pred HHhcCC-cccccc----cchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 129 YYLCSM-STKEEI----LKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 129 ~~L~~~-~sr~~I----~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
|-|.=. ...... ..|.++++++.-.. .++.-+|-+-|-
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~K-----EKvvRv~l~~l~ 254 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTK-----EKVIRIVLAIFR 254 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhh-----HHHHHHHHHHHH
Confidence 887632 211111 14777777765544 355555554443
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.96 E-value=0.15 Score=32.91 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhh
Q 030369 37 ERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA 90 (178)
Q Consensus 37 e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL 90 (178)
..|+.++.+|++++--......-..-++++.++.+|..+++.+.+-|..+|-|+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467888999999885554444445568999999999999889999999999875
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.79 E-value=0.28 Score=39.89 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=76.9
Q ss_pred HHHHHh--hcC-ChHHHHHHHHHHhhhhc-cC--cccH----HHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-
Q 030369 25 ELVSQF--QNS-TDEERKEKIVANLANFA-YD--PYNY----TFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD- 93 (178)
Q Consensus 25 ~LV~ef--q~t-~~~e~keqvlanLaNfA-yD--P~N~----~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D- 93 (178)
.+++.| ..+ .+=+.|.+.+-.|-.+. ++ +.+. ..|| ++++.+..++++.+-.+...|..++..++.-
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555 333 45567777777777765 33 2222 3344 7889999999988889999998888888643
Q ss_pred -chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHH-HHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 94 -PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEV-VDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 94 -~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~l-l~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
.....++- .-+|.|++++++++..+...|..+|..++..-+ ..|.+ +..+.....+. |++++.-|.-+|.
T Consensus 85 ~~~~~~~~~--~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~ 156 (228)
T PF12348_consen 85 GSHFEPYAD--ILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSK--NPQVREECAEWLA 156 (228)
T ss_dssp GGGGHHHHH--HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S---HHHHHHHHHHHH
T ss_pred hHhHHHHHH--HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 22333322 236889999988888888888888888875422 12333 45554444433 5677777766666
Q ss_pred hhc
Q 030369 172 KHV 174 (178)
Q Consensus 172 ~~~ 174 (178)
..+
T Consensus 157 ~~l 159 (228)
T PF12348_consen 157 IIL 159 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 50
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.54 E-value=0.38 Score=39.42 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred hhhHHhhhcCChhHHHHhhcCCc------hhHHHHHHHHHHHhcCCc-ccccccchHHHHHHHHhhhhcccchhHHHhHH
Q 030369 95 ANAAIITKSGGIPLIIECLSSPV------RNTVNHALGALYYLCSMS-TKEEILKPEVVDVIRRYAAAESVNVSFSNLAK 167 (178)
Q Consensus 95 ~nk~~I~~~gGi~~li~lLsS~~------~evv~~AlttL~~L~~~~-sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~ 167 (178)
+++.+++..||++.|++.+.++. .++..++++++..|++-. ---++..+++++.+-.|=..+.....+--.|-
T Consensus 2 TFA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 2 TFAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred chHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 56778888999999999995543 488899999999999653 24577789999999888775554678888999
Q ss_pred HHHHhhccC
Q 030369 168 AFLDKHVTE 176 (178)
Q Consensus 168 ~fL~~~~~~ 176 (178)
+.||.-+..
T Consensus 82 aILEs~Vl~ 90 (160)
T PF11841_consen 82 AILESIVLN 90 (160)
T ss_pred HHHHHHHhC
Confidence 999987653
No 51
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.22 E-value=0.44 Score=42.85 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=57.3
Q ss_pred cChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCC
Q 030369 63 NVLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 63 ~vidlfld~L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~ 134 (178)
+-++-++|-|.+. ...+..-++.-||.-|.||.++.++.++|..+.+.+++ ..++.++.-.+..++||++..
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 4466777778754 45778889999999999999999999999999999999 444343666677788887754
No 52
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.74 E-value=0.17 Score=39.51 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=54.7
Q ss_pred HHHhhhhccCcccHHHhhhccChHHHHhhhcCC-cHHHHHHH---HHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCch
Q 030369 43 VANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFG---VGGICNASVDPANAAIITKSGGIPLIIECLSSPVR 118 (178)
Q Consensus 43 lanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfA---iggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~ 118 (178)
..|...| .-.||..||. ++++|+.+ |+..+--| +|-++-.. |..+..|-+.||=+.|++|++++|+
T Consensus 31 ~ENa~kf--~~~~~~llk~------L~~lL~~s~d~~~laVac~Dig~~vr~~--p~gr~ii~~lg~K~~vM~Lm~h~d~ 100 (119)
T PF11698_consen 31 RENADKF--EENNFELLKK------LIKLLDKSDDPTTLAVACHDIGEFVRHY--PNGRNIIEKLGAKERVMELMNHEDP 100 (119)
T ss_dssp HHHSGGG--SSGGGHHHHH------HHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSH
T ss_pred HHHHHHH--HHcccHHHHH------HHHHHccCCCcceeehhhcchHHHHHHC--hhHHHHHHhcChHHHHHHHhcCCCH
Confidence 4566666 5667777766 46677443 44444333 34444443 7778888777788899999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030369 119 NTVNHALGALYYLC 132 (178)
Q Consensus 119 evv~~AlttL~~L~ 132 (178)
+|...|+.|+.-++
T Consensus 101 eVr~eAL~avQklm 114 (119)
T PF11698_consen 101 EVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.55 E-value=0.71 Score=37.09 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=62.1
Q ss_pred hHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCCh-hHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--
Q 030369 65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGI-PLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL-- 141 (178)
Q Consensus 65 idlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi-~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~-- 141 (178)
++.+..+|..+++.+.+-|+-+|.+|... .+|--.|.+ ..+..||..++++|...|...+..+........|.
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~ 102 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILE----DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNN 102 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 66788899999999999999999999643 444334555 88899999999999999999988877553223332
Q ss_pred chHHHHHHHHh
Q 030369 142 KPEVVDVIRRY 152 (178)
Q Consensus 142 ~p~ll~ll~~~ 152 (178)
.|.++--+..+
T Consensus 103 ~~e~i~~l~~~ 113 (178)
T PF12717_consen 103 FPELISSLNNC 113 (178)
T ss_pred HHHHHHHHhCc
Confidence 35555555544
No 54
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.30 E-value=0.5 Score=37.66 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=63.2
Q ss_pred HHHhhhhccCcccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc-CCchh
Q 030369 43 VANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS-SPVRN 119 (178)
Q Consensus 43 lanLaNfAyDP~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs-S~~~e 119 (178)
++.|.==..|..|.-++.+ |+++.+++..+ .++..+..-+.=.|.--|.|...+.+|.++ |+++|.+.++ ++++.
T Consensus 67 l~~lfp~~~dv~~~l~~~e-g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 67 LTALFPGPPDVGSELFLSE-GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDS 144 (157)
T ss_dssp HHHHCTTTHHHHHHHCCTT-THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH
T ss_pred HHHHhCCCHHHHHHHHhhh-hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchH
Confidence 3333333466666666666 89999999999 678888888888888889999999999986 8999999994 55444
Q ss_pred -HHHHHHHHHH
Q 030369 120 -TVNHALGALY 129 (178)
Q Consensus 120 -vv~~AlttL~ 129 (178)
+...|...|.
T Consensus 145 ~ir~~A~v~L~ 155 (157)
T PF11701_consen 145 EIRVLAAVGLC 155 (157)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 5666666554
No 55
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.29 E-value=8.1 Score=33.40 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~ 98 (178)
.+.++.||-.-=.+++.+.|+..+-.|.=|+ .|+..- ..-+++|+.+++.+++.+..-|+.+|+-+..-..-..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3788888877777888899999999999999 887332 2447889999988899999999999999875433221
Q ss_pred HhhhcC-----C----hhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc-hHHHHHHH-H-hhhhcccchhHHHhH
Q 030369 99 IITKSG-----G----IPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK-PEVVDVIR-R-YAAAESVNVSFSNLA 166 (178)
Q Consensus 99 ~I~~~g-----G----i~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~-p~ll~ll~-~-~~~~~~~~~~~~nla 166 (178)
.-...+ + ++.+.+.|.+.++++..-|++.+.-|+-. ..+.. |.++.-|- . |......|.+++-.=
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~---~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS---GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 111111 1 24556667777889999999998876633 22223 55555443 3 333333457888888
Q ss_pred HHHHHhhccCC
Q 030369 167 KAFLDKHVTEN 177 (178)
Q Consensus 167 ~~fL~~~~~~~ 177 (178)
..|+.-||..+
T Consensus 177 ~~Ffp~y~~s~ 187 (298)
T PF12719_consen 177 SVFFPVYASSS 187 (298)
T ss_pred HHHHHHHHcCC
Confidence 88888888653
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=2.2 Score=38.87 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=93.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHHHhhcCC-chhhHH
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVD-PANAAI 99 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggLcNL~~D-~~nk~~ 99 (178)
+.-|+. |=++++.+.|+.++-=++-.+ -+|.=...+-+.+.+..++..|+.+++ ...--|.++||++.-. +.-...
T Consensus 126 l~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 344566 777889999999888888888 559999999999999999999997644 4558899999999854 777888
Q ss_pred hhhcCChhHHHHhhcCC--chhHHHHHHHHHHHhcCC-cccccccc
Q 030369 100 ITKSGGIPLIIECLSSP--VRNTVNHALGALYYLCSM-STKEEILK 142 (178)
Q Consensus 100 I~~~gGi~~li~lLsS~--~~evv~~AlttL~~L~~~-~sr~~I~~ 142 (178)
++.-+|..-|+.+|.++ +.-.+.-++..+-+|+.. -+..+|.+
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88888999999999885 455566677777777755 35555554
No 57
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.05 E-value=0.63 Score=29.96 Aligned_cols=53 Identities=11% Similarity=-0.060 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHH
Q 030369 78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYY 130 (178)
Q Consensus 78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~ 130 (178)
.+.+-|+-+|.+++--......-.....++.++.+|.+++++|-.+|..+|-+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46677888888876443333333444568999999988888888888877754
No 58
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=91.04 E-value=0.5 Score=35.93 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=43.7
Q ss_pred HHHHHhhcCC-chhhHHhhhcCChhHHHHhh--cCCchhHHHHHHHHHHHhcCC
Q 030369 84 VGGICNASVD-PANAAIITKSGGIPLIIECL--SSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 84 iggLcNL~~D-~~nk~~I~~~gGi~~li~lL--sS~~~evv~~AlttL~~L~~~ 134 (178)
+--|.|||-+ +.++.+|.+.||||+|.+|= ...+|=+...|+-++=+|+..
T Consensus 7 vrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~ 60 (102)
T PF09759_consen 7 VRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG 60 (102)
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence 4567888855 99999999999999998884 666799999999999999954
No 59
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.77 E-value=0.57 Score=45.09 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-
Q 030369 16 GTPRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD- 93 (178)
Q Consensus 16 g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D- 93 (178)
+-..-+|..-|.. ...+..+|.=+--+.+-|. +=|. |. =.+|+..+|+..+++..+.-.||-+|-.+|.|
T Consensus 19 ~~~~~~y~~il~~---~kg~~k~K~Laaq~I~kffk~FP~----l~-~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~ 90 (556)
T PF05918_consen 19 SQHEEDYKEILDG---VKGSPKEKRLAAQFIPKFFKHFPD----LQ-EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN 90 (556)
T ss_dssp GGGHHHHHHHHHG---GGS-HHHHHHHHHHHHHHHCC-GG----GH-HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred ccCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHhhChh----hH-HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH
Confidence 4445566655543 2235556665556677776 3353 22 27899999999999999999999999999988
Q ss_pred chhhHHhhhcCChhHHHHhhcCCch---hHHHHHHHHHHH
Q 030369 94 PANAAIITKSGGIPLIIECLSSPVR---NTVNHALGALYY 130 (178)
Q Consensus 94 ~~nk~~I~~~gGi~~li~lLsS~~~---evv~~AlttL~~ 130 (178)
|..-.-| +..|++||.+.++ ++|.+|+..|+-
T Consensus 91 ~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 91 PEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp -T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 5555555 5689999977653 566777755554
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.41 E-value=0.62 Score=34.69 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=49.3
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhc--CChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKS--GGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~--gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
.++++.+.|++.++.+++.+|.=+|-|++ ...+..++.+ .=.+-+.++.+.++++| .++.+.|-.|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~--k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNIS--KVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence 57999999999999999999999999997 3334444432 11245567778887776 55657776665
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.91 E-value=0.6 Score=34.77 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=48.5
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHHhhhhcccchhHHHhHHHH
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRRYAAAESVNVSFSNLAKAF 169 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~~~~~~~~~~~~~nla~~f 169 (178)
+|++..|+++++..|=-.|.++||+++.. .+.++. .+.+.+.|-+... +.++++++-|+.+
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~kl~~--D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCKLSA--DPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc--CCchhHHHHHHHH
Confidence 79999999999999999999999999733 345554 5888888866555 6678898888543
No 62
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.82 E-value=3 Score=32.81 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=68.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhhc-cCcccH--HHhhhccChHHHHhhhcC---------CcHHHHHHHHHHHHhhcC
Q 030369 25 ELVSQFQNSTDEERKEKIVANLANFA-YDPYNY--TFLRQLNVLELFLDCITE---------PNEKLVEFGVGGICNASV 92 (178)
Q Consensus 25 ~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~--~~LrqL~vidlfld~L~~---------~n~~l~EfAiggLcNL~~ 92 (178)
.+|+.+++.+... +++..|.=.= ..|..| .++ ..|-++.+++.|.. .+..+....+.||=.++.
T Consensus 70 ~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 70 WYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 4444444443322 4455554333 456666 444 56888888888762 245677778889888887
Q ss_pred CchhhHHhhh-cCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 93 DPANAAIITK-SGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 93 D~~nk~~I~~-~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
...-...++. .+++..|+.||.|++..+..-++..|-.+|
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7665666655 778899999999999999999999887765
No 63
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=2.4 Score=41.19 Aligned_cols=112 Identities=14% Similarity=0.235 Sum_probs=96.1
Q ss_pred HHHHHH----HhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc
Q 030369 39 KEKIVA----NLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS 114 (178)
Q Consensus 39 keqvla----nLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs 114 (178)
|||.++ =|.|.|-|-.=-..+|.=+++-+++-+|+.+|-.|.-.-+.-|--||.=-.||....+.|-++.+.++.-
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 556554 3789999999999999999999999999999988888888999999988899999999999999999998
Q ss_pred CCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHH
Q 030369 115 SPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIR 150 (178)
Q Consensus 115 S~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~ 150 (178)
+.++|.++-.+..+++|.=+ ..|.... -|-+..++.
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~ 396 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD 396 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC
Confidence 88899999999999999966 4565555 366666664
No 64
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.53 E-value=0.52 Score=27.57 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=24.3
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhc
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNAS 91 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~ 91 (178)
++|.|+.+|+.+++.+.+.|+-||-+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998775
No 65
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=0.33 Score=47.14 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=83.4
Q ss_pred HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchh-hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc--
Q 030369 56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPAN-AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC-- 132 (178)
Q Consensus 56 ~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~n-k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~-- 132 (178)
+.-|...+|.+++++.|+.++-.+.--+++.+||..+...| ++.+++.|=|..|+++++|.|.....+++=.++.|+
T Consensus 424 RTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred HhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 34556689999999999988766666688999999999666 556677878899999999888877777776665444
Q ss_pred -CCcccccccc-------------------hHHHHHHHHhhhhcccchhHH----------HhHHHHHHhhccCC
Q 030369 133 -SMSTKEEILK-------------------PEVVDVIRRYAAAESVNVSFS----------NLAKAFLDKHVTEN 177 (178)
Q Consensus 133 -~~~sr~~I~~-------------------p~ll~ll~~~~~~~~~~~~~~----------nla~~fL~~~~~~~ 177 (178)
+..-+-+..+ .-++++++.|-..+..|.+.. =+++.|++++-..|
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n 578 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN 578 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC
Confidence 3321112210 456788888877433232221 27778887775443
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.10 E-value=7.2 Score=31.62 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=68.5
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcc--cccc
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEI 140 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~s--r~~I 140 (178)
.+++.++..+...+..+.+-|..+|..++-.-.....+. ++.+....++.++.+-..++..+..++.... ...+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 467888999999999999999999998876544222221 3456666788889999999998888886632 3333
Q ss_pred c----chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 141 L----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 141 ~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
. .+.+++.+..+-. +.++.+++.|..-+..+
T Consensus 170 ~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLS--DADPEVREAARECLWAL 204 (228)
T ss_dssp --HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHH
Confidence 3 2667888877766 55788888887766554
No 67
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=87.71 E-value=2 Score=41.06 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=68.8
Q ss_pred cCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcC----C---cHHHHHHHHHHHHhhcCC-chhhHHhhh
Q 030369 32 NSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITE----P---NEKLVEFGVGGICNASVD-PANAAIITK 102 (178)
Q Consensus 32 ~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~----~---n~~l~EfAiggLcNL~~D-~~nk~~I~~ 102 (178)
+|++.|.-+|+--.|+|-.|| -.|+..+-++|--...+|.|.+ + ++....-+-|-|.|.+.| ..-+.+..+
T Consensus 97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~ 176 (604)
T KOG4500|consen 97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD 176 (604)
T ss_pred CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence 446789999999999999999 7899999999997778888864 2 567777788999999999 667888999
Q ss_pred cCChhHHHHhh
Q 030369 103 SGGIPLIIECL 113 (178)
Q Consensus 103 ~gGi~~li~lL 113 (178)
.|-++-+...+
T Consensus 177 ~gVl~tL~~~~ 187 (604)
T KOG4500|consen 177 AGVLNTLAITY 187 (604)
T ss_pred cccHHHHHHHh
Confidence 98888665555
No 68
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.98 E-value=2.1 Score=35.73 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=50.2
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
..++.|.|-|.|-+.=-.-+|.-|+--|..- ...|..=.=-.=|.+|.+-|.+.+++|...++.+|-.|+..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3589999999987666666777777766433 22221111111255667889999999999999999999755
No 69
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=86.15 E-value=1.6 Score=33.26 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc-c
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL-K 142 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~-~ 142 (178)
+|++++..|..+++.++..|+--|+..|.|+..-+.++.. .|-...|... ..+-.+.+|.++....-.. .
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~---~p~l~~L~~~------g~~Ll~~~lS~~~Gf~~L~~~ 79 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL---RPSLDHLGDI------GSPLLLRFLSTPSGFRYLNEI 79 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc---CcHHHHHHHc------CHHHHHHHHcchHHHHHhcch
Confidence 4789999999999999999999999999999777776542 2222333221 1112223343432211111 1
Q ss_pred hHHHHHHHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369 143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE 176 (178)
Q Consensus 143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~ 176 (178)
--|-+-|..|.... |.+-..+...+|.+..+.
T Consensus 80 ~~v~~El~~W~~~~--N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 80 GYVEKELDKWFESF--NKEYVKLVEEFLSEALTN 111 (115)
T ss_pred hHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHhc
Confidence 23556677888755 788888888888876553
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=86.00 E-value=1.9 Score=42.78 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=42.4
Q ss_pred HhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 69 LDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 69 ld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
..+|...++-+..-|+.|+..+- .||. .+.+.|=++.|.++|+++++.|+.||+.+|+.+...
T Consensus 146 kk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 146 RRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 34444556666666666666663 3342 233344467888889999999999999999888643
No 71
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.93 E-value=1.5 Score=40.03 Aligned_cols=71 Identities=17% Similarity=0.377 Sum_probs=57.1
Q ss_pred hhhhcc-CcccHHHhhhccChHHHHhhhc-CC---cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCC
Q 030369 46 LANFAY-DPYNYTFLRQLNVLELFLDCIT-EP---NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSP 116 (178)
Q Consensus 46 LaNfAy-DP~N~~~LrqL~vidlfld~L~-~~---n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~ 116 (178)
+.+|-+ ||-.+..|.+.|+++.|++.+. .+ +..++----.+|.=+|+...-.+.+.+.+-++.+.+++.||
T Consensus 133 vs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 133 VSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 456664 5999999999999999999999 33 34444444456666789999999999999999999998877
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=4.7 Score=40.27 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHH----hhhcc-ChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTF----LRQLN-VLELFLDCITEPNEKLVEFGVGGICNASV 92 (178)
Q Consensus 18 ~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~----LrqL~-vidlfld~L~~~n~~l~EfAiggLcNL~~ 92 (178)
++.|-|+.|++-.-.+ +.-..|-++.+|---.=|.--.-- =|=++ .||-|+.-.+.+++++.-+|++|+--...
T Consensus 125 ~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred cchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 4688899998866544 322233333333222211100000 02222 47889999999999999999999987776
Q ss_pred CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
.-+-.-+..=-.=++.+..+-..++++|-++.-.+|.+|..- ..|-.=+-+.+++.|...-+ +++..++==|+-|.-
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwl 281 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWL 281 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHH
Confidence 655444442111234455555888999999999999999844 23344446889999988877 445668888888887
Q ss_pred hhcc
Q 030369 172 KHVT 175 (178)
Q Consensus 172 ~~~~ 175 (178)
-++.
T Consensus 282 a~ae 285 (885)
T KOG2023|consen 282 ALAE 285 (885)
T ss_pred HHhc
Confidence 6654
No 73
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.26 E-value=3.5 Score=37.50 Aligned_cols=103 Identities=16% Similarity=0.357 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHhhhhc-c--CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhH
Q 030369 33 STDEERKEKIVANLANFA-Y--DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPL 108 (178)
Q Consensus 33 t~~~e~keqvlanLaNfA-y--DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~ 108 (178)
.+++.-|||++.=.-=|. + +|.. ---+|+-.++.+...+++.+..-++.-||.++ .||. .+.+.||+..
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~----~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~ 151 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKE----IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRV 151 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCccc----CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHH
Confidence 456777888876543333 3 2221 13467778888888889999999999999997 4564 5678899999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHhcCC-cccccccc
Q 030369 109 IIECLSSPVRNTVNHALGALYYLCSM-STKEEILK 142 (178)
Q Consensus 109 li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~ 142 (178)
|++.+.++.-++....+.++.++++. .+|.-++.
T Consensus 152 L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 152 LLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 99998765556778888888888866 67775553
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=83.84 E-value=2.2 Score=42.53 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcc-----------------c---HHHhhhc----------c
Q 030369 15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPY-----------------N---YTFLRQL----------N 63 (178)
Q Consensus 15 ~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~-----------------N---~~~LrqL----------~ 63 (178)
.|-+=..|.-+.+-.-. |.+.|.|.=+=-=|-+|| ++|. = ...||-+ .
T Consensus 49 ~G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~ 127 (757)
T COG5096 49 LGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGN 127 (757)
T ss_pred cCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHH
Confidence 34455666666666666 778888776666666666 6661 0 0112221 2
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
++++..++|+.+++-+..-|+.|+.++= +| +..+.+.|-+..+..++++++|.++.+|+.+|+-+...
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 3455556666667777777777777772 43 34444555666777777777888888888888776643
No 75
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.39 E-value=1.9 Score=25.16 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.7
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+|.+.+++++|+++|-..|+.+|-.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999998887654
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.04 E-value=3.4 Score=37.52 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-c-----ccHHHhh---h----ccChHHHHhhhcCCcHHHHHHHHHHH
Q 030369 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYD-P-----YNYTFLR---Q----LNVLELFLDCITEPNEKLVEFGVGGI 87 (178)
Q Consensus 21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P-----~N~~~Lr---q----L~vidlfld~L~~~n~~l~EfAiggL 87 (178)
+|+..|++-+-+ .+....+...+.=+.-| | .|+.-.| + -.+++.+++...+.+....+.-.-||
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 555566654443 34444444444444444 1 2222222 2 24566666666665544555556677
Q ss_pred HhhcCCchhhHHhhhcC-ChhHHHHhhcCCchhHHHHHHHHHHHhcCCc
Q 030369 88 CNASVDPANAAIITKSG-GIPLIIECLSSPVRNTVNHALGALYYLCSMS 135 (178)
Q Consensus 88 cNL~~D~~nk~~I~~~g-Gi~~li~lLsS~~~evv~~AlttL~~L~~~~ 135 (178)
+++.-.-......-+-+ =+|++++.|+.+++++..+++.||.-++.+.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77755422333333322 3588999999999999999999999998663
No 77
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=81.97 E-value=9 Score=31.91 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHhhc---C-ChHHHHHH-HHHHhhhhccCcccHHHhhhcc--C--hHHHHhhhcCCcHHHHHHHHHH
Q 030369 16 GTPRLQYLQELVSQFQN---S-TDEERKEK-IVANLANFAYDPYNYTFLRQLN--V--LELFLDCITEPNEKLVEFGVGG 86 (178)
Q Consensus 16 g~~R~~ylq~LV~efq~---t-~~~e~keq-vlanLaNfAyDP~N~~~LrqL~--v--idlfld~L~~~n~~l~EfAigg 86 (178)
...+-.||-.||+.|-. . .+..+.-+ +..=|+|.+.=|.=+.++..-+ . |.-++-.++..+.....=++|.
T Consensus 47 ~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~ 126 (192)
T PF04063_consen 47 VSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGT 126 (192)
T ss_pred cchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHH
Confidence 34466899999999988 1 23344433 4444788898898888887653 2 5556666666688888888899
Q ss_pred HHhhcCCchhhHHhhhcCChhHHHHh
Q 030369 87 ICNASVDPANAAIITKSGGIPLIIEC 112 (178)
Q Consensus 87 LcNL~~D~~nk~~I~~~gGi~~li~l 112 (178)
|=|||-|...-..++..+++..+-.+
T Consensus 127 IrNccFd~~~H~~LL~~~~~~iLp~L 152 (192)
T PF04063_consen 127 IRNCCFDTDSHEWLLSDDEVDILPYL 152 (192)
T ss_pred HHHhhccHhHHHHhcCchhhhhHHHH
Confidence 99999999988888875545444433
No 78
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=81.03 E-value=8.8 Score=33.65 Aligned_cols=120 Identities=14% Similarity=0.257 Sum_probs=75.9
Q ss_pred hhccCcccHHHhhhccChHHHHhhhc------CCcHHHHHH---HHHHHHhhcCCchhhHHhhhcCChhHHHHhh-cCCc
Q 030369 48 NFAYDPYNYTFLRQLNVLELFLDCIT------EPNEKLVEF---GVGGICNASVDPANAAIITKSGGIPLIIECL-SSPV 117 (178)
Q Consensus 48 NfAyDP~N~~~LrqL~vidlfld~L~------~~n~~l~Ef---AiggLcNL~~D~~nk~~I~~~gGi~~li~lL-sS~~ 117 (178)
+|-|+.. .|=+..++.+++... +.++.++-. -+-|+|= +.|..|..+-+..+++.++.+| .+..
T Consensus 74 ~Fe~Nl~----~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~L--LHp~Sr~lF~r~~~m~lll~LL~~~~~ 147 (257)
T PF08045_consen 74 GFEWNLA----SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCL--LHPPSRKLFHREQNMELLLDLLSPSNP 147 (257)
T ss_pred Hhhcchh----hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHH--cCchHHHHHhhhhhHHHHHHHhccCCC
Confidence 4555443 333444555555544 124444444 3445543 4689999999999999999999 4455
Q ss_pred hhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhccCC
Q 030369 118 RNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177 (178)
Q Consensus 118 ~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~~ 177 (178)
+.++..++.||.-++-+ .+-..+. ...|..++++-+. ++.++=++--||-=|+.+.
T Consensus 148 ~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~----~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 148 PAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST----DRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred chHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc----cHHHhHHHHHHHHHHHccc
Confidence 89999999999877733 3333443 2566666655444 3456666777887776653
No 79
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=80.73 E-value=20 Score=36.10 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=52.5
Q ss_pred ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 62 LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 62 L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+=++..|..-|+.+|+.++-||+--++-+ -++.--.++ +++|.+|+.++++.|=+.|+-++..+.
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~~el~~~~-----~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLL-RVKELLGNI-----IDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhc-ChHHHHHHH-----HHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 45778899999999999999999988866 334444444 689999999999999888888876555
No 80
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=79.10 E-value=2.2 Score=32.44 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=28.5
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCCc
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSMS 135 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~~ 135 (178)
||+.+++-|.+|+++|+..|+..|+-.|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 7899999999999999999999999998774
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=79.04 E-value=39 Score=32.34 Aligned_cols=83 Identities=30% Similarity=0.466 Sum_probs=63.6
Q ss_pred HHHhhhc-C-------CcHHHHHHHHHHHHhhcCCchhh--HHhhhcCChhHHHHhhcCCch-hHHHHHHHHHHHhcCC-
Q 030369 67 LFLDCIT-E-------PNEKLVEFGVGGICNASVDPANA--AIITKSGGIPLIIECLSSPVR-NTVNHALGALYYLCSM- 134 (178)
Q Consensus 67 lfld~L~-~-------~n~~l~EfAiggLcNL~~D~~nk--~~I~~~gGi~~li~lLsS~~~-evv~~AlttL~~L~~~- 134 (178)
-|++-|- + +....+.-|+.=|.-+|.||..+ .++.. -||.++++++++.. +++..|+.+|+.++..
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~ 130 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSP 130 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc
Confidence 5666653 2 24678888999999999998885 55554 49999999977766 9999999999999955
Q ss_pred ccccccc----chHHHHHHHH
Q 030369 135 STKEEIL----KPEVVDVIRR 151 (178)
Q Consensus 135 ~sr~~I~----~p~ll~ll~~ 151 (178)
+.+..+. .|.+.+.+..
T Consensus 131 ~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 131 EGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HhHHHHHhcCCHHHHHHHHHh
Confidence 4666666 3777777655
No 82
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=78.85 E-value=6.8 Score=36.33 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=57.1
Q ss_pred hccCcccHHHhhhccChHHHHhh----------hcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCC-
Q 030369 49 FAYDPYNYTFLRQLNVLELFLDC----------ITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSP- 116 (178)
Q Consensus 49 fAyDP~N~~~LrqL~vidlfld~----------L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~- 116 (178)
+..||.+..-|-.=+.+..++.. ...+++....-|.-||||+. ..|..++.+.+.|+.+.+++.|+..
T Consensus 8 LsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~ 87 (446)
T PF10165_consen 8 LSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYS 87 (446)
T ss_pred HccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccc
Confidence 44555555555554444444433 23447888899999999997 5688888889999999999999655
Q ss_pred ----chhHHHHHHHHHHHhcCC
Q 030369 117 ----VRNTVNHALGALYYLCSM 134 (178)
Q Consensus 117 ----~~evv~~AlttL~~L~~~ 134 (178)
+.|+.--..- |.||++.
T Consensus 88 ~~~~~~d~~Fl~~R-LLFLlTa 108 (446)
T PF10165_consen 88 DSSQPSDVEFLDSR-LLFLLTA 108 (446)
T ss_pred ccCCChhHHHHHHH-HHHHHhc
Confidence 4566544444 4444543
No 83
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.59 E-value=4.4 Score=41.30 Aligned_cols=91 Identities=15% Similarity=0.278 Sum_probs=71.6
Q ss_pred ChHHHHhhhcCC-cHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHH-hhcCCchhHHHHHHHHHHHhcCCcccccc
Q 030369 64 VLELFLDCITEP-NEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE-CLSSPVRNTVNHALGALYYLCSMSTKEEI 140 (178)
Q Consensus 64 vidlfld~L~~~-n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~-lLsS~~~evv~~AlttL~~L~~~~sr~~I 140 (178)
+++.++.+|..+ |..+.-.|.=||.||| +=|..-..+.+.+.||.+.+ |+.-..-|+...++++|=++.....++-+
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL 291 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAIL 291 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHH
Confidence 577888888865 8999999999999999 56999999999999997754 55777789999999999999877766655
Q ss_pred cc---hHHHHHHHHhhh
Q 030369 141 LK---PEVVDVIRRYAA 154 (178)
Q Consensus 141 ~~---p~ll~ll~~~~~ 154 (178)
.+ -.+|..+.=|+-
T Consensus 292 ~AG~l~a~LsylDFFSi 308 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDFFSI 308 (1051)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 55 444444444444
No 84
>PTZ00429 beta-adaptin; Provisional
Probab=78.24 E-value=77 Score=31.76 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=68.3
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK 142 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~ 142 (178)
=++..|.--|..+|+.++-.|+-.+|++.. |..-+++ +++|.+||+++++-|-+.|+-+++.+..-. ...+..
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~ 177 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQ 177 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccc
Confidence 456667777777788888888888888755 3344444 567888888888888888888888876421 122334
Q ss_pred hHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
..+++.|.+.=. +.|+-+.--|-+.|.+.+
T Consensus 178 ~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 178 QDFKKDLVELLN--DNNPVVASNAAAIVCEVN 207 (746)
T ss_pred cchHHHHHHHhc--CCCccHHHHHHHHHHHHH
Confidence 567788877543 446666555555554443
No 85
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.18 E-value=45 Score=33.56 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=16.0
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHh
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYL 131 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L 131 (178)
++.|+.+|++++++|-..|+.+|-.+
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 45666666666666666666666554
No 86
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=78.03 E-value=10 Score=37.74 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=58.1
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhh--cCC-chhhHHhhhcCChhHHHHh-hcCCchhHHHHHHHHHHHhcCCcccc
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNA--SVD-PANAAIITKSGGIPLIIEC-LSSPVRNTVNHALGALYYLCSMSTKE 138 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL--~~D-~~nk~~I~~~gGi~~li~l-LsS~~~evv~~AlttL~~L~~~~sr~ 138 (178)
+|+|+++.++..++..++|-++-++-+. .+| +.-|+.| +|.|.++ +...+..++.+++.|+=-+++.-.+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~i-----lP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAI-----LPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHH-----HHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999999999999999998888 377 4444555 6666655 34556888899998887777443344
Q ss_pred ccc--chHHHHHH
Q 030369 139 EIL--KPEVVDVI 149 (178)
Q Consensus 139 ~I~--~p~ll~ll 149 (178)
.+. .+|+++|+
T Consensus 464 ~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 464 AVLDELLPILKCI 476 (700)
T ss_pred HhHHHHHHHHHHh
Confidence 444 36666665
No 87
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.98 E-value=49 Score=33.29 Aligned_cols=26 Identities=23% Similarity=0.034 Sum_probs=13.1
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHh
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYL 131 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L 131 (178)
++.|..++.+++++|-..|+..|-.+
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 34455555555555555555555444
No 88
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.01 E-value=22 Score=31.49 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCchhhHHhhhcCCh-hHHHHhhcCCchhHHHHHHHHHH-HhcCCc-----ccccccchHHHHHHHH
Q 030369 79 LVEFGVGGICNASVDPANAAIITKSGGI-PLIIECLSSPVRNTVNHALGALY-YLCSMS-----TKEEILKPEVVDVIRR 151 (178)
Q Consensus 79 l~EfAiggLcNL~~D~~nk~~I~~~gGi-~~li~lLsS~~~evv~~AlttL~-~L~~~~-----sr~~I~~p~ll~ll~~ 151 (178)
.+.|++.-|-+ .||..+..|++.+++ ..+.+=|....+++|..-+++|. +.+.+. .+..+-.+..+..|..
T Consensus 134 fI~F~Lsfl~~--~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 134 FIRFWLSFLSS--GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHcc--CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 55565555544 489999999988777 44455566666999999999998 455552 2333445777777766
Q ss_pred hhhhcc--cchhHHHhHHHHHHhhccC
Q 030369 152 YAAAES--VNVSFSNLAKAFLDKHVTE 176 (178)
Q Consensus 152 ~~~~~~--~~~~~~nla~~fL~~~~~~ 176 (178)
.-.... .+..++++|.-||...|+.
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcC
Confidence 544332 1338999999999999964
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.82 E-value=22 Score=32.64 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=90.0
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh--ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcC
Q 030369 27 VSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ--LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSG 104 (178)
Q Consensus 27 V~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq--L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~g 104 (178)
|.+|=-+.+...|...+-+|.+|.--| ...+.. -..|......+.+..+ .+=|+.+|.|++.|+.-++.++.-
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~- 82 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD- 82 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-
Confidence 345777778889999999999988542 222222 2445566677777666 888999999999999988888765
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc----c----hHHHHHHHHhhhhcccc--hhHHHhHHHHH
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL----K----PEVVDVIRRYAAAESVN--VSFSNLAKAFL 170 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~----~----p~ll~ll~~~~~~~~~~--~~~~nla~~fL 170 (178)
=+..++..+..|......-....|.||..+.+-..+. . .-+++|.+.+-.++. | ..|.=+|.+|-
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-NAYAEFHYLAPVFA 157 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc-ccccchhHHHHHHH
Confidence 4455666666664444455556677777653211111 1 457777777666553 4 45666777664
No 90
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.26 E-value=28 Score=30.02 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=69.4
Q ss_pred HhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC---c---cc----
Q 030369 69 LDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM---S---TK---- 137 (178)
Q Consensus 69 ld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~---~---sr---- 137 (178)
+-.+..+++.+++.|+-||.=+| .|+..+..- ++.+.++++..++++..-|+.++.-++.- . +.
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 36677788999999998887776 677665554 67889999776899999999999866621 1 11
Q ss_pred ccccchHHHHHHHHhhhhcccchhHH-----HhHHHHHHhhcc
Q 030369 138 EEILKPEVVDVIRRYAAAESVNVSFS-----NLAKAFLDKHVT 175 (178)
Q Consensus 138 ~~I~~p~ll~ll~~~~~~~~~~~~~~-----nla~~fL~~~~~ 175 (178)
.......+++.+..+-.++ ++.+. -+|+.||-+...
T Consensus 108 ~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred ccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCC
Confidence 1244578888888887755 44333 456666655443
No 91
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=74.92 E-value=2.8 Score=32.37 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcC--ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369 21 QYLQELVSQFQNS--TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (178)
Q Consensus 21 ~ylq~LV~efq~t--~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~ 98 (178)
..++.+|-.|... .+.|.|-+ |+-||.-| +| ++.=..-+|-.+-.|+..|..=.
T Consensus 26 ~~lkklvl~fek~i~kN~e~R~K-------~~ddP~KF------------md-----SE~dLd~~Ik~l~~La~~P~LYp 81 (108)
T PF08216_consen 26 AWLKKLVLSFEKRINKNQEMRIK-------YPDDPEKF------------MD-----SEVDLDEEIKKLSVLATAPELYP 81 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh-------CCCCHHHH------------HH-----hHHHHHHHHHHHHHccCChhHHH
Confidence 3555666666543 45555543 66666543 22 22223345666778888999988
Q ss_pred HhhhcCChhHHHHhhcCCchhHHHHH
Q 030369 99 IITKSGGIPLIIECLSSPVRNTVNHA 124 (178)
Q Consensus 99 ~I~~~gGi~~li~lLsS~~~evv~~A 124 (178)
.+.+.|+++.|++||+.++.|++..+
T Consensus 82 ~lv~l~~v~sL~~LL~HeN~DIai~v 107 (108)
T PF08216_consen 82 ELVELGAVPSLLGLLSHENTDIAIDV 107 (108)
T ss_pred HHHHcCCHHHHHHHHCCCCcceehcc
Confidence 99999999999999999999987654
No 92
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.70 E-value=16 Score=28.34 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred HHHHHhhcC-CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC---cccccccchHHHHHHHHhhhhcccc
Q 030369 84 VGGICNASV-DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM---STKEEILKPEVVDVIRRYAAAESVN 159 (178)
Q Consensus 84 iggLcNL~~-D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr~~I~~p~ll~ll~~~~~~~~~~ 159 (178)
+..||.+.- ++...... +..|.+-|.++++.++..||+.|=.|+.- .-+.+|.+..+++.|.+.-.++...
T Consensus 26 ~l~icD~i~~~~~~~kea-----~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~ 100 (140)
T PF00790_consen 26 ILEICDLINSSPDGAKEA-----ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTD 100 (140)
T ss_dssp HHHHHHHHHTSTTHHHHH-----HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHcCCccHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCC
Confidence 345676642 23333333 56788888889999999999888777622 3567777888888888754433222
Q ss_pred hh--HHHhHHHHHHh
Q 030369 160 VS--FSNLAKAFLDK 172 (178)
Q Consensus 160 ~~--~~nla~~fL~~ 172 (178)
+. +++.+-..+..
T Consensus 101 ~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 101 PETPVKEKILELLQE 115 (140)
T ss_dssp HHSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 32 56655555543
No 93
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.07 E-value=12 Score=38.26 Aligned_cols=106 Identities=11% Similarity=0.094 Sum_probs=82.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--chhhHHhhh
Q 030369 25 ELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAIITK 102 (178)
Q Consensus 25 ~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~nk~~I~~ 102 (178)
-|+...++-.-.|.-||+|-+|-=...+- + ..+-+.|.|-..|..|+-=.-..+.-|++-..|+|.. +..-.+|.|
T Consensus 258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~-~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e 335 (1051)
T KOG0168|consen 258 VLLEKLLTIEYIDVAEQSLQALEKISRRH-P-KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME 335 (1051)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhhc-c-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34455555667788999999998777652 1 3456778887777777655677889999999999965 666677776
Q ss_pred cCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 103 SGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 103 ~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
. +|+|..+|+..+...+.++.-++++++..
T Consensus 336 a--lPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 336 A--LPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred H--HHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 4 99999999999999999999999888743
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.08 E-value=31 Score=34.65 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT 101 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~ 101 (178)
|.-.|=|||+ |.|+..++.|--.|-.-.-+ .-.++|.++|++..+.+.+.+-||-.|--++.--+ +
T Consensus 378 ~VhGlEDEf~-----EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i 443 (823)
T KOG2259|consen 378 LVHGLEDEFY-----EVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----I 443 (823)
T ss_pred eeeechHHHH-----HHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----e
Confidence 5556778887 56888899888888542222 23678999999999999999999988887765522 2
Q ss_pred hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccc----------------cchHHHHHHHHhhhhcccchhHHHh
Q 030369 102 KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEI----------------LKPEVVDVIRRYAAAESVNVSFSNL 165 (178)
Q Consensus 102 ~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I----------------~~p~ll~ll~~~~~~~~~~~~~~nl 165 (178)
+...++.+..+|....+++-...-..|- +++-+..+-| -.|.++.||.++.+.+. .-+--.
T Consensus 444 ~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~--~lv~s~ 520 (823)
T KOG2259|consen 444 REEQLRQILESLEDRSVDVREALRELLK-NARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHR--RLVLSN 520 (823)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccCh--hhHHHH
Confidence 3344778888885555555333333222 2211111111 13789999999998552 356677
Q ss_pred HHHHHHhhcc
Q 030369 166 AKAFLDKHVT 175 (178)
Q Consensus 166 a~~fL~~~~~ 175 (178)
+.-||+.|-+
T Consensus 521 m~rfl~kh~~ 530 (823)
T KOG2259|consen 521 MGRFLEKHTS 530 (823)
T ss_pred HHHHHHhccc
Confidence 8889988864
No 95
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.01 E-value=14 Score=37.03 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.9
Q ss_pred hHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 65 idlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
.+..+.+|..+++-...-|..|..++=. .+++...+.|=++.+..++++++|.||.+|+.+|+-+...
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 3556666666677666667777776633 3455666667778999999988999999999999988754
No 96
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=71.39 E-value=18 Score=32.88 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhc-cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQL-NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL-~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I 100 (178)
+..|++-|.++++. .|..-+-+|++.--. | .--.+-++ .++|+.+++|+.+|+.+..-++..|..+.-|. .+.|
T Consensus 325 ~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i 400 (415)
T PF12460_consen 325 LPKLLEGFKEADDE-IKSNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELI 400 (415)
T ss_pred HHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHH
Confidence 44677778777544 777777777777644 5 33345554 68999999999999988888888888887665 3333
Q ss_pred hhcCChhHHHHh
Q 030369 101 TKSGGIPLIIEC 112 (178)
Q Consensus 101 ~~~gGi~~li~l 112 (178)
.+ .+.-||..
T Consensus 401 ~~--hl~sLI~~ 410 (415)
T PF12460_consen 401 SE--HLSSLIPR 410 (415)
T ss_pred HH--HHHHHHHH
Confidence 32 45555443
No 97
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=71.07 E-value=32 Score=25.59 Aligned_cols=98 Identities=15% Similarity=0.302 Sum_probs=56.3
Q ss_pred ChHHHHhhhcCC-cHHHHHHHHHH---HHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHH-HHHHHHHHHhcCCcccc
Q 030369 64 VLELFLDCITEP-NEKLVEFGVGG---ICNASVDPANAAIITKSGGIPLIIECLSSPVRNTV-NHALGALYYLCSMSTKE 138 (178)
Q Consensus 64 vidlfld~L~~~-n~~l~EfAigg---LcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv-~~AlttL~~L~~~~sr~ 138 (178)
++|.+.+.|.+. .+ |+-+|| ++-|+.--+-...+++ ..+..++....+... ..++++|..+++.+...
T Consensus 7 lLP~l~~~L~~s~~~---d~~~a~ymIl~~La~k~~L~~~~l~----~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~ 79 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSP---DLQAAAYMILSVLASKVPLSDEVLN----ALMESILKNWTQETVQRQALICLIVLCQSQENV 79 (121)
T ss_pred HHHHHHHHHccCCcH---HHHHHHHHHHHHHHhhcCCcHHHHH----HHHHHHHhccccchhHHHHHHHHHHHHHccccc
Confidence 578888888844 44 555555 4445443333333322 133444455555555 99999999999775333
Q ss_pred ccc----------chHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369 139 EIL----------KPEVVDVIRRYAAAESVNVSFSNLAKAFLDK 172 (178)
Q Consensus 139 ~I~----------~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~ 172 (178)
+.. .|.+.+.+.+.+. +.++.++..+|+..
T Consensus 80 ~~lp~~~~~~l~~~~~l~~~L~~l~~----~~~i~~fl~~l~~~ 119 (121)
T PF12397_consen 80 DSLPRKVFKALLKLPDLIELLSELSE----KYDIDKFLRALLRS 119 (121)
T ss_pred ccCCHHHHHHHHcCccHHHHHHHHHh----cCCHHHHHHHHHHH
Confidence 332 2556666665533 23566777776653
No 98
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=70.50 E-value=5 Score=37.72 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=55.3
Q ss_pred CcccHHHhhhccChHHHHhhhcCCc-HHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHH
Q 030369 52 DPYNYTFLRQLNVLELFLDCITEPN-EKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALY 129 (178)
Q Consensus 52 DP~N~~~LrqL~vidlfld~L~~~n-~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~ 129 (178)
+..||+.||. ++..|+.++ +.+.--|.--|-... .-|..|..|.+.||=+.++++++++|++|.-||+-+..
T Consensus 361 nennyellki------L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 361 NENNYELLKI------LIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred hhccHHHHHH------HHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3456666654 466777654 444433433333333 34899999999999999999999999999999999988
Q ss_pred HhcC
Q 030369 130 YLCS 133 (178)
Q Consensus 130 ~L~~ 133 (178)
-|+.
T Consensus 435 ~lm~ 438 (442)
T KOG2759|consen 435 KLMV 438 (442)
T ss_pred HHHh
Confidence 7763
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.35 E-value=68 Score=32.93 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhhc-CC--
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNAS-VD-- 93 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL~-~D-- 93 (178)
=-||++.|||.-..++-.|-|.-++..|--|| +-|....-+..++.||+.|..+ |+.++-.|.--+||+- -|
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~s---rkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFS---RKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHH---HHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 46999999999999998888888888999998 3577777789999999999987 8999999999999984 22
Q ss_pred ------ch---------hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 94 ------PA---------NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 94 ------~~---------nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
++ .-.+|-..+.|.++++.+..-|=-|=..||..+..|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsall 150 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALL 150 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHH
Confidence 23 1234555677777777666655556666666665555
No 100
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=68.21 E-value=13 Score=34.94 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=49.8
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
=+++++.-|+||++.|-.-.++++-.+-.- .++..|.- ||-++++.|+.+++ +.-++|.+-+|++.-
T Consensus 24 ~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~L-Pv~~Ll~q~~~~~~-s~~vrnfsliyi~~g 91 (501)
T PF13001_consen 24 YLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQL-PVEALLKQYKEPSD-SSFVRNFSLIYIEMG 91 (501)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcC-cHHHHHHHHhCCCC-chHHHHHHHHHHHHh
Confidence 489999999999777766666666654433 45566655 48889999988652 678999999999753
No 101
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.25 E-value=79 Score=33.19 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred HHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH--HhhhcCChhHHHHhhcCCchh
Q 030369 42 IVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA--IITKSGGIPLIIECLSSPVRN 119 (178)
Q Consensus 42 vlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~--~I~~~gGi~~li~lLsS~~~e 119 (178)
+.|-+|--.+|. -|+- .++.+.+|..++|+.++|-|.--|.++.-...+.. +|-+- .+.+.+|+++++..
T Consensus 103 viAeia~~~l~e-~WPe-----ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l--~~lf~q~~~d~s~~ 174 (1075)
T KOG2171|consen 103 VIAEIARNDLPE-KWPE-----LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDL--LRLFSQTMTDPSSP 174 (1075)
T ss_pred HHHHHHHhcccc-chHH-----HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHH--HHHHHHhccCCcch
Confidence 344444444555 6664 46789999999999999999999999976554443 44322 56778888777655
Q ss_pred HHHHHHHHHHH--hcCC---cccccc--cchHHHHHHHHhhhhcc
Q 030369 120 TVNHALGALYY--LCSM---STKEEI--LKPEVVDVIRRYAAAES 157 (178)
Q Consensus 120 vv~~AlttL~~--L~~~---~sr~~I--~~p~ll~ll~~~~~~~~ 157 (178)
|...|+.++-- ...+ .-+..+ ..|.++..|++....++
T Consensus 175 vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d 219 (1075)
T KOG2171|consen 175 VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD 219 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc
Confidence 77666665532 2221 122222 25999999999998764
No 102
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=64.99 E-value=35 Score=26.34 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=45.3
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCC---cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSM---STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDK 172 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~ 172 (178)
++..|.+-|.++++.+++.|++.|=.|+.- .-..+|.+-.+++.|.+.-......+.+++.+...++.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 356778888899999999999988777733 23556666777777765554333233366666555544
No 103
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.02 E-value=87 Score=26.30 Aligned_cols=128 Identities=19% Similarity=0.293 Sum_probs=78.4
Q ss_pred HHHHHHHHHH------hhcCChHHHHHHHHH---Hhhhhc-cCcccHHHhhhccChHHHHhhh-cCCcHHHHHHHHHHHH
Q 030369 20 LQYLQELVSQ------FQNSTDEERKEKIVA---NLANFA-YDPYNYTFLRQLNVLELFLDCI-TEPNEKLVEFGVGGIC 88 (178)
Q Consensus 20 ~~ylq~LV~e------fq~t~~~e~keqvla---nLaNfA-yDP~N~~~LrqL~vidlfld~L-~~~n~~l~EfAiggLc 88 (178)
+.+||.++.. .-..+..+.-|..++ ..+-+. -+|. +-.+++.++-++| .++++..+-.|+-+|.
T Consensus 73 f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 73 FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3899988877 112223333344343 566665 6777 5567888899999 7889999999999999
Q ss_pred hhcCCchhhHHhhhc-CChhHHHHhhcCCchhHHHHHHHHHHHhcCC----cccccccchHHHHHHHHhhhhcc
Q 030369 89 NASVDPANAAIITKS-GGIPLIIECLSSPVRNTVNHALGALYYLCSM----STKEEILKPEVVDVIRRYAAAES 157 (178)
Q Consensus 89 NL~~D~~nk~~I~~~-gGi~~li~lLsS~~~evv~~AlttL~~L~~~----~sr~~I~~p~ll~ll~~~~~~~~ 157 (178)
-+| +..+++- ..-.-|..-|+.+..-.+..++--++.|+.. ....+..+..++..+=++..+.+
T Consensus 148 ~Lc-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 148 PLC-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHH-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 998 3333221 1112222334555444555556666666533 22344456888888888777664
No 104
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.79 E-value=16 Score=38.97 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=59.5
Q ss_pred CCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhh-hccCcccHHHhhhccChHHHHhhhcCC-------cHHHHHHHH
Q 030369 13 GRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLAN-FAYDPYNYTFLRQLNVLELFLDCITEP-------NEKLVEFGV 84 (178)
Q Consensus 13 ~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaN-fAyDP~N~~~LrqL~vidlfld~L~~~-------n~~l~EfAi 84 (178)
|...+.-++-.|-|-+=|-.+++++.+-.|+.-+.- |..||.||..+-++--+++|++.+.-- =.++.|||.
T Consensus 458 gsgkVkdLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAV 537 (2799)
T KOG1788|consen 458 GSGKVKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAV 537 (2799)
T ss_pred cCCcccchHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHH
Confidence 333344577778888889999999999999988764 779999999999999999999999842 236778887
Q ss_pred HH
Q 030369 85 GG 86 (178)
Q Consensus 85 gg 86 (178)
.-
T Consensus 538 tv 539 (2799)
T KOG1788|consen 538 TV 539 (2799)
T ss_pred hh
Confidence 53
No 105
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=62.75 E-value=8.1 Score=35.74 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=54.6
Q ss_pred cccHHHhhhccChHHHHhhhcCCcHH-HHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHH
Q 030369 53 PYNYTFLRQLNVLELFLDCITEPNEK-LVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYY 130 (178)
Q Consensus 53 P~N~~~LrqL~vidlfld~L~~~n~~-l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~ 130 (178)
..||+.+|+| ...|+..++. ..--|..-|-.+. +-|+....+...||=+.|+.+++++|++|.-+|+.+++-
T Consensus 352 kdny~i~k~L------~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~ 425 (432)
T COG5231 352 KDNYEIVKVL------KKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQT 425 (432)
T ss_pred hhhHHHHHHH------HHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHH
Confidence 4577777764 4667665443 2222222222332 458888999999999999999999999999999999988
Q ss_pred hcCC
Q 030369 131 LCSM 134 (178)
Q Consensus 131 L~~~ 134 (178)
++++
T Consensus 426 ~i~~ 429 (432)
T COG5231 426 CISS 429 (432)
T ss_pred HHhh
Confidence 8754
No 106
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=61.93 E-value=8.9 Score=31.32 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=44.6
Q ss_pred cCcccHHHhhhccChHHHHhhhcCC---c---------------HHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHH
Q 030369 51 YDPYNYTFLRQLNVLELFLDCITEP---N---------------EKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIE 111 (178)
Q Consensus 51 yDP~N~~~LrqL~vidlfld~L~~~---n---------------~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~ 111 (178)
=++.+...||.++++++.++.|..+ . ..+...+---|+.+|-+ +.|+.++.++ ++.++.
T Consensus 31 ~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~ 108 (207)
T PF01365_consen 31 PNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLIS 108 (207)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH----
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHH
Confidence 3467888999999999999999743 1 35677777889999977 8999999876 665544
Q ss_pred hh
Q 030369 112 CL 113 (178)
Q Consensus 112 lL 113 (178)
.+
T Consensus 109 ~~ 110 (207)
T PF01365_consen 109 IF 110 (207)
T ss_dssp -H
T ss_pred HH
Confidence 44
No 107
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=61.28 E-value=9.4 Score=30.92 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369 117 VRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDK 172 (178)
Q Consensus 117 ~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~ 172 (178)
+++.++++++.|++|+....|..+....+.+.+....-+. .+..-+++.|.+.
T Consensus 29 ~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~---e~~~~l~~~y~~~ 81 (166)
T cd04750 29 EVETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSD---DLNEILLQLYESN 81 (166)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCH---HHHHHHHHHHHHH
Confidence 4889999999999999888888888888888888777766 3555666655443
No 108
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.57 E-value=37 Score=35.45 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh-c-cChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--c
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ-L-NVLELFLDCITEPNEKLVEFGVGGICNASVD--P 94 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq-L-~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~ 94 (178)
=++|+.++.+ +++--.|...|-.|+=-+ ..=.++++. | +|++..+..|..+.++++--|.-+|-=++.| |
T Consensus 349 ~~~~l~~~l~----S~~w~~R~AaL~Als~i~--EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 349 LFEALEAMLQ----STEWKERHAALLALSVIA--EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 3566665554 444445555555555433 223345555 3 7888999999999999999999999999988 5
Q ss_pred hhhHHhhhcCChhHHHHhhcCC-chhHHHHHHHHHHHhcCCccccccc--chHHHH-HHHHhhhhc
Q 030369 95 ANAAIITKSGGIPLIIECLSSP-VRNTVNHALGALYYLCSMSTKEEIL--KPEVVD-VIRRYAAAE 156 (178)
Q Consensus 95 ~nk~~I~~~gGi~~li~lLsS~-~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~-ll~~~~~~~ 156 (178)
..+++--+. =+|.++..+.|+ ++.|..||..++.++.-.-....|. -|.+++ .|+...+++
T Consensus 423 ~iqk~~~e~-l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 423 EIQKKHHER-LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHHHHHh-ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554432 245788888555 5789999999999887443344444 478888 555555555
No 109
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=59.74 E-value=1.4e+02 Score=29.36 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC-------cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHH
Q 030369 39 KEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-------NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIE 111 (178)
Q Consensus 39 keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-------n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~ 111 (178)
+.-.++=||=|..||.=-.|=-=++.||+++..++.. |-.+++-+--||--.+--+.-....+++|||+-|-+
T Consensus 80 ~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q 159 (698)
T KOG2611|consen 80 LQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQ 159 (698)
T ss_pred HHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHH
Confidence 4445778999999999888877789999999999842 456889999999888877888899999999999987
Q ss_pred hhcCC
Q 030369 112 CLSSP 116 (178)
Q Consensus 112 lLsS~ 116 (178)
.-+-|
T Consensus 160 ~y~~~ 164 (698)
T KOG2611|consen 160 MYELP 164 (698)
T ss_pred HHhCC
Confidence 75433
No 110
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=59.53 E-value=23 Score=27.76 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=49.4
Q ss_pred hHHhhhcCChhHHHHhhcC---------CchhHHHHHHHHHHHhcCCc-cccccc-chHHHHHHHHhhhhcccchhHHHh
Q 030369 97 AAIITKSGGIPLIIECLSS---------PVRNTVNHALGALYYLCSMS-TKEEIL-KPEVVDVIRRYAAAESVNVSFSNL 165 (178)
Q Consensus 97 k~~I~~~gGi~~li~lLsS---------~~~evv~~AlttL~~L~~~~-sr~~I~-~p~ll~ll~~~~~~~~~~~~~~nl 165 (178)
-..+++.||+..|+++|.. .+.+....++.|+-.+++.+ .+..+. .|..+..+-..=.+. +.+++.+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~ 177 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKL 177 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHH
Confidence 3445567899988888722 23467788899999999773 344444 588887776665544 6788888
Q ss_pred HHHHHHhh
Q 030369 166 AKAFLDKH 173 (178)
Q Consensus 166 a~~fL~~~ 173 (178)
|.-.|.=.
T Consensus 178 ~leiL~~l 185 (187)
T PF06371_consen 178 ALEILAAL 185 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87666543
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.98 E-value=57 Score=33.18 Aligned_cols=78 Identities=15% Similarity=0.330 Sum_probs=53.3
Q ss_pred hhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCCcccccccchHHHHH
Q 030369 70 DCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS-SPVRNTVNHALGALYYLCSMSTKEEILKPEVVDV 148 (178)
Q Consensus 70 d~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~l 148 (178)
+.|+..+.++.=.|.-.+|-||...-..+.+-.+ .+.|+..|. .+|..+..-|+..||-.|+-++.+.|.. .+|+.
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~-elLqY 412 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVA-ELLQY 412 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHH-HHHHH
Confidence 3344445566666777777777664444444444 788888885 8889999999999999998777666643 34444
Q ss_pred HH
Q 030369 149 IR 150 (178)
Q Consensus 149 l~ 150 (178)
|.
T Consensus 413 L~ 414 (938)
T KOG1077|consen 413 LE 414 (938)
T ss_pred Hh
Confidence 44
No 112
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.82 E-value=7.3 Score=36.45 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHhhhhccC-cccHHHhhhccChHHHHhh--hcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369 42 IVANLANFAYD-PYNYTFLRQLNVLELFLDC--ITEPNEKLVEFGVGGICNASVD-PANAAII 100 (178)
Q Consensus 42 vlanLaNfAyD-P~N~~~LrqL~vidlfld~--L~~~n~~l~EfAiggLcNL~~D-~~nk~~I 100 (178)
|..=+||..|- |.|.+..|++|-+++.|+. ++..||.+.|..+.|+-+|--| ..|+++|
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 55567777876 9999999999999999985 4456999999999999999866 7788888
No 113
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=57.39 E-value=70 Score=30.34 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=71.9
Q ss_pred HHHHHhhcC-ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCc---hhhHH
Q 030369 25 ELVSQFQNS-TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDP---ANAAI 99 (178)
Q Consensus 25 ~LV~efq~t-~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D~---~nk~~ 99 (178)
-|+..+..| .+.-.+=|.+--.|=.+|+|-=-.+++..+.|..+.+.+.+. .+++..--++.+.|++.-. ..|.+
T Consensus 202 ~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~ 281 (442)
T KOG2759|consen 202 LLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKD 281 (442)
T ss_pred hhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHH
Confidence 445555422 134455667888899999999999999999999999999987 8999999999999998654 34443
Q ss_pred hhh---cCChhHHHHhhc---CCchhHH
Q 030369 100 ITK---SGGIPLIIECLS---SPVRNTV 121 (178)
Q Consensus 100 I~~---~gGi~~li~lLs---S~~~evv 121 (178)
|.. .++++..++.|. -.|+|++
T Consensus 282 ~~~~mv~~~v~k~l~~L~~rkysDEDL~ 309 (442)
T KOG2759|consen 282 IASQMVLCKVLKTLQSLEERKYSDEDLV 309 (442)
T ss_pred HHHHHHhcCchHHHHHHHhcCCCcHHHH
Confidence 322 467888888883 3356665
No 114
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=56.70 E-value=62 Score=28.57 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHhhh--hc--cCcccHHHhhhccChH--HHHhhhcC----------CcHHHHHHHHHHHHhh---cCCch
Q 030369 35 DEERKEKIVANLAN--FA--YDPYNYTFLRQLNVLE--LFLDCITE----------PNEKLVEFGVGGICNA---SVDPA 95 (178)
Q Consensus 35 ~~e~keqvlanLaN--fA--yDP~N~~~LrqL~vid--lfld~L~~----------~n~~l~EfAiggLcNL---~~D~~ 95 (178)
+..+|..++..|+= |- -|+.... .-+++++ -+..++.. +++.++--|+-|-+=| +.+..
T Consensus 144 ~~~~R~~~~~aLai~~fv~~~d~~~~~--~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~ 221 (309)
T PF05004_consen 144 SPKARAACLEALAICTFVGGSDEEETE--ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSK 221 (309)
T ss_pred chHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHH
Confidence 44566666655554 42 3444333 2344555 22233332 2456777666554444 33333
Q ss_pred hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHh---cCCcccccc---cchHHHHHHHHhhhhcccchhHHH
Q 030369 96 NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYL---CSMSTKEEI---LKPEVVDVIRRYAAAESVNVSFSN 164 (178)
Q Consensus 96 nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L---~~~~sr~~I---~~p~ll~ll~~~~~~~~~~~~~~n 164 (178)
....+. ..+|.++.+|.|++.+|...|=.+|-.| ..+. ..+. ..+.|++.|+.++.-+ ++..++
T Consensus 222 ~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~-~~~~~~~~~~~l~~~l~~La~dS--~K~~sK 291 (309)
T PF05004_consen 222 LEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLYELARDH-EEDFLYEDMEELLEQLRELATDS--SKSRSK 291 (309)
T ss_pred HHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc-cccccccCHHHHHHHHHHHHHhc--cCccch
Confidence 444443 3599999999999999988876665444 3331 1112 3588999999998844 454443
No 115
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=56.19 E-value=65 Score=24.66 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=41.5
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHhcCC-c--ccccccchHHHHHHHHhhhhc-ccchhHHHhHHHHHHhh
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYLCSM-S--TKEEILKPEVVDVIRRYAAAE-SVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L~~~-~--sr~~I~~p~ll~ll~~~~~~~-~~~~~~~nla~~fL~~~ 173 (178)
+..|.+-|.++++.+++.|++.|=.|+.- . -..+|-+-..+.-|.+..... ..++++++.+-.+++.+
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 56677778889999999999888766633 2 334444423333344443322 33566777776666543
No 116
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.59 E-value=67 Score=23.64 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=42.7
Q ss_pred cChHHHHhhhcCCc----HHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHH
Q 030369 63 NVLELFLDCITEPN----EKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGAL 128 (178)
Q Consensus 63 ~vidlfld~L~~~n----~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL 128 (178)
.|++.+..+|+... +.+...++.++..... -..-..|.+++=++.+.+.|++ +++...|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 45666777776532 7888999998888776 4444555566667888888855 44566776664
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=55.11 E-value=96 Score=29.18 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=84.6
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHhhcCC--hHHHHHHHHHHhhhhccCcccHH-------Hhh-----------hccChH
Q 030369 7 RQEERTGRSGTPRLQYLQELVSQFQNST--DEERKEKIVANLANFAYDPYNYT-------FLR-----------QLNVLE 66 (178)
Q Consensus 7 ~l~~rt~~~g~~R~~ylq~LV~efq~t~--~~e~keqvlanLaNfAyDP~N~~-------~Lr-----------qL~vid 66 (178)
.+--+||. +|++.| |..-|-++. .++++-..++|.+---|=|-|.. .|| +|+-++
T Consensus 339 dlllkTgp---paaehl--larafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPle 413 (524)
T KOG4413|consen 339 DLLLKTGP---PAAEHL--LARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLE 413 (524)
T ss_pred HHHhccCC---hHHHHH--HHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHH
Confidence 34445554 455543 555565553 56777777777777777766642 222 257789
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 67 LFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 67 lfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
+|+..++.+.+.++--|.--+--+..-|-..+.|+.+.|+ |+.......+..+-|..+=|.+|-.
T Consensus 414 LFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeef---ieiVtDastEhaKaakdAkYeccKA 478 (524)
T KOG4413|consen 414 LFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEF---IEIVTDASTEHAKAAKDAKYECCKA 478 (524)
T ss_pred HHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccc---eeeecccchhhHHHHHHHHHHHHHH
Confidence 9999999998888888887777788889999999987665 4445566677888888888988843
No 118
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=54.72 E-value=79 Score=24.98 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC---cHHHHHHHHHHHHh-hcCCchhhHHhhhcCCh-h
Q 030369 33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP---NEKLVEFGVGGICN-ASVDPANAAIITKSGGI-P 107 (178)
Q Consensus 33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~---n~~l~EfAiggLcN-L~~D~~nk~~I~~~gGi-~ 107 (178)
....+.|-+++.-|+-+- |..-.. . -+.+.-|++.+-.+ ++.+. |+-.+.- +=..|..-..|+.+.|+ +
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~-~--~~~~~~~i~~~~~~~~~d~~i~--~~~~l~~lfp~~~dv~~~l~~~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREE-F--KEKISDFIESLLDEGEMDSLII--AFSALTALFPGPPDVGSELFLSEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHH-H--HHHHHHHHHHHHCCHHCCHHHH--HHHHHHHHCTTTHHHHHHHCCTTTHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHH-H--HHHHHHHHHHHHccccchhHHH--HHHHHHHHhCCCHHHHHHHHhhhhHHH
Confidence 445667777777777662 221111 1 12334444443322 33332 2223333 35678888888888787 5
Q ss_pred HHHHhhc--CCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhh-hhcccchh-HHHhHHHHH
Q 030369 108 LIIECLS--SPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYA-AAESVNVS-FSNLAKAFL 170 (178)
Q Consensus 108 ~li~lLs--S~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~-~~~~~~~~-~~nla~~fL 170 (178)
.++.+.+ ++++.+...++.+|.-=|.++++.......-++.|.+.- .++ +.+ ++.+|.+=|
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~--~~~~ir~~A~v~L 154 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK--DDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC---HH-CHHHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc--chHHHHHHHHHHH
Confidence 6677777 788999999999999999886554555444555555433 433 445 777777644
No 119
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.86 E-value=95 Score=28.76 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHh
Q 030369 33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC 112 (178)
Q Consensus 33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~l 112 (178)
+++...+.-+++.|+. |..+..+..+..|..+++.+..-|+.+|+-+. ....++.|+..
T Consensus 128 ~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~a 186 (410)
T TIGR02270 128 ASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLY 186 (410)
T ss_pred CCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHH
Confidence 3344455555555555 22233445555566666777777777776552 23456778888
Q ss_pred hcCCchhHHHHHHHHHHHhcC
Q 030369 113 LSSPVRNTVNHALGALYYLCS 133 (178)
Q Consensus 113 LsS~~~evv~~AlttL~~L~~ 133 (178)
+.+++++|-..|+.++-.+-+
T Consensus 187 l~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 187 LRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred HcCCCHHHHHHHHHHHHHcCC
Confidence 888888888888888766544
No 120
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=53.28 E-value=36 Score=33.59 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCc----hhHHHHHHHHHHHhcCC
Q 030369 68 FLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPV----RNTVNHALGALYYLCSM 134 (178)
Q Consensus 68 fld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~----~evv~~AlttL~~L~~~ 134 (178)
..+.|+++|..-.--|.--|..+++|++....++...|+..+.++..+.+ .++..-+++++..|+.-
T Consensus 88 i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh 158 (713)
T KOG2999|consen 88 IMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH 158 (713)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 34555665443333399999999999999999999999999999986653 47778888888887743
No 121
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.92 E-value=56 Score=23.47 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=48.0
Q ss_pred hhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh----cCCchhHHHHHHHHH
Q 030369 60 RQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL----SSPVRNTVNHALGAL 128 (178)
Q Consensus 60 rqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL----sS~~~evv~~AlttL 128 (178)
.|-.++.+|...+.. .+..+.|.-+-||.++.- ++..-+.+ |-+.|.+.| ++++++++..|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~---~~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQ---SRGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HhHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455678899998654 588999999999999953 33334444 788888887 445688888887664
No 122
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.55 E-value=34 Score=31.36 Aligned_cols=70 Identities=19% Similarity=0.359 Sum_probs=54.4
Q ss_pred HHHHHhhcCCchhhHHhhhcCChhHH------------------------HHhh-----cCCchhHHHHHHHHHHHhcCC
Q 030369 84 VGGICNASVDPANAAIITKSGGIPLI------------------------IECL-----SSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 84 iggLcNL~~D~~nk~~I~~~gGi~~l------------------------i~lL-----sS~~~evv~~AlttL~~L~~~ 134 (178)
+|-|-|+|-|-.+...++. .++..+ .+.| ..|++++-+--+++||.||.-
T Consensus 196 agtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT 274 (353)
T KOG2973|consen 196 AGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT 274 (353)
T ss_pred HHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence 4778999999999999887 666655 2334 345789999999999999977
Q ss_pred -cccccccc---hHHHHHHHHhhh
Q 030369 135 -STKEEILK---PEVVDVIRRYAA 154 (178)
Q Consensus 135 -~sr~~I~~---p~ll~ll~~~~~ 154 (178)
..|..++. +|+++-+-.|-.
T Consensus 275 ~~GRe~lR~kgvYpilRElhk~e~ 298 (353)
T KOG2973|consen 275 RAGREVLRSKGVYPILRELHKWEE 298 (353)
T ss_pred hHhHHHHHhcCchHHHHHHhcCCC
Confidence 68888885 777777766654
No 123
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=50.73 E-value=29 Score=33.90 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=64.0
Q ss_pred HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC
Q 030369 56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133 (178)
Q Consensus 56 ~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~ 133 (178)
...|.+.++||..|---.--++.+..|++.+|.||.+- .+.+..|++...-+|+.-+-+|.|+-+-+||--+..-|.+
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 34566677777766655556799999999999999887 6777888998888999998888877777777666666655
Q ss_pred C-ccccccc
Q 030369 134 M-STKEEIL 141 (178)
Q Consensus 134 ~-~sr~~I~ 141 (178)
. +-..++.
T Consensus 337 ~KE~E~~Vr 345 (832)
T KOG3678|consen 337 NKEVEREVR 345 (832)
T ss_pred hhhhhHHHh
Confidence 4 3334444
No 124
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=50.61 E-value=28 Score=22.55 Aligned_cols=30 Identities=33% Similarity=0.693 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHH---HHHhhhh
Q 030369 20 LQYLQELVSQFQNSTDEERKEKI---VANLANF 49 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqv---lanLaNf 49 (178)
.|||+..|-+|=.+++...|++. ++.+..|
T Consensus 5 ~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 5 LEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 69999999999999886666654 4444444
No 125
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=50.35 E-value=65 Score=25.14 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHH
Q 030369 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGIC 88 (178)
Q Consensus 18 ~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLc 88 (178)
+.++=|+.|+.=...+.+....--+.--|.=|+ +-|.=+..+.++|+-+....+++.+|+.+...|+.|+-
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456778888887766655555444455577888 55999999999999999999999999999999998764
No 126
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=49.66 E-value=50 Score=32.86 Aligned_cols=80 Identities=14% Similarity=0.044 Sum_probs=60.3
Q ss_pred Hhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHH-HHHHHHHHhh--cCCchhhHHhhhcCChhHHHHhhcCCchhH
Q 030369 45 NLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLV-EFGVGGICNA--SVDPANAAIITKSGGIPLIIECLSSPVRNT 120 (178)
Q Consensus 45 nLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~-EfAiggLcNL--~~D~~nk~~I~~~gGi~~li~lLsS~~~ev 120 (178)
=.-|.+ ..|.|+.+.-++|+++..+..++.++...- +.+...+-|. +-+......+.+++-++.|.++||++|++-
T Consensus 32 ~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~ 111 (678)
T KOG1293|consen 32 MSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLN 111 (678)
T ss_pred HhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHh
Confidence 344555 567777789999999999999998754322 2355566665 678899999999999999999999999444
Q ss_pred HHHH
Q 030369 121 VNHA 124 (178)
Q Consensus 121 v~~A 124 (178)
++++
T Consensus 112 ~le~ 115 (678)
T KOG1293|consen 112 VLEK 115 (678)
T ss_pred HHHH
Confidence 4443
No 127
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=49.61 E-value=1.4e+02 Score=25.57 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred hccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCC
Q 030369 61 QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS-SPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 61 qL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~ 134 (178)
.-.+++.+...|..+++.+...|+-+|-++ .....++.++.+|+ +++..|-..|..+|..+-+.
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGEL----------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 345778888888888888787777766554 11235788889887 57777777777777776544
No 128
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.50 E-value=24 Score=37.23 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=69.4
Q ss_pred ChHHHHhhhc-CCcHHHHHHHHHHHHhhcCCchh-hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc
Q 030369 64 VLELFLDCIT-EPNEKLVEFGVGGICNASVDPAN-AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL 141 (178)
Q Consensus 64 vidlfld~L~-~~n~~l~EfAiggLcNL~~D~~n-k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~ 141 (178)
-+++|+..++ .+++.+.-.++.|+|-+.+-+.| -+-+ -+.+-+-|..+++.|-++|+-++.+|+-. ..|.
T Consensus 961 ~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiK 1032 (1251)
T KOG0414|consen 961 HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN---DMIK 1032 (1251)
T ss_pred HHHHHHHHHhcCCCceeeecchheccchhhhcccccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhH
Confidence 4678888888 78999999999999998776443 2222 24566667888899999999999999832 2222
Q ss_pred chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 142 KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 142 ~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
.--.+.-|-++=. +.+++|+++|+-|...-
T Consensus 1033 VKGql~eMA~cl~--D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 1033 VKGQLSEMALCLE--DPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred hcccHHHHHHHhc--CCcHHHHHHHHHHHHHh
Confidence 2222333333333 55789999999887653
No 129
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=48.53 E-value=25 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhccCcccHHHhh
Q 030369 37 ERKEKIVANLANFAYDPYNYTFLR 60 (178)
Q Consensus 37 e~keqvlanLaNfAyDP~N~~~Lr 60 (178)
+.|-+++--++...|||.||..+-
T Consensus 56 ~~kl~~lk~l~p~i~D~~n~~~i~ 79 (95)
T PF14771_consen 56 NDKLKALKLLYPYIVDPQNYYTII 79 (95)
T ss_pred HHHHHHHHHHhhhccCHHHHHHHH
Confidence 449999999999999999998753
No 130
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.83 E-value=29 Score=27.31 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=46.1
Q ss_pred CChhHHHHhhcCCchhHHHHHHHHHHHhcCC---cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369 104 GGIPLIIECLSSPVRNTVNHALGALYYLCSM---STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDK 172 (178)
Q Consensus 104 gGi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~ 172 (178)
.++..|.+-|.++++.+++.|++.|=.|+.- .-..+|-+..+++.|.+.... ..++++++.+-..++.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~ 111 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHH
Confidence 3466777778889999999999877666633 345566677777777765543 3356676666655554
No 131
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=47.71 E-value=1.5e+02 Score=29.40 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=72.2
Q ss_pred hhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHHhhhcCChh
Q 030369 30 FQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDPANAAIITKSGGIP 107 (178)
Q Consensus 30 fq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~ 107 (178)
++.......+-.+. +|||...+ |.|...+.+-+.++.|++||.. +++.++--+.|.+.|++.-....+......-+.
T Consensus 480 ~~~~~~~~~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~ 558 (699)
T KOG3665|consen 480 LRKIYWCDDVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID 558 (699)
T ss_pred hhccchhhHHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 44444444444444 99999966 9999999999999999999995 578899999999999975544333322111122
Q ss_pred --HHHHhhcCCc-hhHHHHHHHHHHHhcCC
Q 030369 108 --LIIECLSSPV-RNTVNHALGALYYLCSM 134 (178)
Q Consensus 108 --~li~lLsS~~-~evv~~AlttL~~L~~~ 134 (178)
-+-..++.-+ .|.--+|.+.|-.++.+
T Consensus 559 ~~~f~~~~~~w~~~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 559 FSVFKVLLNKWDSIERSYNAASILALLLSD 588 (699)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhC
Confidence 2222443333 38888888888888866
No 132
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=47.53 E-value=26 Score=36.81 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=69.5
Q ss_pred ChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc
Q 030369 64 VLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK 142 (178)
Q Consensus 64 vidlfld~L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~ 142 (178)
-||+|+.-|.-. ...+.-.-+.++|-+|.-++....=. ||.|..||..|++-|-.+++-.|-.|++-. |.+
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~----~vK 1040 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSVIVRRQTIILLARLLQFG----IVK 1040 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchHHHHHHHHHHHHHHHhhh----hhh
Confidence 578888888754 45566666778899999888765543 899999999998888899999999998652 221
Q ss_pred ---hHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 143 ---PEVVDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 143 ---p~ll~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
--++..|...= +.|+.|+|.|.-.+-
T Consensus 1041 w~G~Lf~Rf~l~l~---D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1041 WNGELFIRFMLALL---DANEDIRNDAKFYIS 1069 (1529)
T ss_pred cchhhHHHHHHHHc---ccCHHHHHHHHHHHH
Confidence 22333333322 446899999986654
No 133
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=46.90 E-value=39 Score=28.10 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=8.5
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+--|-++
T Consensus 90 a~lLK~fLReLPeP 103 (203)
T cd04374 90 TSALKTYLRNLPEP 103 (203)
T ss_pred HHHHHHHHHcCCCC
Confidence 35566666666654
No 134
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=45.81 E-value=36 Score=30.06 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHhhcC-CchhhHHh-hhcCChhHHHHhhcCC
Q 030369 75 PNEKLVEFGVGGICNASV-DPANAAII-TKSGGIPLIIECLSSP 116 (178)
Q Consensus 75 ~n~~l~EfAiggLcNL~~-D~~nk~~I-~~~gGi~~li~lLsS~ 116 (178)
+++.+.|||+.-|.|+|. |....-.| .+.+.|..++..+.+.
T Consensus 185 e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 185 EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 478999999999999985 44444344 5577788888888553
No 135
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.43 E-value=73 Score=28.75 Aligned_cols=88 Identities=10% Similarity=0.197 Sum_probs=58.4
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH----HhhhcCChhHHHHhhcCCchhHHHHHHHHH-HHhcCCccccccc
Q 030369 67 LFLDCITEPNEKLVEFGVGGICNASVDPANAA----IITKSGGIPLIIECLSSPVRNTVNHALGAL-YYLCSMSTKEEIL 141 (178)
Q Consensus 67 lfld~L~~~n~~l~EfAiggLcNL~~D~~nk~----~I~~~gGi~~li~lLsS~~~evv~~AlttL-~~L~~~~sr~~I~ 141 (178)
.+-.+|.++|=+....++-=|..+-.|+.|.. +|-+...+..++.+|+++...+...|...+ .+..+|.-.++|.
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 34445566677788888888999999999865 566677788999999998899999988877 4544663233333
Q ss_pred ------chHHHHHHHHhhh
Q 030369 142 ------KPEVVDVIRRYAA 154 (178)
Q Consensus 142 ------~p~ll~ll~~~~~ 154 (178)
..-|++.+..|..
T Consensus 293 ~iL~~Nr~kLl~fl~~f~~ 311 (335)
T PF08569_consen 293 DILIKNREKLLRFLKDFHT 311 (335)
T ss_dssp HHHHHTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 2556666666655
No 136
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.91 E-value=2.6e+02 Score=25.93 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=38.1
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
+.+.++..|+.+++.+..-+++++-. ....-.+.++.+|+++++.|-..|+.+|=++-..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 34555666665565555444433333 1122356788889888899999999998777544
No 137
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=43.75 E-value=52 Score=27.11 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=8.6
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+--|-++
T Consensus 74 a~lLK~fLReLPeP 87 (196)
T cd04387 74 AGTLKLYFRELPEP 87 (196)
T ss_pred HHHHHHHHHhCCCc
Confidence 35666666666654
No 138
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.30 E-value=36 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHH
Q 030369 40 EKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKL 79 (178)
Q Consensus 40 eqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l 79 (178)
...+..|...|-.|.=|+.|.++|++..++.+|+-+|..+
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 3446778889999999999999999999999999887544
No 139
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=41.69 E-value=63 Score=26.50 Aligned_cols=57 Identities=7% Similarity=0.149 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHhhcCCchh-hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 76 NEKLVEFGVGGICNASVDPAN-AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 76 n~~l~EfAiggLcNL~~D~~n-k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+..+.+-|.+-|=++...+.. -..|.+.=-++.++.+|..++++++.+|++.+.-|.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788899999999898766444 666666667789999998888999999999887776
No 140
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.38 E-value=38 Score=34.54 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred hHHHHhhhc-CCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc
Q 030369 65 LELFLDCIT-EPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK 142 (178)
Q Consensus 65 idlfld~L~-~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~ 142 (178)
+|+|+..+. .++|.+.-.|..|+.-+.+- .+..+.+ -..+-+-|...+.+|...++.|+-||+=. -.+..
T Consensus 935 lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLila---gq~KV 1006 (1128)
T COG5098 935 LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILA---GQLKV 1006 (1128)
T ss_pred HHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHc---cceee
Q ss_pred hHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
.--+..|-+.=. +.+.+|+++|.-|+.++
T Consensus 1007 KGqlg~ma~~L~--deda~Isdmar~fft~~ 1035 (1128)
T COG5098 1007 KGQLGKMALLLT--DEDAEISDMARHFFTQI 1035 (1128)
T ss_pred ccchhhhHhhcc--CCcchHHHHHHHHHHHH
No 141
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=40.82 E-value=66 Score=31.59 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=63.8
Q ss_pred HHhhcCChHHHHHHHHHHhhhhc-cC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCC
Q 030369 28 SQFQNSTDEERKEKIVANLANFA-YD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGG 105 (178)
Q Consensus 28 ~efq~t~~~e~keqvlanLaNfA-yD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gG 105 (178)
--|++|+..-.+..+ .+|+|+| |- -.-...+.|-.+-+-+.-.-.+-++.+.-||-.+.|-+.-.++.-..+..+|.
T Consensus 271 ~~~rRt~P~lLRH~A-LAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 271 YWCRRTDPALLRHCA-LALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred eecccCCHHHHHHHH-HHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccc
Confidence 346777655555554 4699999 43 23344555556655544444445889999999999999888888888899999
Q ss_pred hhHHHHhhcCCchh
Q 030369 106 IPLIIECLSSPVRN 119 (178)
Q Consensus 106 i~~li~lLsS~~~e 119 (178)
+.++--++.|.||.
T Consensus 350 laLVEPlva~~DP~ 363 (832)
T KOG3678|consen 350 LALVEPLVASLDPG 363 (832)
T ss_pred hhhhhhhhhccCcc
Confidence 88887777666553
No 142
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=40.76 E-value=42 Score=28.11 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHhhcCCchhhHHhhhcCC--hh-HHHHhhcCC---chhHHHHHHHHHHHhc
Q 030369 75 PNEKLVEFGVGGICNASVDPANAAIITKSGG--IP-LIIECLSSP---VRNTVNHALGALYYLC 132 (178)
Q Consensus 75 ~n~~l~EfAiggLcNL~~D~~nk~~I~~~gG--i~-~li~lLsS~---~~evv~~AlttL~~L~ 132 (178)
.++..+--++=.+||+-..+..+..+..+.+ |- .+..+.++. +.++...+.|.++|+.
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 4677777899999999999999999987654 22 223333443 6888888888888886
No 143
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=40.21 E-value=55 Score=24.01 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=48.5
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 67 LFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 67 lfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
--+..|.++.+=++-+|+--|..|...+. -..+-..+-+..+.+.|+.+++=|=++||-+|..|+.-
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34566677777789999999999987777 11111123356667778888898999999999888743
No 144
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=39.82 E-value=1.1e+02 Score=30.02 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=66.9
Q ss_pred HHhhhhccCcccHHHhhhccChHHHHhhhcCCcH-------------------HHHHHHHHHHHhhcCCchhhHHhhhcC
Q 030369 44 ANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-------------------KLVEFGVGGICNASVDPANAAIITKSG 104 (178)
Q Consensus 44 anLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~-------------------~l~EfAiggLcNL~~D~~nk~~I~~~g 104 (178)
=.+.-..||..|+..-+.-.++.....|+...-. .-.-+.+|++.-++.+ . .......
T Consensus 219 p~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~-q--Ls~~lp~ 295 (569)
T KOG1242|consen 219 PSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK-Q--LSLCLPD 295 (569)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH-H--HHHHHhH
Confidence 3333345788888877778888888888875411 1112334444443222 1 1222334
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHH
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRR 151 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~ 151 (178)
-||-+++.|...++++.+.+++|+-.++.-..-++|. .|.+++||..
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD 344 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence 5788888898888999999999999887554455566 4777777743
No 145
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=1.1e+02 Score=31.58 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=44.4
Q ss_pred hhcCCcHHHHHHHHHHHHhh-cCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC
Q 030369 71 CITEPNEKLVEFGVGGICNA-SVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133 (178)
Q Consensus 71 ~L~~~n~~l~EfAiggLcNL-~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~ 133 (178)
|.+...+-+..-|+-+|--| ++||.-|.++ ++.|-.||+..++-|+-+|+.++=-.|.
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 34455777777788888777 7899988887 4567788888888888888888766663
No 146
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.01 E-value=93 Score=24.26 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcc---ccccc-chHHHHHHHHhhhh------
Q 030369 87 ICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST---KEEIL-KPEVVDVIRRYAAA------ 155 (178)
Q Consensus 87 LcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~s---r~~I~-~p~ll~ll~~~~~~------ 155 (178)
|++++-+ +..-..| ++-|.+-|...++-|+.-||++|-|||...+ +..+. -..+++-++.|+..
T Consensus 25 ia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 25 IAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence 4555544 3444455 4567777866679999999999999997642 22222 37788888888873
Q ss_pred cccchhHHHhHHHHHH
Q 030369 156 ESVNVSFSNLAKAFLD 171 (178)
Q Consensus 156 ~~~~~~~~nla~~fL~ 171 (178)
.+.++.++..|+-.++
T Consensus 100 d~~~~~VR~~A~El~~ 115 (122)
T cd03572 100 DSLNEKVREEAQELIK 115 (122)
T ss_pred cchhHHHHHHHHHHHH
Confidence 2346688888877665
No 147
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=37.70 E-value=47 Score=26.23 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=41.5
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhcCC---cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLCSM---STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
.+..|.+-|.++++.+++.|++.|=.|+.- .-..+|.+-.+++-|.+.-... .++.+++.+--+++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~ 106 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHH
Confidence 466777778889999999999988777633 2355666666666655544432 24445544444443
No 148
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.46 E-value=51 Score=29.19 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCCchhhHHhhhcC--ChhHHHHhhcCCc---hhHHHHHHHHHHHhcCCcccccccchHHHHHHH
Q 030369 78 KLVEFGVGGICNASVDPANAAIITKSG--GIPLIIECLSSPV---RNTVNHALGALYYLCSMSTKEEILKPEVVDVIR 150 (178)
Q Consensus 78 ~l~EfAiggLcNL~~D~~nk~~I~~~g--Gi~~li~lLsS~~---~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~ 150 (178)
.+.-.|+++++.++.++.+...+++.+ -+..|+++++.++ .++..-|+.+|--++. .....+.|+..|.
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~----~~~~~~~V~~aLg 310 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISH----KRPRCSDVLRALG 310 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh----ccccHHHHHHHhc
Confidence 455678999999999999999999987 7788888885543 4555666666655553 3344455666664
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=1e+02 Score=29.03 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhccCcccHHH-hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHH--HHhhc
Q 030369 38 RKEKIVANLANFAYDPYNYTF-LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLI--IECLS 114 (178)
Q Consensus 38 ~keqvlanLaNfAyDP~N~~~-LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~l--i~lLs 114 (178)
+-.||.-=|-|+.-+..---. ....+++++++||+-.+|..+..-|+-.|--++.=|..-+.|++++-++++ +++-.
T Consensus 102 ackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa 181 (524)
T KOG4413|consen 102 ACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA 181 (524)
T ss_pred hHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh
Confidence 345666667776544333222 246789999999999999999999999999999999999999999888765 22222
Q ss_pred CCchhHH-HHHHHHHHHh--cCCcccccccchHHHHHHH
Q 030369 115 SPVRNTV-NHALGALYYL--CSMSTKEEILKPEVVDVIR 150 (178)
Q Consensus 115 S~~~evv-~~AlttL~~L--~~~~sr~~I~~p~ll~ll~ 150 (178)
.. .+++ ...++.+.-+ +++.+-.+.++.-++++|.
T Consensus 182 kc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 182 KC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLE 219 (524)
T ss_pred hh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHH
Confidence 21 2222 2222333322 3444566666666666665
No 150
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.00 E-value=1e+02 Score=22.63 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHH
Q 030369 108 LIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRR 151 (178)
Q Consensus 108 ~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~ 151 (178)
.++.-|++|.+-+..+++..|-.|+...+...+..|.+++++..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~ 50 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLS 50 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 44445555555566666666666664433233334555555443
No 151
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=35.14 E-value=83 Score=24.58 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCCCC--hHHHHHHH--HHHhhcC---ChHHHHHHHHHH----hhhhccCcccHHHhhhccCh
Q 030369 5 NQRQEERTGRSGTP--RLQYLQEL--VSQFQNS---TDEERKEKIVAN----LANFAYDPYNYTFLRQLNVL 65 (178)
Q Consensus 5 ~~~l~~rt~~~g~~--R~~ylq~L--V~efq~t---~~~e~keqvlan----LaNfAyDP~N~~~LrqL~vi 65 (178)
-.++.+|+|.+|-= =.+|-.+| |.|=++- =....||+ .+| +.-|.-||.||.-+.+||.+
T Consensus 14 ~~hl~~r~~~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~-F~N~P~efl~f~~dp~N~ee~~~Lgl~ 84 (114)
T PF09675_consen 14 IAHLEQRQPEYGDCSSPFDYQEALNMVAEANEAFDELPAHIRER-FNNDPEEFLEFLNDPKNYEEAIKLGLL 84 (114)
T ss_pred HHHHHhcCCcccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHH-hCCCHHHHHHHHhCccCHHHHHHhccc
Confidence 35788999999953 46665544 4432221 12233443 333 34489999999999999954
No 152
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=34.94 E-value=65 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=13.1
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+..+++-|..++.++...-+..|+.+.
T Consensus 99 ~~~~~~~Lp~~~~~~L~~l~~~l~~i~ 125 (174)
T smart00324 99 LRELISLLPPANRATLRYLLAHLNRVA 125 (174)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 445555555544555444444444444
No 153
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=34.59 E-value=1e+02 Score=25.49 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=9.5
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+.-|-++
T Consensus 80 a~lLK~flReLPeP 93 (216)
T cd04391 80 ASLLKLFIRELPQP 93 (216)
T ss_pred HHHHHHHHHhCCCc
Confidence 46667777777665
No 154
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=34.03 E-value=3.9e+02 Score=24.82 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=95.2
Q ss_pred hhCCCCCChHHHHHHHHHHh---------hcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCC-----
Q 030369 11 RTGRSGTPRLQYLQELVSQF---------QNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEP----- 75 (178)
Q Consensus 11 rt~~~g~~R~~ylq~LV~ef---------q~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~----- 75 (178)
++|.+.+-..+-++.|...= ...++.+...+++.=|+|--|. |.=+....+++..+-.+..|...
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 34444444555555555432 4556788888999999999987 88889999999999999999864
Q ss_pred --cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh----c-----C--------CchhHHHHHHHHHHHhcCCc-
Q 030369 76 --NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL----S-----S--------PVRNTVNHALGALYYLCSMS- 135 (178)
Q Consensus 76 --n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL----s-----S--------~~~evv~~AlttL~~L~~~~- 135 (178)
+..+.-.-+.-|+...-.-.-++.+-+++|+..|+..| . . .+.+.+...+-+++++....
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 34555556666666433334445556678999886654 1 1 14566778888889887442
Q ss_pred -cc---ccccchHHHHHHHHh
Q 030369 136 -TK---EEILKPEVVDVIRRY 152 (178)
Q Consensus 136 -sr---~~I~~p~ll~ll~~~ 152 (178)
.. ..-..|+++..+.++
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~ 192 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRL 192 (446)
T ss_pred cccchhhhHHHHHHHHHHHHH
Confidence 11 222258888888887
No 155
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=33.71 E-value=84 Score=25.53 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=9.1
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+--|-++
T Consensus 75 a~lLK~flReLP~p 88 (194)
T cd04372 75 TGALKLYFRDLPIP 88 (194)
T ss_pred HHHHHHHHHhCCCc
Confidence 46666777777655
No 156
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.27 E-value=4.8e+02 Score=25.79 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHH----hh----cCCc
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGIC----NA----SVDP 94 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLc----NL----~~D~ 94 (178)
|..|..++-..=..+.+++|+-.|-=. .|++.+--.+.+.+|++++...+-.+.+++-+-|. |+ -.||
T Consensus 21 l~dLL~~~~~~lp~~Lr~~i~~~LiLL----rNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 21 LKDLLRTNHTVLPPELREKIVKALILL----RNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHH----hccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 556666666677889999999998765 68888888899999999999988887777655443 22 1234
Q ss_pred hhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 95 ANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 95 ~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
.||.-= ..+..+|..+++.-.+-|+.++.-|.
T Consensus 97 lnkslq------~~~fsml~~~d~~~ak~a~~~~~eL~ 128 (616)
T KOG2229|consen 97 LNKSLQ------AFMFSMLDQSDSTAAKMALDTMIELY 128 (616)
T ss_pred HHHHHH------HHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 333211 24567777777777777777776665
No 157
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.23 E-value=50 Score=26.12 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.0
Q ss_pred hHHHHhhcCCchhHHHHHHHHHH
Q 030369 107 PLIIECLSSPVRNTVNHALGALY 129 (178)
Q Consensus 107 ~~li~lLsS~~~evv~~AlttL~ 129 (178)
..+.+||+++++++++.|+.|++
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll 42 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLL 42 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 45678889999999999998874
No 158
>PHA00099 minor capsid protein
Probab=33.18 E-value=98 Score=25.00 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=32.5
Q ss_pred HHHHHHhhCCCCC--ChHHHHHHHH--HHhhcC---ChHHHHHHHHHH----hhhhccCcccHHHhhhccCh
Q 030369 5 NQRQEERTGRSGT--PRLQYLQELV--SQFQNS---TDEERKEKIVAN----LANFAYDPYNYTFLRQLNVL 65 (178)
Q Consensus 5 ~~~l~~rt~~~g~--~R~~ylq~LV--~efq~t---~~~e~keqvlan----LaNfAyDP~N~~~LrqL~vi 65 (178)
-.++.+|+|.+|. .=.+|-.+|= .|=|+. =....|+. .+| +.-|--||.||.--..||.+
T Consensus 44 l~h~~rRq~~ygdc~sp~D~qeAl~~V~~~qeaFdsLPA~iR~~-F~NdP~eml~~L~dp~NydEa~~LGl~ 114 (147)
T PHA00099 44 LEHVERRQPRYGDCMSPMDYQEALNVVIEAQEAFDSLPAKIRER-FGNDPEEMLDFLSDPENYDEAKALGLV 114 (147)
T ss_pred hhhhhhhCCccccCCCchhHHHHHHHHHHHHHHHHhhhHHHHHH-hCCCHHHHHHHHcChhhHHHHHhccee
Confidence 4678999999996 3567766653 222211 01111111 222 22355677777777777655
No 159
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.30 E-value=1e+02 Score=31.34 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=55.4
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccc-c
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEE-I 140 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~-I 140 (178)
+.|=|.+-|..+|+.++--|.+-||.|+ -+|.|=-.. -|.+-.+|.+.+.+-++--+--|+-=++| +-|-- -
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK 256 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK 256 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh
Confidence 4566778888899999999999999997 567775554 47788888444455555444444433333 32222 1
Q ss_pred cchHHHHHHHHh
Q 030369 141 LKPEVVDVIRRY 152 (178)
Q Consensus 141 ~~p~ll~ll~~~ 152 (178)
++||+.++|.+=
T Consensus 257 Lieplt~li~sT 268 (877)
T KOG1059|consen 257 LIEPITELMEST 268 (877)
T ss_pred hhhHHHHHHHhh
Confidence 257888777653
No 160
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.77 E-value=94 Score=25.05 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=8.9
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+.-|-++
T Consensus 73 a~llK~yLreLP~p 86 (184)
T cd04385 73 ADVLKRFLRDLPDP 86 (184)
T ss_pred HHHHHHHHHhCCCc
Confidence 46666677666654
No 161
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.65 E-value=86 Score=25.41 Aligned_cols=14 Identities=36% Similarity=0.403 Sum_probs=9.3
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+..|-++
T Consensus 70 a~~lK~flreLpep 83 (192)
T cd04402 70 ASVLKDFLRNIPGS 83 (192)
T ss_pred HHHHHHHHHhCCCc
Confidence 46666777777654
No 162
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=31.09 E-value=79 Score=20.63 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHH
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIV 43 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvl 43 (178)
.|||+..+=.|=.+.+.+ |+|.+
T Consensus 4 ~eYLKNVll~fl~~~e~~-r~~ll 26 (46)
T smart00755 4 FEYLKNVLLQFLTLRESE-RETLL 26 (46)
T ss_pred HHHHHHHHHHHhccCcch-HHHHH
Confidence 699999999999998775 66644
No 163
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.06 E-value=1.1e+02 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
.+..|-..=|-||. ||.. . ...+.|..||.+++.+|+..++.+++-+.+-
T Consensus 7 ~IL~Ft~lLLEnc~----NRsl-Y--sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 7 AILRFTRLLLENCG----NRSL-Y--SSSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred HHHHHHHHHHhccC----CCCc-c--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 34556666666663 4433 3 5689999999999999999999999988854
No 164
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=30.92 E-value=68 Score=23.54 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc
Q 030369 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFA 50 (178)
Q Consensus 18 ~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA 50 (178)
||.+-|-.||.+|-.+++ +.+++++.-.--.+
T Consensus 1 G~i~~lD~la~~f~~~~~-~~~~~i~~~~~~~~ 32 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASD-DEREEILEEAKAAA 32 (95)
T ss_dssp T--HHHHHHHHHHHHS-C-HHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHcCcH-HHHHHHHHHHHHHH
Confidence 688899999999999987 77788776655444
No 165
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=30.64 E-value=90 Score=25.55 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhcccch-hHHHhHHHH
Q 030369 145 VVDVIRRYAAAESVNV-SFSNLAKAF 169 (178)
Q Consensus 145 ll~ll~~~~~~~~~~~-~~~nla~~f 169 (178)
++..|.+.+.+++.|+ ...|||.+|
T Consensus 133 L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 133 LMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 3344444444333333 445555554
No 166
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=30.56 E-value=1.2e+02 Score=30.51 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHhhh--------hccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhh-cCCchhhHHhhhcC
Q 030369 34 TDEERKEKIVANLAN--------FAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA-SVDPANAAIITKSG 104 (178)
Q Consensus 34 ~~~e~keqvlanLaN--------fAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL-~~D~~nk~~I~~~g 104 (178)
++.-.|...|..|+| |.|. +|++|+-+ .-.+.=+.+++.++.-|-||+|-+ .+.+++-+.+.|+-
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E-~erNy~mq-----vvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~a 263 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYE-EERNYFMQ-----VVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENA 263 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcch-hhhchhhe-----eeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665 5554 33444433 334555677899999999999987 68888888888875
Q ss_pred ChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 105 GIPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 105 Gi~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
=-.+.++-..|++.+|..-|++--...|
T Consensus 264 L~alt~~~mks~nd~va~qavEfWstic 291 (858)
T COG5215 264 LAALTGRFMKSQNDEVAIQAVEFWSTIC 291 (858)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 5567788889999999999998665554
No 167
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=30.44 E-value=1.2e+02 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=6.4
Q ss_pred cChHHHHhhhcCC
Q 030369 63 NVLELFLDCITEP 75 (178)
Q Consensus 63 ~vidlfld~L~~~ 75 (178)
+++-.|+--|-++
T Consensus 76 ~lLK~fLReLP~p 88 (182)
T cd04381 76 SLLKQYLRELPEP 88 (182)
T ss_pred HHHHHHHHhCCCc
Confidence 4444555555443
No 168
>PF06595 BDV_P24: Borna disease virus P24 protein; InterPro: IPR009517 Borna disease virus (BDV) is a non-cytolytic, neurotropic RNA virus that has a broad host range in warm-blooded animals. BDV is an enveloped virus, non-segmented, negative-stranded RNA genome and has an organisation characteristic of a member of Bornaviridae in the order of Mononegavirale. This family consists of several BDV P24 (phosphoprotein 24) proteins. They are essential components of the RNA polymerase transcription and replication complex. P24 is encoded by open reading frame II (ORF-II) and undergoes high rates of mutation in humans. They bind amphoterin-HMGB1, a multifunctional protein, directly may cause deleterious effects in cellular functions by its interference with HMGB1 []. Horse and human P24 have no species-specific amino acid residues, suggesting that the two viruses related [, ]. Numerous interactions of the immune system with the central nervous system have been described. Mood and psychotic disorders, such as severe depression and schizophrenia, are both heterogeneous disorders regarding clinical symptomatology, the acuity of symptoms, the clinical course and the treatment response []. BDV p24 RNA has been detected in the peripheral blood mononuclear cells (PBMCs) of psychiatric patients with such conditions []. Some studies find a significant difference in the prevalence of BDV p24 RNA in patients with mood disorders and schizophrenia [], whilst others find no difference between patients and control groups []. Consequently, debate about the role of BDV in psychiatric diseases remains alive.
Probab=30.05 E-value=31 Score=28.88 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=23.7
Q ss_pred HhhCCCCCChHHHHHHHHHHhhcCChHHH
Q 030369 10 ERTGRSGTPRLQYLQELVSQFQNSTDEER 38 (178)
Q Consensus 10 ~rt~~~g~~R~~ylq~LV~efq~t~~~e~ 38 (178)
+|||+.-+.--|-+++||+|.-+++..|+
T Consensus 62 ~~TGREqLSndeLikqLvtElae~~miea 90 (201)
T PF06595_consen 62 QRTGREQLSNDELIKQLVTELAENSMIEA 90 (201)
T ss_pred ccchHHhhchHHHHHHHHHHHhhccchhH
Confidence 56888888888899999999988776665
No 169
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.93 E-value=1.2e+02 Score=24.35 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=8.7
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+.-|-++
T Consensus 77 a~~LK~fLreLp~p 90 (192)
T cd04398 77 ASLLKLFFRELPEP 90 (192)
T ss_pred HHHHHHHHHhCCCc
Confidence 45566677666654
No 170
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.81 E-value=1.1e+02 Score=28.06 Aligned_cols=89 Identities=11% Similarity=0.227 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCchhh----HHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcc-ccccc------c
Q 030369 74 EPNEKLVEFGVGGICNASVDPANA----AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST-KEEIL------K 142 (178)
Q Consensus 74 ~~n~~l~EfAiggLcNL~~D~~nk----~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~s-r~~I~------~ 142 (178)
++|-....+++-.+..+-+|..|. .||..-..+.+++.+|..+..+++..|.....-.+.... -.+|. .
T Consensus 223 s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr 302 (342)
T KOG1566|consen 223 SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR 302 (342)
T ss_pred ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc
Confidence 345556677778888888887774 566655778999999988889999999988876663322 22222 3
Q ss_pred hHHHHHHHHhhhhcccchhH
Q 030369 143 PEVVDVIRRYAAAESVNVSF 162 (178)
Q Consensus 143 p~ll~ll~~~~~~~~~~~~~ 162 (178)
|-|++++-.|..-...+.++
T Consensus 303 ~KLl~~l~~f~~d~~~DeqF 322 (342)
T KOG1566|consen 303 PKLLELLHDFHTDRTEDEQF 322 (342)
T ss_pred HHHHHHHHHhCCCCCchhhh
Confidence 88888888887633223443
No 171
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.19 E-value=39 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhh
Q 030369 5 NQRQEERTGRSGTPRLQYLQELVSQFQ 31 (178)
Q Consensus 5 ~~~l~~rt~~~g~~R~~ylq~LV~efq 31 (178)
.+.|++-..+.|+.|-+|+..+|.+|-
T Consensus 11 ~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 11 YERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 355666667778999999999999874
No 172
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.90 E-value=1.8e+02 Score=21.22 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHH
Q 030369 36 EERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGG 86 (178)
Q Consensus 36 ~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAigg 86 (178)
.+..++++.-+.-+-. =..-.++.+-+.++.++..|..+ .+++-|+-|
T Consensus 100 ~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHh
Confidence 5555555555555554 33344444555666666666333 235555544
No 173
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=28.40 E-value=1.5e+02 Score=22.60 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=37.4
Q ss_pred HHHHhh--cCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369 108 LIIECL--SSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH 173 (178)
Q Consensus 108 ~li~lL--sS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~ 173 (178)
.|..|| .++|++-.+.++.-|..| +-...++ -|.+|..|++.+..-. |..|+..|+..-.+|
T Consensus 10 ~Ik~~L~~~~~Dv~kcL~~LdeL~~l---~vT~~mL~kn~e~V~TlkklRrY~g-n~~Ir~KA~~lYnkf 75 (106)
T PF11467_consen 10 EIKSSLKVDNPDVKKCLKALDELKSL---QVTSLMLQKNPECVETLKKLRRYKG-NQQIRKKATELYNKF 75 (106)
T ss_dssp HHHHTCETTEE-HHHHHHHHHHHHTS------HHHHTTTHHHHHHHHHHTT-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcc---CCCHHHHHhCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 456677 677777777777777665 2222222 4889888866555322 568999998655544
No 174
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.34 E-value=3.3e+02 Score=23.46 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=15.7
Q ss_pred ChHHHHhhhcCCcHHHHHHHHHHHHhhc
Q 030369 64 VLELFLDCITEPNEKLVEFGVGGICNAS 91 (178)
Q Consensus 64 vidlfld~L~~~n~~l~EfAiggLcNL~ 91 (178)
++|..|..++..++.....|.-+|.++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll 147 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLL 147 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554
No 175
>PF13494 DUF4119: Domain of unknown function, B. Theta Gene description (DUF4119)
Probab=28.16 E-value=1.2e+02 Score=22.92 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=41.4
Q ss_pred cHHHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCc
Q 030369 4 NNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDP 53 (178)
Q Consensus 4 s~~~l~~rt~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP 53 (178)
|.+.|..|+|-.|--| .|+-.-..-|.+..-.-..-.-|-|||-+-||-
T Consensus 31 s~eElekr~~itgd~~-~y~t~~Lr~f~eg~~~~~~~KkL~~LA~yI~d~ 79 (96)
T PF13494_consen 31 SEEELEKRIGITGDKK-HYFTVYLRKFYEGEFHNSYSKKLKDLAEYIYDW 79 (96)
T ss_pred cHHHHHhhcCCcchhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHhhc
Confidence 5678999999999766 677777788998888888888899999999984
No 176
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=27.58 E-value=90 Score=20.19 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369 143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE 176 (178)
Q Consensus 143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~ 176 (178)
|...+.|.++...-...+.+..+|..+++++...
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~ 36 (88)
T cd00043 3 PTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLD 36 (88)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 4456666666665555667888888888887653
No 177
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=27.53 E-value=24 Score=29.55 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.9
Q ss_pred hccCcccHHHhhhccChHHHHhhhc
Q 030369 49 FAYDPYNYTFLRQLNVLELFLDCIT 73 (178)
Q Consensus 49 fAyDP~N~~~LrqL~vidlfld~L~ 73 (178)
+|-+|.||...-+|+.++.|.++|-
T Consensus 102 vAaNPVNYGkp~kLss~EAlaAaLY 126 (179)
T COG2042 102 VAANPVNYGKPFKLSSAEALAAALY 126 (179)
T ss_pred hhcCCcccCCcchhchHHHHHHHHH
Confidence 6889999999999999999988875
No 178
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=1.5e+02 Score=28.62 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=52.2
Q ss_pred cHHHhhhccChHHHHhhhcC---------CcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh
Q 030369 55 NYTFLRQLNVLELFLDCITE---------PNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL 113 (178)
Q Consensus 55 N~~~LrqL~vidlfld~L~~---------~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL 113 (178)
|...+-+++-||..|..|+. +.+.+.|.---|||-+..-|.|++-+....|+++.+=.+
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLML 327 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHH
Confidence 99999999999999999973 256888988999999999999999999999999775444
No 179
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.02 E-value=1.3e+02 Score=24.39 Aligned_cols=27 Identities=4% Similarity=0.059 Sum_probs=13.5
Q ss_pred hhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369 106 IPLIIECLSSPVRNTVNHALGALYYLC 132 (178)
Q Consensus 106 i~~li~lLsS~~~evv~~AlttL~~L~ 132 (178)
+..+++.|..++-.+...-+..|+...
T Consensus 111 l~~li~~LP~~n~~~L~~l~~~L~~v~ 137 (185)
T cd04373 111 LKELLKKFPPENFDVFKYVITHLNKVS 137 (185)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444444444
No 180
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=26.95 E-value=1.2e+02 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=12.2
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHhh
Q 030369 7 RQEERTGRSGTPRLQYLQELVSQFQ 31 (178)
Q Consensus 7 ~l~~rt~~~g~~R~~ylq~LV~efq 31 (178)
.+-+|+|. ++|+ .+..+++...
T Consensus 11 ~~~~r~g~-~IP~--~i~~~i~~L~ 32 (220)
T cd04375 11 VNLQRTGQ-PLPR--SIQQAMRWLR 32 (220)
T ss_pred HHHhhcCC-CCCh--HHHHHHHHHH
Confidence 34566664 5775 3555555443
No 181
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=26.77 E-value=1.5e+02 Score=22.40 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=11.1
Q ss_pred cccHHHhhhccChHHHHhhhcCC
Q 030369 53 PYNYTFLRQLNVLELFLDCITEP 75 (178)
Q Consensus 53 P~N~~~LrqL~vidlfld~L~~~ 75 (178)
+.++..--=.+++-.|+..|.++
T Consensus 47 ~~~~~~~~va~~lK~~l~~Lp~p 69 (169)
T cd00159 47 LEDYDVHDVASLLKLYLRELPEP 69 (169)
T ss_pred ccccCHHHHHHHHHHHHHcCCCc
Confidence 33443333345555566666543
No 182
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=26.35 E-value=6.4e+02 Score=24.87 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~ 102 (178)
|-.|+.-+-++ .=-.|..++.=|-..+|=---.-.+.--+++|...+.|....+.+.+-|+.+|-.+|.=-.|.+ |..
T Consensus 256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~ 333 (569)
T KOG1242|consen 256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK 333 (569)
T ss_pred hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence 34444444444 2233444444444555322223345556889999999999999999999999999986666666 332
Q ss_pred cCChhHHHHhhcCCc
Q 030369 103 SGGIPLIIECLSSPV 117 (178)
Q Consensus 103 ~gGi~~li~lLsS~~ 117 (178)
-+|.+++|++.|.
T Consensus 334 --~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 334 --IIPTLLDALADPS 346 (569)
T ss_pred --HHHHHHHHhcCcc
Confidence 3799999999885
No 183
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=26.24 E-value=2.5e+02 Score=28.62 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=57.0
Q ss_pred cChHHHHhhhcCC----cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcC-----CchhHHHHHHHHHHHhcC
Q 030369 63 NVLELFLDCITEP----NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSS-----PVRNTVNHALGALYYLCS 133 (178)
Q Consensus 63 ~vidlfld~L~~~----n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS-----~~~evv~~AlttL~~L~~ 133 (178)
++.+.||+.|.++ .+.=++|+++++ +.+.||+..+++.+.+ ...+.+...+..|.+++.
T Consensus 84 eAtE~~v~~l~~~~~~~~d~e~~~~~~~v------------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K 151 (802)
T PF13764_consen 84 EATEEFVESLEDDSEEEEDPEQEFKIASV------------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK 151 (802)
T ss_pred ccchhhHhhccCccccccCHHHHHHHHHH------------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh
Confidence 5788999999764 233457777653 5678999999888843 345677888888888886
Q ss_pred C-ccccccc----chHHHHHHHHhhh
Q 030369 134 M-STKEEIL----KPEVVDVIRRYAA 154 (178)
Q Consensus 134 ~-~sr~~I~----~p~ll~ll~~~~~ 154 (178)
- .+|..+. .|.+|+.+++.=+
T Consensus 152 v~~NR~~Ll~~~al~~LL~~L~~~l~ 177 (802)
T PF13764_consen 152 VKVNRRALLELNALNRLLSVLNRALQ 177 (802)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6 5777776 3777777764444
No 184
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.21 E-value=4.1e+02 Score=28.46 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=41.6
Q ss_pred hHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 107 PLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 107 ~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
.-+..+|+|..++++..||..+--++.. .+++. -|.||.-+.+|.+-+ +..++....-|||+.+
T Consensus 830 ~~V~~~L~s~sreI~kaAI~fikvlv~~--~pe~~l~~~~~~LL~sll~ls~d~--k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 830 SMVCLYLASNSREIAKAAIGFIKVLVYK--FPEECLSPHLEELLPSLLALSHDH--KIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHc--CCHHHHhhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH
Confidence 3445567898999999999998877744 23333 244666666666633 3456666666666554
No 185
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.17 E-value=5.6e+02 Score=24.25 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=57.6
Q ss_pred ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh----hcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCCcc
Q 030369 62 LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT----KSGGIPLIIECLS-SPVRNTVNHALGALYYLCSMST 136 (178)
Q Consensus 62 L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~----~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~~s 136 (178)
=++++.|+..+. .+.+.+|=.--|. +-++.....|+ +.+=|+.|+.+|+ +.++++.-+|-..|.-+++-+.
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 356666666664 3333443332222 22234444443 3666799999995 4457888777777665552211
Q ss_pred ---------------cccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369 137 ---------------KEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 137 ---------------r~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~ 171 (178)
-..+.+|+.++.|-.+-..+.....+.|-..++++
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~Ilie 145 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIE 145 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 11222577777776665521113357777777664
No 186
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=24.96 E-value=39 Score=27.61 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=53.5
Q ss_pred cCChHHHHHHHH----HHhhhhccCcccHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCchhh------HHh
Q 030369 32 NSTDEERKEKIV----ANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDPANA------AII 100 (178)
Q Consensus 32 ~t~~~e~keqvl----anLaNfAyDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D~~nk------~~I 100 (178)
.|++++.|+|.+ --|-|| |+. =|+-++..|+.+ -+.|+.|==-|+.+.+.-++.- +.+
T Consensus 65 ~t~~q~vK~~a~~~v~~vL~~i----------k~a-dI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~ 133 (152)
T KOG3380|consen 65 GTKDQEVKDRALNVVLKVLTSI----------KQA-DIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKL 133 (152)
T ss_pred CCccHHHHHHHHHHHHHHHHHH----------HHH-hHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 456667777643 334443 332 368888888865 5688888888888777767766 688
Q ss_pred hhcCChhHHHHhhcCC
Q 030369 101 TKSGGIPLIIECLSSP 116 (178)
Q Consensus 101 ~~~gGi~~li~lLsS~ 116 (178)
.+.+|+-+|+++||+.
T Consensus 134 ~~~~GvG~IvRvLs~r 149 (152)
T KOG3380|consen 134 VAKSGVGCIVRVLSDR 149 (152)
T ss_pred HHhcCCceEEEeecCC
Confidence 8999999999999875
No 187
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.82 E-value=1.1e+02 Score=25.45 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=35.4
Q ss_pred ccChHHHHhhhcCC---cHHHHHH-HHHHHHhhcCCc------hhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHh
Q 030369 62 LNVLELFLDCITEP---NEKLVEF-GVGGICNASVDP------ANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYL 131 (178)
Q Consensus 62 L~vidlfld~L~~~---n~~l~Ef-AiggLcNL~~D~------~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L 131 (178)
.+++-.|+--|-++ ....-+| .++.+|... |. ..++..++ .+..++..|-.++-.+...-+..|+..
T Consensus 65 a~lLK~flReLPePLi~~~~y~~~~~i~~l~~~~-~~~~~~~~~~~~~~i~--~l~~ll~~LP~~n~~~L~~L~~~L~~V 141 (208)
T cd04392 65 ATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFD-EKGNKTSAPDKERLLE--ALQLLLLLLPEENRNLLKLILDLLYQT 141 (208)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHHhhccc-ccccccCCCCHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 47777888888765 2222222 233444321 11 11222221 366677777776667766666655554
Q ss_pred c
Q 030369 132 C 132 (178)
Q Consensus 132 ~ 132 (178)
.
T Consensus 142 ~ 142 (208)
T cd04392 142 A 142 (208)
T ss_pred H
Confidence 4
No 188
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=24.80 E-value=1.8e+02 Score=20.19 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 116 PVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 116 ~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
++.+.++.++..|-.+. -+...+..-.+=..+..++.+. +++++.+|+.....+.
T Consensus 18 ~~~~~~~~~L~~L~~~~--it~~~L~~T~iG~~V~~Lrkh~--~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 18 EEVSRLLDLLRLLKKLP--LTVEILKETRIGKKVNSLRKHS--NEKIRKLAKALIKSWK 72 (76)
T ss_pred CCHHHHHHHHHHHhcCC--CCHHHHHHCCHHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence 45666667776666543 2344444455555666677766 4899999999887754
No 189
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.73 E-value=94 Score=31.65 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=39.6
Q ss_pred hcCCchhhHHhhhcCChhHHHHhhcCCch-hHHHHHHHHHHHhcCC-ccccccc--chHHHHHHHHhhh
Q 030369 90 ASVDPANAAIITKSGGIPLIIECLSSPVR-NTVNHALGALYYLCSM-STKEEIL--KPEVVDVIRRYAA 154 (178)
Q Consensus 90 L~~D~~nk~~I~~~gGi~~li~lLsS~~~-evv~~AlttL~~L~~~-~sr~~I~--~p~ll~ll~~~~~ 154 (178)
=|+-|.+|.++.++||+.-+.+-|..... +..-=+-.+||||+.- ..-.++. +-.++--|.++..
T Consensus 361 Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~lnmdldf~Slelmi~LL~~ek 429 (865)
T KOG2152|consen 361 KCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKLNMDLDFLSLELMIHLLRLEK 429 (865)
T ss_pred hccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhhcccccchhHHHHHHHHhhhc
Confidence 35669999999999999999998844433 3332233467777644 4444444 3334444444443
No 190
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.64 E-value=2e+02 Score=23.49 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=9.5
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+.-|-++
T Consensus 78 a~~lK~fLreLp~p 91 (203)
T cd04386 78 ASALKSYLRELPDP 91 (203)
T ss_pred HHHHHHHHHhCCCc
Confidence 56677777777654
No 191
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.58 E-value=1.8e+02 Score=29.66 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=71.5
Q ss_pred cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcC--------ChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSG--------GIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~g--------Gi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
..+|.+..+|.+++....|=|.|+|--.|-|.. ++++.. =||.+.+..++|.|-+-.+|+.++=+.+-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 356888899999998999999999999998854 333331 256677888999999999999988665533
Q ss_pred cc-cccccchHHHHHHHHhhhhcccchhHH-HhHHHH
Q 030369 135 ST-KEEILKPEVVDVIRRYAAAESVNVSFS-NLAKAF 169 (178)
Q Consensus 135 ~s-r~~I~~p~ll~ll~~~~~~~~~~~~~~-nla~~f 169 (178)
.+ .-...+...++-+ |+.+.++++-++ |+|.+|
T Consensus 205 ~~qal~~~iD~Fle~l--FalanD~~~eVRk~vC~al 239 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEIL--FALANDEDPEVRKNVCRAL 239 (885)
T ss_pred CcHHHHHHHHHHHHHH--HHHccCCCHHHHHHHHHHH
Confidence 21 2223345666666 666667777765 455544
No 192
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.52 E-value=6.8e+02 Score=25.46 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCc---HHHHHHHHHHHHhhcCCchhhH
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPN---EKLVEFGVGGICNASVDPANAA 98 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n---~~l~EfAiggLcNL~~D~~nk~ 98 (178)
++.|+..|=....-+.++.++.||.=++|= --+|... .+++-|+.....++ -...-|++.-|.+++-++...+
T Consensus 519 ~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~---~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~ 595 (759)
T KOG0211|consen 519 LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL---EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCE 595 (759)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH---HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHH
Confidence 344444443334558899999999988843 2455544 45677777776653 2334566677777777777777
Q ss_pred HhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc---CCcccccccchHHHHHHHHhhhhcccchhH
Q 030369 99 IITKSGGIPLIIECLSSPVRNTVNHALGALYYLC---SMSTKEEILKPEVVDVIRRYAAAESVNVSF 162 (178)
Q Consensus 99 ~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~---~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~ 162 (178)
++ +|.+.++...++++|-.++.-.|.-.+ ..+.+.+ .|..++..+....+.|.|+
T Consensus 596 ~L-----lp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~----~v~pll~~L~~d~~~dvr~ 653 (759)
T KOG0211|consen 596 DL-----LPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE----EVLPLLETLSSDQELDVRY 653 (759)
T ss_pred HH-----hHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH----HHHHHHHHhccCcccchhH
Confidence 66 789999999999999999988877554 2222333 3344444444444555554
No 193
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=24.47 E-value=3e+02 Score=21.71 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=50.7
Q ss_pred hccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccc-
Q 030369 61 QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEE- 139 (178)
Q Consensus 61 qL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~- 139 (178)
.-.+-+.|+++|+.+++.++..|.-||..--. | .|..+ =+.+-+++... +....++++..--.++.-.+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~-~----~l~pY--~d~L~~Lldd~---~frdeL~~f~~~~~~~~I~~e 84 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD-P----YLTPY--KDNLENLLDDK---TFRDELTTFNLSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H----HHHhH--HHHHHHHcCcc---hHHHHHHhhcccCCcCCCCHH
Confidence 34667889999999999999999999987522 2 33222 24556666543 77777777653222222111
Q ss_pred ---ccchHHHHHHHHh
Q 030369 140 ---ILKPEVVDVIRRY 152 (178)
Q Consensus 140 ---I~~p~ll~ll~~~ 152 (178)
...|-|+.+|-..
T Consensus 85 hR~~l~pvvlRILygk 100 (141)
T PF07539_consen 85 HRPELMPVVLRILYGK 100 (141)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 2246666666533
No 194
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.47 E-value=2.6e+02 Score=27.13 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=73.4
Q ss_pred HHHhhhccChHHHHhhhc---CC---cHHHHHHHHHHHHhh-cCCchhhHHhhhcCChhHHHH-hh-cCCchhHHHHHHH
Q 030369 56 YTFLRQLNVLELFLDCIT---EP---NEKLVEFGVGGICNA-SVDPANAAIITKSGGIPLIIE-CL-SSPVRNTVNHALG 126 (178)
Q Consensus 56 ~~~LrqL~vidlfld~L~---~~---n~~l~EfAiggLcNL-~~D~~nk~~I~~~gGi~~li~-lL-sS~~~evv~~Alt 126 (178)
...|+.=+|+++++.++. ++ +..=|++..+-+-|+ .++|..-.++.++|-+.|+.. |- ..+-.--+.+|.+
T Consensus 169 idaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 169 IDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 457888899999998876 22 345578888888998 599999999999988888766 44 4455667799999
Q ss_pred HHHHhcCCc--cccccc----chHHHHHHHHhhhhc
Q 030369 127 ALYYLCSMS--TKEEIL----KPEVVDVIRRYAAAE 156 (178)
Q Consensus 127 tL~~L~~~~--sr~~I~----~p~ll~ll~~~~~~~ 156 (178)
.|.-+.+.+ ++.-.. ...+++.+--|+.+.
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 999888774 444443 255555555565543
No 195
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.44 E-value=1.3e+02 Score=21.56 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh-c-cChHHHHhhhcCCcHHHHHHHHHH
Q 030369 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ-L-NVLELFLDCITEPNEKLVEFGVGG 86 (178)
Q Consensus 20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq-L-~vidlfld~L~~~n~~l~EfAigg 86 (178)
.++|+=++.=|+.+++.|.||.|+.-+.++--. +...||- + -++..+-..-.++++.++..|--+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~--~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQS--RGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH--hHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 367888888889999999999999998877621 2233433 1 233333334444567777666543
No 196
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.34 E-value=1.1e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=29.6
Q ss_pred CChhHHHHhhcCCchhHHHHHHHHHHHhcC---CcccccccchHHH
Q 030369 104 GGIPLIIECLSSPVRNTVNHALGALYYLCS---MSTKEEILKPEVV 146 (178)
Q Consensus 104 gGi~~li~lLsS~~~evv~~AlttL~~L~~---~~sr~~I~~p~ll 146 (178)
.++..|.+-|.++++.+++.|++.|=-|+. +.-..+|-+-.++
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 356778888899999999999987766663 2234555543333
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=24.11 E-value=4.4e+02 Score=23.21 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=52.8
Q ss_pred hHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCC--hhHHHHhhcCCch-hHHH--HHHHHHHHhcCC-cccc
Q 030369 65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGG--IPLIIECLSSPVR-NTVN--HALGALYYLCSM-STKE 138 (178)
Q Consensus 65 idlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gG--i~~li~lLsS~~~-evv~--~AlttL~~L~~~-~sr~ 138 (178)
+.-+||.|.+-+..-.|-|..+|+++..-.--.++|.+.-. ++.+.+++..+.. |..+ .+++.+.--+.+ ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 55678888888899999999999999755444555543211 4667777865543 3332 223333211122 2334
Q ss_pred ccc---chHHHHHHHHhhh
Q 030369 139 EIL---KPEVVDVIRRYAA 154 (178)
Q Consensus 139 ~I~---~p~ll~ll~~~~~ 154 (178)
+|. .|+|...+...+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~ 143 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSA 143 (309)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 444 4777776665533
No 198
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=2.4e+02 Score=31.12 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhh
Q 030369 77 EKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAA 155 (178)
Q Consensus 77 ~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~ 155 (178)
..++|-+..=|.|.= ..|-+-.=+.-+|+++.-++||.+.| .-.++.|-.+-.- .++.+|..|. ..++..|+..
T Consensus 4 ~~ller~~lRL~~ad---d~Klet~~~~~L~~vi~~l~s~~~~v-r~V~e~Lth~~krv~s~~~v~lPv-~al~~~~a~~ 78 (1702)
T KOG0915|consen 4 KELLERVLLRLANAD---DSKLETLVSNFLPPVILKLSSPHPVV-RQVLEILTHVNKRVKSQHEVQLPV-LALLKLYAAQ 78 (1702)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHhhccHHHHHhcCCchHH-HHHHHHHHHHHHHhccCcccCCcH-HHHHHHhcCc
Confidence 357788888787763 34444444567999999999996544 4444555444433 5688888764 7777788876
Q ss_pred cccchhHHHhHHHHHHh
Q 030369 156 ESVNVSFSNLAKAFLDK 172 (178)
Q Consensus 156 ~~~~~~~~nla~~fL~~ 172 (178)
+ +-++|-|-+|++.
T Consensus 79 s---t~~rnfaii~~~m 92 (1702)
T KOG0915|consen 79 S---TMVRNFAIIYVEM 92 (1702)
T ss_pred c---hhhhhhHHHHHhh
Confidence 4 6789999999874
No 199
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.07 E-value=5.1e+02 Score=23.72 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhc-cChHHHHhhhcCCcHHHHHHHH-------------
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQL-NVLELFLDCITEPNEKLVEFGV------------- 84 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL-~vidlfld~L~~~n~~l~EfAi------------- 84 (178)
=+|.+...+.-|..--.+|.+.-..--|.-..--|.-..|-.+| .++..|++ .|+.+.+.-+
T Consensus 195 lLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~----kdp~l~~~~i~~llk~WP~t~s~ 270 (409)
T PF01603_consen 195 LLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE----KDPSLAEPVIKGLLKHWPKTNSQ 270 (409)
T ss_dssp HHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH----H-GGGHHHHHHHHHHHS-SS-HH
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHhCCCCCch
Confidence 34555556655554556666666666666666666666666664 55565654 1223333333
Q ss_pred ---------HHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHH-----HHhcCCcccccccchHHHHHHH
Q 030369 85 ---------GGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGAL-----YYLCSMSTKEEILKPEVVDVIR 150 (178)
Q Consensus 85 ---------ggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL-----~~L~~~~sr~~I~~p~ll~ll~ 150 (178)
..|+-.+.+...+..... =...|.+|++|++-.|...|+..+ ..++.. ......|-+..-|.
T Consensus 271 Kev~FL~el~~il~~~~~~~f~~i~~~--lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 271 KEVLFLNELEEILEVLPPEEFQKIMVP--LFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHH--HHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--THHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--ChHHHHHHHHHHHH
Confidence 333333332222222211 135668889999888877776332 233311 22333466666665
Q ss_pred HhhhhcccchhHHHhHHHHHH
Q 030369 151 RYAAAESVNVSFSNLAKAFLD 171 (178)
Q Consensus 151 ~~~~~~~~~~~~~nla~~fL~ 171 (178)
+-+..+= |+.++++|..-|.
T Consensus 347 ~~~~~HW-n~~Vr~~a~~vl~ 366 (409)
T PF01603_consen 347 RNSKNHW-NQTVRNLAQNVLK 366 (409)
T ss_dssp STTSS-S-STTHHHHHHHHHH
T ss_pred HHHHHHh-hHHHHHHHHHHHH
Confidence 5444222 4567777765443
No 200
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=24.04 E-value=2.8e+02 Score=21.94 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCc
Q 030369 39 KEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPV 117 (178)
Q Consensus 39 keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~ 117 (178)
+..|.-.+.|+..++.+-..+...-++=..+-.+.++ ...+++-..-|++ -.++.--.+..|+--|.+.|++|
T Consensus 53 ~~~i~~~~~~~l~~e~~~~ll~~~~~~~~~l~~~~~e~~~~~~~~~~~a~~-----~~~~~~~~~~vgl~~Llk~LkDP- 126 (148)
T COG2427 53 KADIAKKLKDELAKELIENLLNNMLIMLGLLSLIDSERLSKLVENLIKAIE-----AVKAEKNAEPVGLLGLLKALKDP- 126 (148)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-----HHHhcccCCCccHHHHHHHcCCH-
Confidence 4567777777777777777666644443333333333 3344455555554 22222233445788888888886
Q ss_pred hhHHHHHHHHHHHhc
Q 030369 118 RNTVNHALGALYYLC 132 (178)
Q Consensus 118 ~evv~~AlttL~~L~ 132 (178)
| |..+++.+....
T Consensus 127 -d-vq~~Lg~lls~l 139 (148)
T COG2427 127 -D-VQRGLGFLLSIL 139 (148)
T ss_pred -H-HHHHHHHHHHHH
Confidence 3 356677666543
No 201
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=23.88 E-value=2e+02 Score=20.10 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369 116 PVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174 (178)
Q Consensus 116 ~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~ 174 (178)
++.+.++.++..|-.+- -+...+..-.+-..+..+..|+ |+.|+.+|+..++++.
T Consensus 16 ~~~~~~l~~L~~L~~~~--~t~~~L~~T~iG~~v~~Lrkh~--~~~I~~~A~~Li~~WK 70 (75)
T smart00509 16 KEVSRCLDILKKLKKLP--ITVDLLEETRIGKKVNGLRKHK--NEEIRKLAKKLIKSWK 70 (75)
T ss_pred CCHHHHHHHHHHHhcCC--CCHHHHHHCcHHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence 34566666666666422 2344444455666667777765 6899999999988764
No 202
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=23.57 E-value=1.3e+02 Score=24.61 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=43.3
Q ss_pred cChHHHHhhhcCC--------cHHHHHHHHHHHHhhcCCchhhHHhhh--cCC--hhHHHHhhcCCchhHHHHHHHHHHH
Q 030369 63 NVLELFLDCITEP--------NEKLVEFGVGGICNASVDPANAAIITK--SGG--IPLIIECLSSPVRNTVNHALGALYY 130 (178)
Q Consensus 63 ~vidlfld~L~~~--------n~~l~EfAiggLcNL~~D~~nk~~I~~--~gG--i~~li~lLsS~~~evv~~AlttL~~ 130 (178)
-.+|+|.+...+. -..|-.-+-|-+..=..+|.-+.+++. .|| |+++|.+|.|.++++...|...|-+
T Consensus 41 ~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 41 FLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3466777777665 235555555655555677888888865 566 5899999998899999999988864
No 203
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.35 E-value=2.4e+02 Score=26.42 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHhhhcCCh-hHHHHhhcCC--chhHHHHHHHHHHHhcCC-ccccccc-----chHHHH
Q 030369 77 EKLVEFGVGGICNASVDPANAAIITKSGGI-PLIIECLSSP--VRNTVNHALGALYYLCSM-STKEEIL-----KPEVVD 147 (178)
Q Consensus 77 ~~l~EfAiggLcNL~~D~~nk~~I~~~gGi-~~li~lLsS~--~~evv~~AlttL~~L~~~-~sr~~I~-----~p~ll~ 147 (178)
+--.-||+-|+.|+..||+-+..+-..+.+ ..++..++.. +-+.+-|++-+++.|.=. ....+|- +-.+++
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 334579999999999999999999776555 4678888554 356778888888887643 3334444 244455
Q ss_pred HHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369 148 VIRRYAAAESVNVSFSNLAKAFLDKHVT 175 (178)
Q Consensus 148 ll~~~~~~~~~~~~~~nla~~fL~~~~~ 175 (178)
+++.-.. .++..+|.+.+-..|+
T Consensus 243 iVk~~~k-----eKV~Rlc~~Iv~n~~d 265 (432)
T COG5231 243 IVKERAK-----EKVLRLCCGIVANVLD 265 (432)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 5543333 4788888887766665
No 204
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=23.29 E-value=1.4e+02 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh---ccChHHHHhhhc
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ---LNVLELFLDCIT 73 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq---L~vidlfld~L~ 73 (178)
-|+.|+.-.+.. +...|.=|+..+=|+++|-..+..|-. .++++-+|--|.
T Consensus 104 ~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 104 PLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 467777655544 999999999999999999999988877 455555555554
No 205
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=5.5e+02 Score=25.67 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHH----HHHHHHHH
Q 030369 11 RTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK----LVEFGVGG 86 (178)
Q Consensus 11 rt~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~----l~EfAigg 86 (178)
|+.+.++++-+-+--||+.-|.+ .++-|+.++-=+--|-+=|.+--.+--.+|+...+-|+++.++. +-.---+-
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred hcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Q ss_pred HHhhcCCchhhHHhhhcCCh-hHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHHhhhhcccchhHH
Q 030369 87 ICNASVDPANAAIITKSGGI-PLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRRYAAAESVNVSFS 163 (178)
Q Consensus 87 LcNL~~D~~nk~~I~~~gGi-~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~~~~~~~~~~~~~ 163 (178)
+.-++..+.-++. ++.|.| +-+.+.|++..+++..-++.-+.-|.+..--.-+. .+-...+|...+..++ -+.
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vv 394 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVV 394 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHH
Q ss_pred HhHHHHHHhhccCC
Q 030369 164 NLAKAFLDKHVTEN 177 (178)
Q Consensus 164 nla~~fL~~~~~~~ 177 (178)
-++--.|..-|+..
T Consensus 395 l~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 395 LLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHhcCc
No 206
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.92 E-value=1.6e+02 Score=24.23 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=10.2
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+--|-++
T Consensus 73 aslLK~flReLPeP 86 (202)
T cd04394 73 AGLLKQFFRELPEP 86 (202)
T ss_pred HHHHHHHHhcCCCc
Confidence 56777788888765
No 207
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.89 E-value=1.6e+02 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=9.5
Q ss_pred ccChHHHHhhhcCC
Q 030369 62 LNVLELFLDCITEP 75 (178)
Q Consensus 62 L~vidlfld~L~~~ 75 (178)
.+++-.|+.-|.++
T Consensus 82 a~lLK~flreLP~P 95 (190)
T cd04400 82 AGLLKLYLRELPTL 95 (190)
T ss_pred HHHHHHHHHhCCcc
Confidence 46666777777765
No 208
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.72 E-value=1.6e+02 Score=22.40 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhc-cCcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC
Q 030369 36 EERKEKIVANLANFA-YDPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNASVD 93 (178)
Q Consensus 36 ~e~keqvlanLaNfA-yDP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~~D 93 (178)
.......+.-+-.|+ +||..-..+++ | +. ...+.+|-+..|.|+|++
T Consensus 31 s~~~~ktl~y~~kFsk~~~e~a~elve~L---------~~--~~~l~e~~a~~I~nL~P~ 79 (112)
T PRK14981 31 SYELRRTLDYLNRFSKLDPEDAEELVEEL---------LE--LEKMKEKTAVKIADILPE 79 (112)
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHH---------HH--ccCCCHHHHHHHHhcCCC
Confidence 345666788888898 88864444433 3 22 224689999999999966
No 209
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=22.42 E-value=3.1e+02 Score=24.58 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHhhhcc----ChHHHHhhhcCC-cHHHHHHHHHHHHhhc--CCchhhHH--hhhcCChhHHHHh
Q 030369 57 TFLRQLN----VLELFLDCITEP-NEKLVEFGVGGICNAS--VDPANAAI--ITKSGGIPLIIEC 112 (178)
Q Consensus 57 ~~LrqL~----vidlfld~L~~~-n~~l~EfAiggLcNL~--~D~~nk~~--I~~~gGi~~li~l 112 (178)
+.+++++ +++.+.+++... .+....+++++.+... .||...+. +.+..||+..++-
T Consensus 295 d~~~Kl~~~~R~~~~~~~~~~~g~~~~~l~~~~A~~~~~~~~~D~~~~~l~~~~~~~~~~~~~~~ 359 (381)
T PRK02318 295 QPLRKLGANDRLIKPLLGLKEYGLPHSNLLKGIAAALHFDDENDPQAVELQALIAEKGLEAALAE 359 (381)
T ss_pred ChhhcCCCCceeHHHHHHHHHcCCChHHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCHHHHHHH
Confidence 3467774 799999999875 5777888888877665 56655432 4555678766544
No 210
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.13 E-value=1.2e+02 Score=26.32 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.0
Q ss_pred HHHhh-cCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369 86 GICNA-SVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134 (178)
Q Consensus 86 gLcNL-~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~ 134 (178)
+|.++ +.-|..+.+. +|.+++-|+|+.+++++.++.+|..++..
T Consensus 194 ~L~~cl~s~~~fa~~~-----~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 194 ALRNCLSSTPLFAPFA-----FPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHhcCcHhhHHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444 3446666655 89999999999999999999999998743
No 211
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.97 E-value=63 Score=33.94 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=63.0
Q ss_pred HHhhhccChHHHHhhhcCC--------cHHHHHHHHHHHHhhcCCchhhHHhhh--------cCChhHHHHhh----cCC
Q 030369 57 TFLRQLNVLELFLDCITEP--------NEKLVEFGVGGICNASVDPANAAIITK--------SGGIPLIIECL----SSP 116 (178)
Q Consensus 57 ~~LrqL~vidlfld~L~~~--------n~~l~EfAiggLcNL~~D~~nk~~I~~--------~gGi~~li~lL----sS~ 116 (178)
+-+++|+.+-.||+..+-+ -..++.||.+-||=+-.=|.-+.++.. ..||..|.+-- +-.
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 3467888889999887744 246789999999988766777777653 34887775553 455
Q ss_pred chhHHHHHHHHHHHhcCC--ccccccc
Q 030369 117 VRNTVNHALGALYYLCSM--STKEEIL 141 (178)
Q Consensus 117 ~~evv~~AlttL~~L~~~--~sr~~I~ 141 (178)
||++...|+.++.+++-+ ..|+.+.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i 701 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTI 701 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhh
Confidence 899999999999999854 4555443
No 212
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=21.55 E-value=70 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred CCchhhHHhhhcCChhHHHHhhcCCc
Q 030369 92 VDPANAAIITKSGGIPLIIECLSSPV 117 (178)
Q Consensus 92 ~D~~nk~~I~~~gGi~~li~lLsS~~ 117 (178)
.+...+.+ ++.|||+.|.++++.|.
T Consensus 350 N~~~C~~F-Ve~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 350 NSDHCREF-VEKGGIELLLDLLTLPS 374 (379)
T ss_pred CHHHHHHH-HHcCCHHHHHHHHcCCC
Confidence 34444444 58999999999998874
No 213
>PF04924 Pox_A6: Poxvirus A6 protein ; InterPro: IPR007008 This is a family of poxvirus A6 proteins have no known function.
Probab=21.33 E-value=3.9e+02 Score=24.83 Aligned_cols=106 Identities=24% Similarity=0.338 Sum_probs=73.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh---ccChHHHHhhhcCCcHHH-------------HHHHHHH
Q 030369 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ---LNVLELFLDCITEPNEKL-------------VEFGVGG 86 (178)
Q Consensus 23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq---L~vidlfld~L~~~n~~l-------------~EfAigg 86 (178)
+=++|...+.++.+.+-=++|.+=.+|---.+|+..=-+ |++|.+|=.-|-.+.++| +.||+.|
T Consensus 139 I~eIv~~ik~a~~e~~aykiLq~n~sFivktiNKvlSDeNYllKiIAvFds~LvtDK~KL~EYreiftiS~es~i~GIrC 218 (371)
T PF04924_consen 139 IMEIVSQIKNANCENQAYKILQNNYSFIVKTINKVLSDENYLLKIIAVFDSDLVTDKEKLEEYREIFTISTESIIHGIRC 218 (371)
T ss_pred HHHHHHHHHcccCchHHHHHHHhcchhHHHHHHHHhcchhhHHHHHHHHhhhhhhchhhHHHHHHHHhhhHHHHHHHhhh
Confidence 346889999999999999999998888877777654333 678999998888775444 4689999
Q ss_pred HHhhc---CCchhhHHhhhcCChhHHHHhhcC------C--chhHHHHHHHHHHHhcCC
Q 030369 87 ICNAS---VDPANAAIITKSGGIPLIIECLSS------P--VRNTVNHALGALYYLCSM 134 (178)
Q Consensus 87 LcNL~---~D~~nk~~I~~~gGi~~li~lLsS------~--~~evv~~AlttL~~L~~~ 134 (178)
+|.+- +|-.|-.+| .-+.+.|++ + ++.--.+.+.-||-++..
T Consensus 219 isdlei~si~~~nnKYv------~FfKKiL~~vilFQn~dln~~~F~~ivsKLy~liy~ 271 (371)
T PF04924_consen 219 ISDLEIPSIDIDNNKYV------SFFKKILSNVILFQNNDLNSQKFANIVSKLYVLIYN 271 (371)
T ss_pred hhcccccceecccchHH------HHHHHHhCceEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 99994 445555554 223333322 2 345556777777777743
No 214
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.26 E-value=5.7e+02 Score=22.49 Aligned_cols=135 Identities=12% Similarity=0.169 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHh-hc----
Q 030369 17 TPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICN-AS---- 91 (178)
Q Consensus 17 ~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcN-L~---- 91 (178)
.-|..|++=+..=. ...+.+.|.+++.+ + +.+..++--|..|.+.++..-+-.|+. ..
T Consensus 129 siR~~fI~F~Lsfl-~~~~~~~~~~lL~~--------------~--~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~ 191 (330)
T PF11707_consen 129 SIRTNFIRFWLSFL-SSGDPELKRDLLSQ--------------K--KLMSALFKGLRKDPPETVILILETLKDKVLKDSS 191 (330)
T ss_pred CHHHHHHHHHHHHH-ccCCHHHHHHHHHc--------------C--chHHHHHhcccCCCHHHHHHHHHHHHHHhccCCC
Confidence 44767776555544 44477777777654 2 337788888888888888888888885 33
Q ss_pred CCchhhHHhhhcCChhHHHHhhcCCch----hHHHHHHHHHHHhcCC-c---cccc----------------------cc
Q 030369 92 VDPANAAIITKSGGIPLIIECLSSPVR----NTVNHALGALYYLCSM-S---TKEE----------------------IL 141 (178)
Q Consensus 92 ~D~~nk~~I~~~gGi~~li~lLsS~~~----evv~~AlttL~~L~~~-~---sr~~----------------------I~ 141 (178)
+.++.|..|+...-+..|.++-+..++ .+..-+-..|+.+|++ . ..++ +.
T Consensus 192 v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (330)
T PF11707_consen 192 VSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKIN 271 (330)
T ss_pred CChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcc
Confidence 336788889988888999998777767 6777777778887754 1 1221 11
Q ss_pred chHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369 142 KPEVVDVIRRYAAAESVNVSFSNLAKAFL 170 (178)
Q Consensus 142 ~p~ll~ll~~~~~~~~~~~~~~nla~~fL 170 (178)
-..+..+|+.++..+ ..+-+++.-..|
T Consensus 272 Nk~L~~ll~~lkp~e--~~~q~~Lvl~Il 298 (330)
T PF11707_consen 272 NKLLLNLLKKLKPWE--DDRQQELVLKIL 298 (330)
T ss_pred cHHHHHHHHHCCCCc--cHHHHHHHHHHH
Confidence 367888888887755 355555554443
No 215
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=21.10 E-value=3.1e+02 Score=19.39 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhc
Q 030369 22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQL 62 (178)
Q Consensus 22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL 62 (178)
.++.+.+.+...+...+.+-...=..+.--| .+||..+--+
T Consensus 15 ~f~~~~~~l~~~~~~~~~~~f~~v~~~lf~d~~inWGRIval 56 (101)
T PF00452_consen 15 FFENMLNQLNINTPDNAYETFNEVAEELFEDGGINWGRIVAL 56 (101)
T ss_dssp HHHHHHHHHCSSSTTTHHHHHHHHHHHHTTTSSTCHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 3566666666533322333333333333455 7888877654
No 216
>PF15606 Toxin_55: Putative toxin 55
Probab=21.04 E-value=1.1e+02 Score=22.38 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHhhCCCCCChHHHHHHHHHHhhcCChH
Q 030369 9 EERTGRSGTPRLQYLQELVSQFQNSTDE 36 (178)
Q Consensus 9 ~~rt~~~g~~R~~ylq~LV~efq~t~~~ 36 (178)
..++|....+|-+.||+|++.++-+...
T Consensus 31 ~~~~~GK~~drCd~Lqelid~g~~~~k~ 58 (77)
T PF15606_consen 31 AFQSGGKAPDRCDVLQELIDCGDISAKQ 58 (77)
T ss_pred HHhhcCCCCcHHHHHHHHHHccCcCHHH
Confidence 3567888899999999999988776443
No 217
>PF11642 Blo-t-5: Mite allergen Blo t 5; InterPro: IPR020306 This entry contains mite allergens Der p 5 [] and Blo t 5 [], belonging to the mite group 5 allergen family, as well Blo t 21 [] belonging to group 21. Mite allergens causes an allergic reaction in humans []. Common symptoms of mite allergy are bronchial asthma, allergic rhinitis and conjunctivitis. Der p 5 binds to IgE.; PDB: 3MQ1_E 2JMH_A 2JRK_A.
Probab=20.45 E-value=62 Score=25.43 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHH
Q 030369 19 RLQYLQELVSQFQNSTDEERKEKIVA 44 (178)
Q Consensus 19 R~~ylq~LV~efq~t~~~e~keqvla 44 (178)
.+=+|++=|+|+-.|++.+.|+||+.
T Consensus 33 ~Ll~Ls~Qi~~LEktksK~~k~~Ilr 58 (118)
T PF11642_consen 33 FLLHLSHQIAELEKTKSKEEKEQILR 58 (118)
T ss_dssp HHHHHHHHHHHHHCCS-CCHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35689999999999999999999864
No 218
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.39 E-value=3e+02 Score=20.53 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHHHhhcCCchhhHHhhhcCChhHHHHhh---cCCchhHHHHHHHHHHHhcCCc---cccccc-chHHHHHHHHhhhhc
Q 030369 84 VGGICNASVDPANAAIITKSGGIPLIIECL---SSPVRNTVNHALGALYYLCSMS---TKEEIL-KPEVVDVIRRYAAAE 156 (178)
Q Consensus 84 iggLcNL~~D~~nk~~I~~~gGi~~li~lL---sS~~~evv~~AlttL~~L~~~~---sr~~I~-~p~ll~ll~~~~~~~ 156 (178)
..-|+.++-++..-..| ...|.+.| +.++.-++.-|++.|-||+.-. -..++. .-..++-+..|+-..
T Consensus 24 l~eIa~~t~~~~~~~~I-----~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d 98 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEI-----MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVD 98 (125)
T ss_dssp HHHHHHHTTSCHHHHHH-----HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BB
T ss_pred HHHHHHHHhccccHHHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccC
Confidence 35688888888666667 45677777 5556788999999999999553 233333 345677777776511
Q ss_pred ----ccchhHHHhHHHHHH
Q 030369 157 ----SVNVSFSNLAKAFLD 171 (178)
Q Consensus 157 ----~~~~~~~nla~~fL~ 171 (178)
+....|+..|+-.++
T Consensus 99 ~~g~d~~~~VR~~A~~i~~ 117 (125)
T PF01417_consen 99 PKGKDQGQNVREKAKEILE 117 (125)
T ss_dssp TTSTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 122358888876654
No 219
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=94 Score=31.65 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=35.7
Q ss_pred chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc
Q 030369 94 PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL 141 (178)
Q Consensus 94 ~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~ 141 (178)
+++-..+.++ -++|++||+..|+.+-+.|+..+|-.++..+-.+|.
T Consensus 328 ktHp~~Vqa~--kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIV 373 (877)
T KOG1059|consen 328 KTHPKAVQAH--KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIV 373 (877)
T ss_pred hhCHHHHHHh--HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444433 678899999999999999999999999876666664
Done!