Query 030370
Match_columns 178
No_of_seqs 116 out of 767
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 5.5E-54 1.9E-58 334.5 12.4 120 59-178 1-122 (122)
2 1whi_A Ribosomal protein L14; 100.0 6.7E-54 2.3E-58 333.9 11.8 120 59-178 1-122 (122)
3 3r8s_K 50S ribosomal protein L 100.0 2.2E-53 7.4E-58 331.1 10.9 119 59-177 1-122 (122)
4 3bbo_M Ribosomal protein L14; 100.0 3.1E-53 1.1E-57 329.8 11.0 119 59-178 1-121 (121)
5 1vq8_K 50S ribosomal protein L 100.0 7.7E-50 2.6E-54 314.7 11.1 117 58-178 10-132 (132)
6 3j21_J 50S ribosomal protein L 100.0 3.3E-49 1.1E-53 313.9 9.7 118 57-178 18-141 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 1.1E-48 3.9E-53 309.6 11.0 117 58-178 15-137 (137)
8 2qqr_A JMJC domain-containing 46.9 42 0.0014 25.4 5.7 42 87-141 4-45 (118)
9 1xe1_A Hypothetical protein PF 39.4 71 0.0024 24.0 5.9 51 61-116 61-113 (116)
10 3h9w_A Diguanylate cyclase wit 32.4 66 0.0023 20.5 4.3 28 124-151 71-98 (115)
11 2ftc_K 39S ribosomal protein L 31.5 62 0.0021 23.7 4.3 31 90-123 5-35 (98)
12 3r87_A Putative uncharacterize 28.4 1.5E+02 0.005 20.4 6.1 64 86-165 67-131 (135)
13 4b19_A PEPA1; toxin, toxin apo 27.1 9.2 0.00032 22.8 -0.7 10 2-11 15-24 (30)
14 2xdp_A Lysine-specific demethy 24.8 36 0.0012 25.9 2.0 41 88-141 6-46 (123)
15 3v2d_T 50S ribosomal protein L 22.7 1.2E+02 0.0042 23.8 4.8 34 88-123 21-54 (146)
16 3r8s_P 50S ribosomal protein L 22.6 1E+02 0.0036 23.1 4.2 34 88-123 18-51 (114)
17 1v74_A Colicin D; colicin D - 22.4 91 0.0031 23.4 3.8 29 124-152 58-88 (107)
18 3icy_A Sensor protein; sensory 22.0 1.4E+02 0.0048 18.3 4.4 29 123-151 81-109 (118)
19 1t9i_A DNA endonuclease I-CREI 21.7 19 0.00065 27.6 -0.0 11 7-17 9-19 (163)
20 3f1p_A Endothelial PAS domain- 21.3 73 0.0025 20.3 2.8 29 123-151 74-103 (117)
21 3f1p_B ARYL hydrocarbon recept 20.9 1.2E+02 0.0041 19.4 3.9 28 123-150 78-106 (121)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=5.5e-54 Score=334.46 Aligned_cols=120 Identities=57% Similarity=0.858 Sum_probs=117.6
Q ss_pred eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370 59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 136 (178)
Q Consensus 59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 136 (178)
|||.+|+|+|+||||||.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence 999999999999999999999999987 679999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 999999999999999999999999999999999999999875
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=6.7e-54 Score=333.93 Aligned_cols=120 Identities=52% Similarity=0.793 Sum_probs=117.8
Q ss_pred eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370 59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 136 (178)
Q Consensus 59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 136 (178)
|||.+|+|+|+||||||+++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 999999999999999999999999999999999999999875
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=2.2e-53 Score=331.08 Aligned_cols=119 Identities=54% Similarity=0.844 Sum_probs=116.5
Q ss_pred eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370 59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 136 (178)
Q Consensus 59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 136 (178)
|||.+|+|+|+|||||++++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCC-CCceeeEEecchhHhhhcCCcchhhhccccc
Q 030370 137 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL 177 (178)
Q Consensus 137 dNavVLln~k-~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i 177 (178)
|||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus 81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 9999999999 9999999999999999999999999999975
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.1e-53 Score=329.79 Aligned_cols=119 Identities=45% Similarity=0.776 Sum_probs=116.7
Q ss_pred eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370 59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 136 (178)
Q Consensus 59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 136 (178)
|||.+|+|+|+||||||.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
|||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence 9999999999999999999999999999 8999999999875
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=7.7e-50 Score=314.66 Aligned_cols=117 Identities=33% Similarity=0.549 Sum_probs=112.2
Q ss_pred heeeccceEEEeeCcCcceEEEEEeeC--C--ccc--cccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCc
Q 030370 58 TFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 131 (178)
Q Consensus 58 ~mIq~~T~L~VaDNSGAK~v~cI~vl~--~--~k~--a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~ 131 (178)
.|||.+|+|+|+||||||.++||++++ + +++ |++||+|++|||+++|++ |||+++|||||||++++|+||+
T Consensus 10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~ 86 (132)
T 1vq8_K 10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT 86 (132)
T ss_dssp CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence 599999999999999999999999998 4 456 999999999999999997 6999999999999999999999
Q ss_pred eEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 132 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 132 ~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
+++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 87 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 87 RVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV 132 (132)
T ss_dssp EEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred EEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence 999999999999999999999999999999999 7999999999875
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-49 Score=313.95 Aligned_cols=118 Identities=39% Similarity=0.610 Sum_probs=111.9
Q ss_pred hheeeccceEEEeeCcCcceEEEEEeeC--C--cc--ccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCC
Q 030370 57 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 130 (178)
Q Consensus 57 ~~mIq~~T~L~VaDNSGAK~v~cI~vl~--~--~k--~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG 130 (178)
-.|||.+|+|+|+|||||++++||++++ + ++ +|++||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG 94 (141)
T 3j21_J 18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG 94 (141)
T ss_dssp CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence 4699999999999999999999999998 3 33 5999999999999999998 599999999999999999999
Q ss_pred ceEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 131 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 131 ~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||+.++
T Consensus 95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~-~~~KI~SlA~~iv 141 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAE-RWVRIGSIASIIV 141 (141)
T ss_dssp CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHH-HCHHHHHHCSEEC
T ss_pred cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHh-hchHHhhcccccC
Confidence 9999999999999999999999999999999999 5999999999875
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=1.1e-48 Score=309.62 Aligned_cols=117 Identities=32% Similarity=0.439 Sum_probs=111.6
Q ss_pred heeeccceEEEeeCcCcceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCc
Q 030370 58 TFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 131 (178)
Q Consensus 58 ~mIq~~T~L~VaDNSGAK~v~cI~vl~~--~----k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~ 131 (178)
.+||++|+|+|+||||||.++||+++++ + ++|++||+|++|||++.|+. |||+++|||||||++++|+||+
T Consensus 15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~ 91 (137)
T 3u5e_V 15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV 91 (137)
T ss_dssp CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence 4799999999999999999999999985 2 48999999999999999998 5899999999999999999999
Q ss_pred eEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370 132 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178 (178)
Q Consensus 132 ~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 178 (178)
+++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 92 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv 137 (137)
T 3u5e_V 92 FLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV 137 (137)
T ss_dssp EEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred EEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence 9999999999999999999999999999999996 999999999985
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=46.90 E-value=42 Score=25.38 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=29.5
Q ss_pred cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEecCceEE
Q 030370 87 KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 141 (178)
Q Consensus 87 k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFddNavV 141 (178)
+..++||.|.+.- + -|.-++|.|++.+.+. ...+.|+||+.-
T Consensus 4 ~~v~vGq~V~akh-----~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVISKH-----K----NGRFYQCEVVRLTTET----FYEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEEEC-----T----TSSEEEEEEEEEEEEE----EEEEEETTSCEE
T ss_pred ceeccCCEEEEEC-----C----CCCEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 3457999888421 1 3677889999987754 357899998864
No 9
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=39.44 E-value=71 Score=24.04 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=33.2
Q ss_pred eccceEEEeeCc-CcceEEEEEeeCC-ccccccCcEEEEEEeeecCCCcccccceEEE
Q 030370 61 QMRTVLKVVDNS-GAKTVMCIQPLKG-RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116 (178)
Q Consensus 61 q~~T~L~VaDNS-GAK~v~cI~vl~~-~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kA 116 (178)
..++.| |+- -.-.++-|+.=.. -..|..||-|-++++.... .++.|++.+.
T Consensus 61 K~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~--~I~~GdVLyv 113 (116)
T 1xe1_A 61 GVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG--KVKKGDVLEI 113 (116)
T ss_dssp ETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC--CCCTTCEEEE
T ss_pred cCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc--ccCCCcEEEE
Confidence 346666 433 2344555654221 3579999999999997554 6888988764
No 10
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=32.44 E-value=66 Score=20.52 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=22.8
Q ss_pred eecCCCCceEEecCceEEEEcCCCCcee
Q 030370 124 QHGRFDGSEVRFDDNAVVLVNKAGEPTG 151 (178)
Q Consensus 124 ~~~R~dG~~ikFddNavVLln~k~~PlG 151 (178)
...++||...-+...+.++.|++|+|.+
T Consensus 71 r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 71 RALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 3567899988888899888998898753
No 11
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=31.50 E-value=62 Score=23.70 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=23.4
Q ss_pred ccCcEEEEEEeeecCCCcccccceEEEEEEEEee
Q 030370 90 RLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 123 (178)
Q Consensus 90 ~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk 123 (178)
.+||+|.|.++-. ..+ ++=|.+.|+++..+.
T Consensus 5 ~~GDtv~V~~~i~--g~k-~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 5 YVGSILRVTTADP--YAS-GKISQFLGICIQRSG 35 (98)
T ss_pred CCCCEEEEEEEEC--CCc-eEeeeEEEEEEEEEC
Confidence 5899999999765 222 346899999998664
No 12
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=28.38 E-value=1.5e+02 Score=20.45 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=35.9
Q ss_pred ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCC-CCceEEecCceEEEEcCCCCceeeEEecchhHhhhc
Q 030370 86 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF-DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRR 164 (178)
Q Consensus 86 ~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~-dG~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~ 164 (178)
++.+..||.|.+...-..-.. .... ......+. ||..+---+-..|.+|.++.|. |+|.|+++
T Consensus 67 ~~p~~~gd~v~v~t~v~~~~~----~s~~------~~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~ 130 (135)
T 3r87_A 67 QDGVEFAEICDIRTSFTLDGK----YKTL------WRQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILA 130 (135)
T ss_dssp CSCCCTTCEEEEEEEEEEETT----TEEE------EEEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCC----EEEE------EEEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 467889999988875332221 1211 12223333 5544433344556777665554 88999887
Q ss_pred C
Q 030370 165 K 165 (178)
Q Consensus 165 k 165 (178)
.
T Consensus 131 ~ 131 (135)
T 3r87_A 131 S 131 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=27.14 E-value=9.2 Score=22.78 Aligned_cols=10 Identities=60% Similarity=1.717 Sum_probs=8.7
Q ss_pred ceeechhhhh
Q 030370 2 CTISIFPYWL 11 (178)
Q Consensus 2 ~~~~~~~~~~ 11 (178)
|.++.|-|||
T Consensus 15 civalF~hWL 24 (30)
T 4b19_A 15 CAIAFFSYWL 24 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788999998
No 14
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=24.81 E-value=36 Score=25.92 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=27.2
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEecCceEE
Q 030370 88 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 141 (178)
Q Consensus 88 ~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFddNavV 141 (178)
..++||.|.+- .+ -|.-++|-|++.+.+.- ..+.|+||+.-
T Consensus 6 ~v~vGq~V~ak-----~~----ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITK-----HR----NTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCC-----CC----CCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred ccccCCEEEEE-----CC----CCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 45688877621 11 26677777788776443 57889998876
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=22.65 E-value=1.2e+02 Score=23.75 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=24.2
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEEee
Q 030370 88 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 123 (178)
Q Consensus 88 ~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk 123 (178)
.-.+||+|.|.++-...+. .+=|.+.|+|+..+.
T Consensus 21 ~F~~GDtV~V~~~i~EG~k--eRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGNR--TRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCTTCEEEEEEEEECSSC--EEEEEEEEEEEEEEC
T ss_pred CcCCCCEEEEEEEEccCCc--eeeeeEEEEEEEEEC
Confidence 4579999999998543221 234789999998764
No 16
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=22.55 E-value=1e+02 Score=23.10 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=23.8
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEEee
Q 030370 88 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 123 (178)
Q Consensus 88 ~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk 123 (178)
.-.+||+|.|.++-...+. .+=|.+.++++..+.
T Consensus 18 ~f~~GDtv~V~~~i~EG~k--eRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSK--KRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCTTCEEEEEEEEEETTE--EEEEEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEecCCc--eeeeeEEEEEEEEEC
Confidence 4579999999987433211 234789999998764
No 17
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=22.43 E-value=91 Score=23.37 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=23.1
Q ss_pred eecCCCCceEEe--cCceEEEEcCCCCceee
Q 030370 124 QHGRFDGSEVRF--DDNAVVLVNKAGEPTGT 152 (178)
Q Consensus 124 ~~~R~dG~~ikF--ddNavVLln~k~~PlGT 152 (178)
.+|+..++.+.| ..|-+|+++.+|+-++=
T Consensus 58 TYR~~~dskVy~N~~T~~~Viid~~g~FvsG 88 (107)
T 1v74_A 58 TYRREKGSKVYFNPNTMNVVIIKSNGEFLSG 88 (107)
T ss_dssp BCTTSTTCEEEECTTTCEEEEECTTSCEEEE
T ss_pred eeecCCCcEEEEeCCCCeEEEEcCCCCEEEE
Confidence 356666899999 78999999999987543
No 18
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=22.04 E-value=1.4e+02 Score=18.34 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=22.6
Q ss_pred eeecCCCCceEEecCceEEEEcCCCCcee
Q 030370 123 MQHGRFDGSEVRFDDNAVVLVNKAGEPTG 151 (178)
Q Consensus 123 k~~~R~dG~~ikFddNavVLln~k~~PlG 151 (178)
....++||...-+...+..+.+++|.+.|
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34567899888888888888888888764
No 19
>1t9i_A DNA endonuclease I-CREI; protein, hydrolase/DNA complex; HET: DNA; 1.60A {Chlamydomonas reinhardtii} SCOP: d.95.2.1 PDB: 1n3f_A* 1n3e_A* 1t9j_A* 1u0d_A* 1u0c_A* 2o7m_A* 2i3p_A* 4aae_A* 1g9z_A* 1bp7_A* 1g9y_A* 3mxb_B* 2i3q_A* 4aab_A* 4aad_A* 4aaf_A* 4aag_A* 3mxb_A* 2vbo_A* 2vbn_A* ...
Probab=21.74 E-value=19 Score=27.62 Aligned_cols=11 Identities=36% Similarity=0.636 Sum_probs=9.0
Q ss_pred hhhhhheeeee
Q 030370 7 FPYWLIGFYLA 17 (178)
Q Consensus 7 ~~~~~~~~~~~ 17 (178)
|++||.||.=+
T Consensus 9 F~~WLaGFiDg 19 (163)
T 1t9i_A 9 FLLYLAGFVDG 19 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhheEEEEec
Confidence 89999999643
No 20
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=21.30 E-value=73 Score=20.32 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred eeecCCCCceEEecCceEEEEcC-CCCcee
Q 030370 123 MQHGRFDGSEVRFDDNAVVLVNK-AGEPTG 151 (178)
Q Consensus 123 k~~~R~dG~~ikFddNavVLln~-k~~PlG 151 (178)
...+++||..+-++.++..+.|+ +++|.+
T Consensus 74 ~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 74 YRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 34567899999999999888887 666643
No 21
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=20.92 E-value=1.2e+02 Score=19.43 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=22.0
Q ss_pred eeecCCCCceEEecCceEEEEcC-CCCce
Q 030370 123 MQHGRFDGSEVRFDDNAVVLVNK-AGEPT 150 (178)
Q Consensus 123 k~~~R~dG~~ikFddNavVLln~-k~~Pl 150 (178)
...+++||.++-++.++..+.|+ +++|.
T Consensus 78 ~r~~~~dG~~~w~~~~~~~~~~~~~g~~~ 106 (121)
T 3f1p_B 78 FRFRSKNQEWLWMRTSSFTFQNPYSDEIE 106 (121)
T ss_dssp EEEECTTSCEEEEEEEEEEECCTTCCCCC
T ss_pred EEEEecCCCEEEEEEEEEEEECCCCCcee
Confidence 34567899999999999988887 56664
Done!